AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001108

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001108.t1 MTR_2g029400 54.988 411 122 8 1 354 1 405 1.24e-134 390
MS.gene001108.t1 MTR_7g066580 40.839 453 160 9 20 370 1 447 5.50e-90 278
MS.gene001108.t1 MTR_7g066290 40.363 441 175 10 2 364 3 433 3.50e-82 257
MS.gene001108.t1 MTR_7g066310 44.162 394 166 11 11 364 4 383 4.84e-82 256
MS.gene001108.t1 MTR_7g012680 54.032 248 74 3 1 209 1 247 3.31e-76 243
MS.gene001108.t1 MTR_7g012680 50.303 165 59 3 203 367 307 448 4.00e-34 131
MS.gene001108.t1 MTR_7g066570 65.605 157 54 0 1 157 1 157 3.44e-65 217
MS.gene001108.t1 MTR_7g066570 55.689 167 68 2 203 367 321 483 1.52e-45 164
MS.gene001108.t1 MTR_7g058710 65.409 159 40 2 2 160 3 146 8.72e-64 211
MS.gene001108.t1 MTR_7g058710 59.887 177 65 4 197 372 313 484 1.35e-54 187
MS.gene001108.t1 MTR_7g066260 61.538 156 58 2 2 156 3 157 7.25e-59 198
MS.gene001108.t1 MTR_7g066260 49.697 165 51 5 203 367 333 465 1.97e-28 116
MS.gene001108.t1 MTR_7g066490 35.835 413 194 10 14 370 16 413 6.38e-58 194
MS.gene001108.t1 MTR_7g066680 55.789 190 49 2 203 361 150 335 2.05e-54 182
MS.gene001108.t1 MTR_7g066680 67.273 55 18 0 162 216 43 97 7.84e-13 69.3
MS.gene001108.t1 MTR_7g066340 63.087 149 52 2 1 148 1 147 2.54e-54 186
MS.gene001108.t1 MTR_7g066340 33.209 268 79 4 162 364 221 453 2.50e-24 104
MS.gene001108.t1 MTR_7g066350 64.336 143 49 2 10 151 5 146 2.74e-54 186
MS.gene001108.t1 MTR_7g066350 37.021 235 109 8 162 361 216 446 1.89e-21 95.9
MS.gene001108.t1 MTR_1g014060 65.185 135 46 1 23 157 9 142 1.28e-53 182
MS.gene001108.t1 MTR_1g014060 46.012 163 67 4 204 366 245 386 3.91e-32 125
MS.gene001108.t1 MTR_7g066360 60.131 153 58 3 1 153 1 150 5.18e-51 177
MS.gene001108.t1 MTR_7g066360 40.373 161 63 3 204 364 322 449 7.25e-21 94.0
MS.gene001108.t1 MTR_1g041315 53.896 154 66 2 1 152 1 151 8.22e-48 169
MS.gene001108.t1 MTR_1g041315 40.714 140 47 4 209 348 348 451 1.82e-18 87.0
MS.gene001108.t1 MTR_7g058700 62.963 135 36 1 26 160 531 651 2.52e-47 172
MS.gene001108.t1 MTR_7g058700 38.793 232 118 4 147 372 715 928 1.17e-30 124
MS.gene001108.t1 MTR_7g066410 57.971 138 57 1 15 152 11 147 1.77e-46 166
MS.gene001108.t1 MTR_7g066410 41.071 168 94 2 203 365 346 513 4.96e-26 109
MS.gene001108.t1 MTR_7g066430 52.448 143 68 0 14 156 4 146 5.48e-45 162
MS.gene001108.t1 MTR_7g066430 43.258 178 88 5 201 369 317 490 7.64e-30 120
MS.gene001108.t1 MTR_7g063660 47.170 159 76 2 1 159 1 151 3.93e-38 142
MS.gene001108.t1 MTR_7g063660 45.055 91 49 1 282 372 389 478 1.49e-16 81.3
MS.gene001108.t1 MTR_7g063840 49.689 161 75 3 1 161 1 155 8.78e-38 142
MS.gene001108.t1 MTR_7g063840 39.634 164 85 6 212 372 322 474 1.01e-22 99.8
MS.gene001108.t1 MTR_7g063880 50.980 153 68 3 1 152 1 147 7.67e-36 136
MS.gene001108.t1 MTR_7g063880 37.888 161 79 5 212 365 317 463 5.71e-18 85.5
MS.gene001108.t1 MTR_7g062300 46.980 149 74 2 4 149 2 148 1.35e-35 135
MS.gene001108.t1 MTR_7g062300 35.838 173 83 6 198 360 315 469 3.53e-17 83.2
MS.gene001108.t1 MTR_7g062300 37.500 128 69 4 14 140 256 373 1.70e-14 75.1
MS.gene001108.t1 MTR_7g063890 52.308 130 56 1 4 127 11 140 1.35e-35 136
MS.gene001108.t1 MTR_7g063900 53.226 124 56 1 4 127 2 123 4.16e-35 134
MS.gene001108.t1 MTR_7g063900 36.667 180 96 6 198 365 310 483 2.56e-13 71.2
MS.gene001108.t1 MTR_7g066480 58.559 111 46 0 13 123 15 125 4.56e-34 130
MS.gene001108.t1 MTR_7g066480 34.545 220 122 5 162 370 219 427 5.14e-20 91.3
MS.gene001108.t1 MTR_7g062280 44.654 159 73 3 4 149 2 158 3.66e-33 129
MS.gene001108.t1 MTR_7g062280 38.983 177 97 4 198 372 325 492 8.24e-23 100
MS.gene001108.t1 MTR_7g062280 44.706 85 41 2 14 97 266 345 1.21e-13 72.4
MS.gene001108.t1 MTR_7g066400 47.586 145 46 2 10 154 8 122 4.05e-33 128
MS.gene001108.t1 MTR_7g066400 40.506 158 66 3 203 360 304 433 1.02e-23 102
MS.gene001108.t1 MTR_7g063920 41.872 203 90 5 1 180 1 198 1.35e-32 127
MS.gene001108.t1 MTR_7g063920 37.427 171 94 4 202 372 280 437 6.00e-21 94.0
MS.gene001108.t1 MTR_7g063920 38.824 85 46 2 14 97 217 296 4.68e-11 64.3
MS.gene001108.t1 MTR_7g062270 44.444 135 75 0 15 149 11 145 7.53e-30 118
MS.gene001108.t1 MTR_7g063820 54.630 108 48 1 15 122 11 117 6.37e-29 117
MS.gene001108.t1 MTR_7g063820 39.535 172 96 7 204 372 319 485 7.47e-20 91.3
MS.gene001108.t1 MTR_7g063830 47.826 115 60 0 8 122 4 118 7.28e-29 116
MS.gene001108.t1 MTR_3g065200 42.069 145 71 2 12 156 1 132 5.80e-27 111
MS.gene001108.t1 MTR_3g065200 38.732 142 78 3 213 351 273 408 7.29e-19 88.2
MS.gene001108.t1 MTR_4g019310 43.709 151 73 4 11 152 5 152 7.30e-27 111
MS.gene001108.t1 MTR_4g019310 34.254 181 98 5 201 370 326 496 1.21e-17 84.7
MS.gene001108.t1 MTR_3g007740 49.558 113 45 1 13 125 8 108 7.01e-25 105
MS.gene001108.t1 MTR_3g007740 48.235 85 43 1 282 365 359 443 3.44e-14 73.9
MS.gene001108.t1 MTR_7g066280 42.262 168 60 3 197 364 260 390 1.02e-24 104
MS.gene001108.t1 MTR_7g063720 37.143 175 87 5 198 372 82 233 1.78e-24 100
MS.gene001108.t1 MTR_7g063720 30.357 112 70 3 14 124 23 127 1.65e-11 63.9
MS.gene001108.t1 MTR_7g063670 47.458 118 48 3 10 127 13 116 1.92e-24 104
MS.gene001108.t1 MTR_7g063670 38.776 147 77 6 225 370 323 457 2.17e-15 77.8
MS.gene001108.t1 MTR_7g066390 57.778 90 33 1 275 364 38 122 4.00e-24 97.4
MS.gene001108.t1 MTR_4g017610 37.662 154 79 4 4 148 3 148 8.29e-22 97.1
MS.gene001108.t1 MTR_4g017410 37.500 152 76 4 8 148 3 146 1.92e-21 95.9
MS.gene001108.t1 MTR_4g019340 37.671 146 71 3 15 148 39 176 1.82e-20 93.2
MS.gene001108.t1 MTR_4g017440 37.888 161 79 5 1 148 1 153 3.64e-20 92.0
MS.gene001108.t1 MTR_2g067310 47.525 101 44 2 25 125 58 149 1.07e-19 87.8
MS.gene001108.t1 MTR_4g017470 37.190 121 66 1 10 120 8 128 1.86e-18 87.0
MS.gene001108.t1 MTR_4g017830 35.762 151 82 4 4 147 2 144 3.94e-18 86.3
MS.gene001108.t1 MTR_4g017830 39.796 98 59 0 273 370 410 507 3.23e-14 74.3
MS.gene001108.t1 MTR_7g063850 35.593 177 96 6 201 370 123 288 5.33e-17 80.9
MS.gene001108.t1 MTR_7g100420 36.585 164 90 6 202 360 239 393 4.30e-16 79.3
MS.gene001108.t1 MTR_7g100420 55.932 59 22 1 15 69 40 98 6.44e-12 67.0
MS.gene001108.t1 MTR_7g063760 50.685 73 35 1 299 370 1 73 3.52e-15 70.1
MS.gene001108.t1 MTR_4g019240 40.000 115 55 5 10 114 9 119 3.66e-14 70.5
MS.gene001108.t1 MTR_1g115450 36.735 98 50 2 1 98 1 86 1.70e-13 67.8
MS.gene001108.t1 MTR_7g063690 58.065 62 24 1 1 62 1 60 3.60e-13 68.9
MS.gene001108.t1 MTR_1g115470 39.773 88 48 1 14 101 6 88 8.53e-13 69.7
MS.gene001108.t1 MTR_1g115455 40.000 85 46 1 14 98 9 88 3.32e-12 65.9
MS.gene001108.t1 MTR_0150s0030 40.000 85 45 2 14 97 8 87 3.34e-12 65.5
MS.gene001108.t1 MTR_0150s0010 38.462 91 51 1 8 98 4 89 5.14e-12 65.5
MS.gene001108.t1 MTR_8g445860 35.714 98 51 2 1 98 7 92 1.25e-11 64.3
MS.gene001108.t1 MTR_8g044880 37.778 90 50 2 14 102 8 92 1.27e-11 65.1
MS.gene001108.t1 MTR_1g115440 38.824 85 47 1 13 97 10 89 2.64e-11 63.5
MS.gene001108.t1 MTR_1g115440 29.670 182 106 5 194 357 55 232 6.16e-11 62.4
MS.gene001108.t1 MTR_8g445910 38.824 85 46 2 14 97 8 87 4.22e-11 63.2
MS.gene001108.t1 MTR_7g063870 54.545 55 25 0 8 62 25 79 5.53e-11 62.8
MS.gene001108.t1 MTR_8g023240 28.777 139 82 4 15 152 38 160 6.97e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001108.t1 AT3G09110 42.553 141 74 2 14 151 9 145 2.33e-30 119
MS.gene001108.t1 AT3G09120 39.189 148 86 2 13 160 5 148 5.77e-29 114
MS.gene001108.t1 AT5G01120 39.103 156 87 3 1 155 1 149 4.01e-27 112
MS.gene001108.t1 AT5G43240 37.857 140 86 1 15 154 10 148 8.04e-27 111
MS.gene001108.t1 AT5G43240 37.857 140 86 1 15 154 10 148 8.04e-27 111
MS.gene001108.t1 AT5G43240 37.857 140 86 1 15 154 10 148 8.04e-27 111
MS.gene001108.t1 AT3G09140 37.908 153 87 3 1 153 1 145 2.30e-26 110
MS.gene001108.t1 AT3G09140 37.908 153 87 3 1 153 1 145 2.40e-26 110
MS.gene001108.t1 AT5G01150 38.849 139 78 1 14 152 9 140 2.27e-23 101
MS.gene001108.t1 AT5G01130 35.862 145 85 2 14 158 9 145 1.32e-19 90.5
MS.gene001108.t1 AT5G37320 34.615 130 83 2 24 152 19 147 5.56e-19 88.6
MS.gene001108.t1 AT5G01140 30.769 156 82 3 1 156 1 130 6.33e-13 70.1

Find 72 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTCGTAATTACTTTAA+TGG 0.091960 7.1:-35115906 MS.gene001108:CDS
GAGAGCCGTTTGAGCATATT+TGG 0.153668 7.1:-35117026 MS.gene001108:CDS
TCTTCATTTCCCTTCCTTAA+TGG 0.193107 7.1:+35115431 None:intergenic
CGTTTCAATATTTGACTCTT+TGG 0.196606 7.1:+35117256 None:intergenic
ATTGAGTAGCATTCCTTTAC+AGG 0.215066 7.1:+35117160 None:intergenic
ACTGCTATTTCACATCTAAA+TGG 0.280023 7.1:-35115687 MS.gene001108:CDS
ATTCTTAACAACAACCATTA+AGG 0.282679 7.1:-35115445 MS.gene001108:CDS
ACTCAATCCTAGAAACTCTA+TGG 0.291847 7.1:-35117144 MS.gene001108:CDS
CAAAATTACCTTGAAAGTTA+TGG 0.309977 7.1:-35117387 MS.gene001108:CDS
AATATTGAAACGGTGAGATT+TGG 0.336145 7.1:-35117245 MS.gene001108:CDS
TAAGGTCCCATAGAGTTTCT+AGG 0.339300 7.1:+35117137 None:intergenic
TCAGAGTCTCAGCATTCTTA+AGG 0.345070 7.1:-35115511 MS.gene001108:intron
AGGTAAGGTAGCTGCGGAAA+TGG 0.370071 7.1:+35115935 None:intergenic
TTTATCCACCATAACTTTCA+AGG 0.374704 7.1:+35117379 None:intergenic
AGAGCCGTTTGAGCATATTT+GGG 0.417720 7.1:-35117025 MS.gene001108:CDS
TAATGGTTGTTGTTAAGAAT+TGG 0.422993 7.1:+35115448 None:intergenic
TCAACGTCTGCTTTGACAAA+TGG 0.431147 7.1:-35115477 MS.gene001108:CDS
AAATGGTTCAAACGTTCCTC+TGG 0.443128 7.1:-35115670 MS.gene001108:CDS
TGAAGATGAAGTTTGTCAAA+GGG 0.457887 7.1:+35116321 None:intergenic
GGTAAGGTAGCTGCGGAAAT+GGG 0.462924 7.1:+35115936 None:intergenic
TTGTCAAATTCATCACGAAA+AGG 0.466842 7.1:+35116290 None:intergenic
AAAGTTCTGTATGCTGGTGC+AGG 0.470728 7.1:-35117347 MS.gene001108:CDS
CTATGCTCACATACCTGTAA+AGG 0.481421 7.1:-35117173 MS.gene001108:CDS
AGATCAAATTGCGCTGCAAT+GGG 0.483035 7.1:+35115975 None:intergenic
AGTTGTAGAGAGTTTGCAAA+AGG 0.488467 7.1:-35115765 MS.gene001108:CDS
GATTCCCAAATATGCTCAAA+CGG 0.492105 7.1:+35117021 None:intergenic
GGGAATCAAAAGTGCAGTTG+TGG 0.497644 7.1:-35117005 MS.gene001108:CDS
TTGAAGATGAAGTTTGTCAA+AGG 0.502171 7.1:+35116320 None:intergenic
GGAATCAAAAGTGCAGTTGT+GGG 0.503488 7.1:-35117004 MS.gene001108:CDS
AGCTTCTTAACATTACCTCT+AGG 0.504092 7.1:-35117299 MS.gene001108:CDS
TCACAGATGAAGTGCTGCAT+GGG 0.505118 7.1:+35117077 None:intergenic
AAGAACAAAGTTCTGTATGC+TGG 0.508869 7.1:-35117353 MS.gene001108:CDS
CGTTAGTATTGGTGTGAAGG+AGG 0.516627 7.1:-35115628 MS.gene001108:intron
GATCGTTAGTATTGGTGTGA+AGG 0.528639 7.1:-35115631 MS.gene001108:CDS
GCTTCTTAACATTACCTCTA+GGG 0.530311 7.1:-35117298 MS.gene001108:CDS
CAAAGAGTCAAATATTGAAA+CGG 0.532418 7.1:-35117255 MS.gene001108:CDS
TTAACAACAACCATTAAGGA+AGG 0.533817 7.1:-35115441 MS.gene001108:CDS
AATGTGTGTGCGCTTGAACT+TGG 0.537520 7.1:-35115820 MS.gene001108:CDS
GAGATCAAATTGCGCTGCAA+TGG 0.537594 7.1:+35115974 None:intergenic
TCTGTATGCTGGTGCAGGGA+AGG 0.541562 7.1:-35117342 MS.gene001108:CDS
TTCACAGATGAAGTGCTGCA+TGG 0.544261 7.1:+35117076 None:intergenic
AGCATCAGCTCACTGTATCA+AGG 0.544512 7.1:-35117221 MS.gene001108:CDS
CTCTGGTTGATGTGGAGGAA+AGG 0.550463 7.1:-35115653 MS.gene001108:CDS
AAACGTTCCTCTGGTTGATG+TGG 0.554060 7.1:-35115661 MS.gene001108:CDS
CGTTCCTCTGGTTGATGTGG+AGG 0.555837 7.1:-35115658 MS.gene001108:CDS
AGGTGTCATCTGAAGAGGAT+AGG 0.557672 7.1:-35116238 MS.gene001108:CDS
CGGAGAGGTGTCATCTGAAG+AGG 0.558136 7.1:-35116243 MS.gene001108:CDS
AATTACCTTGAAAGTTATGG+TGG 0.559390 7.1:-35117384 MS.gene001108:CDS
GAGCAATACAAGTATAAGAA+CGG 0.568493 7.1:-35116263 MS.gene001108:CDS
CTAAACTCACATTCTGGTGG+TGG 0.570262 7.1:+35116957 None:intergenic
CTTAATGTCACAGGGACTCA+AGG 0.571172 7.1:-35116015 MS.gene001108:intron
GAGGAAAGGATCGTTAGTAT+TGG 0.574759 7.1:-35115639 MS.gene001108:CDS
GTGCAGTTGTGGGAATGTAA+TGG 0.575055 7.1:-35116994 MS.gene001108:CDS
ATACATGGTTACAGACGACT+TGG 0.582865 7.1:-35115733 MS.gene001108:CDS
CTCAATCCTAGAAACTCTAT+GGG 0.592737 7.1:-35117143 MS.gene001108:CDS
TAATTACGACAATAATAGAC+AGG 0.595918 7.1:+35115915 None:intergenic
TCAAATTGCGCTGCAATGGG+AGG 0.604920 7.1:+35115978 None:intergenic
AAAAGGAACATCAATATACA+TGG 0.607414 7.1:-35115748 MS.gene001108:CDS
TAGATGTGAAATAGCAGTAG+AGG 0.608824 7.1:+35115692 None:intergenic
TAACAACAACCATTAAGGAA+GGG 0.609316 7.1:-35115440 MS.gene001108:CDS
CAAAGGGGTCTTTGAGACCA+AGG 0.610976 7.1:+35116337 None:intergenic
AAGTTCTGTATGCTGGTGCA+GGG 0.618169 7.1:-35117346 MS.gene001108:CDS
ATAGCAGTAGAGGACGACAT+TGG 0.618316 7.1:+35115702 None:intergenic
ACGACAATAATAGACAGGTA+AGG 0.624172 7.1:+35115920 None:intergenic
CAGCTCACTGTATCAAGGTG+TGG 0.646111 7.1:-35117216 MS.gene001108:CDS
ATAGACAGGTAAGGTAGCTG+CGG 0.651660 7.1:+35115929 None:intergenic
GAAGATGAAGTTTGTCAAAG+GGG 0.652296 7.1:+35116322 None:intergenic
GTTCTAAACTCACATTCTGG+TGG 0.663509 7.1:+35116954 None:intergenic
ATTTGTCAAAGCAGACGTTG+AGG 0.676779 7.1:+35115479 None:intergenic
AGTCTTGCAATAGTCCCTAG+AGG 0.713115 7.1:+35117284 None:intergenic
CTTTCCTCCACATCAACCAG+AGG 0.716807 7.1:+35115654 None:intergenic
ATACAAGTATAAGAACGGAG+AGG 0.749333 7.1:-35116258 MS.gene001108:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAATATATGTTATAAA+TGG + chr7.1:35116272-35116291 None:intergenic 10.0%
!!! TGTGATTATTTTAATATTTA+TGG - chr7.1:35117013-35117032 MS.gene001108:CDS 10.0%
!!! TTTAGTATTATTACTTTTTT+TGG - chr7.1:35116285-35116304 MS.gene001108:CDS 10.0%
!! TATTGTCGTAATTACTTTAA+TGG - chr7.1:35116953-35116972 MS.gene001108:intron 20.0%
!!! TTCTATTTTTTGAATTTTGC+AGG - chr7.1:35116491-35116510 MS.gene001108:intron 20.0%
! AAAAGGAACATCAATATACA+TGG - chr7.1:35117111-35117130 MS.gene001108:CDS 25.0%
! ATTCTTAACAACAACCATTA+AGG - chr7.1:35117414-35117433 MS.gene001108:CDS 25.0%
! CAAAATTACCTTGAAAGTTA+TGG - chr7.1:35115472-35115491 MS.gene001108:CDS 25.0%
! CAAAGAGTCAAATATTGAAA+CGG - chr7.1:35115604-35115623 MS.gene001108:intron 25.0%
! GTAGAATCGATATAAGAAAT+CGG + chr7.1:35116341-35116360 None:intergenic 25.0%
! TAATTACGACAATAATAGAC+AGG + chr7.1:35116947-35116966 None:intergenic 25.0%
!! ACAACTTTTCCAAAAACATT+AGG + chr7.1:35115987-35116006 None:intergenic 25.0%
!! CGATAGATTTTACCTATTTT+GGG + chr7.1:35116195-35116214 None:intergenic 25.0%
!! CTCTATCTTGATAATATCAA+CGG + chr7.1:35116046-35116065 None:intergenic 25.0%
!! TAAAATCGAAATTTTGCTTC+AGG + chr7.1:35116436-35116455 None:intergenic 25.0%
!! TAATGGTTGTTGTTAAGAAT+TGG + chr7.1:35117414-35117433 None:intergenic 25.0%
!! TCGATAGATTTTACCTATTT+TGG + chr7.1:35116196-35116215 None:intergenic 25.0%
!! TGATAATTTGTACAAAAGTG+TGG - chr7.1:35116799-35116818 MS.gene001108:intron 25.0%
AAAATCGCAATCAAGATTGA+TGG + chr7.1:35116317-35116336 None:intergenic 30.0%
AATATTGAAACGGTGAGATT+TGG - chr7.1:35115614-35115633 MS.gene001108:intron 30.0%
AATTACCTTGAAAGTTATGG+TGG - chr7.1:35115475-35115494 MS.gene001108:CDS 30.0%
CGTTGATATTATCAAGATAG+AGG - chr7.1:35116044-35116063 MS.gene001108:intron 30.0%
CGTTTCAATATTTGACTCTT+TGG + chr7.1:35115606-35115625 None:intergenic 30.0%
CTGTGACATTAAGTATGTAT+CGG + chr7.1:35116837-35116856 None:intergenic 30.0%
GAGCAATACAAGTATAAGAA+CGG - chr7.1:35116596-35116615 MS.gene001108:intron 30.0%
GATACATACTTAATGTCACA+GGG - chr7.1:35116836-35116855 MS.gene001108:intron 30.0%
GTATTGCGAATAAAATCAAC+TGG - chr7.1:35116659-35116678 MS.gene001108:intron 30.0%
TAACAACAACCATTAAGGAA+GGG - chr7.1:35117419-35117438 MS.gene001108:CDS 30.0%
TGAAGATGAAGTTTGTCAAA+GGG + chr7.1:35116541-35116560 None:intergenic 30.0%
TTAACAACAACCATTAAGGA+AGG - chr7.1:35117418-35117437 MS.gene001108:CDS 30.0%
TTGAAGATGAAGTTTGTCAA+AGG + chr7.1:35116542-35116561 None:intergenic 30.0%
TTGTCAAATTCATCACGAAA+AGG + chr7.1:35116572-35116591 None:intergenic 30.0%
TTGTGCATCTACTTAAATGT+TGG - chr7.1:35116003-35116022 MS.gene001108:CDS 30.0%
TTTATCCACCATAACTTTCA+AGG + chr7.1:35115483-35115502 None:intergenic 30.0%
! AGCTTCATTTTCTTGCAATA+AGG + chr7.1:35115743-35115762 None:intergenic 30.0%
! TCTATGATGCCTAATGTTTT+TGG - chr7.1:35115975-35115994 MS.gene001108:CDS 30.0%
! TGAGAAAAGTTGATCAACAA+AGG + chr7.1:35116463-35116482 None:intergenic 30.0%
! TGAGTAAAATCCTTCGATTT+TGG - chr7.1:35116370-35116389 MS.gene001108:intron 30.0%
!! ACTGCTATTTCACATCTAAA+TGG - chr7.1:35117172-35117191 MS.gene001108:CDS 30.0%
!! GATTTTGATGTAGAGAACTT+GGG + chr7.1:35117070-35117089 None:intergenic 30.0%
!! TGATTTTGATGTAGAGAACT+TGG + chr7.1:35117071-35117090 None:intergenic 30.0%
AAGAACAAAGTTCTGTATGC+TGG - chr7.1:35115506-35115525 MS.gene001108:CDS 35.0%
ACGACAATAATAGACAGGTA+AGG + chr7.1:35116942-35116961 None:intergenic 35.0%
ACTCAATCCTAGAAACTCTA+TGG - chr7.1:35115715-35115734 MS.gene001108:CDS 35.0%
AGCACTTCATCTGTGAAAAA+TGG - chr7.1:35115789-35115808 MS.gene001108:CDS 35.0%
AGCTTCTTAACATTACCTCT+AGG - chr7.1:35115560-35115579 MS.gene001108:intron 35.0%
AGTTGTAGAGAGTTTGCAAA+AGG - chr7.1:35117094-35117113 MS.gene001108:CDS 35.0%
ATACAAGTATAAGAACGGAG+AGG - chr7.1:35116601-35116620 MS.gene001108:intron 35.0%
ATATGCAACACTCCTCATAA+TGG + chr7.1:35116749-35116768 None:intergenic 35.0%
ATTGAGTAGCATTCCTTTAC+AGG + chr7.1:35115702-35115721 None:intergenic 35.0%
CAACTTGAATCCTAAAATCC+AGG - chr7.1:35116122-35116141 MS.gene001108:intron 35.0%
CGATACATACTTAATGTCAC+AGG - chr7.1:35116835-35116854 MS.gene001108:intron 35.0%
CTCAATCCTAGAAACTCTAT+GGG - chr7.1:35115716-35115735 MS.gene001108:CDS 35.0%
GAAGATGAAGTTTGTCAAAG+GGG + chr7.1:35116540-35116559 None:intergenic 35.0%
GATTCCCAAATATGCTCAAA+CGG + chr7.1:35115841-35115860 None:intergenic 35.0%
GCACTTCATCTGTGAAAAAT+GGG - chr7.1:35115790-35115809 MS.gene001108:CDS 35.0%
GCTTCTTAACATTACCTCTA+GGG - chr7.1:35115561-35115580 MS.gene001108:intron 35.0%
TAGATGTGAAATAGCAGTAG+AGG + chr7.1:35117170-35117189 None:intergenic 35.0%
TATGCAACACTCCTCATAAT+GGG + chr7.1:35116748-35116767 None:intergenic 35.0%
! CAGAATGTGAGTTTAGAACA+CGG - chr7.1:35115909-35115928 MS.gene001108:CDS 35.0%
! TTTAGAACACGGCTTTGTAA+AGG - chr7.1:35115920-35115939 MS.gene001108:CDS 35.0%
!! GAGATTTTGTTTGTTGAAGG+AGG - chr7.1:35116683-35116702 MS.gene001108:intron 35.0%
!! GGAGAGATTTTGTTTGTTGA+AGG - chr7.1:35116680-35116699 MS.gene001108:intron 35.0%
!!! CCTATTTTGGGATTCTACTA+CGG + chr7.1:35116183-35116202 None:intergenic 35.0%
!!! CTGGATTTTAGGATTCAAGT+TGG + chr7.1:35116124-35116143 None:intergenic 35.0%
AAATGGTTCAAACGTTCCTC+TGG - chr7.1:35117189-35117208 MS.gene001108:CDS 40.0%
AGAGCCGTTTGAGCATATTT+GGG - chr7.1:35115834-35115853 MS.gene001108:CDS 40.0%
AGATCAAATTGCGCTGCAAT+GGG + chr7.1:35116887-35116906 None:intergenic 40.0%
ATACATGGTTACAGACGACT+TGG - chr7.1:35117126-35117145 MS.gene001108:CDS 40.0%
ATTTGTCAAAGCAGACGTTG+AGG + chr7.1:35117383-35117402 None:intergenic 40.0%
CCGTAGTAGAATCCCAAAAT+AGG - chr7.1:35116180-35116199 MS.gene001108:intron 40.0%
CTACGGATTTGAGTATCTGA+AGG + chr7.1:35116166-35116185 None:intergenic 40.0%
CTATGCTCACATACCTGTAA+AGG - chr7.1:35115686-35115705 MS.gene001108:CDS 40.0%
CTTAAATGTTGGCGCTATTG+TGG - chr7.1:35116014-35116033 MS.gene001108:intron 40.0%
GAAATCGCAACCAAAATCGA+AGG + chr7.1:35116383-35116402 None:intergenic 40.0%
GAGGAAAGGATCGTTAGTAT+TGG - chr7.1:35117220-35117239 MS.gene001108:CDS 40.0%
TAAGGTCCCATAGAGTTTCT+AGG + chr7.1:35115725-35115744 None:intergenic 40.0%
TCAACGTCTGCTTTGACAAA+TGG - chr7.1:35117382-35117401 MS.gene001108:CDS 40.0%
TCAGAGTCTCAGCATTCTTA+AGG - chr7.1:35117348-35117367 MS.gene001108:CDS 40.0%
TGAAGAAAGTCGCAAAATCC+TGG + chr7.1:35116143-35116162 None:intergenic 40.0%
TTTCTCACCTTCCCATTATG+AGG - chr7.1:35116734-35116753 MS.gene001108:intron 40.0%
! CGTGTTCTAAACTCACATTC+TGG + chr7.1:35115911-35115930 None:intergenic 40.0%
! GGAATCAAAAGTGCAGTTGT+GGG - chr7.1:35115855-35115874 MS.gene001108:CDS 40.0%
! GTCGCAAAATCCTGGATTTT+AGG + chr7.1:35116135-35116154 None:intergenic 40.0%
! GTTCTAAACTCACATTCTGG+TGG + chr7.1:35115908-35115927 None:intergenic 40.0%
! TTTTGCAGGTAAGTTGTCCT+TGG - chr7.1:35116505-35116524 MS.gene001108:intron 40.0%
!! GATCGTTAGTATTGGTGTGA+AGG - chr7.1:35117228-35117247 MS.gene001108:CDS 40.0%
AAAGTTCTGTATGCTGGTGC+AGG - chr7.1:35115512-35115531 MS.gene001108:intron 45.0%
AAGTTCTGTATGCTGGTGCA+GGG - chr7.1:35115513-35115532 MS.gene001108:intron 45.0%
AATGTGTGTGCGCTTGAACT+TGG - chr7.1:35117039-35117058 MS.gene001108:CDS 45.0%
AGCATCAGCTCACTGTATCA+AGG - chr7.1:35115638-35115657 MS.gene001108:CDS 45.0%
AGTCTTGCAATAGTCCCTAG+AGG + chr7.1:35115578-35115597 None:intergenic 45.0%
ATAGACAGGTAAGGTAGCTG+CGG + chr7.1:35116933-35116952 None:intergenic 45.0%
ATAGCAGTAGAGGACGACAT+TGG + chr7.1:35117160-35117179 None:intergenic 45.0%
CTAAACTCACATTCTGGTGG+TGG + chr7.1:35115905-35115924 None:intergenic 45.0%
CTTAATGTCACAGGGACTCA+AGG - chr7.1:35116844-35116863 MS.gene001108:intron 45.0%
GAGAGCCGTTTGAGCATATT+TGG - chr7.1:35115833-35115852 MS.gene001108:CDS 45.0%
GAGATCAAATTGCGCTGCAA+TGG + chr7.1:35116888-35116907 None:intergenic 45.0%
GTGCAGTTGTGGGAATGTAA+TGG - chr7.1:35115865-35115884 MS.gene001108:CDS 45.0%
! AAACGTTCCTCTGGTTGATG+TGG - chr7.1:35117198-35117217 MS.gene001108:CDS 45.0%
! AGGTGTCATCTGAAGAGGAT+AGG - chr7.1:35116621-35116640 MS.gene001108:intron 45.0%
! CAACACTCCTCATAATGGGA+AGG + chr7.1:35116744-35116763 None:intergenic 45.0%
! GGGAATCAAAAGTGCAGTTG+TGG - chr7.1:35115854-35115873 MS.gene001108:CDS 45.0%
!! CGTTAGTATTGGTGTGAAGG+AGG - chr7.1:35117231-35117250 MS.gene001108:CDS 45.0%
!! TCACAGATGAAGTGCTGCAT+GGG + chr7.1:35115785-35115804 None:intergenic 45.0%
!! TTCACAGATGAAGTGCTGCA+TGG + chr7.1:35115786-35115805 None:intergenic 45.0%
AGGTAAGGTAGCTGCGGAAA+TGG + chr7.1:35116927-35116946 None:intergenic 50.0%
CAGCTCACTGTATCAAGGTG+TGG - chr7.1:35115643-35115662 MS.gene001108:CDS 50.0%
CTTTCCTCCACATCAACCAG+AGG + chr7.1:35117208-35117227 None:intergenic 50.0%
GGTAAGGTAGCTGCGGAAAT+GGG + chr7.1:35116926-35116945 None:intergenic 50.0%
TCAAATTGCGCTGCAATGGG+AGG + chr7.1:35116884-35116903 None:intergenic 50.0%
! CTCTGGTTGATGTGGAGGAA+AGG - chr7.1:35117206-35117225 MS.gene001108:CDS 50.0%
!! CAAAGGGGTCTTTGAGACCA+AGG + chr7.1:35116525-35116544 None:intergenic 50.0%
TCTGTATGCTGGTGCAGGGA+AGG - chr7.1:35115517-35115536 MS.gene001108:intron 55.0%
! CGTTCCTCTGGTTGATGTGG+AGG - chr7.1:35117201-35117220 MS.gene001108:CDS 55.0%
!! CGGAGAGGTGTCATCTGAAG+AGG - chr7.1:35116616-35116635 MS.gene001108:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35115434 35117447 35115434 ID=MS.gene001108
chr7.1 mRNA 35115434 35117447 35115434 ID=MS.gene001108.t1;Parent=MS.gene001108
chr7.1 exon 35116967 35117447 35116967 ID=MS.gene001108.t1.exon1;Parent=MS.gene001108.t1
chr7.1 CDS 35116967 35117447 35116967 ID=cds.MS.gene001108.t1;Parent=MS.gene001108.t1
chr7.1 exon 35116223 35116368 35116223 ID=MS.gene001108.t1.exon2;Parent=MS.gene001108.t1
chr7.1 CDS 35116223 35116368 35116223 ID=cds.MS.gene001108.t1;Parent=MS.gene001108.t1
chr7.1 exon 35115629 35116024 35115629 ID=MS.gene001108.t1.exon3;Parent=MS.gene001108.t1
chr7.1 CDS 35115629 35116024 35115629 ID=cds.MS.gene001108.t1;Parent=MS.gene001108.t1
chr7.1 exon 35115434 35115529 35115434 ID=MS.gene001108.t1.exon4;Parent=MS.gene001108.t1
chr7.1 CDS 35115434 35115529 35115434 ID=cds.MS.gene001108.t1;Parent=MS.gene001108.t1
Gene Sequence

>MS.gene001108

ATGGCTGACAGTGCTACTAAATCTGTTGAACAAGTTGACAAAATTACCTTGAAAGTTATGGTGGATAAAGAAAAGAACAAAGTTCTGTATGCTGGTGCAGGGAAGGATTTTTATGATGTTCTTTTGAGCTTCTTAACATTACCTCTAGGGACTATTGCAAGACTTGTATCCAAAGAGTCAAATATTGAAACGGTGAGATTTGGCAGCATCAGCTCACTGTATCAAGGTGTGGCAGATCTTGATCAACAATATCTATGCTCACATACCTGTAAAGGAATGCTACTCAATCCTAGAAACTCTATGGGACCTTATTGCAAGAAAATGAAGCTGAATATTGACGACACAAAACCCATGCAGCACTTCATCTGTGAAAAATGGGAATTTATTAGAAAGAAAAGTGAGAGCCGTTTGAGCATATTTGGGAATCAAAAGTGCAGTTGTGGGAATGTAATGGACACTGTATTATCTCCACCACCAGAATGTGAGTTTAGAACACGGCTTTGTAAAGGAAACTGCTACATTTATCATTTCAGATGATCTTTCTATGATGCCTAATGTTTTTGGAAAAGTTGTGCATCTACTTAAATGTTGGCGCTATTGTGGAAGAAACCGTTGATATTATCAAGATAGAGGCATGTTTTTAGATTCTATGACATTTGTGTTGTTGATCATATTGTTGTCAAAATTCCAACTTGAATCCTAAAATCCAGGATTTTGCGACTTTCTTCACCTTCAGATACTCAAATCCGTAGTAGAATCCCAAAATAGGTAAAATCTATCGATTTTGATTGCAATTTTATGATTTCTTATAAACTAAGTCATTTATGAATATATACCATTTATAACATATATTTAGTATTATTACTTTTTTTGGTAAAATCCATCAATCTTGATTGCGATTTTACCGATTTCTTATATCGATTCTACAAAAGTAGTTGAGTAAAATCCTTCGATTTTGGTTGCGATTTCACGATTATCGATTTTTTTCTTCTCTTTCGACCTGAAGCAAAATTTCGATTTTAACAACCTTTGTTGATCAACTTTTCTCATTAATTATTTCTATTTTTTGAATTTTGCAGGTAAGTTGTCCTTGGTCTCAAAGACCCCTTTGACAAACTTCATCTTCAAGAAGAAACCTTTTCGTGATGAATTTGACAAGAGAGAGCAATACAAGTATAAGAACGGAGAGGTGTCATCTGAAGAGGATAGGCAGATGTTTGTGAAAGTATTGCGAATAAAATCAACTGGAGAGATTTTGTTTGTTGAAGGAGGTGTAAATTTTATTGACTTTCTTTTCAGTTTTCTCACCTTCCCATTATGAGGAGTGTTGCATATGCTTCAAGCATTCTCTTCTTTAAGCTGCATTGATAATTTGTACAAAAGTGTGGCTGAGTTGAATTCCGATACATACTTAATGTCACAGGGACTCAAGGACAAACTAACTAAGCCTCCCATTGCAGCGCAATTTGATCTCAGCAATCAGATATTACCCATTTCCGCAGCTACCTTACCTGTCTATTATTGTCGTAATTACTTTAATGGATGCTATAATCGTACTCTTACTACTACATACACACACTGTGATTATTTTAATATTTATGGTGAAATGTGTGTGCGCTTGAACTTGGTTGATCCCAAGTTCTCTACATCAAAATCATCAAGTTGTAGAGAGTTTGCAAAAGGAACATCAATATACATGGTTACAGACGACTTGGTTGTGACTCCAATGTCGTCCTCTACTGCTATTTCACATCTAAATGGTTCAAACGTTCCTCTGGTTGATGTGGAGGAAAGGATCGTTAGTATTGGTGTGAAGGAGGTAAGCGTTATTTCGTAAGACTTTTCACATTGTTATTGATCGCAATTAATTTTCGTTTGCATATGTTAATACAATTATTTGTTTGTTTACATGTTTCAGAGTCTCAGCATTCTTAAGGCTTCATTGACCTCAACGTCTGCTTTGACAAATGGTCTCAACCAATTCTTAACAACAACCATTAAGGAAGGGAAATGA
Protein sequence

>MS.gene001108.t1

MADSATKSVEQVDKITLKVMVDKEKNKVLYAGAGKDFYDVLLSFLTLPLGTIARLVSKESNIETVRFGSISSLYQGVADLDQQYLCSHTCKGMLLNPRNSMGPYCKKMKLNIDDTKPMQHFICEKWEFIRKKSESRLSIFGNQKCSCGNVMDTVLSPPPECKLSLVSKTPLTNFIFKKKPFRDEFDKREQYKYKNGEVSSEEDRQMFVKGLKDKLTKPPIAAQFDLSNQILPISAATLPVYYCRNYFNGCYNRTLTTTYTHCDYFNIYGEMCVRLNLVDPKFSTSKSSSCREFAKGTSIYMVTDDLVVTPMSSSTAISHLNGSNVPLVDVEERIVSIGVKESLSILKASLTSTSALTNGLNQFLTTTIKEGK