AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46085

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46085.t1 MTR_7g063900 92.418 488 37 0 1 488 1 488 0.0 902
MS.gene46085.t1 MTR_7g063890 73.770 488 125 3 2 488 19 504 0.0 677
MS.gene46085.t1 MTR_7g062280 54.672 503 201 8 1 488 1 491 1.27e-179 513
MS.gene46085.t1 MTR_7g063840 56.212 491 194 7 1 488 1 473 1.37e-178 509
MS.gene46085.t1 MTR_7g062300 56.851 489 186 11 1 481 1 472 2.33e-177 506
MS.gene46085.t1 MTR_7g063880 55.193 491 187 10 2 486 3 466 1.33e-173 496
MS.gene46085.t1 MTR_7g063820 56.137 497 196 10 1 488 1 484 1.87e-168 484
MS.gene46085.t1 MTR_7g063660 54.508 488 204 10 5 488 4 477 9.09e-168 482
MS.gene46085.t1 MTR_7g063920 54.098 488 169 7 2 488 3 436 3.17e-166 476
MS.gene46085.t1 MTR_7g063830 53.564 491 168 10 1 483 1 439 6.65e-165 473
MS.gene46085.t1 MTR_3g007740 52.429 494 170 14 3 483 2 443 5.91e-145 422
MS.gene46085.t1 MTR_7g063670 49.184 490 195 11 8 488 13 457 1.91e-132 391
MS.gene46085.t1 MTR_7g066570 43.340 503 246 13 3 486 2 484 3.52e-119 361
MS.gene46085.t1 MTR_7g066430 42.073 492 256 10 10 482 4 485 4.33e-111 338
MS.gene46085.t1 MTR_7g066410 40.613 522 262 9 1 483 1 513 2.94e-109 334
MS.gene46085.t1 MTR_3g065200 43.497 469 193 14 10 469 3 408 1.09e-105 323
MS.gene46085.t1 MTR_7g066260 41.000 500 238 13 1 484 6 464 4.71e-105 322
MS.gene46085.t1 MTR_7g066260 26.230 244 146 8 13 255 272 482 6.07e-14 74.3
MS.gene46085.t1 MTR_7g066340 40.481 499 238 15 1 484 1 455 5.47e-101 311
MS.gene46085.t1 MTR_7g066340 28.033 239 132 9 6 239 260 463 6.12e-17 83.6
MS.gene46085.t1 MTR_7g058710 38.552 511 259 16 2 488 4 483 2.21e-100 310
MS.gene46085.t1 MTR_7g012680 39.721 501 236 11 2 488 3 451 2.87e-99 306
MS.gene46085.t1 MTR_7g066350 39.184 490 241 11 1 478 1 445 2.48e-92 288
MS.gene46085.t1 MTR_7g066580 37.526 485 239 12 16 479 1 442 8.89e-90 281
MS.gene46085.t1 MTR_7g066360 38.956 498 230 14 2 479 3 446 5.06e-89 280
MS.gene46085.t1 MTR_1g041315 37.320 485 231 14 9 466 13 451 5.94e-85 270
MS.gene46085.t1 MTR_1g041315 26.852 216 121 9 3 216 271 451 1.65e-12 69.7
MS.gene46085.t1 MTR_7g066290 37.426 505 223 15 1 483 1 434 5.03e-84 266
MS.gene46085.t1 MTR_7g066400 35.329 501 233 14 1 478 1 433 7.62e-81 258
MS.gene46085.t1 MTR_7g063720 51.362 257 95 6 232 486 2 230 5.70e-78 244
MS.gene46085.t1 MTR_7g063720 30.876 217 125 8 13 226 26 220 1.93e-19 87.8
MS.gene46085.t1 MTR_7g066480 44.582 323 166 4 10 323 16 334 2.32e-76 246
MS.gene46085.t1 MTR_7g066480 48.810 84 43 0 400 483 339 422 2.08e-14 75.5
MS.gene46085.t1 MTR_7g066490 44.099 322 153 7 11 323 17 320 5.09e-75 242
MS.gene46085.t1 MTR_7g066490 41.284 109 55 1 375 483 309 408 1.47e-13 72.8
MS.gene46085.t1 MTR_4g019310 35.167 509 280 18 4 482 2 490 2.80e-73 240
MS.gene46085.t1 MTR_7g066310 34.937 478 211 11 9 484 6 385 5.69e-73 236
MS.gene46085.t1 MTR_7g066310 28.514 249 138 9 6 252 190 400 1.59e-16 82.0
MS.gene46085.t1 MTR_2g029400 35.456 471 217 11 9 471 13 404 1.20e-72 236
MS.gene46085.t1 MTR_7g058700 35.041 488 205 11 22 488 531 927 4.73e-69 237
MS.gene46085.t1 MTR_7g100420 44.479 326 162 7 153 478 87 393 1.13e-66 220
MS.gene46085.t1 MTR_7g100420 71.154 52 15 0 2 53 31 82 5.76e-16 80.1
MS.gene46085.t1 MTR_7g100420 27.660 235 153 7 10 236 177 402 4.12e-11 65.1
MS.gene46085.t1 MTR_4g017440 32.554 513 293 15 5 482 8 502 1.75e-64 217
MS.gene46085.t1 MTR_7g063850 43.408 311 152 8 179 488 1 288 2.92e-64 210
MS.gene46085.t1 MTR_7g062270 56.316 190 69 4 3 184 2 185 3.55e-64 213
MS.gene46085.t1 MTR_7g062270 28.646 192 98 8 253 429 11 178 1.91e-11 66.2
MS.gene46085.t1 MTR_4g017830 32.370 519 296 19 1 482 1 501 3.15e-63 214
MS.gene46085.t1 MTR_4g017470 31.311 511 280 12 3 483 2 471 6.74e-62 210
MS.gene46085.t1 MTR_4g017410 32.432 518 279 17 3 483 2 485 1.81e-61 209
MS.gene46085.t1 MTR_4g017610 31.890 508 283 18 1 478 1 475 1.54e-57 198
MS.gene46085.t1 MTR_7g063690 43.662 284 90 6 2 279 3 222 4.86e-56 187
MS.gene46085.t1 MTR_4g019340 31.151 504 282 15 1 470 29 501 4.19e-55 192
MS.gene46085.t1 MTR_7g066280 34.129 419 226 16 89 484 1 392 2.61e-50 177
MS.gene46085.t1 MTR_1g014060 44.500 200 106 4 19 215 9 206 1.11e-46 167
MS.gene46085.t1 MTR_1g014060 35.714 224 108 8 271 488 197 390 2.94e-30 122
MS.gene46085.t1 MTR_1g014060 28.241 216 118 8 265 465 13 206 1.74e-14 75.5
MS.gene46085.t1 MTR_4g017550 30.453 486 256 18 40 479 21 470 9.95e-45 163
MS.gene46085.t1 MTR_4g017550 29.707 239 126 9 10 225 247 466 1.32e-13 73.2
MS.gene46085.t1 MTR_7g066680 35.048 311 148 8 209 478 37 334 3.16e-40 148
MS.gene46085.t1 MTR_7g066680 26.432 227 128 9 4 211 80 286 2.24e-12 68.6
MS.gene46085.t1 MTR_8g023240 26.087 483 307 14 7 474 34 481 8.61e-40 151
MS.gene46085.t1 MTR_8g445860 30.380 237 140 7 10 232 13 238 3.50e-27 109
MS.gene46085.t1 MTR_8g445860 29.339 242 138 7 248 475 9 231 1.30e-21 94.0
MS.gene46085.t1 MTR_0150s0010 30.081 246 148 6 1 231 1 237 1.57e-25 105
MS.gene46085.t1 MTR_0150s0010 31.624 234 150 7 246 475 4 231 5.76e-21 92.4
MS.gene46085.t1 MTR_1g115440 30.081 246 146 7 2 231 3 238 1.00e-23 100
MS.gene46085.t1 MTR_7g063760 56.944 72 30 1 418 488 2 73 2.20e-20 85.5
MS.gene46085.t1 MTR_2g067310 35.294 187 78 6 10 192 43 190 3.38e-20 90.1
MS.gene46085.t1 MTR_1g115455 28.400 250 141 8 3 232 2 233 2.12e-19 87.8
MS.gene46085.t1 MTR_1g115455 28.099 242 148 8 245 476 2 227 3.79e-14 72.4
MS.gene46085.t1 MTR_7g063870 70.175 57 17 0 4 60 25 81 6.87e-19 86.7
MS.gene46085.t1 MTR_7g063870 54.839 62 28 0 155 216 96 157 1.64e-13 70.9
MS.gene46085.t1 MTR_1g115450 33.600 125 74 3 7 127 4 123 1.99e-14 70.9
MS.gene46085.t1 MTR_1g115450 34.524 84 55 0 248 331 3 86 1.11e-11 62.8
MS.gene46085.t1 MTR_1g115470 42.157 102 51 3 10 109 6 101 4.31e-13 71.6
MS.gene46085.t1 MTR_7g066390 43.023 86 45 2 399 484 43 124 5.36e-13 67.0
MS.gene46085.t1 MTR_8g445920 42.045 88 46 2 1 88 1 83 7.91e-13 65.1
MS.gene46085.t1 MTR_8g044890 42.045 88 46 2 1 88 1 83 7.91e-13 65.1
MS.gene46085.t1 MTR_4g019240 36.522 115 61 4 6 110 7 119 2.40e-11 63.2
MS.gene46085.t1 MTR_0150s0030 35.789 95 53 3 1 94 1 88 2.87e-11 63.5
MS.gene46085.t1 MTR_8g445910 36.842 95 52 3 1 94 1 88 6.02e-11 63.5
MS.gene46085.t1 MTR_8g044880 36.842 95 52 3 1 94 1 88 6.80e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46085.t1 AT5G01150 31.558 507 293 15 3 483 2 480 7.85e-64 215
MS.gene46085.t1 AT5G01120 34.756 492 281 16 11 478 10 485 7.60e-62 210
MS.gene46085.t1 AT5G01120 27.500 240 146 10 5 230 262 487 4.04e-11 65.5
MS.gene46085.t1 AT3G09140 32.427 515 295 14 1 483 1 494 3.05e-61 208
MS.gene46085.t1 AT5G43240 33.400 497 285 15 11 478 10 489 1.42e-57 199
MS.gene46085.t1 AT5G43240 33.400 497 285 15 11 478 10 489 1.42e-57 199
MS.gene46085.t1 AT5G43240 33.400 497 285 15 11 478 10 489 1.42e-57 199
MS.gene46085.t1 AT3G09140 30.755 543 295 15 1 483 1 522 3.21e-56 196
MS.gene46085.t1 AT3G09110 35.103 339 197 5 10 336 9 336 4.24e-56 190
MS.gene46085.t1 AT5G01130 31.412 503 275 15 3 488 2 451 6.45e-56 193
MS.gene46085.t1 AT5G01140 30.677 502 276 19 3 483 2 452 1.83e-53 187
MS.gene46085.t1 AT3G09120 33.866 313 188 5 9 306 5 313 2.10e-42 153
MS.gene46085.t1 AT3G09120 27.615 239 144 8 252 476 6 229 4.30e-15 76.6
MS.gene46085.t1 AT5G37320 26.523 509 283 15 24 487 23 485 6.59e-36 139
MS.gene46085.t1 AT5G43240 31.065 338 198 13 159 478 25 345 2.29e-21 95.9

Find 84 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTCCTTTAGGTGATT+TGG 0.164558 7.2:+41778673 None:intergenic
TAATCTTCAGAAGAGTTATT+TGG 0.189129 7.2:+41779698 None:intergenic
AAATGGTCTTCGTCACTTAT+TGG 0.214637 7.2:-41778338 MS.gene46085:CDS
TCTCTGACAGATTTGTTTCT+AGG 0.224145 7.2:-41779202 MS.gene46085:CDS
CTTAGTATGCTTCAGAATTA+TGG 0.229053 7.2:-41779425 MS.gene46085:CDS
GGAGGAGTCGTTCGTATATT+AGG 0.243181 7.2:-41779007 MS.gene46085:CDS
TAACCATCATCATTTCCTTT+AGG 0.299565 7.2:+41778665 None:intergenic
TCATTTCCTTTAGGTGATTT+GGG 0.316839 7.2:+41778674 None:intergenic
AAGAGAAAACACTTGAATTC+TGG 0.326652 7.2:+41779164 None:intergenic
GATTGTTTCTGCATCAATAA+TGG 0.349655 7.2:-41779608 MS.gene46085:CDS
TGCAAGTTTAATTTGAAGTA+AGG 0.354969 7.2:+41778869 None:intergenic
AATCTTCAGAAGAGTTATTT+GGG 0.363668 7.2:+41779699 None:intergenic
GCAGTGTCTGAGCATATTAA+AGG 0.368152 7.2:-41778389 MS.gene46085:intron
CAAAGTACCTCATATGTTGC+AGG 0.372770 7.2:-41779634 MS.gene46085:CDS
ATCAATGTTAAGTTTAAGAT+TGG 0.374669 7.2:+41779670 None:intergenic
ATTAGGAGGGAACTGTTCTA+TGG 0.374705 7.2:-41778990 MS.gene46085:CDS
GAAGATAGGAGTCGTGAATA+TGG 0.383191 7.2:-41778743 MS.gene46085:CDS
AGTTTACTCACATTTCCATT+AGG 0.384717 7.2:-41779028 MS.gene46085:CDS
CTCAGCAAATAAGACTTTGT+TGG 0.395054 7.2:+41779913 None:intergenic
ACACTTGAATTCTGGATCAA+TGG 0.401212 7.2:+41779172 None:intergenic
ATACGAACGACTCCTCCTAA+TGG 0.405838 7.2:+41779013 None:intergenic
AAAGTCTTATTTGCTGAGGC+TGG 0.410372 7.2:-41779908 MS.gene46085:CDS
AGATGGACTAAGAACTTATA+TGG 0.410621 7.2:-41778633 MS.gene46085:CDS
AAGACTTGTTGATCCACATT+TGG 0.411738 7.2:-41778894 MS.gene46085:CDS
TTCAAACAACCTATGGTAAC+AGG 0.414044 7.2:+41779797 None:intergenic
GCGAGTGCGACTGAAACTTT+TGG 0.416530 7.2:-41779948 MS.gene46085:CDS
CCGGTGAATTCCACTGAGTT+CGG 0.420356 7.2:+41779449 None:intergenic
CACTTATTGGCCAATGTTGA+GGG 0.430653 7.2:-41778325 MS.gene46085:CDS
AAGAAAGGATTTGTCAAAGA+AGG 0.431327 7.2:-41779509 MS.gene46085:CDS
TCACTTATTGGCCAATGTTG+AGG 0.462243 7.2:-41778326 MS.gene46085:CDS
TTCAACAAATAGAAACTGTA+TGG 0.463521 7.2:-41779573 MS.gene46085:CDS
TTCTTGAAACACTTTAAGAA+AGG 0.465555 7.2:-41779524 MS.gene46085:CDS
CAACATATGAGGTACTTTGT+AGG 0.472765 7.2:+41779638 None:intergenic
TCTTACCTCCTTGATGCCAA+TGG 0.481755 7.2:+41778508 None:intergenic
AAATGAGTTCAAACAACCTA+TGG 0.487108 7.2:+41779790 None:intergenic
AAATGATGATGGTTATATCA+AGG 0.487223 7.2:-41778657 MS.gene46085:CDS
AATTCCTCTTGATGATATGA+AGG 0.487396 7.2:-41778543 MS.gene46085:CDS
GATGACTACTAACTAGGTTC+AGG 0.489314 7.2:+41778696 None:intergenic
AATCAAACCTGCAACATATG+AGG 0.493783 7.2:+41779627 None:intergenic
GCAGTTATGAGAAACATGTT+AGG 0.494533 7.2:-41778721 MS.gene46085:CDS
TCATCATCCGCTCTAACAAA+TGG 0.494553 7.2:-41778355 MS.gene46085:CDS
TCTCAACGTCACTAAAGAAA+AGG 0.500041 7.2:-41779369 MS.gene46085:intron
TTCACACGAGGCTCTTGAAT+AGG 0.500243 7.2:+41778839 None:intergenic
CATAATTCTGAAGCATACTA+AGG 0.507361 7.2:+41779426 None:intergenic
ACAAATAGAAACTGTATGGA+TGG 0.509877 7.2:-41779569 MS.gene46085:CDS
AAGAAAATTGAACGACTCAA+AGG 0.511697 7.2:+41779542 None:intergenic
ATTTGGGATGACTACTAACT+AGG 0.512518 7.2:+41778690 None:intergenic
AAAAGACATAAGTTCAGTAA+AGG 0.513517 7.2:-41779399 MS.gene46085:CDS
AAGGAAAAGCTTGTCACCAT+TGG 0.514654 7.2:-41778524 MS.gene46085:CDS
AAGTCTTATTTGCTGAGGCT+GGG 0.515962 7.2:-41779907 MS.gene46085:CDS
GTACAGAAGGACTCAAACAT+AGG 0.519714 7.2:-41779821 MS.gene46085:CDS
AGTTTCTTGACATTGCCGTT+AGG 0.520091 7.2:-41779860 MS.gene46085:CDS
TTACTCACATTTCCATTAGG+AGG 0.523531 7.2:-41779025 MS.gene46085:CDS
GCTTGTCACCATTGGCATCA+AGG 0.526563 7.2:-41778516 MS.gene46085:CDS
AACTTAACATTGATGACACT+CGG 0.529548 7.2:-41779661 MS.gene46085:CDS
AAAATAGAAAATGTAGAAGA+TGG 0.529603 7.2:+41778587 None:intergenic
AGTCATCCCAAATCACCTAA+AGG 0.545154 7.2:-41778680 MS.gene46085:CDS
TGTTCTATGGGCAACATCGA+TGG 0.547814 7.2:-41778977 MS.gene46085:CDS
GATGGTTATATCAAGGGAGA+TGG 0.548149 7.2:-41778650 MS.gene46085:CDS
AATGATGATGGTTATATCAA+GGG 0.548455 7.2:-41778656 MS.gene46085:CDS
TCACCTAAAGGAAATGATGA+TGG 0.552139 7.2:-41778668 MS.gene46085:CDS
TTGAAGTAAGGTGCCAAATG+TGG 0.553286 7.2:+41778881 None:intergenic
TTATATGGTAACAGATGACT+TGG 0.560415 7.2:-41778618 MS.gene46085:CDS
TTAGGAGGGAACTGTTCTAT+GGG 0.561101 7.2:-41778989 MS.gene46085:CDS
CTTCTGTACGAGTCTTGCGA+TGG 0.567561 7.2:+41779835 None:intergenic
ATTCTGAAGCATACTAAGGC+CGG 0.571691 7.2:+41779430 None:intergenic
GGAGTCGTTCGTATATTAGG+AGG 0.577097 7.2:-41779004 MS.gene46085:CDS
GGCAAGATATTGTATGCTCA+AGG 0.582361 7.2:-41779079 MS.gene46085:CDS
CCGAACTCAGTGGAATTCAC+CGG 0.603210 7.2:-41779449 MS.gene46085:CDS
CTTATTGGCCAATGTTGAGG+GGG 0.604425 7.2:-41778323 MS.gene46085:CDS
TGTTTGAGTAGTAGCAGCCA+TGG 0.605494 7.2:+41779976 None:intergenic
CAACAAAGTCTTATTTGCTG+AGG 0.606736 7.2:-41779912 MS.gene46085:CDS
CTAGTTTATAGAAAATCAGA+TGG 0.609106 7.2:-41779100 MS.gene46085:CDS
CATCGCAAGACTCGTACAGA+AGG 0.609224 7.2:-41779834 MS.gene46085:CDS
GGCTGCTACTACTCAAACAG+AGG 0.620428 7.2:-41779972 MS.gene46085:CDS
ACGAAGACCATTTGTTAGAG+CGG 0.622268 7.2:+41778348 None:intergenic
ACTTATTGGCCAATGTTGAG+GGG 0.633554 7.2:-41778324 MS.gene46085:CDS
AACATAGGACCTGTTACCAT+AGG 0.648944 7.2:-41779806 MS.gene46085:CDS
GAGTCGTTCGTATATTAGGA+GGG 0.655143 7.2:-41779003 MS.gene46085:CDS
GATTGTCAAGCCGAACTCAG+TGG 0.657456 7.2:-41779459 MS.gene46085:CDS
AGTCTTGCGATGGTTCCTAA+CGG 0.688922 7.2:+41779845 None:intergenic
TAACAATAATGCTTCACACG+AGG 0.697194 7.2:+41778827 None:intergenic
TGTCACCATTGGCATCAAGG+AGG 0.741971 7.2:-41778513 MS.gene46085:intron
TGGTTTGTACAAGAGCATAG+CGG 0.742308 7.2:-41778957 MS.gene46085:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAGTTTCAAACTTTT+CGG - chr7.2:41779490-41779509 MS.gene46085:CDS 15.0%
!! AAAATAGAAAATGTAGAAGA+TGG + chr7.2:41779708-41779727 None:intergenic 20.0%
!!! ATCAATGTTAAGTTTAAGAT+TGG + chr7.2:41778625-41778644 None:intergenic 20.0%
!!! TAATAAGTTTCAAACTTTTC+GGG - chr7.2:41779491-41779510 MS.gene46085:CDS 20.0%
! AAAAGACATAAGTTCAGTAA+AGG - chr7.2:41778893-41778912 MS.gene46085:CDS 25.0%
! AATCTTCAGAAGAGTTATTT+GGG + chr7.2:41778596-41778615 None:intergenic 25.0%
! CTAGTTTATAGAAAATCAGA+TGG - chr7.2:41779192-41779211 MS.gene46085:CDS 25.0%
! GAATGATTAGTATTATGTAC+AGG - chr7.2:41779029-41779048 MS.gene46085:CDS 25.0%
! TAATCTTCAGAAGAGTTATT+TGG + chr7.2:41778597-41778616 None:intergenic 25.0%
! TTCAACAAATAGAAACTGTA+TGG - chr7.2:41778719-41778738 MS.gene46085:CDS 25.0%
!! TTCTTGAAACACTTTAAGAA+AGG - chr7.2:41778768-41778787 MS.gene46085:CDS 25.0%
!!! AAATGATGATGGTTATATCA+AGG - chr7.2:41779635-41779654 MS.gene46085:CDS 25.0%
!!! AATGATGATGGTTATATCAA+GGG - chr7.2:41779636-41779655 MS.gene46085:CDS 25.0%
!!! TGCAAGTTTAATTTGAAGTA+AGG + chr7.2:41779426-41779445 None:intergenic 25.0%
AAATGAGTTCAAACAACCTA+TGG + chr7.2:41778505-41778524 None:intergenic 30.0%
AAGAAAATTGAACGACTCAA+AGG + chr7.2:41778753-41778772 None:intergenic 30.0%
AAGAAAGGATTTGTCAAAGA+AGG - chr7.2:41778783-41778802 MS.gene46085:CDS 30.0%
AAGAGAAAACACTTGAATTC+TGG + chr7.2:41779131-41779150 None:intergenic 30.0%
ACAAATAGAAACTGTATGGA+TGG - chr7.2:41778723-41778742 MS.gene46085:CDS 30.0%
AGTTTACTCACATTTCCATT+AGG - chr7.2:41779264-41779283 MS.gene46085:intron 30.0%
ATCATTTCCTTTAGGTGATT+TGG + chr7.2:41779622-41779641 None:intergenic 30.0%
CTTAGTATGCTTCAGAATTA+TGG - chr7.2:41778867-41778886 MS.gene46085:CDS 30.0%
TAACCATCATCATTTCCTTT+AGG + chr7.2:41779630-41779649 None:intergenic 30.0%
TCATTTCCTTTAGGTGATTT+GGG + chr7.2:41779621-41779640 None:intergenic 30.0%
TTATATGGTAACAGATGACT+TGG - chr7.2:41779674-41779693 MS.gene46085:CDS 30.0%
! AACTTAACATTGATGACACT+CGG - chr7.2:41778631-41778650 MS.gene46085:CDS 30.0%
! AATTCCTCTTGATGATATGA+AGG - chr7.2:41779749-41779768 MS.gene46085:CDS 30.0%
! GAACTCATTTTATCAAAGTG+TGG - chr7.2:41778515-41778534 MS.gene46085:CDS 30.0%
! TTTTCATTAGCGATGAAGAT+AGG - chr7.2:41779535-41779554 MS.gene46085:CDS 30.0%
! TTTTCCTTCATATCATCAAG+AGG + chr7.2:41779756-41779775 None:intergenic 30.0%
!! AGATGGACTAAGAACTTATA+TGG - chr7.2:41779659-41779678 MS.gene46085:CDS 30.0%
!! CATAATTCTGAAGCATACTA+AGG + chr7.2:41778869-41778888 None:intergenic 30.0%
!! GATTGTTTCTGCATCAATAA+TGG - chr7.2:41778684-41778703 MS.gene46085:CDS 30.0%
AAATGGTCTTCGTCACTTAT+TGG - chr7.2:41779954-41779973 MS.gene46085:CDS 35.0%
AATCAAACCTGCAACATATG+AGG + chr7.2:41778668-41778687 None:intergenic 35.0%
ACACTTGAATTCTGGATCAA+TGG + chr7.2:41779123-41779142 None:intergenic 35.0%
CTCAGCAAATAAGACTTTGT+TGG + chr7.2:41778382-41778401 None:intergenic 35.0%
GCAGTTATGAGAAACATGTT+AGG - chr7.2:41779571-41779590 MS.gene46085:CDS 35.0%
TAACAATAATGCTTCACACG+AGG + chr7.2:41779468-41779487 None:intergenic 35.0%
TCACCTAAAGGAAATGATGA+TGG - chr7.2:41779624-41779643 MS.gene46085:CDS 35.0%
TCTCAACGTCACTAAAGAAA+AGG - chr7.2:41778923-41778942 MS.gene46085:CDS 35.0%
TTACTCACATTTCCATTAGG+AGG - chr7.2:41779267-41779286 MS.gene46085:intron 35.0%
TTCAAACAACCTATGGTAAC+AGG + chr7.2:41778498-41778517 None:intergenic 35.0%
! ATTTGGGATGACTACTAACT+AGG + chr7.2:41779605-41779624 None:intergenic 35.0%
! CAACATATGAGGTACTTTGT+AGG + chr7.2:41778657-41778676 None:intergenic 35.0%
! TCTCTGACAGATTTGTTTCT+AGG - chr7.2:41779090-41779109 MS.gene46085:CDS 35.0%
!! AAGACTTGTTGATCCACATT+TGG - chr7.2:41779398-41779417 MS.gene46085:CDS 35.0%
!! CAACAAAGTCTTATTTGCTG+AGG - chr7.2:41778380-41778399 MS.gene46085:CDS 35.0%
AACATAGGACCTGTTACCAT+AGG - chr7.2:41778486-41778505 MS.gene46085:intron 40.0%
AAGGAAAAGCTTGTCACCAT+TGG - chr7.2:41779768-41779787 MS.gene46085:CDS 40.0%
ACTTATTGGCCAATGTTGAG+GGG - chr7.2:41779968-41779987 MS.gene46085:CDS 40.0%
AGTCATCCCAAATCACCTAA+AGG - chr7.2:41779612-41779631 MS.gene46085:CDS 40.0%
AGTTTCTTGACATTGCCGTT+AGG - chr7.2:41778432-41778451 MS.gene46085:intron 40.0%
ATTAGGAGGGAACTGTTCTA+TGG - chr7.2:41779302-41779321 MS.gene46085:intron 40.0%
CACTTATTGGCCAATGTTGA+GGG - chr7.2:41779967-41779986 MS.gene46085:CDS 40.0%
GAAGATAGGAGTCGTGAATA+TGG - chr7.2:41779549-41779568 MS.gene46085:CDS 40.0%
GAGTCGTTCGTATATTAGGA+GGG - chr7.2:41779289-41779308 MS.gene46085:intron 40.0%
GATGACTACTAACTAGGTTC+AGG + chr7.2:41779599-41779618 None:intergenic 40.0%
GATGGTTATATCAAGGGAGA+TGG - chr7.2:41779642-41779661 MS.gene46085:CDS 40.0%
GCAGTGTCTGAGCATATTAA+AGG - chr7.2:41779903-41779922 MS.gene46085:CDS 40.0%
GGCAAGATATTGTATGCTCA+AGG - chr7.2:41779213-41779232 MS.gene46085:CDS 40.0%
GTACAGAAGGACTCAAACAT+AGG - chr7.2:41778471-41778490 MS.gene46085:intron 40.0%
TCACTTATTGGCCAATGTTG+AGG - chr7.2:41779966-41779985 MS.gene46085:CDS 40.0%
TCATCATCCGCTCTAACAAA+TGG - chr7.2:41779937-41779956 MS.gene46085:CDS 40.0%
TTAGGAGGGAACTGTTCTAT+GGG - chr7.2:41779303-41779322 MS.gene46085:intron 40.0%
! ACGAAGACCATTTGTTAGAG+CGG + chr7.2:41779947-41779966 None:intergenic 40.0%
! CAAAGTACCTCATATGTTGC+AGG - chr7.2:41778658-41778677 MS.gene46085:CDS 40.0%
! TGGTTTGTACAAGAGCATAG+CGG - chr7.2:41779335-41779354 MS.gene46085:intron 40.0%
! TTGAAGTAAGGTGCCAAATG+TGG + chr7.2:41779414-41779433 None:intergenic 40.0%
!! AAAGTCTTATTTGCTGAGGC+TGG - chr7.2:41778384-41778403 MS.gene46085:CDS 40.0%
!! AAGTCTTATTTGCTGAGGCT+GGG - chr7.2:41778385-41778404 MS.gene46085:CDS 40.0%
!! ATTCTGAAGCATACTAAGGC+CGG + chr7.2:41778865-41778884 None:intergenic 40.0%
AGTCTTGCGATGGTTCCTAA+CGG + chr7.2:41778450-41778469 None:intergenic 45.0%
ATACGAACGACTCCTCCTAA+TGG + chr7.2:41779282-41779301 None:intergenic 45.0%
CTTATTGGCCAATGTTGAGG+GGG - chr7.2:41779969-41779988 MS.gene46085:CDS 45.0%
GGAGGAGTCGTTCGTATATT+AGG - chr7.2:41779285-41779304 MS.gene46085:intron 45.0%
GGAGTCGTTCGTATATTAGG+AGG - chr7.2:41779288-41779307 MS.gene46085:intron 45.0%
TCTTACCTCCTTGATGCCAA+TGG + chr7.2:41779787-41779806 None:intergenic 45.0%
TGTTCTATGGGCAACATCGA+TGG - chr7.2:41779315-41779334 MS.gene46085:intron 45.0%
TTCACACGAGGCTCTTGAAT+AGG + chr7.2:41779456-41779475 None:intergenic 45.0%
CATCGCAAGACTCGTACAGA+AGG - chr7.2:41778458-41778477 MS.gene46085:intron 50.0%
CCGAACTCAGTGGAATTCAC+CGG - chr7.2:41778843-41778862 MS.gene46085:CDS 50.0%
CCGGTGAATTCCACTGAGTT+CGG + chr7.2:41778846-41778865 None:intergenic 50.0%
CTCAGACACTGCAACAACAC+AGG + chr7.2:41779895-41779914 None:intergenic 50.0%
CTTCTGTACGAGTCTTGCGA+TGG + chr7.2:41778460-41778479 None:intergenic 50.0%
GATTGTCAAGCCGAACTCAG+TGG - chr7.2:41778833-41778852 MS.gene46085:CDS 50.0%
GCTTGTCACCATTGGCATCA+AGG - chr7.2:41779776-41779795 MS.gene46085:CDS 50.0%
GGCTGCTACTACTCAAACAG+AGG - chr7.2:41778320-41778339 MS.gene46085:CDS 50.0%
TGTCACCATTGGCATCAAGG+AGG - chr7.2:41779779-41779798 MS.gene46085:CDS 50.0%
! GCGAGTGCGACTGAAACTTT+TGG - chr7.2:41778344-41778363 MS.gene46085:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41778318 41779996 41778318 ID=MS.gene46085
chr7.2 mRNA 41778318 41779996 41778318 ID=MS.gene46085.t1;Parent=MS.gene46085
chr7.2 exon 41779370 41779996 41779370 ID=MS.gene46085.t1.exon1;Parent=MS.gene46085.t1
chr7.2 CDS 41779370 41779996 41779370 ID=cds.MS.gene46085.t1;Parent=MS.gene46085.t1
chr7.2 exon 41778514 41779263 41778514 ID=MS.gene46085.t1.exon2;Parent=MS.gene46085.t1
chr7.2 CDS 41778514 41779263 41778514 ID=cds.MS.gene46085.t1;Parent=MS.gene46085.t1
chr7.2 exon 41778318 41778407 41778318 ID=MS.gene46085.t1.exon3;Parent=MS.gene46085.t1
chr7.2 CDS 41778318 41778407 41778318 ID=cds.MS.gene46085.t1;Parent=MS.gene46085.t1
Gene Sequence

>MS.gene46085

ATGGCTGCTACTACTCAAACAGAGGAGCGAGTGCGACTGAAACTTTTGGTGAACAAAGAAACCAACAAAGTCTTATTTGCTGAGGCTGGGAAAGACTTTGTCGATGTTCTATTTAGTTTCTTGACATTGCCGTTAGGAACCATCGCAAGACTCGTACAGAAGGACTCAAACATAGGACCTGTTACCATAGGTTGTTTGAACTCATTTTATCAAAGTGTGGTAGATCTCGACGAAGAGTGTATGCAGACTGAGACAAGCAAAGAAATGATATTACACCCAAATAACTCTTCTGAAGATTATTGCACCAATCTTAAACTTAACATTGATGACACTCGGCCTACAAAGTACCTCATATGTTGCAGGTTTGATTGTTTCTGCATCAATAATGGTTATTTCTACAATTCAACAAATAGAAACTGTATGGATGGAAAACCTTTGAGTCGTTCAATTTTCTTGAAACACTTTAAGAAAGGATTTGTCAAAGAAGGTGTTTCTTTTGTTATTTCTGATGATCTGATTGTCAAGCCGAACTCAGTGGAATTCACCGGCCTTAGTATGCTTCAGAATTATGGAATAAAAGACATAAGTTCAGTAAAGGAAATGACTCTCAACGTCACTAAAGAAAAGGTTATATATTTTATAGTTGTGTTCGCTAATTTGTTGCTTGCTTCACATACATCGCTTTTTAATTTTTGTCATAAATTCATTTTTGAATGATTAGTATTATGTACAGGTACTCGATCTTTTAAAGTGTGCTTTGCTTTCGAAGTCGTCTCTGACAGATTTGTTTCTAGGAAAGAAACCATTGATCCAGAATTCAAGTGTTTTCTCTTGTAATGTTGCAAATAGTAGTAATATCAAAATCAGATTGAAGCTAGTTTATAGAAAATCAGATGGCAAGATATTGTATGCTCAAGGAGAAAAAGATTTTGCAGACTTGCTTTTAAGTTTACTCACATTTCCATTAGGAGGAGTCGTTCGTATATTAGGAGGGAACTGTTCTATGGGCAACATCGATGGTTTGTACAAGAGCATAGCGGATTTGCATGAAAACACATATTTGTCAAGAGAAGCAAAGAAAAGACTTGTTGATCCACATTTGGCACCTTACTTCAAATTAAACTTGCAGATATTACCTATTCAAGAGCCTCGTGTGAAGCATTATTGTTACTATAATAAGTTTCAAACTTTTCGGGATAGTGTTATTCATAATCAATTTTTCATTAGCGATGAAGATAGGAGTCGTGAATATGGCAGTTATGAGAAACATGTTAGGTACCTGAACCTAGTTAGTAGTCATCCCAAATCACCTAAAGGAAATGATGATGGTTATATCAAGGGAGATGGACTAAGAACTTATATGGTAACAGATGACTTGGTCATTGCACCATCTTCTACATTTTCTATTTTACATTTAATCAACAATTTCAAAATTCCTCTTGATGATATGAAGGAAAAGCTTGTCACCATTGGCATCAAGGAGGTAAGAAAGAACTTAATCTATTCATAGATCTATGTTTCGTGTTATTTTATGTGTTATATTGATTGAATGTATTTACTGCTAACTATATATTCCTGTGTTGTTGCAGTGTCTGAGCATATTAAAGGCAGCTTTGTCGTCATCATCCGCTCTAACAAATGGTCTTCGTCACTTATTGGCCAATGTTGAGGGGGAGTAA
Protein sequence

>MS.gene46085.t1

MAATTQTEERVRLKLLVNKETNKVLFAEAGKDFVDVLFSFLTLPLGTIARLVQKDSNIGPVTIGCLNSFYQSVVDLDEECMQTETSKEMILHPNNSSEDYCTNLKLNIDDTRPTKYLICCRFDCFCINNGYFYNSTNRNCMDGKPLSRSIFLKHFKKGFVKEGVSFVISDDLIVKPNSVEFTGLSMLQNYGIKDISSVKEMTLNVTKEKVLDLLKCALLSKSSLTDLFLGKKPLIQNSSVFSCNVANSSNIKIRLKLVYRKSDGKILYAQGEKDFADLLLSLLTFPLGGVVRILGGNCSMGNIDGLYKSIADLHENTYLSREAKKRLVDPHLAPYFKLNLQILPIQEPRVKHYCYYNKFQTFRDSVIHNQFFISDEDRSREYGSYEKHVRYLNLVSSHPKSPKGNDDGYIKGDGLRTYMVTDDLVIAPSSTFSILHLINNFKIPLDDMKEKLVTIGIKECLSILKAALSSSSALTNGLRHLLANVEGE