AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56192

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56192.t1 MTR_3g007740 90.805 261 20 1 1 257 1 261 2.20e-167 474
MS.gene56192.t1 MTR_3g007740 93.636 110 7 0 247 356 334 443 2.75e-65 213
MS.gene56192.t1 MTR_7g063670 60.915 284 93 4 1 275 4 278 3.74e-105 317
MS.gene56192.t1 MTR_7g063670 58.407 113 38 1 253 356 340 452 7.86e-35 133
MS.gene56192.t1 MTR_7g062280 54.255 282 98 4 5 258 6 284 5.08e-89 276
MS.gene56192.t1 MTR_7g062280 53.211 109 46 2 252 356 379 486 9.61e-26 108
MS.gene56192.t1 MTR_7g062280 28.378 222 133 9 9 212 266 479 1.25e-12 68.9
MS.gene56192.t1 MTR_7g062300 55.882 272 97 6 5 258 8 274 2.27e-87 271
MS.gene56192.t1 MTR_7g062300 54.630 108 44 2 252 354 365 472 1.68e-24 104
MS.gene56192.t1 MTR_7g063840 52.581 310 116 8 1 286 1 303 5.79e-87 270
MS.gene56192.t1 MTR_7g063840 53.571 112 43 3 251 356 360 468 7.13e-22 96.7
MS.gene56192.t1 MTR_7g063830 55.849 265 102 4 5 255 6 269 1.77e-86 268
MS.gene56192.t1 MTR_7g063880 56.296 270 90 3 5 258 7 264 3.62e-86 268
MS.gene56192.t1 MTR_7g063880 53.271 107 45 2 254 356 358 463 7.23e-23 99.8
MS.gene56192.t1 MTR_7g063880 28.125 224 128 7 9 212 246 456 4.62e-14 73.6
MS.gene56192.t1 MTR_7g063660 56.204 274 99 6 7 266 7 273 3.73e-85 266
MS.gene56192.t1 MTR_7g063660 50.000 104 44 2 260 356 370 472 1.08e-19 90.5
MS.gene56192.t1 MTR_7g063900 53.818 275 102 5 2 258 3 270 1.79e-82 259
MS.gene56192.t1 MTR_7g063900 50.413 121 43 5 252 356 364 483 1.19e-15 78.2
MS.gene56192.t1 MTR_7g063820 55.147 272 101 5 5 258 6 274 5.57e-82 258
MS.gene56192.t1 MTR_7g063820 51.786 112 46 2 251 356 370 479 1.02e-21 96.3
MS.gene56192.t1 MTR_7g063890 57.430 249 82 6 1 231 19 261 1.23e-76 244
MS.gene56192.t1 MTR_7g063890 51.456 103 47 2 256 356 398 499 1.08e-12 69.3
MS.gene56192.t1 MTR_7g063690 52.896 259 73 3 1 258 3 213 6.93e-76 234
MS.gene56192.t1 MTR_7g063920 50.951 263 80 3 5 255 7 232 5.30e-73 233
MS.gene56192.t1 MTR_7g063920 60.000 105 38 2 255 356 328 431 4.98e-27 111
MS.gene56192.t1 MTR_7g066480 37.136 412 190 11 9 356 16 422 8.28e-63 206
MS.gene56192.t1 MTR_3g065200 53.846 208 68 6 9 201 3 197 2.11e-56 191
MS.gene56192.t1 MTR_3g065200 45.570 79 35 2 271 342 331 408 2.16e-11 65.1
MS.gene56192.t1 MTR_7g066490 34.940 415 181 11 9 356 16 408 3.19e-55 186
MS.gene56192.t1 MTR_7g066290 35.616 438 182 15 4 355 10 433 9.93e-52 177
MS.gene56192.t1 MTR_1g014060 34.921 378 196 10 22 355 13 384 3.58e-50 172
MS.gene56192.t1 MTR_7g066570 40.909 286 130 9 1 258 1 275 4.49e-50 176
MS.gene56192.t1 MTR_7g066570 56.757 74 31 1 282 355 408 480 3.28e-16 80.1
MS.gene56192.t1 MTR_7g062270 51.075 186 70 6 1 168 1 183 2.56e-49 170
MS.gene56192.t1 MTR_7g066340 44.130 247 110 8 8 232 11 251 1.57e-48 170
MS.gene56192.t1 MTR_7g066340 27.234 235 132 10 8 223 262 476 5.29e-12 67.0
MS.gene56192.t1 MTR_7g066430 42.979 235 110 5 9 222 4 235 5.58e-48 169
MS.gene56192.t1 MTR_7g066430 48.000 75 38 1 281 355 412 485 1.94e-12 68.6
MS.gene56192.t1 MTR_7g066260 45.957 235 101 8 8 221 14 243 3.87e-46 164
MS.gene56192.t1 MTR_7g066260 51.351 74 35 1 282 355 390 462 2.96e-14 73.9
MS.gene56192.t1 MTR_7g012680 42.294 279 103 11 8 258 13 261 5.85e-44 157
MS.gene56192.t1 MTR_7g012680 29.680 219 117 8 7 210 241 437 3.81e-12 67.4
MS.gene56192.t1 MTR_7g012680 44.872 78 42 1 278 355 369 445 9.72e-11 63.2
MS.gene56192.t1 MTR_7g066350 43.421 228 110 5 8 218 8 233 1.44e-43 156
MS.gene56192.t1 MTR_7g066410 36.965 257 126 4 2 222 3 259 1.71e-40 149
MS.gene56192.t1 MTR_7g066410 46.053 76 40 1 281 356 439 513 1.08e-11 66.2
MS.gene56192.t1 MTR_7g058710 39.241 237 103 7 8 220 11 230 3.36e-38 142
MS.gene56192.t1 MTR_2g029400 37.662 231 84 4 2 218 5 189 1.80e-35 134
MS.gene56192.t1 MTR_1g041315 37.344 241 117 6 8 218 13 249 2.54e-35 135
MS.gene56192.t1 MTR_7g058700 40.179 224 101 7 21 218 531 747 3.65e-35 136
MS.gene56192.t1 MTR_4g019310 35.587 281 150 7 7 258 6 284 3.53e-34 132
MS.gene56192.t1 MTR_4g019310 46.667 75 38 2 282 355 417 490 8.97e-11 63.5
MS.gene56192.t1 MTR_7g066580 39.631 217 86 7 15 216 1 187 3.48e-32 125
MS.gene56192.t1 MTR_7g066360 41.102 236 112 7 5 218 7 237 5.95e-32 125
MS.gene56192.t1 MTR_7g066360 52.113 71 33 1 282 352 377 446 1.54e-12 68.9
MS.gene56192.t1 MTR_7g066400 33.099 284 134 8 9 267 12 264 7.42e-31 122
MS.gene56192.t1 MTR_7g066400 54.286 70 31 1 282 351 365 433 2.38e-14 74.3
MS.gene56192.t1 MTR_7g063760 72.059 68 19 0 289 356 1 68 1.55e-29 108
MS.gene56192.t1 MTR_8g023240 33.180 217 140 5 10 224 38 251 1.65e-28 116
MS.gene56192.t1 MTR_4g017410 31.879 298 156 11 1 258 1 291 2.86e-26 109
MS.gene56192.t1 MTR_4g017610 34.615 234 116 8 12 215 16 242 1.73e-24 104
MS.gene56192.t1 MTR_7g066310 44.138 145 59 5 8 134 6 146 3.45e-24 102
MS.gene56192.t1 MTR_7g066310 28.986 207 124 8 8 212 192 377 5.33e-12 67.0
MS.gene56192.t1 MTR_7g066310 47.297 74 38 1 282 355 311 383 6.68e-12 66.6
MS.gene56192.t1 MTR_4g017830 33.447 293 152 13 1 258 1 285 6.02e-24 103
MS.gene56192.t1 MTR_8g445860 32.479 234 126 9 9 218 13 238 7.44e-24 98.6
MS.gene56192.t1 MTR_4g017440 30.662 287 152 8 10 258 15 292 6.61e-22 97.1
MS.gene56192.t1 MTR_4g019340 30.952 294 155 11 6 258 35 321 1.16e-21 96.3
MS.gene56192.t1 MTR_1g115440 29.482 251 112 8 9 217 11 238 7.09e-21 90.5
MS.gene56192.t1 MTR_4g017470 31.687 243 102 8 1 216 1 206 4.23e-20 91.7
MS.gene56192.t1 MTR_7g063720 59.211 76 30 1 281 356 153 227 8.62e-20 87.4
MS.gene56192.t1 MTR_7g063720 29.167 216 123 9 9 212 23 220 1.29e-14 73.2
MS.gene56192.t1 MTR_7g063850 59.494 79 30 2 279 356 206 283 1.79e-19 87.8
MS.gene56192.t1 MTR_7g063870 67.273 55 18 0 5 59 27 81 3.67e-17 80.5
MS.gene56192.t1 MTR_7g063870 38.931 131 70 4 126 246 80 210 1.08e-13 70.5
MS.gene56192.t1 MTR_0150s0010 28.455 246 121 8 9 217 10 237 4.56e-17 80.1
MS.gene56192.t1 MTR_2g067310 33.974 156 64 4 21 169 59 182 6.33e-15 73.9
MS.gene56192.t1 MTR_7g100420 76.087 46 11 0 7 52 37 82 4.46e-14 73.2
MS.gene56192.t1 MTR_7g100420 50.704 71 34 1 281 351 324 393 5.10e-12 67.0
MS.gene56192.t1 MTR_1g115455 29.200 250 128 10 1 218 1 233 5.83e-14 70.9
MS.gene56192.t1 MTR_7g066280 50.000 74 36 1 282 355 318 390 6.02e-13 69.7
MS.gene56192.t1 MTR_7g063750 57.407 54 23 0 279 332 14 67 7.51e-13 67.4
MS.gene56192.t1 MTR_7g066390 50.000 74 36 1 282 355 50 122 7.65e-12 63.2
MS.gene56192.t1 MTR_4g017550 31.633 196 101 8 9 178 247 435 8.17e-12 66.6
MS.gene56192.t1 MTR_1g115450 44.595 74 33 2 9 79 7 75 2.53e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56192.t1 AT3G09110 34.701 268 156 6 9 258 9 275 2.85e-38 140
MS.gene56192.t1 AT5G01120 38.197 233 121 6 10 220 10 241 7.77e-35 134
MS.gene56192.t1 AT5G01150 35.540 287 150 8 1 258 1 281 1.03e-32 127
MS.gene56192.t1 AT3G09120 36.709 237 118 7 8 218 5 235 2.38e-32 123
MS.gene56192.t1 AT3G09140 34.733 262 133 7 1 226 1 260 3.16e-32 126
MS.gene56192.t1 AT5G43240 37.395 238 119 7 10 220 10 244 5.79e-31 123
MS.gene56192.t1 AT5G43240 37.395 238 119 7 10 220 10 244 5.79e-31 123
MS.gene56192.t1 AT5G43240 37.395 238 119 7 10 220 10 244 5.79e-31 123
MS.gene56192.t1 AT5G01130 37.238 239 117 8 1 218 1 227 1.23e-30 121
MS.gene56192.t1 AT3G09140 31.379 290 133 8 1 226 1 288 5.37e-28 114
MS.gene56192.t1 AT5G01140 29.514 288 143 8 1 258 1 258 2.25e-21 95.5
MS.gene56192.t1 AT5G37320 31.356 236 131 8 10 215 10 244 1.46e-20 93.2
MS.gene56192.t1 AT5G37320 28.837 215 129 7 10 212 271 473 5.21e-11 64.3

Find 55 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGATCTGCTCAAGAATT+TGG 0.125882 3.3:-3828125 MS.gene56192:CDS
CAAAAGATCACAAATGTATT+TGG 0.202920 3.3:-3827395 MS.gene56192:CDS
CAAAACTCCTCTTGATGATT+TGG 0.207607 3.3:-3827305 MS.gene56192:CDS
TTAGTACCTATGCTCAAATA+AGG 0.230784 3.3:+3828289 None:intergenic
CTCCATCGATCACACGTTAT+TGG 0.237075 3.3:-3828143 MS.gene56192:CDS
GCAGAGTTACAGCATATTAA+AGG 0.249038 3.3:-3827142 MS.gene56192:intron
TGCAAATATAAAGACGAAAT+TGG 0.271766 3.3:+3827337 None:intergenic
TGTTCAGAAAGATTCAAATA+TGG 0.300824 3.3:-3828482 MS.gene56192:CDS
GCAAGTGTCTTTGAAACTTC+TGG 0.305904 3.3:-3828608 MS.gene56192:CDS
TATCAAAGTGTCGAAAATAT+TGG 0.330799 3.3:-3828427 MS.gene56192:CDS
TTGTGCAATGGATTTGTTAA+AGG 0.337059 3.3:-3828211 MS.gene56192:CDS
ATCATTGATCGCTCAATAGA+TGG 0.342471 3.3:+3827841 None:intergenic
TTCAGCAAATAAAACTTTGT+TGG 0.347611 3.3:+3828573 None:intergenic
TTGGATCTGCTCAAGAATTT+GGG 0.352496 3.3:-3828124 MS.gene56192:CDS
TCTTCGGATGAATTATTAAT+CGG 0.359635 3.3:+3828397 None:intergenic
TTTACAAAAGTGATGAAGAT+TGG 0.383530 3.3:-3827471 MS.gene56192:CDS
GCAATGATGACCATGATCTT+TGG 0.387422 3.3:+3828312 None:intergenic
ATCACAAATGTATTTGGTTA+CGG 0.406003 3.3:-3827389 MS.gene56192:CDS
GAACACATGAAGTAATTTGT+AGG 0.406683 3.3:+3828334 None:intergenic
GTTCAGAAAGATTCAAATAT+GGG 0.407299 3.3:-3828481 MS.gene56192:CDS
TAGTACCTATGCTCAAATAA+GGG 0.412015 3.3:+3828290 None:intergenic
GAGAGTGCTGCAATAATCTT+CGG 0.419427 3.3:+3828381 None:intergenic
AGCTTCTTAACCTTACCATT+AGG 0.423122 3.3:-3828520 MS.gene56192:CDS
AGTCTTGCAATTGTACCTAA+TGG 0.432976 3.3:+3828505 None:intergenic
AACTCCTCTTGATGATTTGG+AGG 0.435595 3.3:-3827302 MS.gene56192:CDS
GTATTTGGTTACGGATGATC+TGG 0.438684 3.3:-3827380 MS.gene56192:CDS
TGCCAATTTCACCAAGGAAA+AGG 0.442205 3.3:-3828068 MS.gene56192:intron
AATATGGGACCGGTTACAAT+TGG 0.451314 3.3:-3828466 MS.gene56192:CDS
CAAATCGGTTAGAGGTGTCT+TGG 0.469566 3.3:+3827879 None:intergenic
ACATGAATAATTCTGTCATC+AGG 0.482964 3.3:+3827499 None:intergenic
TTCATGTGTTCCAAAGATCA+TGG 0.483879 3.3:-3828322 MS.gene56192:CDS
CATTGCCCTTATTTGAGCAT+AGG 0.493198 3.3:-3828295 MS.gene56192:CDS
TCAACATCTGCTCTCACAAA+TGG 0.498033 3.3:-3827108 MS.gene56192:CDS
TGCAATTGTACCTAATGGTA+AGG 0.498079 3.3:+3828510 None:intergenic
GTGATGAAGATTGGAGTGGT+GGG 0.499979 3.3:-3827462 MS.gene56192:CDS
TTGAGACAACCAATTGTAAC+CGG 0.501454 3.3:+3828457 None:intergenic
AACACATGAAGTAATTTGTA+GGG 0.515631 3.3:+3828335 None:intergenic
GATGAAGATTGGAGTGGTGG+GGG 0.518998 3.3:-3827460 MS.gene56192:CDS
ATGGAACTAGTTACAGATGA+AGG 0.524395 3.3:-3827424 MS.gene56192:CDS
GAAAGATTCAAATATGGGAC+CGG 0.531685 3.3:-3828476 MS.gene56192:CDS
AAAATATTTACGGTAGGTGT+GGG 0.542707 3.3:-3828267 MS.gene56192:CDS
AGTGATGAAGATTGGAGTGG+TGG 0.550802 3.3:-3827463 MS.gene56192:CDS
ATCCAATAACGTGTGATCGA+TGG 0.554049 3.3:+3828141 None:intergenic
TCGCTAGCACAGTTGTGCAA+TGG 0.560013 3.3:-3828223 MS.gene56192:CDS
TGATGAAGATTGGAGTGGTG+GGG 0.563527 3.3:-3827461 MS.gene56192:CDS
TCAAATCACCCTGAAGTTGG+TGG 0.578083 3.3:-3827779 MS.gene56192:intron
TAGAGGTGTCTTGGAGAGCA+AGG 0.603942 3.3:+3827888 None:intergenic
TGTTCAAATCACCCTGAAGT+TGG 0.614644 3.3:-3827782 MS.gene56192:CDS
TGTCACTATTGGCGTCGACG+AGG 0.634204 3.3:-3827272 MS.gene56192:intron
AACGTGTGATCGATGGAGTG+AGG 0.652725 3.3:+3828148 None:intergenic
ACTGTGCTAGCGAAACTGAA+CGG 0.674572 3.3:+3828233 None:intergenic
GACGAAATTGGAGACAACCA+TGG 0.679732 3.3:+3827349 None:intergenic
ATGATCTGGTCATAGAACCA+TGG 0.688186 3.3:-3827366 MS.gene56192:CDS
AATGACTGCCAATTTCACCA+AGG 0.712712 3.3:-3828074 MS.gene56192:CDS
AAAAGTGATGAAGATTGGAG+TGG 0.722678 3.3:-3827466 MS.gene56192:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAGTTCAAAAGT+GGG + chr3.3:3827743-3827762 None:intergenic 15.0%
!! ATAGGTACTAAAAATATTTA+CGG - chr3.3:3827440-3827459 MS.gene56192:CDS 15.0%
!!! ACTATATGTATTTTTACTAT+GGG - chr3.3:3828509-3828528 MS.gene56192:CDS 15.0%
!! AATTATCTAGGTAGTATTAA+TGG - chr3.3:3828077-3828096 MS.gene56192:CDS 20.0%
!! AGTAAAAATACATATAGTGT+AGG + chr3.3:3828507-3828526 None:intergenic 20.0%
!! GAAAAATAAAAGTTCAAAAG+TGG + chr3.3:3827744-3827763 None:intergenic 20.0%
!!! CACTATATGTATTTTTACTA+TGG - chr3.3:3828508-3828527 MS.gene56192:CDS 20.0%
! ACAATATATTGTATGCTCTA+GGG - chr3.3:3827976-3827995 MS.gene56192:intron 25.0%
! ATCACAAATGTATTTGGTTA+CGG - chr3.3:3828328-3828347 MS.gene56192:CDS 25.0%
! CAAAAGATCACAAATGTATT+TGG - chr3.3:3828322-3828341 MS.gene56192:CDS 25.0%
! GAAACTAAGAACAATGATTT+AGG + chr3.3:3827702-3827721 None:intergenic 25.0%
! GTACTAAAAATATTTACGGT+AGG - chr3.3:3827444-3827463 MS.gene56192:CDS 25.0%
! GTTCAGAAAGATTCAAATAT+GGG - chr3.3:3827236-3827255 MS.gene56192:intron 25.0%
! TCTTCGGATGAATTATTAAT+CGG + chr3.3:3827323-3827342 None:intergenic 25.0%
! TGCAAATATAAAGACGAAAT+TGG + chr3.3:3828383-3828402 None:intergenic 25.0%
! TGTTCAGAAAGATTCAAATA+TGG - chr3.3:3827235-3827254 MS.gene56192:intron 25.0%
! TTACAAGGGAATAATTATCT+AGG - chr3.3:3828065-3828084 MS.gene56192:intron 25.0%
! TTCAGCAAATAAAACTTTGT+TGG + chr3.3:3827147-3827166 None:intergenic 25.0%
! TTTACAAAAGTGATGAAGAT+TGG - chr3.3:3828246-3828265 MS.gene56192:CDS 25.0%
! TTTCTTTCCCAAAAACAAAT+CGG + chr3.3:3827856-3827875 None:intergenic 25.0%
!! AACACATGAAGTAATTTGTA+GGG + chr3.3:3827385-3827404 None:intergenic 25.0%
!! CAAATATAAAACCTTTTCCT+TGG + chr3.3:3827663-3827682 None:intergenic 25.0%
!!! TATCAAAGTGTCGAAAATAT+TGG - chr3.3:3827290-3827309 MS.gene56192:CDS 25.0%
AAAAATATTTACGGTAGGTG+TGG - chr3.3:3827449-3827468 MS.gene56192:CDS 30.0%
AAAATATTTACGGTAGGTGT+GGG - chr3.3:3827450-3827469 MS.gene56192:CDS 30.0%
ACATGAATAATTCTGTCATC+AGG + chr3.3:3828221-3828240 None:intergenic 30.0%
CAATATATTGTATGCTCTAG+GGG - chr3.3:3827977-3827996 MS.gene56192:intron 30.0%
GACAATATATTGTATGCTCT+AGG - chr3.3:3827975-3827994 MS.gene56192:intron 30.0%
GATTAGTACTAATTCTGTAC+AGG - chr3.3:3827785-3827804 MS.gene56192:CDS 30.0%
TACTAATTCTGTACAGGTAT+TGG - chr3.3:3827791-3827810 MS.gene56192:CDS 30.0%
TAGTACCTATGCTCAAATAA+GGG + chr3.3:3827430-3827449 None:intergenic 30.0%
TTAGTACCTATGCTCAAATA+AGG + chr3.3:3827431-3827450 None:intergenic 30.0%
! AATATATTGTATGCTCTAGG+GGG - chr3.3:3827978-3827997 MS.gene56192:intron 30.0%
! GAACACATGAAGTAATTTGT+AGG + chr3.3:3827386-3827405 None:intergenic 30.0%
!! ATGTATTTTTACTATGGGAC+TGG - chr3.3:3828514-3828533 MS.gene56192:CDS 30.0%
!! TTGTGCAATGGATTTGTTAA+AGG - chr3.3:3827506-3827525 MS.gene56192:CDS 30.0%
!!! AAAGTTTTATTTGCTGAAGC+AGG - chr3.3:3827149-3827168 MS.gene56192:intron 30.0%
AAAAGTGATGAAGATTGGAG+TGG - chr3.3:3828251-3828270 MS.gene56192:CDS 35.0%
AGCTTCTTAACCTTACCATT+AGG - chr3.3:3827197-3827216 MS.gene56192:intron 35.0%
AGTCTTGCAATTGTACCTAA+TGG + chr3.3:3827215-3827234 None:intergenic 35.0%
ATCATTGATCGCTCAATAGA+TGG + chr3.3:3827879-3827898 None:intergenic 35.0%
ATGGAACTAGTTACAGATGA+AGG - chr3.3:3828293-3828312 MS.gene56192:CDS 35.0%
ATTGGATCTGCTCAAGAATT+TGG - chr3.3:3827592-3827611 MS.gene56192:intron 35.0%
GAAAGATTCAAATATGGGAC+CGG - chr3.3:3827241-3827260 MS.gene56192:intron 35.0%
GAGGAAAAAGTTGTCACTAT+TGG - chr3.3:3828434-3828453 MS.gene56192:CDS 35.0%
GCAGAGTTACAGCATATTAA+AGG - chr3.3:3828575-3828594 MS.gene56192:CDS 35.0%
TGCAATTGTACCTAATGGTA+AGG + chr3.3:3827210-3827229 None:intergenic 35.0%
TTCATGTGTTCCAAAGATCA+TGG - chr3.3:3827395-3827414 MS.gene56192:CDS 35.0%
TTGAGACAACCAATTGTAAC+CGG + chr3.3:3827263-3827282 None:intergenic 35.0%
TTGGATCTGCTCAAGAATTT+GGG - chr3.3:3827593-3827612 MS.gene56192:intron 35.0%
! AACCTTTTCCTTGGTGAAAT+TGG + chr3.3:3827654-3827673 None:intergenic 35.0%
! ATTTTCTTACCACCAACTTC+AGG + chr3.3:3827950-3827969 None:intergenic 35.0%
! CAAAACTCCTCTTGATGATT+TGG - chr3.3:3828412-3828431 MS.gene56192:CDS 35.0%
! GATTTTCTAACCTTTCCACT+TGG - chr3.3:3828026-3828045 MS.gene56192:intron 35.0%
! TTTTCCTCCAAATCATCAAG+AGG + chr3.3:3828422-3828441 None:intergenic 35.0%
! TTTTCTTACCACCAACTTCA+GGG + chr3.3:3827949-3827968 None:intergenic 35.0%
!! ATATATTGTATGCTCTAGGG+GGG - chr3.3:3827979-3827998 MS.gene56192:intron 35.0%
!!! ACCTCTAACCGATTTGTTTT+TGG - chr3.3:3827845-3827864 MS.gene56192:CDS 35.0%
!!! CCTCTAACCGATTTGTTTTT+GGG - chr3.3:3827846-3827865 MS.gene56192:CDS 35.0%
!!! GAGTTTTAGGAAGGTTACAA+GGG - chr3.3:3828051-3828070 MS.gene56192:intron 35.0%
!!! TGGGGGAACTTTTTCAAAAA+TGG - chr3.3:3828274-3828293 MS.gene56192:CDS 35.0%
AAGCCTGTTCTTTGCTTCTT+TGG + chr3.3:3828150-3828169 None:intergenic 40.0%
AATATGGGACCGGTTACAAT+TGG - chr3.3:3827251-3827270 MS.gene56192:intron 40.0%
AATGACTGCCAATTTCACCA+AGG - chr3.3:3827643-3827662 MS.gene56192:intron 40.0%
ATCCAATAACGTGTGATCGA+TGG + chr3.3:3827579-3827598 None:intergenic 40.0%
ATGATCTGGTCATAGAACCA+TGG - chr3.3:3828351-3828370 MS.gene56192:CDS 40.0%
CCCAAAAACAAATCGGTTAG+AGG + chr3.3:3827849-3827868 None:intergenic 40.0%
CTTCCAAAGAAGCAAAGAAC+AGG - chr3.3:3828144-3828163 MS.gene56192:CDS 40.0%
GCAATGATGACCATGATCTT+TGG + chr3.3:3827408-3827427 None:intergenic 40.0%
GTATTTGGTTACGGATGATC+TGG - chr3.3:3828337-3828356 MS.gene56192:CDS 40.0%
TAAAACTCCACCAAGTGGAA+AGG + chr3.3:3828039-3828058 None:intergenic 40.0%
TCAACATCTGCTCTCACAAA+TGG - chr3.3:3828609-3828628 MS.gene56192:CDS 40.0%
TGCCAATTTCACCAAGGAAA+AGG - chr3.3:3827649-3827668 MS.gene56192:intron 40.0%
TGTTCAAATCACCCTGAAGT+TGG - chr3.3:3827935-3827954 MS.gene56192:intron 40.0%
TTTCTAACCTTTCCACTTGG+TGG - chr3.3:3828029-3828048 MS.gene56192:intron 40.0%
! AACTCCTCTTGATGATTTGG+AGG - chr3.3:3828415-3828434 MS.gene56192:CDS 40.0%
! CATTGCCCTTATTTGAGCAT+AGG - chr3.3:3827422-3827441 MS.gene56192:CDS 40.0%
! TGAAGCAGGCAAAGATTTTG+TGG - chr3.3:3827163-3827182 MS.gene56192:intron 40.0%
!! GAGAGTGCTGCAATAATCTT+CGG + chr3.3:3827339-3827358 None:intergenic 40.0%
!! GCAAGTGTCTTTGAAACTTC+TGG - chr3.3:3827109-3827128 MS.gene56192:CDS 40.0%
!! TATATTGTATGCTCTAGGGG+GGG - chr3.3:3827980-3827999 MS.gene56192:intron 40.0%
!! TTTCCACTTGGTGGAGTTTT+AGG - chr3.3:3828038-3828057 MS.gene56192:intron 40.0%
!!! GGAGTTTTAGGAAGGTTACA+AGG - chr3.3:3828050-3828069 MS.gene56192:intron 40.0%
ACTGTGCTAGCGAAACTGAA+CGG + chr3.3:3827487-3827506 None:intergenic 45.0%
AGTGATGAAGATTGGAGTGG+TGG - chr3.3:3828254-3828273 MS.gene56192:CDS 45.0%
CTCCATCGATCACACGTTAT+TGG - chr3.3:3827574-3827593 MS.gene56192:intron 45.0%
CTTCCTAAAACTCCACCAAG+TGG + chr3.3:3828044-3828063 None:intergenic 45.0%
GACGAAATTGGAGACAACCA+TGG + chr3.3:3828371-3828390 None:intergenic 45.0%
GTGATGAAGATTGGAGTGGT+GGG - chr3.3:3828255-3828274 MS.gene56192:CDS 45.0%
TCAAATCACCCTGAAGTTGG+TGG - chr3.3:3827938-3827957 MS.gene56192:intron 45.0%
TGATGAAGATTGGAGTGGTG+GGG - chr3.3:3828256-3828275 MS.gene56192:CDS 45.0%
!! CAAATCGGTTAGAGGTGTCT+TGG + chr3.3:3827841-3827860 None:intergenic 45.0%
!!! CACTTGGTGGAGTTTTAGGA+AGG - chr3.3:3828042-3828061 MS.gene56192:intron 45.0%
AACGTGTGATCGATGGAGTG+AGG + chr3.3:3827572-3827591 None:intergenic 50.0%
GATGAAGATTGGAGTGGTGG+GGG - chr3.3:3828257-3828276 MS.gene56192:CDS 50.0%
TCGCTAGCACAGTTGTGCAA+TGG - chr3.3:3827494-3827513 MS.gene56192:CDS 50.0%
!! TAGAGGTGTCTTGGAGAGCA+AGG + chr3.3:3827832-3827851 None:intergenic 50.0%
!! TGTCACTATTGGCGTCGACG+AGG - chr3.3:3828445-3828464 MS.gene56192:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 3827086 3828653 3827086 ID=MS.gene56192
chr3.3 mRNA 3827086 3828653 3827086 ID=MS.gene56192.t1;Parent=MS.gene56192
chr3.3 exon 3828069 3828653 3828069 ID=MS.gene56192.t1.exon1;Parent=MS.gene56192.t1
chr3.3 CDS 3828069 3828653 3828069 ID=cds.MS.gene56192.t1;Parent=MS.gene56192.t1
chr3.3 exon 3827780 3827932 3827780 ID=MS.gene56192.t1.exon2;Parent=MS.gene56192.t1
chr3.3 CDS 3827780 3827932 3827780 ID=cds.MS.gene56192.t1;Parent=MS.gene56192.t1
chr3.3 exon 3827273 3827530 3827273 ID=MS.gene56192.t1.exon3;Parent=MS.gene56192.t1
chr3.3 CDS 3827273 3827530 3827273 ID=cds.MS.gene56192.t1;Parent=MS.gene56192.t1
chr3.3 exon 3827086 3827160 3827086 ID=MS.gene56192.t1.exon4;Parent=MS.gene56192.t1
chr3.3 CDS 3827086 3827160 3827086 ID=cds.MS.gene56192.t1;Parent=MS.gene56192.t1
Gene Sequence

>MS.gene56192

ATGGCTGTTTTTCAAATTGAGGAGCAAGTGTCTTTGAAACTTCTGGTAAACACAGAAACCAACAAAGTTTTATTTGCTGAAGCAGGCAAAGATTTTGTGGACATTCTATGTAGCTTCTTAACCTTACCATTAGGTACAATTGCAAGACTTGTTCAGAAAGATTCAAATATGGGACCGGTTACAATTGGTTGTCTCAACTCTCTCTATCAAAGTGTCGAAAATATTGGATTGTTGCCGATTAATAATTCATCCGAAGATTATTGCAGCACTCTCAAAATTAATATTGATGATACTGTCCCTACAAATTACTTCATGTGTTCCAAAGATCATGGTCATCATTGCCCTTATTTGAGCATAGGTACTAAAAATATTTACGGTAGGTGTGGGAATCGTTTGAACCGTTCAGTTTCGCTAGCACAGTTGTGCAATGGATTTGTTAAAGGTGCTACGACTTTTGTCATTACTGATGATCTAATTGTCTCGCCTCACTCCATCGATCACACGTTATTGGATCTGCTCAAGAATTTGGGAATGAAAAACACAAGTTCAGTAAAAGAAATGACTGCCAATTTCACCAAGGAAAAGGTTTTATATTTGCAATTCATTTTTGTTTCCTAAATCATTGTTCTTAGTTTCTTAGTACTTGCTCTTATTCCCACTTTTGAACTTTTATTTTTCAATTCACTACTGTCTTTGATTGATTAGTACTAATTCTGTACAGGTATTGGATCTGCTTAAGTGTTCCTTGCTCTCCAAGACACCTCTAACCGATTTGTTTTTGGGAAAGAAACCATCTATTGAGCGATCAATGATTTTCTCTAGTGATGTTGAAAACATTTTTTGTAGTGATGTTCAAATCACCCTGAAGTTGGTGGTAAGAAAATCAGATGACAATATATTGTATGCTCTAGGGGGGGATGATTTTGCAAACTTGATTATAGATTTTCTAACCTTTCCACTTGGTGGAGTTTTAGGAAGGTTACAAGGGAATAATTATCTAGGTAGTATTAATGGATTGCACAAGAGCTTAACTACTTTAAGTGTAGACAAGTATTTTACTTCCAAAGAAGCAAAGAACAGGCTTCTCGAGCTACGTCTTTTGCAATATTGTTGTTATTATCAGTGTGATGCTCCTGATGACAGAATTATTCATGTTGAACTTTACAAAAGTGATGAAGATTGGAGTGGTGGGGGAACTTTTTCAAAAATGGAACTAGTTACAGATGAAGGTTATGTCAAAAGATCACAAATGTATTTGGTTACGGATGATCTGGTCATAGAACCATGGTTGTCTCCAATTTCGTCTTTATATTTGCATAATCGTTTCAAAACTCCTCTTGATGATTTGGAGGAAAAAGTTGTCACTATTGGCGTCGACGAGGTAAATATAAAAGAGTGAAAACTATATGTATTTATCACCTACACTATATGTATTTTTACTATGGGACTGGTTATGCAGCAGTTGCTCATCTCTCATTGTTGTGTTTGTGCAGAGTTACAGCATATTAAAGGCAGCTTTAAGCTCAACATCTGCTCTCACAAATGGTCTTCGTCACTTGTTAACCTAA
Protein sequence

>MS.gene56192.t1

MAVFQIEEQVSLKLLVNTETNKVLFAEAGKDFVDILCSFLTLPLGTIARLVQKDSNMGPVTIGCLNSLYQSVENIGLLPINNSSEDYCSTLKINIDDTVPTNYFMCSKDHGHHCPYLSIGTKNIYGRCGNRLNRSVSLAQLCNGFVKGATTFVITDDLIVSPHSIDHTLLDLLKNLGMKNTSSVKEMTANFTKEKVLDLLKCSLLSKTPLTDLFLGKKPSIERSMIFSSDVENIFCSDVQITLKLVCDAPDDRIIHVELYKSDEDWSGGGTFSKMELVTDEGYVKRSQMYLVTDDLVIEPWLSPISSLYLHNRFKTPLDDLEEKVVTIGVDESYSILKAALSSTSALTNGLRHLLT