AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46095

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46095.t1 MTR_7g063670 81.878 458 55 1 18 447 1 458 0.0 736
MS.gene46095.t1 MTR_3g007740 63.535 447 116 5 31 441 8 443 0.0 522
MS.gene46095.t1 MTR_7g062280 48.780 492 169 11 31 447 9 492 2.65e-138 406
MS.gene46095.t1 MTR_7g062300 49.474 475 161 10 31 439 11 472 1.12e-132 391
MS.gene46095.t1 MTR_7g063840 50.420 476 167 12 31 447 9 474 6.28e-131 386
MS.gene46095.t1 MTR_7g063920 50.667 450 167 9 31 447 10 437 2.83e-130 383
MS.gene46095.t1 MTR_7g063880 48.117 478 167 11 31 446 10 468 2.89e-127 377
MS.gene46095.t1 MTR_7g063660 48.428 477 180 10 31 447 8 478 2.77e-125 372
MS.gene46095.t1 MTR_7g063820 46.888 482 186 9 31 447 9 485 9.84e-119 355
MS.gene46095.t1 MTR_7g063830 47.702 457 177 8 31 446 9 444 3.79e-118 353
MS.gene46095.t1 MTR_7g063900 47.454 491 180 12 28 447 6 489 2.57e-117 352
MS.gene46095.t1 MTR_7g063890 44.969 487 189 11 31 446 26 504 1.51e-101 312
MS.gene46095.t1 MTR_7g066570 38.017 484 222 14 29 444 11 484 4.95e-90 284
MS.gene46095.t1 MTR_7g066480 38.938 452 197 9 33 446 17 427 7.34e-84 264
MS.gene46095.t1 MTR_7g066260 38.326 454 223 9 33 438 16 460 9.57e-82 261
MS.gene46095.t1 MTR_7g066410 36.078 510 220 13 33 442 11 514 1.99e-80 258
MS.gene46095.t1 MTR_7g066490 38.816 456 191 11 26 446 11 413 1.76e-78 250
MS.gene46095.t1 MTR_7g066430 37.067 491 216 9 33 440 5 485 1.87e-78 252
MS.gene46095.t1 MTR_7g012680 36.875 480 204 12 29 447 11 452 6.87e-76 244
MS.gene46095.t1 MTR_7g063690 54.032 248 88 3 21 268 1 222 1.11e-74 234
MS.gene46095.t1 MTR_7g058710 36.531 490 224 13 30 447 10 484 7.37e-74 240
MS.gene46095.t1 MTR_7g066340 36.184 456 236 10 29 440 9 453 9.00e-74 239
MS.gene46095.t1 MTR_3g065200 37.665 454 175 17 33 427 4 408 5.02e-71 232
MS.gene46095.t1 MTR_7g066350 35.991 464 240 12 29 447 6 457 1.82e-68 225
MS.gene46095.t1 MTR_7g058700 37.054 448 188 11 44 447 531 928 2.28e-67 231
MS.gene46095.t1 MTR_1g041315 35.808 458 223 15 25 424 7 451 3.25e-67 223
MS.gene46095.t1 MTR_7g066580 34.924 461 232 11 38 443 1 448 5.81e-67 221
MS.gene46095.t1 MTR_7g066360 36.807 451 220 13 33 437 15 446 2.59e-66 220
MS.gene46095.t1 MTR_7g066290 35.129 464 221 10 22 440 5 433 4.32e-65 216
MS.gene46095.t1 MTR_7g066400 33.929 448 225 13 33 436 13 433 1.04e-63 212
MS.gene46095.t1 MTR_7g066310 33.718 433 209 11 29 438 4 381 9.93e-60 201
MS.gene46095.t1 MTR_4g019310 33.130 492 245 16 35 447 11 497 6.90e-59 201
MS.gene46095.t1 MTR_2g029400 33.183 443 207 12 29 430 11 405 1.35e-53 184
MS.gene46095.t1 MTR_7g063850 40.523 306 139 7 166 446 1 288 7.61e-51 174
MS.gene46095.t1 MTR_7g063720 44.355 248 105 7 218 447 1 233 2.34e-50 171
MS.gene46095.t1 MTR_7g063720 27.586 203 117 8 34 213 25 220 4.05e-12 66.2
MS.gene46095.t1 MTR_4g017470 30.689 479 252 13 33 446 13 476 1.38e-42 157
MS.gene46095.t1 MTR_4g017410 29.918 488 261 14 33 446 10 490 1.31e-39 149
MS.gene46095.t1 MTR_4g017610 30.108 465 257 14 35 436 16 475 4.90e-39 147
MS.gene46095.t1 MTR_7g063760 86.486 74 10 0 374 447 1 74 5.54e-38 132
MS.gene46095.t1 MTR_7g062270 41.573 178 68 3 33 174 11 188 2.52e-37 140
MS.gene46095.t1 MTR_4g019340 28.750 480 260 15 24 428 29 501 3.18e-37 142
MS.gene46095.t1 MTR_8g023240 26.374 455 271 12 32 432 37 481 2.62e-35 138
MS.gene46095.t1 MTR_7g066280 29.657 408 201 11 100 440 2 390 5.27e-34 132
MS.gene46095.t1 MTR_4g017440 27.435 503 267 15 33 446 15 508 1.99e-33 132
MS.gene46095.t1 MTR_1g014060 39.423 208 86 4 45 214 13 218 8.68e-33 128
MS.gene46095.t1 MTR_1g014060 35.417 192 99 4 271 447 210 391 4.80e-21 95.1
MS.gene46095.t1 MTR_4g017830 31.562 320 171 9 31 303 11 329 1.33e-32 130
MS.gene46095.t1 MTR_7g100420 33.439 314 171 7 147 436 94 393 1.88e-31 124
MS.gene46095.t1 MTR_7g100420 76.744 43 10 0 33 75 40 82 4.63e-12 67.8
MS.gene46095.t1 MTR_7g066680 34.098 305 130 10 196 436 37 334 3.57e-30 120
MS.gene46095.t1 MTR_7g063750 79.104 67 14 0 351 417 1 67 7.09e-28 110
MS.gene46095.t1 MTR_7g063870 39.645 169 57 3 35 203 34 157 4.66e-24 101
MS.gene46095.t1 MTR_4g017550 26.681 461 244 18 61 437 20 470 1.59e-23 103
MS.gene46095.t1 MTR_4g017550 33.913 115 65 3 35 143 250 359 1.06e-11 67.0
MS.gene46095.t1 MTR_8g445860 30.702 228 108 7 33 216 14 235 3.53e-17 81.3
MS.gene46095.t1 MTR_7g066390 33.974 156 66 3 283 438 2 120 5.28e-14 69.7
MS.gene46095.t1 MTR_2g067310 34.286 140 75 4 38 170 53 182 9.71e-14 71.2
MS.gene46095.t1 MTR_1g115455 28.632 234 104 8 33 216 10 230 1.31e-12 67.8
MS.gene46095.t1 MTR_1g115450 33.051 118 63 4 33 141 8 118 7.87e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46095.t1 AT5G01130 31.116 466 246 16 33 447 10 451 2.06e-48 172
MS.gene46095.t1 AT3G09110 32.484 314 169 6 34 306 11 322 5.59e-44 157
MS.gene46095.t1 AT5G01120 29.132 484 257 12 32 436 9 485 1.22e-43 160
MS.gene46095.t1 AT5G43240 28.629 496 248 14 32 436 9 489 7.11e-40 150
MS.gene46095.t1 AT5G43240 28.629 496 248 14 32 436 9 489 7.11e-40 150
MS.gene46095.t1 AT5G43240 28.629 496 248 14 32 436 9 489 7.11e-40 150
MS.gene46095.t1 AT3G09140 29.234 496 261 16 33 445 10 498 2.52e-39 148
MS.gene46095.t1 AT5G01140 27.368 475 257 15 34 447 11 458 3.14e-36 139
MS.gene46095.t1 AT5G01150 31.385 325 162 7 34 305 11 327 5.77e-36 139
MS.gene46095.t1 AT3G09120 32.099 324 152 10 29 296 3 314 8.20e-36 134
MS.gene46095.t1 AT3G09140 27.533 523 263 16 33 445 10 526 5.14e-35 137
MS.gene46095.t1 AT5G37320 27.311 476 278 14 32 442 9 481 6.64e-31 124

Find 58 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATCTGACCAACAATTT+TGG 0.151610 7.2:-41602520 MS.gene46095:CDS
CTATCAAAGTGTTGAAAATA+TGG 0.172991 7.2:-41602845 MS.gene46095:CDS
TGATGAAGATTGCAGGGATA+TGG 0.249095 7.2:-41601910 MS.gene46095:CDS
AAGTCTGTTCTTTGCTTCTT+TGG 0.252503 7.2:+41601995 None:intergenic
TCCGTAACCACATACATTTC+TGG 0.265897 7.2:+41601810 None:intergenic
AGTTCTTTCGTCAGTATTGA+TGG 0.308626 7.2:-41602065 MS.gene46095:CDS
AGTAGTGTCTTTGAAACTTC+TGG 0.309230 7.2:-41603025 MS.gene46095:CDS
AACAAAATCTTTATCTGCTT+CGG 0.321742 7.2:+41602972 None:intergenic
CAAAACTTCTCTTAATGATC+TGG 0.348610 7.2:-41601727 MS.gene46095:CDS
GGTCTCTTGACACAACTTCC+AGG 0.352133 7.2:+41601831 None:intergenic
AGTATATATATAGATGAAAC+TGG 0.371045 7.2:+41601759 None:intergenic
TTGAGACAACCAATTGTAAC+TGG 0.379686 7.2:+41602874 None:intergenic
GGAGTTCTACGCAACTTAGA+AGG 0.389827 7.2:-41602092 MS.gene46095:CDS
AAACTTTAGCAAAATGCAAT+TGG 0.403747 7.2:-41601886 MS.gene46095:CDS
ACCAGAAATGTATGTGGTTA+CGG 0.427323 7.2:-41601811 MS.gene46095:CDS
TATCAAAGTGTTGAAAATAT+GGG 0.428829 7.2:-41602844 MS.gene46095:CDS
ATAAAAGAAGTCTTCATACT+TGG 0.436601 7.2:+41602729 None:intergenic
AGCTTCTTAACATTACCATT+AGG 0.442668 7.2:-41602937 MS.gene46095:CDS
ACACCGCATGCAGGAAGTCC+TGG 0.443991 7.2:-41601849 MS.gene46095:CDS
AACTGTCTTGCCGCATTCCA+TGG 0.447531 7.2:-41602554 MS.gene46095:CDS
GATGAAGATTGCAGGGATAT+GGG 0.448666 7.2:-41601909 MS.gene46095:CDS
AGTCTTGCAATGGTTCCTAA+TGG 0.456662 7.2:+41602922 None:intergenic
CACATCGGTTAGGGGTGTCT+TGG 0.466015 7.2:+41602304 None:intergenic
GGAACATATAAAGTACTTTG+TGG 0.467805 7.2:+41602750 None:intergenic
AATATCGAACCAGTTACAAT+TGG 0.468192 7.2:-41602883 MS.gene46095:CDS
GCAGAGTCACAGCATATTCA+AGG 0.477264 7.2:-41601404 MS.gene46095:intron
GAACATATAAAGTACTTTGT+GGG 0.479237 7.2:+41602751 None:intergenic
CTTGTTAACACAAATTAAGA+AGG 0.481190 7.2:-41601338 MS.gene46095:CDS
CAATGCTCTTATTTGAGCAT+AGG 0.498826 7.2:-41602706 MS.gene46095:intron
TCCTGCATGCGGTGTGGCAA+TGG 0.507826 7.2:+41601857 None:intergenic
GATAGTATATTGTATGCTCA+AGG 0.514909 7.2:-41602167 MS.gene46095:CDS
AAAGACACTACTTCCACTCT+AGG 0.519879 7.2:+41603036 None:intergenic
TCAACGTCTGCTCTAACAAA+TGG 0.520066 7.2:-41601370 MS.gene46095:CDS
ATCAAAGATCGTGTGATCCA+TGG 0.521919 7.2:+41602537 None:intergenic
AATTACCTCTTTGATGCCAA+TGG 0.525143 7.2:+41601689 None:intergenic
GGTCAATGTCACAAAGGAAA+AGG 0.529128 7.2:-41602464 MS.gene46095:intron
CAATATTAATCTTGAGATTG+CGG 0.534825 7.2:+41602785 None:intergenic
TAATTTGTGTTAACAAGTGA+CGG 0.537543 7.2:+41601344 None:intergenic
ACCATTGCCACACCGCATGC+AGG 0.566470 7.2:-41601858 MS.gene46095:CDS
AACCTCGTATCGAGAGATCA+AGG 0.573455 7.2:-41602268 MS.gene46095:CDS
TAGTATATTGTATGCTCAAG+GGG 0.574877 7.2:-41602165 MS.gene46095:CDS
TTTCTGAATAAGTCTTGCAA+TGG 0.578241 7.2:+41602912 None:intergenic
GAGTTCTACGCAACTTAGAA+GGG 0.584426 7.2:-41602091 MS.gene46095:CDS
AACTTCTCTTAATGATCTGG+AGG 0.587581 7.2:-41601724 MS.gene46095:CDS
ATAGTATATTGTATGCTCAA+GGG 0.590230 7.2:-41602166 MS.gene46095:CDS
TTGCGTAGAACTCCACCCAA+TGG 0.598502 7.2:+41602101 None:intergenic
AAGTTCGATCAAAGAAATGA+CGG 0.602195 7.2:-41602485 MS.gene46095:CDS
TCTTCGATTATATCCTAGAG+TGG 0.613545 7.2:-41603049 MS.gene46095:CDS
ATCCTTGATCTCTCGATACG+AGG 0.621136 7.2:+41602266 None:intergenic
AGGACTTCCTGCATGCGGTG+TGG 0.622997 7.2:+41601851 None:intergenic
CAAGAGACCAGAAATGTATG+TGG 0.625409 7.2:-41601817 MS.gene46095:CDS
ATCGTGTGATCCATGGAATG+CGG 0.667948 7.2:+41602544 None:intergenic
TGTCACCATTGGCATCAAAG+AGG 0.672938 7.2:-41601694 MS.gene46095:intron
CTTCCAGGACTTCCTGCATG+CGG 0.682890 7.2:+41601846 None:intergenic
AATGACGGTCAATGTCACAA+AGG 0.683087 7.2:-41602470 MS.gene46095:CDS
AGTATATTGTATGCTCAAGG+GGG 0.692419 7.2:-41602164 MS.gene46095:CDS
GTATATTGTATGCTCAAGGG+GGG 0.692996 7.2:-41602163 MS.gene46095:CDS
GATGAAACTGGAGACAACAA+CGG 0.697583 7.2:+41601771 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATATATATAGATGAAAC+TGG + chr7.2:41602691-41602710 None:intergenic 20.0%
!! ATGAATATCATCACTAAAAA+TGG + chr7.2:41602227-41602246 None:intergenic 20.0%
!!! AGTGTTTTTCAATATTATTG+TGG - chr7.2:41602484-41602503 MS.gene46095:CDS 20.0%
!!! ATACTTTTCTTCGTTTAAAT+CGG + chr7.2:41602425-41602444 None:intergenic 20.0%
!!! TATCAAAGTGTTGAAAATAT+GGG - chr7.2:41601603-41601622 MS.gene46095:intron 20.0%
! AAACTTTAGCAAAATGCAAT+TGG - chr7.2:41602561-41602580 MS.gene46095:CDS 25.0%
! AAAGACTAAAAAGTGAATTG+AGG + chr7.2:41602066-41602085 None:intergenic 25.0%
! AAATAATATTCTGCAGGTAT+TGG - chr7.2:41602096-41602115 MS.gene46095:CDS 25.0%
! AACAAAATCTTTATCTGCTT+CGG + chr7.2:41601478-41601497 None:intergenic 25.0%
! ATAAAAGAAGTCTTCATACT+TGG + chr7.2:41601721-41601740 None:intergenic 25.0%
! ATAGTATATTGTATGCTCAA+GGG - chr7.2:41602281-41602300 MS.gene46095:CDS 25.0%
! ATCAAAGTGGTAATTATGTA+AGG - chr7.2:41602796-41602815 MS.gene46095:CDS 25.0%
! CAATATTAATCTTGAGATTG+CGG + chr7.2:41601665-41601684 None:intergenic 25.0%
! CTTGTTAACACAAATTAAGA+AGG - chr7.2:41603109-41603128 MS.gene46095:CDS 25.0%
! GATTAGAAATAATATTCTGC+AGG - chr7.2:41602090-41602109 MS.gene46095:CDS 25.0%
!! GAACATATAAAGTACTTTGT+GGG + chr7.2:41601699-41601718 None:intergenic 25.0%
!! GCTTTTTATTCCAAAATTGT+TGG + chr7.2:41601940-41601959 None:intergenic 25.0%
!! TAATTTGTGTTAACAAGTGA+CGG + chr7.2:41603106-41603125 None:intergenic 25.0%
!! TTTTTGACAAGAAATCAAAG+TGG - chr7.2:41602783-41602802 MS.gene46095:CDS 25.0%
!!! AATACAAGTTTTGTCATTAG+CGG - chr7.2:41601864-41601883 MS.gene46095:CDS 25.0%
!!! ACGTTTTTTAACATTTCCAT+TGG - chr7.2:41602330-41602349 MS.gene46095:CDS 25.0%
!!! CGTTTTTTAACATTTCCATT+GGG - chr7.2:41602331-41602350 MS.gene46095:CDS 25.0%
!!! CTATCAAAGTGTTGAAAATA+TGG - chr7.2:41601602-41601621 MS.gene46095:intron 25.0%
AAAAACTGATGAAGATTGCA+GGG - chr7.2:41602531-41602550 MS.gene46095:CDS 30.0%
AAAAATTGTTGTCCATTCTG+TGG - chr7.2:41601771-41601790 MS.gene46095:CDS 30.0%
AAAATTGTTGTCCATTCTGT+GGG - chr7.2:41601772-41601791 MS.gene46095:CDS 30.0%
AAATTGTCTGGAAAACTGAA+AGG + chr7.2:41601821-41601840 None:intergenic 30.0%
AAGTTCGATCAAAGAAATGA+CGG - chr7.2:41601962-41601981 MS.gene46095:CDS 30.0%
AATATCGAACCAGTTACAAT+TGG - chr7.2:41601564-41601583 MS.gene46095:intron 30.0%
AATTGTCTGGAAAACTGAAA+GGG + chr7.2:41601820-41601839 None:intergenic 30.0%
AGCTTCTTAACATTACCATT+AGG - chr7.2:41601510-41601529 MS.gene46095:intron 30.0%
ATCCTAAGCAAAAAATTGTC+TGG + chr7.2:41601833-41601852 None:intergenic 30.0%
CAAAACTTCTCTTAATGATC+TGG - chr7.2:41602720-41602739 MS.gene46095:CDS 30.0%
GAGGAATACAACTTAAAAAG+TGG + chr7.2:41602047-41602066 None:intergenic 30.0%
GATAGTATATTGTATGCTCA+AGG - chr7.2:41602280-41602299 MS.gene46095:CDS 30.0%
TAAAAACTGATGAAGATTGC+AGG - chr7.2:41602530-41602549 MS.gene46095:CDS 30.0%
TAGTATATTGTATGCTCAAG+GGG - chr7.2:41602282-41602301 MS.gene46095:CDS 30.0%
TTTCATGCCTAAAAACACAT+CGG + chr7.2:41602161-41602180 None:intergenic 30.0%
TTTCTGAATAAGTCTTGCAA+TGG + chr7.2:41601538-41601557 None:intergenic 30.0%
! GGAACATATAAAGTACTTTG+TGG + chr7.2:41601700-41601719 None:intergenic 30.0%
! TTATCACCTTCACTATTTTG+CGG - chr7.2:41602837-41602856 MS.gene46095:CDS 30.0%
! TTTGATCTGACCAACAATTT+TGG - chr7.2:41601927-41601946 MS.gene46095:CDS 30.0%
! TTTTTAACATTTCCATTGGG+TGG - chr7.2:41602334-41602353 MS.gene46095:CDS 30.0%
!! TTTTCTGATAACTAGCTTCA+CGG + chr7.2:41602254-41602273 None:intergenic 30.0%
!!! TTCCAGACAATTTTTTGCTT+AGG - chr7.2:41601828-41601847 MS.gene46095:CDS 30.0%
AACTTCTCTTAATGATCTGG+AGG - chr7.2:41602723-41602742 MS.gene46095:CDS 35.0%
AAGTCTGTTCTTTGCTTCTT+TGG + chr7.2:41602455-41602474 None:intergenic 35.0%
AATTACCTCTTTGATGCCAA+TGG + chr7.2:41602761-41602780 None:intergenic 35.0%
ACCAGAAATGTATGTGGTTA+CGG - chr7.2:41602636-41602655 MS.gene46095:intron 35.0%
AGTATATTGTATGCTCAAGG+GGG - chr7.2:41602283-41602302 MS.gene46095:CDS 35.0%
TCTTCGATTATATCCTAGAG+TGG - chr7.2:41601398-41601417 MS.gene46095:CDS 35.0%
TTGAGACAACCAATTGTAAC+TGG + chr7.2:41601576-41601595 None:intergenic 35.0%
! AGTTCTTTCGTCAGTATTGA+TGG - chr7.2:41602382-41602401 MS.gene46095:intron 35.0%
! CAATGCTCTTATTTGAGCAT+AGG - chr7.2:41601741-41601760 MS.gene46095:CDS 35.0%
!! AGTAGTGTCTTTGAAACTTC+TGG - chr7.2:41601422-41601441 MS.gene46095:intron 35.0%
AAAGACACTACTTCCACTCT+AGG + chr7.2:41601414-41601433 None:intergenic 40.0%
AATGACGGTCAATGTCACAA+AGG - chr7.2:41601977-41601996 MS.gene46095:CDS 40.0%
ACACAACCGCAAAATAGTGA+AGG + chr7.2:41602846-41602865 None:intergenic 40.0%
AGTCTTGCAATGGTTCCTAA+TGG + chr7.2:41601528-41601547 None:intergenic 40.0%
ATCAAAGATCGTGTGATCCA+TGG + chr7.2:41601913-41601932 None:intergenic 40.0%
CAAGAGACCAGAAATGTATG+TGG - chr7.2:41602630-41602649 MS.gene46095:intron 40.0%
GAGGAAAAAGTTGTCACCAT+TGG - chr7.2:41602742-41602761 MS.gene46095:CDS 40.0%
GAGTTCTACGCAACTTAGAA+GGG - chr7.2:41602356-41602375 MS.gene46095:intron 40.0%
GATGAAACTGGAGACAACAA+CGG + chr7.2:41602679-41602698 None:intergenic 40.0%
GATGAAGATTGCAGGGATAT+GGG - chr7.2:41602538-41602557 MS.gene46095:CDS 40.0%
GGTCAATGTCACAAAGGAAA+AGG - chr7.2:41601983-41602002 MS.gene46095:CDS 40.0%
GTATATTGTATGCTCAAGGG+GGG - chr7.2:41602284-41602303 MS.gene46095:CDS 40.0%
TCAACGTCTGCTCTAACAAA+TGG - chr7.2:41603077-41603096 MS.gene46095:CDS 40.0%
TCCGTAACCACATACATTTC+TGG + chr7.2:41602640-41602659 None:intergenic 40.0%
TGATGAAGATTGCAGGGATA+TGG - chr7.2:41602537-41602556 MS.gene46095:CDS 40.0%
! CCTAAAAACACATCGGTTAG+GGG + chr7.2:41602154-41602173 None:intergenic 40.0%
! GCCTAAAAACACATCGGTTA+GGG + chr7.2:41602155-41602174 None:intergenic 40.0%
! TGCCTAAAAACACATCGGTT+AGG + chr7.2:41602156-41602175 None:intergenic 40.0%
AACCTCGTATCGAGAGATCA+AGG - chr7.2:41602179-41602198 MS.gene46095:CDS 45.0%
ATCCTTGATCTCTCGATACG+AGG + chr7.2:41602184-41602203 None:intergenic 45.0%
ATCGTGTGATCCATGGAATG+CGG + chr7.2:41601906-41601925 None:intergenic 45.0%
GCAGAGTCACAGCATATTCA+AGG - chr7.2:41603043-41603062 MS.gene46095:CDS 45.0%
GGAGTTCTACGCAACTTAGA+AGG - chr7.2:41602355-41602374 MS.gene46095:intron 45.0%
TGTCACCATTGGCATCAAAG+AGG - chr7.2:41602753-41602772 MS.gene46095:CDS 45.0%
! CCCCTAACCGATGTGTTTTT+AGG - chr7.2:41602151-41602170 MS.gene46095:CDS 45.0%
! GACAATGGATTCCCACAGAA+TGG + chr7.2:41601786-41601805 None:intergenic 45.0%
AACTGTCTTGCCGCATTCCA+TGG - chr7.2:41601893-41601912 MS.gene46095:CDS 50.0%
AGGGAAACTGAACGCGACAA+TGG + chr7.2:41601801-41601820 None:intergenic 50.0%
GGTCTCTTGACACAACTTCC+AGG + chr7.2:41602619-41602638 None:intergenic 50.0%
TTGCGTAGAACTCCACCCAA+TGG + chr7.2:41602349-41602368 None:intergenic 50.0%
CTTCCAGGACTTCCTGCATG+CGG + chr7.2:41602604-41602623 None:intergenic 55.0%
!! CACATCGGTTAGGGGTGTCT+TGG + chr7.2:41602146-41602165 None:intergenic 55.0%
ACACCGCATGCAGGAAGTCC+TGG - chr7.2:41602598-41602617 MS.gene46095:CDS 60.0%
ACCATTGCCACACCGCATGC+AGG - chr7.2:41602589-41602608 MS.gene46095:CDS 60.0%
AGGACTTCCTGCATGCGGTG+TGG + chr7.2:41602599-41602618 None:intergenic 60.0%
TCCTGCATGCGGTGTGGCAA+TGG + chr7.2:41602593-41602612 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41601330 41603139 41601330 ID=MS.gene46095
chr7.2 mRNA 41601330 41603139 41601330 ID=MS.gene46095.t1;Parent=MS.gene46095
chr7.2 exon 41602707 41603139 41602707 ID=MS.gene46095.t1.exon1;Parent=MS.gene46095.t1
chr7.2 CDS 41602707 41603139 41602707 ID=cds.MS.gene46095.t1;Parent=MS.gene46095.t1
chr7.2 exon 41602465 41602619 41602465 ID=MS.gene46095.t1.exon2;Parent=MS.gene46095.t1
chr7.2 CDS 41602465 41602619 41602465 ID=cds.MS.gene46095.t1;Parent=MS.gene46095.t1
chr7.2 exon 41601695 41602357 41601695 ID=MS.gene46095.t1.exon3;Parent=MS.gene46095.t1
chr7.2 CDS 41601695 41602357 41601695 ID=cds.MS.gene46095.t1;Parent=MS.gene46095.t1
chr7.2 exon 41601330 41601422 41601330 ID=MS.gene46095.t1.exon4;Parent=MS.gene46095.t1
chr7.2 CDS 41601330 41601422 41601330 ID=cds.MS.gene46095.t1;Parent=MS.gene46095.t1
Gene Sequence

>MS.gene46095

ATGCTTCTTTCTTTTCTTTCACGTTTGATTTCTCGTTTGATAGCTGCTATCATGAGATTCATGATTGTTCTTCGATTATATCCTAGAGTGGAAGTAGTGTCTTTGAAACTTCTGGTAAACACAGACACTAACAAAGTTTTATTTGCCGAAGCAGATAAAGATTTTGTTGACATTCTCTGTAGCTTCTTAACATTACCATTAGGAACCATTGCAAGACTTATTCAGAAAAAGTCGAATATCGAACCAGTTACAATTGGTTGTCTCAACTCTCTCTATCAAAGTGTTGAAAATATGGGTTTGTTCACAGATTATAACTCATCTGAAGATTATTGCCGCAATCTCAAGATTAATATTGATGACTCTCAGCCCACAAAGTACTTTATATGTTCCAAGTATGAAGACTTCTTTTATCAATGCTCTTATTTGAGCATAGGTGAAAAGAAAAATTGTTGTCCATTCTGTGGGAATCCATTGTCGCGTTCAGTTTCCCTTTCAGTTTTCCAGACAATTTTTTGCTTAGGATTTGTGAAGTTTAATACAAGTTTTGTCATTAGCGGTGATTTAACTGTCTTGCCGCATTCCATGGATCACACGATCTTTGATCTGACCAACAATTTTGGAATAAAAAGCACAAGTTCGATCAAAGAAATGACGGTCAATGTCACAAAGGAAAAGGTTCACTATTCTTTGTTTCTTAGTAATTGCTCTAGTTTGCCACTTTTTAAGTTGTATTCCTCAATTCACTTTTTAGTCTTTGATTGATTAGAAATAATATTCTGCAGGTATTGGATCTGTTAAAGTGTTCATTGTTTTCCAAGACACCCCTAACCGATGTGTTTTTAGGCATGAAACCTCGTATCGAGAGATCAAGGATTTTCGCTGATGATGTTAAAACCATTTTTAGTGATGATATTCATATCACCGTGAAGCTAGTTATCAGAAAATCTGATGATAGTATATTGTATGCTCAAGGGGGGCATGATTTTGCAGAGTTAATTATACGTTTTTTAACATTTCCATTGGGTGGAGTTCTACGCAACTTAGAAGGGAATAGTTCTTTCGTCAGTATTGATGGATTGTGCAAGAGCATAGCCGATTTAAACGAAGAAAAGTATTTCATATCCAAAGAAGCAAAGAACAGACTTCTCAAGCTAAGTGTTTTTCAATATTATTGTGGAAAATCAACTGATCTCACACTTCTAAAAACTGATGAAGATTGCAGGGATATGGGAAACTTTAGCAAAATGCAATTGGCTAATACCATTGCCACACCGCATGCAGGAAGTCCTGGAAGTTGTGTCAAGAGACCAGAAATGTATGTGGTTACGGATGATCTGATCGTAGAACCGTTGTTGTCTCCAGTTTCATCTATATATATACTTCAACGTTTCAAAACTTCTCTTAATGATCTGGAGGAAAAAGTTGTCACCATTGGCATCAAAGAGGTAATTATTTTTTGACAAGAAATCAAAGTGGTAATTATGTAAGGAGTGAAAACAATATAGATTTATCACCTTCACTATTTTGCGGTTGTGTTGAAGTTTTCATACTACACTGATTTACTATGAAACTTATTGAAGATATAGTTAGTAGTCATTTACTCGTTAGAAATTAGTAGTTTGCTATTCGTTTCTAACTAATGAATGACTACTAACTATATCATCAACAAGATTAATTATGTAGCAATAGCTCATCTCACATTGTTGTGTTTGTGCAGAGTCACAGCATATTCAAGGCAGCTTTAAGCTCAACGTCTGCTCTAACAAATGGTCTCCGTCACTTGTTAACACAAATTAAGAAGGAGAAATGA
Protein sequence

>MS.gene46095.t1

MLLSFLSRLISRLIAAIMRFMIVLRLYPRVEVVSLKLLVNTDTNKVLFAEADKDFVDILCSFLTLPLGTIARLIQKKSNIEPVTIGCLNSLYQSVENMGLFTDYNSSEDYCRNLKINIDDSQPTKYFICSKYEDFFYQCSYLSIGFVKFNTSFVISGDLTVLPHSMDHTIFDLTNNFGIKSTSSIKEMTVNVTKEKVLDLLKCSLFSKTPLTDVFLGMKPRIERSRIFADDVKTIFSDDIHITVKLVIRKSDDSILYAQGGHDFAELIIRFLTFPLGGVLRNLEGNSSFVSIDGLCKSIADLNEEKYFISKEAKNRLLKLSVFQYYCGKSTDLTLLKTDEDCRDMGNFSKMQLANTIATPHAGSPGSCVKRPEMYVVTDDLIVEPLLSPVSSIYILQRFKTSLNDLEEKVVTIGIKESHSIFKAALSSTSALTNGLRHLLTQIKKEK