AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84602

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84602.t1 MTR_7g066400 83.521 443 37 3 1 436 1 414 0.0 735
MS.gene84602.t1 MTR_7g066400 27.632 228 132 7 3 228 235 431 1.89e-13 72.4
MS.gene84602.t1 MTR_7g066350 63.387 437 143 6 5 436 2 426 0.0 533
MS.gene84602.t1 MTR_1g041315 61.276 439 148 5 12 436 14 444 0.0 528
MS.gene84602.t1 MTR_1g041315 26.047 215 122 6 5 217 271 450 6.48e-11 64.7
MS.gene84602.t1 MTR_7g066340 61.937 444 155 5 1 440 1 434 0.0 525
MS.gene84602.t1 MTR_7g066260 58.371 442 172 5 2 436 3 439 9.75e-175 498
MS.gene84602.t1 MTR_7g066260 28.111 217 123 9 21 236 278 462 9.92e-13 70.1
MS.gene84602.t1 MTR_7g066570 55.088 452 166 8 13 436 15 457 2.77e-154 449
MS.gene84602.t1 MTR_7g066570 28.947 228 141 7 12 228 257 474 1.20e-15 79.3
MS.gene84602.t1 MTR_7g012680 54.483 435 162 9 12 436 14 422 3.82e-145 422
MS.gene84602.t1 MTR_7g066310 53.521 426 125 7 12 436 7 360 6.33e-139 404
MS.gene84602.t1 MTR_7g066360 52.489 442 184 9 2 436 4 426 8.92e-135 396
MS.gene84602.t1 MTR_7g066290 51.481 439 174 6 3 436 6 410 1.68e-133 391
MS.gene84602.t1 MTR_7g058710 47.021 470 199 7 1 436 1 454 2.73e-132 390
MS.gene84602.t1 MTR_7g058710 26.050 238 154 8 3 228 244 471 1.67e-12 69.7
MS.gene84602.t1 MTR_7g066580 46.593 455 174 10 18 436 1 422 1.65e-125 371
MS.gene84602.t1 MTR_7g066580 28.632 234 145 8 12 230 215 441 6.42e-14 73.9
MS.gene84602.t1 MTR_7g066430 41.542 467 229 7 9 436 1 462 6.80e-115 346
MS.gene84602.t1 MTR_7g066430 28.390 236 147 7 7 228 252 479 4.20e-18 87.0
MS.gene84602.t1 MTR_7g066410 40.619 485 223 8 12 436 10 489 2.50e-111 337
MS.gene84602.t1 MTR_7g066410 29.437 231 141 6 12 228 284 506 2.61e-18 87.4
MS.gene84602.t1 MTR_2g029400 42.325 456 163 8 12 440 14 396 8.25e-111 332
MS.gene84602.t1 MTR_7g066280 47.619 399 124 6 91 436 1 367 3.50e-108 326
MS.gene84602.t1 MTR_7g066280 28.270 237 130 7 21 228 159 384 3.60e-15 77.4
MS.gene84602.t1 MTR_7g058700 44.444 432 153 9 26 436 533 898 2.99e-105 333
MS.gene84602.t1 MTR_7g063900 38.983 472 239 11 1 436 1 459 1.19e-94 294
MS.gene84602.t1 MTR_7g063900 25.000 236 141 8 2 215 242 463 7.36e-14 73.9
MS.gene84602.t1 MTR_7g063660 38.293 457 233 13 12 436 9 448 3.49e-94 292
MS.gene84602.t1 MTR_7g062300 39.309 463 241 13 1 436 1 450 2.70e-93 290
MS.gene84602.t1 MTR_7g062280 38.544 467 231 14 12 436 10 462 8.31e-93 289
MS.gene84602.t1 MTR_7g062280 28.959 221 148 4 11 228 265 479 2.29e-18 87.8
MS.gene84602.t1 MTR_7g066480 41.667 432 204 7 12 440 16 402 1.10e-92 286
MS.gene84602.t1 MTR_7g063890 39.355 465 226 13 12 436 27 475 4.00e-88 277
MS.gene84602.t1 MTR_7g063880 38.758 467 227 14 1 436 1 439 2.71e-84 266
MS.gene84602.t1 MTR_7g066490 40.603 431 198 11 11 440 15 388 5.70e-83 261
MS.gene84602.t1 MTR_7g063830 37.269 432 244 10 13 440 11 419 8.34e-83 261
MS.gene84602.t1 MTR_7g063920 36.425 442 219 6 12 436 11 407 7.61e-81 256
MS.gene84602.t1 MTR_7g063920 27.753 227 137 8 11 228 216 424 4.97e-15 77.0
MS.gene84602.t1 MTR_4g019310 34.156 486 252 14 1 437 1 467 4.60e-79 254
MS.gene84602.t1 MTR_7g063820 36.538 468 252 11 1 436 1 455 7.33e-78 250
MS.gene84602.t1 MTR_7g063820 28.512 242 145 7 2 228 244 472 9.76e-14 73.2
MS.gene84602.t1 MTR_1g014060 59.906 212 82 3 21 230 9 219 9.13e-78 247
MS.gene84602.t1 MTR_1g014060 48.077 156 66 3 292 436 210 361 7.11e-35 134
MS.gene84602.t1 MTR_3g007740 36.748 449 222 12 12 436 9 419 6.26e-76 244
MS.gene84602.t1 MTR_3g007740 27.273 220 132 7 11 228 243 436 8.32e-12 67.4
MS.gene84602.t1 MTR_7g063840 36.285 463 249 13 1 436 1 444 2.11e-75 243
MS.gene84602.t1 MTR_7g063840 25.101 247 140 7 2 228 240 461 2.64e-14 75.1
MS.gene84602.t1 MTR_3g065200 34.590 451 214 8 12 436 3 398 2.13e-75 243
MS.gene84602.t1 MTR_4g017830 34.286 490 258 14 1 437 1 479 6.71e-73 238
MS.gene84602.t1 MTR_4g019340 34.335 466 252 11 13 437 39 491 2.57e-70 231
MS.gene84602.t1 MTR_4g019340 28.251 223 128 7 11 223 302 502 1.32e-14 76.3
MS.gene84602.t1 MTR_4g017610 32.618 466 253 12 14 439 15 459 1.41e-68 226
MS.gene84602.t1 MTR_4g017410 35.331 484 245 19 5 440 2 465 2.69e-68 226
MS.gene84602.t1 MTR_4g017440 34.167 480 247 16 13 437 15 480 2.12e-65 218
MS.gene84602.t1 MTR_7g063670 34.157 445 248 12 13 440 16 432 2.20e-65 217
MS.gene84602.t1 MTR_7g063670 28.000 225 133 9 6 228 248 445 1.56e-14 75.9
MS.gene84602.t1 MTR_7g066680 44.622 251 113 3 211 437 37 285 2.26e-61 203
MS.gene84602.t1 MTR_7g066680 27.189 217 131 8 10 213 84 286 5.45e-14 73.2
MS.gene84602.t1 MTR_4g017470 31.185 481 230 12 13 437 13 448 2.11e-57 197
MS.gene84602.t1 MTR_4g017470 24.454 229 143 5 21 227 243 463 7.35e-14 73.9
MS.gene84602.t1 MTR_4g017550 31.057 454 238 16 39 437 18 451 1.28e-48 173
MS.gene84602.t1 MTR_4g017550 28.270 237 114 8 21 227 256 466 9.35e-12 67.0
MS.gene84602.t1 MTR_7g062270 46.746 169 88 2 13 180 11 178 1.22e-40 149
MS.gene84602.t1 MTR_2g067310 47.093 172 52 4 23 194 58 190 8.47e-35 130
MS.gene84602.t1 MTR_8g023240 29.268 328 204 10 1 323 29 333 2.35e-32 129
MS.gene84602.t1 MTR_7g063720 35.870 184 106 3 262 436 23 203 7.60e-32 122
MS.gene84602.t1 MTR_7g063720 25.974 231 128 6 10 228 21 220 1.84e-18 84.7
MS.gene84602.t1 MTR_7g066390 46.269 134 37 2 303 436 1 99 2.10e-26 104
MS.gene84602.t1 MTR_8g445860 29.614 233 147 4 12 234 13 238 9.81e-25 102
MS.gene84602.t1 MTR_1g115440 31.120 241 136 7 12 234 11 239 6.69e-24 100
MS.gene84602.t1 MTR_0150s0010 29.487 234 149 3 12 234 10 238 6.46e-22 94.7
MS.gene84602.t1 MTR_7g063690 27.857 280 129 9 13 289 13 222 3.75e-20 89.7
MS.gene84602.t1 MTR_7g100420 30.315 254 136 6 211 436 134 374 1.64e-19 90.5
MS.gene84602.t1 MTR_7g100420 59.322 59 20 1 13 67 40 98 1.78e-12 68.9
MS.gene84602.t1 MTR_7g100420 26.840 231 155 5 4 228 169 391 2.07e-11 65.9
MS.gene84602.t1 MTR_7g063850 26.855 283 150 10 184 436 4 259 2.07e-19 88.6
MS.gene84602.t1 MTR_7g063850 26.222 225 146 7 11 228 65 276 9.20e-12 65.9
MS.gene84602.t1 MTR_4g019240 46.154 104 44 4 13 108 14 113 2.35e-19 85.9
MS.gene84602.t1 MTR_1g115455 29.344 259 127 9 5 234 2 233 9.04e-17 79.7
MS.gene84602.t1 MTR_1g115450 33.898 118 62 2 12 129 7 108 7.27e-15 72.0
MS.gene84602.t1 MTR_1g115470 38.614 101 51 2 1 101 1 90 1.26e-12 69.7
MS.gene84602.t1 MTR_0150s0030 37.363 91 51 2 6 95 2 87 6.83e-12 65.1
MS.gene84602.t1 MTR_7g063870 62.500 48 18 0 13 60 32 79 8.70e-12 65.5
MS.gene84602.t1 MTR_8g445910 38.947 95 49 4 12 102 8 97 6.99e-11 63.2
MS.gene84602.t1 MTR_8g445920 39.241 79 43 1 12 90 10 83 7.92e-11 59.3
MS.gene84602.t1 MTR_8g044890 39.241 79 43 1 12 90 10 83 7.92e-11 59.3
MS.gene84602.t1 MTR_8g044880 38.824 85 46 2 12 95 8 87 8.15e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84602.t1 AT5G01120 29.724 471 272 10 13 437 10 467 2.31e-56 194
MS.gene84602.t1 AT5G43240 29.512 471 277 12 13 437 10 471 3.31e-52 183
MS.gene84602.t1 AT5G43240 29.512 471 277 12 13 437 10 471 3.31e-52 183
MS.gene84602.t1 AT5G43240 29.512 471 277 12 13 437 10 471 3.31e-52 183
MS.gene84602.t1 AT3G09110 32.803 314 207 2 15 327 12 322 5.36e-50 173
MS.gene84602.t1 AT5G01150 30.519 462 266 12 15 437 12 457 6.61e-50 177
MS.gene84602.t1 AT3G09140 29.060 468 277 10 12 433 9 467 1.04e-48 174
MS.gene84602.t1 AT3G09140 25.652 230 140 9 10 227 276 486 8.12e-11 64.3
MS.gene84602.t1 AT5G01130 29.195 435 284 9 12 440 9 425 4.37e-48 171
MS.gene84602.t1 AT3G09120 32.698 315 195 4 12 316 6 313 8.32e-48 166
MS.gene84602.t1 AT5G01140 28.090 445 263 8 15 433 12 425 1.84e-44 161
MS.gene84602.t1 AT5G01140 28.509 228 126 7 13 227 241 444 5.07e-15 77.4
MS.gene84602.t1 AT3G09140 27.218 496 278 11 12 433 9 495 4.52e-43 159
MS.gene84602.t1 AT3G09140 25.652 230 140 9 10 227 304 514 9.87e-11 64.3
MS.gene84602.t1 AT5G37320 28.322 459 286 14 11 437 10 457 5.17e-41 152
MS.gene84602.t1 AT5G43240 25.902 305 190 7 164 437 28 327 1.84e-17 84.0

Find 81 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAATCGTTTGGAATTT+TGG 0.040096 7.3:+39161170 MS.gene84602:CDS
CTCTTTCTTCTACATCATTA+AGG 0.157802 7.3:-39161708 None:intergenic
GATCCCAAATCCCCTATTTC+TGG 0.202846 7.3:+39161580 MS.gene84602:CDS
GATAATTGCACAAGAGAAAA+TGG 0.203532 7.3:+39160734 MS.gene84602:CDS
CTGAGAAATCCTCCAGAAAT+AGG 0.208530 7.3:-39161592 None:intergenic
CTTTGTCCACCATAAATGTT+AGG 0.244452 7.3:-39160406 None:intergenic
TCCTCCAGAAATAGGGGATT+TGG 0.248070 7.3:-39161584 None:intergenic
TAAGCTTCCATAGAGTTTCT+AGG 0.257151 7.3:-39160647 None:intergenic
AGTCCAATGTCATCAATTTC+TGG 0.262917 7.3:+39161655 MS.gene84602:CDS
CAAAATTCCAAACGATTTCT+TGG 0.266858 7.3:-39161169 None:intergenic
AAACTTGTTCCAAGATGATT+AGG 0.308810 7.3:-39160899 None:intergenic
ATTGAGTAGCATTTCTTTGC+AGG 0.317151 7.3:-39160624 None:intergenic
TCTCACCAATCGGTAATATC+TGG 0.340346 7.3:-39161498 None:intergenic
CGTATCTAAAGAGTCAAATA+TGG 0.342580 7.3:+39160523 MS.gene84602:CDS
TGAGTCCTGACAGGTGTTTA+AGG 0.352622 7.3:+39161413 MS.gene84602:CDS
TGAGAAATCCTCCAGAAATA+GGG 0.353661 7.3:-39161591 None:intergenic
TTTAGACCCAAGAAATCGTT+TGG 0.354287 7.3:+39161162 MS.gene84602:CDS
GGTACTATGCAAGTACATTC+AGG 0.364581 7.3:+39160756 MS.gene84602:CDS
ACTCAATCCTAGAAACTCTA+TGG 0.368526 7.3:+39160640 MS.gene84602:CDS
TCTTTCTTCTACATCATTAA+GGG 0.383547 7.3:-39161707 None:intergenic
CCTCCAGAAATAGGGGATTT+GGG 0.383622 7.3:-39161583 None:intergenic
TTTGTCAGTCCTAATCATCT+TGG 0.384248 7.3:+39160890 MS.gene84602:CDS
AAAATTCCAAACGATTTCTT+GGG 0.400983 7.3:-39161168 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.3:+39160920 MS.gene84602:CDS
GAAGAAAGAGTCATCAGAAT+TGG 0.409170 7.3:+39161721 MS.gene84602:CDS
CAGAGGGCCAACGTCGTTCA+TGG 0.410417 7.3:+39161612 MS.gene84602:CDS
GTCAGACTTTATCTTTGAAA+AGG 0.412577 7.3:+39161123 MS.gene84602:CDS
AAGATTGTCAGAAATTATAA+AGG 0.433322 7.3:-39160867 None:intergenic
AATATGGAAGCCGTGAGGTT+TGG 0.437074 7.3:+39160539 MS.gene84602:CDS
ATCTTGATGAGAAGTATCTA+TGG 0.452896 7.3:+39160594 MS.gene84602:CDS
TTTGTCCACCATAAATGTTA+GGG 0.465766 7.3:-39160405 None:intergenic
CGAAAATCCACTACAAAGAA+TGG 0.468030 7.3:+39160824 MS.gene84602:CDS
TCATCCTCACAGAGAAAGAA+AGG 0.495444 7.3:-39160713 None:intergenic
AATTGGCGTGAAGGAGGTAA+AGG 0.496520 7.3:+39161738 MS.gene84602:CDS
AACAAAGCCATTCTTTGTAG+TGG 0.497094 7.3:-39160831 None:intergenic
TGCGTATTTAGAAAGAATGA+AGG 0.499246 7.3:+39161681 MS.gene84602:CDS
CGTTAACATCAGCAAGAAAG+AGG 0.509174 7.3:+39160976 MS.gene84602:CDS
CATTTATGGTGGACAAAGAA+AGG 0.510553 7.3:+39160411 MS.gene84602:CDS
ATAATTGCACAAGAGAAAAT+GGG 0.513938 7.3:+39160735 MS.gene84602:CDS
CTTTCTTCTACATCATTAAG+GGG 0.514709 7.3:-39161706 None:intergenic
ATTGGTGAGACAAACTCATC+TGG 0.517085 7.3:+39161511 MS.gene84602:CDS
GCCAATGCGTCAGATAATCT+AGG 0.519694 7.3:+39160371 MS.gene84602:CDS
GATGAGTTTGTCTCACCAAT+CGG 0.519751 7.3:-39161508 None:intergenic
ACCTAGATTATCTGACGCAT+TGG 0.523086 7.3:-39160372 None:intergenic
GCTTCTTGACATTACCTCTA+GGG 0.524982 7.3:+39160486 MS.gene84602:CDS
ATTGGCGTGAAGGAGGTAAA+GGG 0.533357 7.3:+39161739 MS.gene84602:CDS
TTGGCATGCATCTTGAACTC+AGG 0.536811 7.3:+39161473 MS.gene84602:CDS
AGCTTCTTGACATTACCTCT+AGG 0.539034 7.3:+39160485 MS.gene84602:CDS
TACCATTCCGCTGGGTGGAG+TGG 0.541850 7.3:+39161324 MS.gene84602:CDS
CTTGCCTTTCTTTCTCTGTG+AGG 0.544107 7.3:+39160709 MS.gene84602:CDS
CAAAGGAGACTTTGAGAGCA+AGG 0.550620 7.3:-39161101 None:intergenic
AAAGTTCTATATGCTGAGGC+AGG 0.554367 7.3:+39160437 MS.gene84602:CDS
TTTCTGGAGGATTTCTCAGA+GGG 0.555601 7.3:+39161596 MS.gene84602:CDS
TGGCTATTTCATGCCCTGCA+AGG 0.559659 7.3:+39161531 MS.gene84602:CDS
TGTGACCTTAAACACCTGTC+AGG 0.562502 7.3:-39161418 None:intergenic
GTACTATGCAAGTACATTCA+GGG 0.562553 7.3:+39160757 MS.gene84602:CDS
AGACCAGAAATTGATGACAT+TGG 0.564415 7.3:-39161658 None:intergenic
GAGAAATCCTCCAGAAATAG+GGG 0.567664 7.3:-39161590 None:intergenic
GGAGTGGTAATCATGTTTGA+AGG 0.570563 7.3:+39161340 MS.gene84602:CDS
TATTGACTCCAAGCTTCTGA+AGG 0.571942 7.3:-39160928 None:intergenic
ATCTCATCAGATTCATCGCA+CGG 0.582254 7.3:-39161211 None:intergenic
CCCAAATCCCCTATTTCTGG+AGG 0.587988 7.3:+39161583 MS.gene84602:CDS
TACCACTCCACCCAGCGGAA+TGG 0.593322 7.3:-39161326 None:intergenic
AGTCATCAGAATTGGCGTGA+AGG 0.596722 7.3:+39161729 MS.gene84602:CDS
TTTCTTACCATTCCGCTGGG+TGG 0.597880 7.3:+39161319 MS.gene84602:CDS
CATCAGAATTGGCGTGAAGG+AGG 0.599170 7.3:+39161732 MS.gene84602:CDS
AGACTAAGTGAGCCACAAGT+TGG 0.600780 7.3:+39161454 MS.gene84602:CDS
TCAAAGATAAAGTCTGACAA+AGG 0.601732 7.3:-39161118 None:intergenic
TCAAGATGCATGCCAACTTG+TGG 0.608242 7.3:-39161466 None:intergenic
ATTTCTGGAGGATTTCTCAG+AGG 0.613319 7.3:+39161595 MS.gene84602:CDS
GTGCGATGAATCTGATGAGA+TGG 0.616494 7.3:+39161213 MS.gene84602:CDS
GAAGAAAGTTCTATATGCTG+AGG 0.619886 7.3:+39160433 MS.gene84602:CDS
TGACTGAGTTGAGTCCTGAC+AGG 0.635922 7.3:+39161404 MS.gene84602:CDS
TTGTCCACCATAAATGTTAG+GGG 0.641440 7.3:-39160404 None:intergenic
GCTGATGCTGCCAAACCTCA+CGG 0.652909 7.3:-39160549 None:intergenic
AGGAACCAGATATTACCGAT+TGG 0.659517 7.3:+39161493 MS.gene84602:CDS
TGTCCACCATAAATGTTAGG+GGG 0.661663 7.3:-39160403 None:intergenic
TCAGTCACCATGAACGACGT+TGG 0.688460 7.3:-39161619 None:intergenic
AGTCTAGCAATAGTCCCTAG+AGG 0.713115 7.3:-39160500 None:intergenic
ATGATTACCACTCCACCCAG+CGG 0.746322 7.3:-39161331 None:intergenic
AGTCAAATATGGAAGCCGTG+AGG 0.747088 7.3:+39160534 MS.gene84602:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTGTCAGAAATTATAA+AGG - chr7.3:39160870-39160889 None:intergenic 20.0%
!!! TTTGAAAAGGAATATTTTGT+TGG + chr7.3:39161136-39161155 MS.gene84602:CDS 20.0%
! AAAATTCCAAACGATTTCTT+GGG - chr7.3:39161171-39161190 None:intergenic 25.0%
! ATAATTGCACAAGAGAAAAT+GGG + chr7.3:39160735-39160754 MS.gene84602:CDS 25.0%
! TCTTTCTTCTACATCATTAA+GGG - chr7.3:39161710-39161729 None:intergenic 25.0%
CAAAATTCCAAACGATTTCT+TGG - chr7.3:39161172-39161191 None:intergenic 30.0%
CGTATCTAAAGAGTCAAATA+TGG + chr7.3:39160523-39160542 MS.gene84602:CDS 30.0%
CTCTTTCTTCTACATCATTA+AGG - chr7.3:39161711-39161730 None:intergenic 30.0%
CTTTCTTCTACATCATTAAG+GGG - chr7.3:39161709-39161728 None:intergenic 30.0%
GATAATTGCACAAGAGAAAA+TGG + chr7.3:39160734-39160753 MS.gene84602:CDS 30.0%
TCAAAGATAAAGTCTGACAA+AGG - chr7.3:39161121-39161140 None:intergenic 30.0%
TGCGTATTTAGAAAGAATGA+AGG + chr7.3:39161681-39161700 MS.gene84602:CDS 30.0%
TTTGTCCACCATAAATGTTA+GGG - chr7.3:39160408-39160427 None:intergenic 30.0%
! AAACTTGTTCCAAGATGATT+AGG - chr7.3:39160902-39160921 None:intergenic 30.0%
! GTCAGACTTTATCTTTGAAA+AGG + chr7.3:39161123-39161142 MS.gene84602:CDS 30.0%
!! AATCGTTTGGAATTTTGGAT+AGG + chr7.3:39161175-39161194 MS.gene84602:CDS 30.0%
!! ATCTTGATGAGAAGTATCTA+TGG + chr7.3:39160594-39160613 MS.gene84602:CDS 30.0%
!! CAAGAAATCGTTTGGAATTT+TGG + chr7.3:39161170-39161189 MS.gene84602:CDS 30.0%
!! GAACAGATTTTGTTTGTTGA+AGG + chr7.3:39161265-39161284 MS.gene84602:CDS 30.0%
!!! TCTCTCTTTTTTATGTTGCA+TGG + chr7.3:39161363-39161382 MS.gene84602:CDS 30.0%
!!! TCTTTTTTATGATCCTTGCA+GGG - chr7.3:39161547-39161566 None:intergenic 30.0%
!!! TTCTTTTTTATGATCCTTGC+AGG - chr7.3:39161548-39161567 None:intergenic 30.0%
AACAAAGCCATTCTTTGTAG+TGG - chr7.3:39160834-39160853 None:intergenic 35.0%
ACTCAATCCTAGAAACTCTA+TGG + chr7.3:39160640-39160659 MS.gene84602:CDS 35.0%
AGGGATCAAAAATGCATTTG+TGG + chr7.3:39160776-39160795 MS.gene84602:CDS 35.0%
AGTCCAATGTCATCAATTTC+TGG + chr7.3:39161655-39161674 MS.gene84602:CDS 35.0%
ATTGAGTAGCATTTCTTTGC+AGG - chr7.3:39160627-39160646 None:intergenic 35.0%
CGAAAATCCACTACAAAGAA+TGG + chr7.3:39160824-39160843 MS.gene84602:CDS 35.0%
CTTTGTCCACCATAAATGTT+AGG - chr7.3:39160409-39160428 None:intergenic 35.0%
GAAGAAAGAGTCATCAGAAT+TGG + chr7.3:39161721-39161740 MS.gene84602:CDS 35.0%
GAAGAAAGTTCTATATGCTG+AGG + chr7.3:39160433-39160452 MS.gene84602:CDS 35.0%
GTACTATGCAAGTACATTCA+GGG + chr7.3:39160757-39160776 MS.gene84602:CDS 35.0%
TAAGCTTCCATAGAGTTTCT+AGG - chr7.3:39160650-39160669 None:intergenic 35.0%
TGAGAAATCCTCCAGAAATA+GGG - chr7.3:39161594-39161613 None:intergenic 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.3:39160920-39160939 MS.gene84602:CDS 35.0%
TTGTCCACCATAAATGTTAG+GGG - chr7.3:39160407-39160426 None:intergenic 35.0%
TTTAGACCCAAGAAATCGTT+TGG + chr7.3:39161162-39161181 MS.gene84602:CDS 35.0%
TTTGTCAGTCCTAATCATCT+TGG + chr7.3:39160890-39160909 MS.gene84602:CDS 35.0%
! AGACCAGAAATTGATGACAT+TGG - chr7.3:39161661-39161680 None:intergenic 35.0%
!! CATTTATGGTGGACAAAGAA+AGG + chr7.3:39160411-39160430 MS.gene84602:CDS 35.0%
!! TTTGGAATTTTGGATAGGAG+AGG + chr7.3:39161180-39161199 MS.gene84602:CDS 35.0%
AAAGTTCTATATGCTGAGGC+AGG + chr7.3:39160437-39160456 MS.gene84602:CDS 40.0%
ACCTAGATTATCTGACGCAT+TGG - chr7.3:39160375-39160394 None:intergenic 40.0%
AGCTTCTTGACATTACCTCT+AGG + chr7.3:39160485-39160504 MS.gene84602:CDS 40.0%
AGGAACCAGATATTACCGAT+TGG + chr7.3:39161493-39161512 MS.gene84602:CDS 40.0%
ATCTCATCAGATTCATCGCA+CGG - chr7.3:39161214-39161233 None:intergenic 40.0%
ATTGGTGAGACAAACTCATC+TGG + chr7.3:39161511-39161530 MS.gene84602:CDS 40.0%
CGTTAACATCAGCAAGAAAG+AGG + chr7.3:39160976-39160995 MS.gene84602:CDS 40.0%
CTGAGAAATCCTCCAGAAAT+AGG - chr7.3:39161595-39161614 None:intergenic 40.0%
GAGAAATCCTCCAGAAATAG+GGG - chr7.3:39161593-39161612 None:intergenic 40.0%
GATGAGTTTGTCTCACCAAT+CGG - chr7.3:39161511-39161530 None:intergenic 40.0%
GCTTCTTGACATTACCTCTA+GGG + chr7.3:39160486-39160505 MS.gene84602:CDS 40.0%
GGAGTGGTAATCATGTTTGA+AGG + chr7.3:39161340-39161359 MS.gene84602:CDS 40.0%
GGTACTATGCAAGTACATTC+AGG + chr7.3:39160756-39160775 MS.gene84602:CDS 40.0%
TCATCCTCACAGAGAAAGAA+AGG - chr7.3:39160716-39160735 None:intergenic 40.0%
TCTCACCAATCGGTAATATC+TGG - chr7.3:39161501-39161520 None:intergenic 40.0%
TGTCCACCATAAATGTTAGG+GGG - chr7.3:39160406-39160425 None:intergenic 40.0%
! AAGTTTTCTTACCATTCCGC+TGG + chr7.3:39161315-39161334 MS.gene84602:CDS 40.0%
! AGTTTTCTTACCATTCCGCT+GGG + chr7.3:39161316-39161335 MS.gene84602:CDS 40.0%
! ATTTCTGGAGGATTTCTCAG+AGG + chr7.3:39161595-39161614 MS.gene84602:CDS 40.0%
! ATTTTGGATAGGAGAGGTAG+AGG + chr7.3:39161186-39161205 MS.gene84602:CDS 40.0%
! TTTCTGGAGGATTTCTCAGA+GGG + chr7.3:39161596-39161615 MS.gene84602:CDS 40.0%
!! TATTGACTCCAAGCTTCTGA+AGG - chr7.3:39160931-39160950 None:intergenic 40.0%
AATATGGAAGCCGTGAGGTT+TGG + chr7.3:39160539-39160558 MS.gene84602:CDS 45.0%
AATTGGCGTGAAGGAGGTAA+AGG + chr7.3:39161738-39161757 MS.gene84602:CDS 45.0%
AGACTAAGTGAGCCACAAGT+TGG + chr7.3:39161454-39161473 MS.gene84602:CDS 45.0%
AGTCAAATATGGAAGCCGTG+AGG + chr7.3:39160534-39160553 MS.gene84602:CDS 45.0%
AGTCATCAGAATTGGCGTGA+AGG + chr7.3:39161729-39161748 MS.gene84602:CDS 45.0%
AGTCCCCCTAACATTTATGG+TGG + chr7.3:39160400-39160419 MS.gene84602:CDS 45.0%
AGTCTAGCAATAGTCCCTAG+AGG - chr7.3:39160503-39160522 None:intergenic 45.0%
ATTGGCGTGAAGGAGGTAAA+GGG + chr7.3:39161739-39161758 MS.gene84602:CDS 45.0%
CCAAGTCCCCCTAACATTTA+TGG + chr7.3:39160397-39160416 MS.gene84602:CDS 45.0%
CCATAAATGTTAGGGGGACT+TGG - chr7.3:39160400-39160419 None:intergenic 45.0%
CCTCCAGAAATAGGGGATTT+GGG - chr7.3:39161586-39161605 None:intergenic 45.0%
CTTGCCTTTCTTTCTCTGTG+AGG + chr7.3:39160709-39160728 MS.gene84602:CDS 45.0%
GATCCCAAATCCCCTATTTC+TGG + chr7.3:39161580-39161599 MS.gene84602:CDS 45.0%
GCCAATGCGTCAGATAATCT+AGG + chr7.3:39160371-39160390 MS.gene84602:CDS 45.0%
GTGCGATGAATCTGATGAGA+TGG + chr7.3:39161213-39161232 MS.gene84602:CDS 45.0%
TCAAGATGCATGCCAACTTG+TGG - chr7.3:39161469-39161488 None:intergenic 45.0%
TCCTCCAGAAATAGGGGATT+TGG - chr7.3:39161587-39161606 None:intergenic 45.0%
TGAGTCCTGACAGGTGTTTA+AGG + chr7.3:39161413-39161432 MS.gene84602:CDS 45.0%
TGTGACCTTAAACACCTGTC+AGG - chr7.3:39161421-39161440 None:intergenic 45.0%
TTGGCATGCATCTTGAACTC+AGG + chr7.3:39161473-39161492 MS.gene84602:CDS 45.0%
! CAAAGGAGACTTTGAGAGCA+AGG - chr7.3:39161104-39161123 None:intergenic 45.0%
ATGATTACCACTCCACCCAG+CGG - chr7.3:39161334-39161353 None:intergenic 50.0%
CATCAGAATTGGCGTGAAGG+AGG + chr7.3:39161732-39161751 MS.gene84602:CDS 50.0%
TCAGTCACCATGAACGACGT+TGG - chr7.3:39161622-39161641 None:intergenic 50.0%
TTTCTTACCATTCCGCTGGG+TGG + chr7.3:39161319-39161338 MS.gene84602:CDS 50.0%
! TGACTGAGTTGAGTCCTGAC+AGG + chr7.3:39161404-39161423 MS.gene84602:CDS 50.0%
! TGGCTATTTCATGCCCTGCA+AGG + chr7.3:39161531-39161550 MS.gene84602:CDS 50.0%
!! CCCAAATCCCCTATTTCTGG+AGG + chr7.3:39161583-39161602 MS.gene84602:CDS 50.0%
GCTGATGCTGCCAAACCTCA+CGG - chr7.3:39160552-39160571 None:intergenic 55.0%
CAGAGGGCCAACGTCGTTCA+TGG + chr7.3:39161612-39161631 MS.gene84602:CDS 60.0%
TACCACTCCACCCAGCGGAA+TGG - chr7.3:39161329-39161348 None:intergenic 60.0%
TACCATTCCGCTGGGTGGAG+TGG + chr7.3:39161324-39161343 MS.gene84602:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 39160365 39161768 39160365 ID=MS.gene84602
chr7.3 mRNA 39160365 39161768 39160365 ID=MS.gene84602.t1;Parent=MS.gene84602
chr7.3 exon 39160365 39160997 39160365 ID=MS.gene84602.t1.exon1;Parent=MS.gene84602.t1
chr7.3 CDS 39160365 39160997 39160365 ID=cds.MS.gene84602.t1;Parent=MS.gene84602.t1
chr7.3 exon 39161079 39161768 39161079 ID=MS.gene84602.t1.exon2;Parent=MS.gene84602.t1
chr7.3 CDS 39161079 39161768 39161079 ID=cds.MS.gene84602.t1;Parent=MS.gene84602.t1
Gene Sequence

>MS.gene84602

ATGGCTGCCAATGCGTCAGATAATCTAGGTGTCCAAGTCCCCCTAACATTTATGGTGGACAAAGAAAGGAAGAAAGTTCTATATGCTGAGGCAGGAAAAGATTTTGTTGATGTTCTTTTCAGCTTCTTGACATTACCTCTAGGGACTATTGCTAGACTCGTATCTAAAGAGTCAAATATGGAAGCCGTGAGGTTTGGCAGCATCAGCTCACTGTATCAAAGTGTGTCTGATCTTGATGAGAAGTATCTATGGTCAAATACCTGCAAAGAAATGCTACTCAATCCTAGAAACTCTATGGAAGCTTATTGTCAAAATATGAAATTGAACATTGACGAAACTGAATGCTTGCCTTTCTTTCTCTGTGAGGATGATAATTGCACAAGAGAAAATGGGTACTATGCAAGTACATTCAGGGATCAAAAATGCATTTGTGGCAAGCTATTGAATATTGTGCGTACACGAAAATCCACTACAAAGAATGGCTTTGTTAATGAAAGTTCTACCTTTATAATTTCTGACAATCTTTTTGTCAGTCCTAATCATCTTGGAACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATAACATCGATGATATTGATAAACAAATCGTTAACATCAGCAAGAAAGAGGTATATTTTCTGAGTTTCTATGTTATCTTTTTCTGTTTATTGTTGTGTCTCTCATTAGTTTCTAATCTCTTGTTTCAACAGATCATTGATCTTCTCAAGTTTTCCTTGCTCTCAAAGTCTCCTTTGTCAGACTTTATCTTTGAAAAGGAATATTTTGTTGGTAATTTAGACCCAAGAAATCGTTTGGAATTTTGGATAGGAGAGGTAGAGGAGCCGTGCGATGAATCTGATGAGATGGTTGTGAAAGTAGTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGGAGATGAAAATTTCACTGACTTTATTTTAAGTTTTCTTACCATTCCGCTGGGTGGAGTGGTAATCATGTTTGAAGGTCTCTCTTTTTTATGTTGCATGGATAATTTATATAACAGTATGACTGAGTTGAGTCCTGACAGGTGTTTAAGGTCACAATATGTTAAAGACAGACTAAGTGAGCCACAAGTTGGCATGCATCTTGAACTCAGGAACCAGATATTACCGATTGGTGAGACAAACTCATCTGGCTATTTCATGCCCTGCAAGGATCATAAAAAAGAAGTGAAATTTGTTGATCCCAAATCCCCTATTTCTGGAGGATTTCTCAGAGGGCCAACGTCGTTCATGGTGACTGACGACTTAGTTGTGAGTCCAATGTCATCAATTTCTGGTCTTGCGTATTTAGAAAGAATGAAGGTTCCCCTTAATGATGTAGAAGAAAGAGTCATCAGAATTGGCGTGAAGGAGGTAAAGGGAGTGTGA
Protein sequence

>MS.gene84602.t1

MAANASDNLGVQVPLTFMVDKERKKVLYAEAGKDFVDVLFSFLTLPLGTIARLVSKESNMEAVRFGSISSLYQSVSDLDEKYLWSNTCKEMLLNPRNSMEAYCQNMKLNIDETECLPFFLCEDDNCTRENGYYASTFRDQKCICGKLLNIVRTRKSTTKNGFVNESSTFIISDNLFVSPNHLGTSLNLLQKLGVNNIDDIDKQIVNISKKEIIDLLKFSLLSKSPLSDFIFEKEYFVGNLDPRNRLEFWIGEVEEPCDESDEMVVKVVRRKSNEQILFVEGDENFTDFILSFLTIPLGGVVIMFEGLSFLCCMDNLYNSMTELSPDRCLRSQYVKDRLSEPQVGMHLELRNQILPIGETNSSGYFMPCKDHKKEVKFVDPKSPISGGFLRGPTSFMVTDDLVVSPMSSISGLAYLERMKVPLNDVEERVIRIGVKEVKGV