AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84607

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84607.t1 MTR_7g066340 80.124 483 86 3 1 480 1 476 0.0 764
MS.gene84607.t1 MTR_7g066310 68.644 472 79 4 9 480 4 406 0.0 619
MS.gene84607.t1 MTR_7g066350 64.407 472 143 8 1 461 1 458 0.0 560
MS.gene84607.t1 MTR_1g041315 64.865 444 144 5 8 441 10 451 0.0 557
MS.gene84607.t1 MTR_7g066280 64.091 440 81 3 91 480 1 413 0.0 538
MS.gene84607.t1 MTR_7g066280 25.758 264 136 10 8 236 146 384 3.67e-11 65.5
MS.gene84607.t1 MTR_7g066260 57.980 495 177 11 6 480 9 492 0.0 522
MS.gene84607.t1 MTR_7g066570 56.064 503 168 9 6 472 8 493 1.14e-171 495
MS.gene84607.t1 MTR_7g066400 56.681 464 161 5 1 454 1 434 1.40e-170 488
MS.gene84607.t1 MTR_7g066360 53.360 491 192 9 6 479 8 478 9.71e-155 449
MS.gene84607.t1 MTR_7g012680 53.782 476 176 7 3 463 5 451 2.43e-154 446
MS.gene84607.t1 MTR_7g066290 55.338 459 166 9 6 458 9 434 5.75e-152 440
MS.gene84607.t1 MTR_7g058710 48.303 501 191 11 1 457 1 477 7.07e-139 408
MS.gene84607.t1 MTR_7g066580 47.773 494 163 14 18 463 1 447 1.41e-131 388
MS.gene84607.t1 MTR_7g066410 40.039 507 239 9 12 457 10 512 1.59e-115 350
MS.gene84607.t1 MTR_7g058700 46.980 447 168 7 24 457 531 921 7.58e-115 360
MS.gene84607.t1 MTR_7g066430 41.498 494 229 12 12 457 4 485 7.83e-111 337
MS.gene84607.t1 MTR_2g029400 44.000 475 152 10 6 445 8 403 6.70e-108 326
MS.gene84607.t1 MTR_2g029400 28.643 199 113 7 260 451 7 183 4.55e-11 65.1
MS.gene84607.t1 MTR_7g066480 41.009 456 215 10 11 459 15 423 1.51e-98 303
MS.gene84607.t1 MTR_7g066490 42.035 452 200 12 12 459 16 409 4.72e-98 301
MS.gene84607.t1 MTR_7g063660 36.983 484 254 9 8 457 5 471 1.50e-94 294
MS.gene84607.t1 MTR_7g062300 38.272 486 250 13 1 453 1 469 1.23e-93 292
MS.gene84607.t1 MTR_7g062280 37.172 495 245 12 11 457 9 485 3.72e-92 289
MS.gene84607.t1 MTR_7g063900 40.574 488 233 13 12 457 10 482 3.49e-91 286
MS.gene84607.t1 MTR_7g063820 37.728 493 248 12 6 457 4 478 1.01e-87 277
MS.gene84607.t1 MTR_7g063880 38.784 477 240 13 11 458 10 463 2.54e-87 275
MS.gene84607.t1 MTR_7g063890 38.600 500 251 12 6 464 21 505 2.78e-86 274
MS.gene84607.t1 MTR_7g063840 37.014 489 254 13 1 457 1 467 2.11e-84 268
MS.gene84607.t1 MTR_7g063920 36.864 472 222 10 11 457 10 430 4.93e-83 263
MS.gene84607.t1 MTR_7g063830 36.876 461 242 12 13 457 11 438 7.91e-81 258
MS.gene84607.t1 MTR_3g007740 38.528 462 242 13 11 457 8 442 3.32e-78 251
MS.gene84607.t1 MTR_4g017440 34.556 518 256 15 6 457 2 502 5.96e-78 252
MS.gene84607.t1 MTR_4g019310 33.988 509 257 16 1 453 1 486 7.20e-78 252
MS.gene84607.t1 MTR_3g065200 37.473 467 197 14 12 444 3 408 2.27e-77 249
MS.gene84607.t1 MTR_4g017830 33.837 529 272 14 1 468 1 512 3.26e-77 251
MS.gene84607.t1 MTR_4g019340 34.719 481 250 11 13 446 39 502 3.40e-75 245
MS.gene84607.t1 MTR_4g019340 29.646 226 127 8 12 231 303 502 9.91e-15 76.6
MS.gene84607.t1 MTR_4g017610 34.021 485 251 13 15 454 16 476 7.47e-74 241
MS.gene84607.t1 MTR_7g063670 35.608 469 245 12 13 457 16 451 9.66e-73 237
MS.gene84607.t1 MTR_4g017410 33.534 498 269 14 6 457 3 484 5.04e-71 234
MS.gene84607.t1 MTR_7g066680 45.141 319 108 6 210 465 28 342 1.13e-70 228
MS.gene84607.t1 MTR_7g066680 28.774 212 135 7 8 212 82 284 1.12e-13 72.4
MS.gene84607.t1 MTR_1g014060 54.911 224 90 5 21 242 9 223 4.12e-68 223
MS.gene84607.t1 MTR_1g014060 45.604 182 83 3 297 463 210 390 6.24e-36 137
MS.gene84607.t1 MTR_4g017470 29.831 533 265 11 1 472 1 485 2.23e-59 203
MS.gene84607.t1 MTR_4g017550 31.809 481 237 18 39 455 18 471 7.57e-53 185
MS.gene84607.t1 MTR_4g017550 30.252 238 119 9 5 218 240 454 1.24e-18 88.6
MS.gene84607.t1 MTR_7g066390 53.165 158 46 1 308 465 1 130 2.78e-45 155
MS.gene84607.t1 MTR_7g062270 44.253 174 90 4 13 183 11 180 2.02e-39 147
MS.gene84607.t1 MTR_7g063720 36.275 204 117 3 267 457 23 226 4.82e-35 131
MS.gene84607.t1 MTR_7g063720 27.434 226 135 8 12 236 23 220 3.64e-17 81.3
MS.gene84607.t1 MTR_2g067310 46.243 173 53 4 23 195 58 190 3.14e-34 129
MS.gene84607.t1 MTR_8g023240 24.444 495 292 19 26 475 51 508 9.48e-28 116
MS.gene84607.t1 MTR_7g063850 29.260 311 152 9 184 457 3 282 4.41e-27 110
MS.gene84607.t1 MTR_7g063690 30.035 283 124 7 13 294 13 222 2.29e-26 107
MS.gene84607.t1 MTR_7g100420 31.515 330 164 9 164 457 94 397 4.42e-26 110
MS.gene84607.t1 MTR_7g100420 46.154 91 36 3 6 83 26 116 1.40e-12 69.7
MS.gene84607.t1 MTR_1g115440 33.603 247 130 8 11 241 10 238 4.49e-26 106
MS.gene84607.t1 MTR_8g445860 30.833 240 143 6 12 242 13 238 6.15e-23 97.8
MS.gene84607.t1 MTR_8g445860 31.111 225 112 6 265 450 11 231 3.34e-20 90.1
MS.gene84607.t1 MTR_0150s0010 30.222 225 117 5 265 450 8 231 1.97e-21 93.6
MS.gene84607.t1 MTR_0150s0010 29.921 254 140 7 6 241 4 237 4.86e-19 86.7
MS.gene84607.t1 MTR_1g115450 45.238 84 41 1 12 95 7 85 1.71e-16 76.6
MS.gene84607.t1 MTR_4g019240 37.705 122 62 5 3 114 4 121 5.50e-16 76.6
MS.gene84607.t1 MTR_1g115455 28.049 246 141 8 12 242 9 233 7.65e-16 77.4
MS.gene84607.t1 MTR_4g019330 30.387 181 92 4 281 457 32 182 1.12e-15 75.9
MS.gene84607.t1 MTR_0150s0030 42.353 85 43 2 12 95 8 87 8.05e-14 70.9
MS.gene84607.t1 MTR_8g044880 41.758 91 47 2 12 101 8 93 5.07e-13 69.7
MS.gene84607.t1 MTR_8g445910 43.529 85 42 2 12 95 8 87 7.57e-13 68.9
MS.gene84607.t1 MTR_8g445920 40.000 85 46 1 6 90 4 83 4.21e-12 63.2
MS.gene84607.t1 MTR_8g044890 40.000 85 46 1 6 90 4 83 4.21e-12 63.2
MS.gene84607.t1 MTR_7g063760 45.455 66 35 1 393 457 2 67 7.35e-12 61.2
MS.gene84607.t1 MTR_1g115470 39.080 87 48 1 12 98 6 87 1.95e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84607.t1 AT3G09140 32.549 510 282 14 1 461 1 497 8.60e-64 215
MS.gene84607.t1 AT3G09140 31.827 531 286 15 1 461 1 525 1.94e-62 212
MS.gene84607.t1 AT5G01120 28.265 513 307 13 13 479 10 507 1.18e-57 199
MS.gene84607.t1 AT5G43240 29.865 519 295 15 13 479 10 511 9.78e-57 196
MS.gene84607.t1 AT5G43240 29.865 519 295 15 13 479 10 511 9.78e-57 196
MS.gene84607.t1 AT5G43240 29.865 519 295 15 13 479 10 511 9.78e-57 196
MS.gene84607.t1 AT5G01140 30.321 498 283 13 12 479 9 472 4.49e-55 191
MS.gene84607.t1 AT5G01130 30.803 461 279 9 12 457 9 444 4.52e-54 188
MS.gene84607.t1 AT5G01150 29.675 492 285 12 12 460 9 482 5.49e-52 183
MS.gene84607.t1 AT3G09110 33.230 322 206 3 12 332 9 322 5.99e-52 179
MS.gene84607.t1 AT3G09120 31.889 323 198 7 9 321 3 313 1.05e-43 156
MS.gene84607.t1 AT5G37320 26.680 491 299 16 13 460 10 482 2.77e-39 149
MS.gene84607.t1 AT5G43240 28.771 358 199 11 163 479 25 367 1.98e-23 102

Find 88 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTAAATCCCCTATTTC+TGG 0.192592 7.3:+38923405 MS.gene84607:CDS
GCTTCTTAACATTGCCTTTA+GGG 0.201640 7.3:+38922325 MS.gene84607:CDS
TTTCTACCTTTGGCTTCTTC+AGG 0.202952 7.3:-38924474 None:intergenic
TGGAGCACCATTAACGTTTA+TGG 0.217850 7.3:+38923437 MS.gene84607:CDS
CCAGCATATCCACCAGAAAT+AGG 0.239307 7.3:-38923417 None:intergenic
TGCCATTGACTCCATGCTTC+TGG 0.253037 7.3:-38922773 None:intergenic
CCACCAGAAATAGGGGATTT+AGG 0.261981 7.3:-38923408 None:intergenic
CCAACCTCCAATCCGTTTCT+TGG 0.279458 7.3:-38923024 None:intergenic
CAAAGTTAGCATTAGAGTTT+TGG 0.286575 7.3:+38922236 MS.gene84607:CDS
CGACTTCTTTACTCAAAATC+TGG 0.292213 7.3:-38922665 None:intergenic
CCTTAATGACGTGGAGAAAA+TGG 0.295092 7.3:+38923533 MS.gene84607:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.310196 7.3:+38922324 MS.gene84607:CDS
CGGCATGCAAAATTGAAAAT+AGG 0.311961 7.3:+38922577 MS.gene84607:CDS
CTAACTTTGTCACCTTGTTT+TGG 0.321905 7.3:-38922222 None:intergenic
CAATGTTTAATTTCATATTC+CGG 0.328830 7.3:-38922512 None:intergenic
AATGTTGAAGCAGTAAAATT+TGG 0.349258 7.3:+38922378 MS.gene84607:CDS
CAGCATATCCACCAGAAATA+GGG 0.355977 7.3:-38923416 None:intergenic
GATACCTACAGAAAATTATA+AGG 0.356507 7.3:+38923356 MS.gene84607:CDS
CTGTAGGTATCGGTAATATC+TGG 0.356911 7.3:-38923344 None:intergenic
TTCTACCTTTGGCTTCTTCA+GGG 0.358571 7.3:-38924473 None:intergenic
AAACTTGTCATAACCGCATT+TGG 0.359305 7.3:-38922741 None:intergenic
TCAAAATCTGGAACGTTTCT+CGG 0.365833 7.3:-38922653 None:intergenic
TGATCTTCTCAAATTGTCAT+TGG 0.376840 7.3:+38922939 MS.gene84607:CDS
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.3:+38923715 MS.gene84607:CDS
ATCTTGATCAACAGTATCTA+TGG 0.394065 7.3:+38922433 MS.gene84607:CDS
CCTATTTCTGGTGGATATGC+TGG 0.397124 7.3:+38923417 MS.gene84607:CDS
CAAGAAACGGATTGGAGGTT+GGG 0.405114 7.3:+38923025 MS.gene84607:CDS
TCTGTCACCATAAACGTTAA+TGG 0.410819 7.3:-38923444 None:intergenic
GAGTTCAGATTGAGCGGAAA+TGG 0.418322 7.3:-38923316 None:intergenic
CAACCTCCAATCCGTTTCTT+GGG 0.430506 7.3:-38923023 None:intergenic
AAGATATGAAATACCGTCAA+TGG 0.431308 7.3:-38923493 None:intergenic
AACGGATTGGAGGTTGGGAT+TGG 0.432333 7.3:+38923030 MS.gene84607:CDS
TACTATACTAACCAATGAAC+TGG 0.434085 7.3:-38923726 None:intergenic
AAAGGAAGAATCTAATGAAA+TGG 0.437473 7.3:+38923059 MS.gene84607:CDS
CTCCAGAAGCATGGAGTCAA+TGG 0.448511 7.3:+38922771 MS.gene84607:CDS
TTGGAGGTTGGGATTGGTAG+AGG 0.452268 7.3:+38923036 MS.gene84607:CDS
AATATGCAACACTGCTCCTA+AGG 0.452936 7.3:-38923178 None:intergenic
TTCATATCTTGAAAGAATGA+AGG 0.455227 7.3:+38923506 MS.gene84607:CDS
TCTGTTTGCTGAGGCAGATA+AGG 0.456755 7.3:+38922281 MS.gene84607:CDS
TCAAAATCTGCCTTGACAAA+CGG 0.470384 7.3:+38923697 MS.gene84607:CDS
TTTAGTCCCAAGAAACGGAT+TGG 0.478591 7.3:+38923017 MS.gene84607:CDS
GAGAAAATGGTGGTTGAGAT+TGG 0.482733 7.3:+38923546 MS.gene84607:CDS
TACTCAATCCTATAAACTCA+TGG 0.488738 7.3:+38922478 MS.gene84607:CDS
GAAAATTTAGTCCCAAGAAA+CGG 0.492817 7.3:+38923012 MS.gene84607:CDS
ACACACTCACACACAAACTA+AGG 0.501714 7.3:-38922848 None:intergenic
CCAAGAAACGGATTGGAGGT+TGG 0.507870 7.3:+38923024 MS.gene84607:CDS
CTACCTTTGGCTTCTTCAGG+GGG 0.513478 7.3:-38924471 None:intergenic
CTGGTTGAGGCCGTTTGTCA+AGG 0.537345 7.3:-38923707 None:intergenic
TCTCACAAAGGTAGTAGGAC+TGG 0.540252 7.3:-38922551 None:intergenic
ACAAAGGTAGTAGGACTGGA+AGG 0.548379 7.3:-38922547 None:intergenic
TCTACCTTTGGCTTCTTCAG+GGG 0.550005 7.3:-38924472 None:intergenic
ACTCAATCCTATAAACTCAT+GGG 0.552160 7.3:+38922479 MS.gene84607:CDS
ATATGCAACACTGCTCCTAA+GGG 0.554427 7.3:-38923177 None:intergenic
AGCTTACAAAAGAGAACCGT+TGG 0.559569 7.3:-38923203 None:intergenic
AGCATATCCACCAGAAATAG+GGG 0.561344 7.3:-38923415 None:intergenic
AGTCCCAAGAAACGGATTGG+AGG 0.561405 7.3:+38923020 MS.gene84607:CDS
TTAAATCTCCTCCAGAAGCA+TGG 0.561651 7.3:+38922762 MS.gene84607:CDS
ACTAACCAATGAACTGGTTG+AGG 0.567961 7.3:-38923720 None:intergenic
CGTGTTCTCACAAAGGTAGT+AGG 0.571723 7.3:-38922556 None:intergenic
CCTAAATCCCCTATTTCTGG+TGG 0.575624 7.3:+38923408 MS.gene84607:CDS
GGTGGTTGAGATTGGCCAGA+TGG 0.576868 7.3:+38923554 MS.gene84607:CDS
GGTTGGGATTGGTAGAGGAA+AGG 0.578117 7.3:+38923041 MS.gene84607:CDS
AGTCTTGCAATAGTCCCTAA+AGG 0.578435 7.3:-38922339 None:intergenic
ACTCCAATGTCATCCATTGA+CGG 0.602769 7.3:+38923480 MS.gene84607:CDS
CAGTGTTGCATATTCTCCAA+CGG 0.603523 7.3:+38923187 MS.gene84607:CDS
GAAAATCCCTCACCAAAACA+AGG 0.603627 7.3:+38922210 MS.gene84607:CDS
ATACCGTCAATGGATGACAT+TGG 0.606080 7.3:-38923483 None:intergenic
CTACTACCTTTGTGAGAACA+CGG 0.608189 7.3:+38922557 MS.gene84607:CDS
CATTGACTCCATGCTTCTGG+AGG 0.609983 7.3:-38922770 None:intergenic
TTTCCGCTCAATCTGAACTC+AGG 0.610861 7.3:+38923319 MS.gene84607:CDS
GTTTATGGTGACAGATGACT+TGG 0.612440 7.3:+38923452 MS.gene84607:CDS
CTCAATCCTATAAACTCATG+GGG 0.615712 7.3:+38922480 MS.gene84607:CDS
CAAAGGTAGTAGGACTGGAA+GGG 0.616285 7.3:-38922546 None:intergenic
TCAGATTGAGCGGAAATGGT+AGG 0.616944 7.3:-38923312 None:intergenic
TTCACTCTATCAAAGTGTGT+CGG 0.618376 7.3:+38922410 MS.gene84607:CDS
TGCATGCCGTGTTCTCACAA+AGG 0.622193 7.3:-38922563 None:intergenic
GTTCCTGAGTTCAGATTGAG+CGG 0.623935 7.3:-38923322 None:intergenic
AAACACAGTTCTGTTTGCTG+AGG 0.631062 7.3:+38922272 MS.gene84607:CDS
AGGGACTATTGCAAGACTCG+TGG 0.639762 7.3:+38922344 MS.gene84607:CDS
TTAAATATAAAGTCGGACAG+AGG 0.641473 7.3:-38922973 None:intergenic
CAATCCTATAAACTCATGGG+GGG 0.660598 7.3:+38922482 MS.gene84607:CDS
TCAATCCTATAAACTCATGG+GGG 0.663846 7.3:+38922481 MS.gene84607:CDS
GAAGGTTCCCCTTAATGACG+TGG 0.668252 7.3:+38923524 MS.gene84607:CDS
TCTATGGTCAGACACATGCA+AGG 0.670514 7.3:+38922449 MS.gene84607:CDS
TATGCAACACTGCTCCTAAG+GGG 0.682165 7.3:-38923176 None:intergenic
GGTTGAGATTGGCCAGATGG+AGG 0.701991 7.3:+38923557 MS.gene84607:CDS
TCTTTCTGTGATGCCAAATG+CGG 0.708786 7.3:+38922728 MS.gene84607:CDS
TAATGACGTGGAGAAAATGG+TGG 0.744537 7.3:+38923536 MS.gene84607:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATATAACAATTAAGA+AGG + chr7.3:38924088-38924107 MS.gene84607:intron 10.0%
!!! AGTAATTTAAAATGAACAAA+AGG + chr7.3:38924293-38924312 MS.gene84607:intron 15.0%
!!! GAGTATTATAATTTTAATGT+AGG - chr7.3:38923773-38923792 None:intergenic 15.0%
!!! TTGCTTTTTAAATATAAAGT+CGG - chr7.3:38922983-38923002 None:intergenic 15.0%
!! AAGAATCAAAAATGTATTTG+TGG + chr7.3:38922618-38922637 MS.gene84607:CDS 20.0%
!! TAAGGATAATATACAAACAA+GGG - chr7.3:38923959-38923978 None:intergenic 20.0%
!! TGTACATGAACATATAATAA+AGG - chr7.3:38924405-38924424 None:intergenic 20.0%
!!! AAATTCAACTTTTATCGTAT+CGG + chr7.3:38922701-38922720 MS.gene84607:CDS 20.0%
!!! CAATGTTTAATTTCATATTC+CGG - chr7.3:38922515-38922534 None:intergenic 20.0%
!!! GTACTACTTGTTATATTAAA+TGG - chr7.3:38924183-38924202 None:intergenic 20.0%
!!! TTATAATTTTCTGTAGGTAT+CGG - chr7.3:38923357-38923376 None:intergenic 20.0%
!!! TTTTCCTTATAATTTTCTGT+AGG - chr7.3:38923363-38923382 None:intergenic 20.0%
! AAAACGTGTTAGTGAATTAA+TGG - chr7.3:38924071-38924090 None:intergenic 25.0%
! AAAGGAAGAATCTAATGAAA+TGG + chr7.3:38923059-38923078 MS.gene84607:CDS 25.0%
! AATGTTGAAGCAGTAAAATT+TGG + chr7.3:38922378-38922397 MS.gene84607:CDS 25.0%
! AGTTAATATCAGCAAAAAAG+AGG + chr7.3:38922818-38922837 MS.gene84607:CDS 25.0%
! ATATACATACAGTTACCTTA+TGG - chr7.3:38924213-38924232 None:intergenic 25.0%
! ATTTGTAGAGTGATTGAAAA+TGG + chr7.3:38923896-38923915 MS.gene84607:intron 25.0%
! CTAAGGATAATATACAAACA+AGG - chr7.3:38923960-38923979 None:intergenic 25.0%
! CTACAAATTCCTTCAAAATT+TGG - chr7.3:38923884-38923903 None:intergenic 25.0%
! CTTGTTTGTATATTATCCTT+AGG + chr7.3:38923958-38923977 MS.gene84607:intron 25.0%
! GATACCTACAGAAAATTATA+AGG + chr7.3:38923356-38923375 MS.gene84607:CDS 25.0%
! TAAGGTAACTGTATGTATAT+TGG + chr7.3:38924213-38924232 MS.gene84607:intron 25.0%
! TTCATATCTTGAAAGAATGA+AGG + chr7.3:38923506-38923525 MS.gene84607:CDS 25.0%
!! AGTAGTACTAATTTTCCATA+AGG + chr7.3:38924195-38924214 MS.gene84607:intron 25.0%
!!! TATAATTTTAATGTAGGACG+AGG - chr7.3:38923767-38923786 None:intergenic 25.0%
AAAATGAACAAAAGGTGAGA+TGG + chr7.3:38924301-38924320 MS.gene84607:intron 30.0%
AAATGAACAAAAGGTGAGAT+GGG + chr7.3:38924302-38924321 MS.gene84607:intron 30.0%
AAGAGATTGACAGTCATAAA+GGG + chr7.3:38924325-38924344 MS.gene84607:intron 30.0%
AAGATATGAAATACCGTCAA+TGG - chr7.3:38923496-38923515 None:intergenic 30.0%
AATTTGGTCTCTCTAAATGT+TGG - chr7.3:38923868-38923887 None:intergenic 30.0%
ACAAGGGCTAAATATGTTAT+TGG - chr7.3:38923943-38923962 None:intergenic 30.0%
ACTCAATCCTATAAACTCAT+GGG + chr7.3:38922479-38922498 MS.gene84607:CDS 30.0%
ATATTATCCTTAGGATTGAC+TGG + chr7.3:38923967-38923986 MS.gene84607:intron 30.0%
ATCTTGATCAACAGTATCTA+TGG + chr7.3:38922433-38922452 MS.gene84607:CDS 30.0%
CAACCACATGAAATCAAATA+TGG - chr7.3:38923644-38923663 None:intergenic 30.0%
GAAAATTTAGTCCCAAGAAA+CGG + chr7.3:38923012-38923031 MS.gene84607:CDS 30.0%
TACTATACTAACCAATGAAC+TGG - chr7.3:38923729-38923748 None:intergenic 30.0%
TACTCAATCCTATAAACTCA+TGG + chr7.3:38922478-38922497 MS.gene84607:CDS 30.0%
TATATGTTCATGTACATTGC+AGG + chr7.3:38924409-38924428 MS.gene84607:intron 30.0%
TCATATGATCTAAGGGTAAT+GGG + chr7.3:38924240-38924259 MS.gene84607:intron 30.0%
TGATCTTCTCAAATTGTCAT+TGG + chr7.3:38922939-38922958 MS.gene84607:CDS 30.0%
TGGATGTTCATATGATCTAA+GGG + chr7.3:38924233-38924252 MS.gene84607:intron 30.0%
TTAAATATAAAGTCGGACAG+AGG - chr7.3:38922976-38922995 None:intergenic 30.0%
TTCATATGATCTAAGGGTAA+TGG + chr7.3:38924239-38924258 MS.gene84607:intron 30.0%
TTGGATGTTCATATGATCTA+AGG + chr7.3:38924232-38924251 MS.gene84607:intron 30.0%
! CAAAGTTAGCATTAGAGTTT+TGG + chr7.3:38922236-38922255 MS.gene84607:CDS 30.0%
! TCACCATATTTGATTTCATG+TGG + chr7.3:38923638-38923657 MS.gene84607:intron 30.0%
! TGAGTTCAGACAAGTATTTT+AGG + chr7.3:38923259-38923278 MS.gene84607:CDS 30.0%
! TTAGAGAGACCAAATTTTGA+AGG + chr7.3:38923872-38923891 MS.gene84607:intron 30.0%
!! CAGATTTTGAGTAAAGAAGT+CGG + chr7.3:38922666-38922685 MS.gene84607:CDS 30.0%
!!! TAAAGAAGTCGGTTTTGTTA+AGG + chr7.3:38922677-38922696 MS.gene84607:CDS 30.0%
AAACTTGTCATAACCGCATT+TGG - chr7.3:38922744-38922763 None:intergenic 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.3:38922324-38922343 MS.gene84607:CDS 35.0%
CACACTAATTCTTCAATCTG+TGG + chr7.3:38922902-38922921 MS.gene84607:intron 35.0%
CATATGATCTAAGGGTAATG+GGG + chr7.3:38924241-38924260 MS.gene84607:intron 35.0%
CGACTTCTTTACTCAAAATC+TGG - chr7.3:38922668-38922687 None:intergenic 35.0%
CGGCATGCAAAATTGAAAAT+AGG + chr7.3:38922577-38922596 MS.gene84607:CDS 35.0%
CTCAATCCTATAAACTCATG+GGG + chr7.3:38922480-38922499 MS.gene84607:CDS 35.0%
CTTCAATCTGTGGTTTGAAT+AGG + chr7.3:38922912-38922931 MS.gene84607:intron 35.0%
GAAGAGATTGACAGTCATAA+AGG + chr7.3:38924324-38924343 MS.gene84607:intron 35.0%
GAGTGATTGAAAATGGAAGT+TGG + chr7.3:38923903-38923922 MS.gene84607:intron 35.0%
GCATGAGTTGTGAAAATAGT+TGG - chr7.3:38924122-38924141 None:intergenic 35.0%
GCTTCTTAACATTGCCTTTA+GGG + chr7.3:38922325-38922344 MS.gene84607:CDS 35.0%
TCAAAATCTGCCTTGACAAA+CGG + chr7.3:38923697-38923716 MS.gene84607:CDS 35.0%
TCAATCCTATAAACTCATGG+GGG + chr7.3:38922481-38922500 MS.gene84607:CDS 35.0%
TCTGTCACCATAAACGTTAA+TGG - chr7.3:38923447-38923466 None:intergenic 35.0%
TTCACTCTATCAAAGTGTGT+CGG + chr7.3:38922410-38922429 MS.gene84607:CDS 35.0%
! ATTTGATTTCATGTGGTTGC+AGG + chr7.3:38923645-38923664 MS.gene84607:intron 35.0%
! ATTTTCTCCACGTCATTAAG+GGG - chr7.3:38923534-38923553 None:intergenic 35.0%
! CATTTTCTCCACGTCATTAA+GGG - chr7.3:38923535-38923554 None:intergenic 35.0%
! TCAAAATCTGGAACGTTTCT+CGG - chr7.3:38922656-38922675 None:intergenic 35.0%
! TCATAAAGGGTGTGTAATCT+TGG + chr7.3:38924338-38924357 MS.gene84607:intron 35.0%
! TTTGATTTCATGTGGTTGCA+GGG + chr7.3:38923646-38923665 MS.gene84607:intron 35.0%
!! AGTTAGCATTAGAGTTTTGG+TGG + chr7.3:38922239-38922258 MS.gene84607:CDS 35.0%
!! CTAACTTTGTCACCTTGTTT+TGG - chr7.3:38922225-38922244 None:intergenic 35.0%
!! GATTTTGTTTGTTGAAGCAG+AGG + chr7.3:38923116-38923135 MS.gene84607:CDS 35.0%
AATATGCAACACTGCTCCTA+AGG - chr7.3:38923181-38923200 None:intergenic 40.0%
ACACACTCACACACAAACTA+AGG - chr7.3:38922851-38922870 None:intergenic 40.0%
ACTAACCAATGAACTGGTTG+AGG - chr7.3:38923723-38923742 None:intergenic 40.0%
ACTCCAATGTCATCCATTGA+CGG + chr7.3:38923480-38923499 MS.gene84607:CDS 40.0%
AGCATATCCACCAGAAATAG+GGG - chr7.3:38923418-38923437 None:intergenic 40.0%
AGCTTACAAAAGAGAACCGT+TGG - chr7.3:38923206-38923225 None:intergenic 40.0%
AGTCTTGCAATAGTCCCTAA+AGG - chr7.3:38922342-38922361 None:intergenic 40.0%
ATACCGTCAATGGATGACAT+TGG - chr7.3:38923486-38923505 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG - chr7.3:38923180-38923199 None:intergenic 40.0%
ATGTAGGACGAGGTTATGTT+TGG - chr7.3:38923757-38923776 None:intergenic 40.0%
CAATCCTATAAACTCATGGG+GGG + chr7.3:38922482-38922501 MS.gene84607:CDS 40.0%
CAGCATATCCACCAGAAATA+GGG - chr7.3:38923419-38923438 None:intergenic 40.0%
CAGTGTTGCATATTCTCCAA+CGG + chr7.3:38923187-38923206 MS.gene84607:CDS 40.0%
CCTTAATGACGTGGAGAAAA+TGG + chr7.3:38923533-38923552 MS.gene84607:CDS 40.0%
CTACTACCTTTGTGAGAACA+CGG + chr7.3:38922557-38922576 MS.gene84607:CDS 40.0%
GAAAATCCCTCACCAAAACA+AGG + chr7.3:38922210-38922229 MS.gene84607:CDS 40.0%
GAGAAAATGGTGGTTGAGAT+TGG + chr7.3:38923546-38923565 MS.gene84607:CDS 40.0%
GATCCTAAATCCCCTATTTC+TGG + chr7.3:38923405-38923424 MS.gene84607:CDS 40.0%
GTTTATGGTGACAGATGACT+TGG + chr7.3:38923452-38923471 MS.gene84607:CDS 40.0%
TAATGACGTGGAGAAAATGG+TGG + chr7.3:38923536-38923555 MS.gene84607:CDS 40.0%
TCTTTCTGTGATGCCAAATG+CGG + chr7.3:38922728-38922747 MS.gene84607:CDS 40.0%
TGCATAACCAGTCAATCCTA+AGG - chr7.3:38923977-38923996 None:intergenic 40.0%
TTAAATCTCCTCCAGAAGCA+TGG + chr7.3:38922762-38922781 MS.gene84607:CDS 40.0%
TTTAGTCCCAAGAAACGGAT+TGG + chr7.3:38923017-38923036 MS.gene84607:CDS 40.0%
! AAACACAGTTCTGTTTGCTG+AGG + chr7.3:38922272-38922291 MS.gene84607:CDS 40.0%
! AGTTTTCTCACTTTCCCCTT+AGG + chr7.3:38923162-38923181 MS.gene84607:CDS 40.0%
! CCATTTTCTCCACGTCATTA+AGG - chr7.3:38923536-38923555 None:intergenic 40.0%
! GTTTGTCAAGGCAGATTTTG+AGG - chr7.3:38923698-38923717 None:intergenic 40.0%
! TGGAGCACCATTAACGTTTA+TGG + chr7.3:38923437-38923456 MS.gene84607:CDS 40.0%
! TTCTACCTTTGGCTTCTTCA+GGG - chr7.3:38924476-38924495 None:intergenic 40.0%
! TTTCTACCTTTGGCTTCTTC+AGG - chr7.3:38924477-38924496 None:intergenic 40.0%
!! CTGTAGGTATCGGTAATATC+TGG - chr7.3:38923347-38923366 None:intergenic 40.0%
!!! TTGTCACCTTGTTTTGGTGA+GGG - chr7.3:38922219-38922238 None:intergenic 40.0%
!!! TTTGTCACCTTGTTTTGGTG+AGG - chr7.3:38922220-38922239 None:intergenic 40.0%
ACAAAGGTAGTAGGACTGGA+AGG - chr7.3:38922550-38922569 None:intergenic 45.0%
ATTGGCCAGATGGAGGTAAA+AGG + chr7.3:38923564-38923583 MS.gene84607:intron 45.0%
CAAAGGTAGTAGGACTGGAA+GGG - chr7.3:38922549-38922568 None:intergenic 45.0%
CAACCTCCAATCCGTTTCTT+GGG - chr7.3:38923026-38923045 None:intergenic 45.0%
CCACCAGAAATAGGGGATTT+AGG - chr7.3:38923411-38923430 None:intergenic 45.0%
CCAGCATATCCACCAGAAAT+AGG - chr7.3:38923420-38923439 None:intergenic 45.0%
CGTGTTCTCACAAAGGTAGT+AGG - chr7.3:38922559-38922578 None:intergenic 45.0%
GAGTTCAGATTGAGCGGAAA+TGG - chr7.3:38923319-38923338 None:intergenic 45.0%
GTTCCTGAGTTCAGATTGAG+CGG - chr7.3:38923325-38923344 None:intergenic 45.0%
TAAGCCCCCCATGAGTTTAT+AGG - chr7.3:38922489-38922508 None:intergenic 45.0%
TATGCAACACTGCTCCTAAG+GGG - chr7.3:38923179-38923198 None:intergenic 45.0%
TCAGATTGAGCGGAAATGGT+AGG - chr7.3:38923315-38923334 None:intergenic 45.0%
TCTATGGTCAGACACATGCA+AGG + chr7.3:38922449-38922468 MS.gene84607:CDS 45.0%
TCTCACAAAGGTAGTAGGAC+TGG - chr7.3:38922554-38922573 None:intergenic 45.0%
TTGGCCAGATGGAGGTAAAA+GGG + chr7.3:38923565-38923584 MS.gene84607:intron 45.0%
TTTCCGCTCAATCTGAACTC+AGG + chr7.3:38923319-38923338 MS.gene84607:CDS 45.0%
! TCTACCTTTGGCTTCTTCAG+GGG - chr7.3:38924475-38924494 None:intergenic 45.0%
! TCTGTTTGCTGAGGCAGATA+AGG + chr7.3:38922281-38922300 MS.gene84607:CDS 45.0%
!! CAAGAAACGGATTGGAGGTT+GGG + chr7.3:38923025-38923044 MS.gene84607:CDS 45.0%
!! CCTAAATCCCCTATTTCTGG+TGG + chr7.3:38923408-38923427 MS.gene84607:CDS 45.0%
!! CCTATTTCTGGTGGATATGC+TGG + chr7.3:38923417-38923436 MS.gene84607:CDS 45.0%
!! TCTAAGGGTAATGGGGAGTA+AGG + chr7.3:38924248-38924267 MS.gene84607:intron 45.0%
AACGGCCTCAACCAGTTCAT+TGG + chr7.3:38923715-38923734 MS.gene84607:CDS 50.0%
AGGGACTATTGCAAGACTCG+TGG + chr7.3:38922344-38922363 MS.gene84607:CDS 50.0%
CCAACCTCCAATCCGTTTCT+TGG - chr7.3:38923027-38923046 None:intergenic 50.0%
GAAGGTTCCCCTTAATGACG+TGG + chr7.3:38923524-38923543 MS.gene84607:CDS 50.0%
GGGTGTGTAATCTTGGTCAC+TGG + chr7.3:38924345-38924364 MS.gene84607:intron 50.0%
TGCATGCCGTGTTCTCACAA+AGG - chr7.3:38922566-38922585 None:intergenic 50.0%
! CACTCCCTTTTACCTCCATC+TGG - chr7.3:38923572-38923591 None:intergenic 50.0%
! CTACCTTTGGCTTCTTCAGG+GGG - chr7.3:38924474-38924493 None:intergenic 50.0%
! CTCCAGAAGCATGGAGTCAA+TGG + chr7.3:38922771-38922790 MS.gene84607:CDS 50.0%
! GGTTGGGATTGGTAGAGGAA+AGG + chr7.3:38923041-38923060 MS.gene84607:CDS 50.0%
! TTGGAGGTTGGGATTGGTAG+AGG + chr7.3:38923036-38923055 MS.gene84607:CDS 50.0%
!! AACGGATTGGAGGTTGGGAT+TGG + chr7.3:38923030-38923049 MS.gene84607:CDS 50.0%
!! AGTCCCAAGAAACGGATTGG+AGG + chr7.3:38923020-38923039 MS.gene84607:CDS 50.0%
!! CATTGACTCCATGCTTCTGG+AGG - chr7.3:38922773-38922792 None:intergenic 50.0%
!! CCAAGAAACGGATTGGAGGT+TGG + chr7.3:38923024-38923043 MS.gene84607:CDS 50.0%
!! TGCCATTGACTCCATGCTTC+TGG - chr7.3:38922776-38922795 None:intergenic 50.0%
ACTCATGGGGGGCTTATTGC+CGG + chr7.3:38922493-38922512 MS.gene84607:CDS 55.0%
CTGGTTGAGGCCGTTTGTCA+AGG - chr7.3:38923710-38923729 None:intergenic 55.0%
! GGTGGTTGAGATTGGCCAGA+TGG + chr7.3:38923554-38923573 MS.gene84607:CDS 55.0%
! GGTTGAGATTGGCCAGATGG+AGG + chr7.3:38923557-38923576 MS.gene84607:CDS 55.0%
TCGCCCCCTGAAGAAGCCAA+AGG + chr7.3:38924468-38924487 MS.gene84607:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38922204 38924501 38922204 ID=MS.gene84607
chr7.3 mRNA 38922204 38924501 38922204 ID=MS.gene84607.t1;Parent=MS.gene84607
chr7.3 exon 38922204 38922860 38922204 ID=MS.gene84607.t1.exon1;Parent=MS.gene84607.t1
chr7.3 CDS 38922204 38922860 38922204 ID=cds.MS.gene84607.t1;Parent=MS.gene84607.t1
chr7.3 exon 38922934 38923578 38922934 ID=MS.gene84607.t1.exon2;Parent=MS.gene84607.t1
chr7.3 CDS 38922934 38923578 38922934 ID=cds.MS.gene84607.t1;Parent=MS.gene84607.t1
chr7.3 exon 38923667 38923736 38923667 ID=MS.gene84607.t1.exon3;Parent=MS.gene84607.t1
chr7.3 CDS 38923667 38923736 38923667 ID=cds.MS.gene84607.t1;Parent=MS.gene84607.t1
chr7.3 exon 38924431 38924501 38924431 ID=MS.gene84607.t1.exon4;Parent=MS.gene84607.t1
chr7.3 CDS 38924431 38924501 38924431 ID=cds.MS.gene84607.t1;Parent=MS.gene84607.t1
Gene Sequence

>MS.gene84607

ATGGCTGAAAATCCCTCACCAAAACAAGGTGACAAAGTTAGCATTAGAGTTTTGGTGGAAAAGAAGAAAAACACAGTTCTGTTTGCTGAGGCAGATAAGGATTTTGTTGATGTTCTTTTCAGCTTCTTAACATTGCCTTTAGGGACTATTGCAAGACTCGTGGCTAAAGAGTCAAATGTTGAAGCAGTAAAATTTGGCAGCATTAGTTCACTCTATCAAAGTGTGTCGGATCTTGATCAACAGTATCTATGGTCAGACACATGCAAGGAAATGCTACTCAATCCTATAAACTCATGGGGGGCTTATTGCCGGAATATGAAATTAAACATTGATGATACTGAGCCCTTCCAGTCCTACTACCTTTGTGAGAACACGGCATGCAAAATTGAAAATAGGTACTGTGTGAGTCACTTTAAGAATCAAAAATGTATTTGTGGAAAAATGTTGAACCGAGAAACGTTCCAGATTTTGAGTAAAGAAGTCGGTTTTGTTAAGGAAAATTCAACTTTTATCGTATCGGATGATCTTTCTGTGATGCCAAATGCGGTTATGACAAGTTTAAATCTCCTCCAGAAGCATGGAGTCAATGGCATCAATGCTATTGATAAACAAACAGTTAATATCAGCAAAAAAGAGGCAAGTATCCTTAGTTTGTGTGTGAGTGTGTGTCTTTACTTTTGATGATTATATTGTTTTAACACACTAATTCTTCAATCTGTGGTTTGAATAGGTACTTGATCTTCTCAAATTGTCATTGGTTTCAAAAACTCCTCTGTCCGACTTTATATTTAAAAAGCAACAATTTGTTGAAAATTTAGTCCCAAGAAACGGATTGGAGGTTGGGATTGGTAGAGGAAAGGAAGAATCTAATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGCAGAGGAAGATTTTGCTGACTTTGTTTTTAGTTTTCTCACTTTCCCCTTAGGAGCAGTGTTGCATATTCTCCAACGGTTCTCTTTTGTAAGCTGCATTGATAGTTTATATAAGAGTGTGACTGAATTGAGTTCAGACAAGTATTTTAGGTCACAGTTTTTCAAAGACATACTAACTAGTCCTACCATTTCCGCTCAATCTGAACTCAGGAACCAGATATTACCGATACCTACAGAAAATTATAAGGAAAAAAATATGTCATTTGAATTTGTTGATCCTAAATCCCCTATTTCTGGTGGATATGCTGGAGCACCATTAACGTTTATGGTGACAGATGACTTGGTTGTGACTCCAATGTCATCCATTGACGGTATTTCATATCTTGAAAGAATGAAGGTTCCCCTTAATGACGTGGAGAAAATGGTGGTTGAGATTGGCCAGATGGAGGTAAAAGGGAGTGTGTTAGTCTTTCATTCTAATATTTCTTGTATTAGATTCATAACAACTCACCATATTTGATTTCATGTGGTTGCAGGGTCTCAGCATACTTAGAGCTTCATTGACCTCAAAATCTGCCTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATAGTATTAGTCCAAACATAACCTCGTCCTACATTAAAATTATAATACTCACAATATTAAAGTTCATCGAGAAAATTATTCAAAAATAGTCATTTCGAACATGTTAAGTGAACTTTTGTTAACCAACATTTAGAGAGACCAAATTTTGAAGGAATTTGTAGAGTGATTGAAAATGGAAGTTGGTATATTTAGAGAGACCAATAACATATTTAGCCCTTGTTTGTATATTATCCTTAGGATTGACTGGTTATGCATACATACTATTTTCATATCTGAAATACTTGTGTATTGTAAACTAACATTTGTGTATTGTAAACTAACATAGCCATTAATTCACTAACACGTTTTTAATATAACAATTAAGAAGGAGAAATTACCAACTATTTTCACAACTCATGCTTACAAAAATATTAGATGACTACTAATATTAGATGACTCCATTTAATATAACAAGTAGTACTAATTTTCCATAAGGTAACTGTATGTATATTGGATGTTCATATGATCTAAGGGTAATGGGGAGTAAGGACAGTTAATGTCAAGAAAATTAAGTAATTTAAAATGAACAAAAGGTGAGATGGGAAGAGATTGACAGTCATAAAGGGTGTGTAATCTTGGTCACTGGTTTGTTAAATAATTTTGAATATGTACTAACTACTCCTTTATTATATGTTCATGTACATTGCAGGAAGTAGATCTGTTCAGAATAATTTGTCATCTAATGCTCGCCCCCTGAAGAAGCCAAAGGTAGAAAAATGA
Protein sequence

>MS.gene84607.t1

MAENPSPKQGDKVSIRVLVEKKKNTVLFAEADKDFVDVLFSFLTLPLGTIARLVAKESNVEAVKFGSISSLYQSVSDLDQQYLWSDTCKEMLLNPINSWGAYCRNMKLNIDDTEPFQSYYLCENTACKIENRYCVSHFKNQKCICGKMLNRETFQILSKEVGFVKENSTFIVSDDLSVMPNAVMTSLNLLQKHGVNGINAIDKQTVNISKKEASILSLCVLDLLKLSLVSKTPLSDFIFKKQQFVENLVPRNGLEVGIGRGKEESNEMVVKVLRRKSNEQILFVEAEEDFADFVFSFLTFPLGAVLHILQRFSFVSCIDSLYKSVTELSSDKYFRSQFFKDILTSPTISAQSELRNQILPIPTENYKEKNMSFEFVDPKSPISGGYAGAPLTFMVTDDLVVTPMSSIDGISYLERMKVPLNDVEKMVVEIGQMEGLSILRASLTSKSALTNGLNQFIGSRSVQNNLSSNARPLKKPKVEK