AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84625

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84625.t1 MTR_7g066480 92.791 430 30 1 1 429 1 430 0.0 801
MS.gene84625.t1 MTR_7g066490 82.870 432 55 4 1 429 1 416 0.0 695
MS.gene84625.t1 MTR_7g066260 43.077 455 206 11 16 422 15 464 3.96e-97 300
MS.gene84625.t1 MTR_7g066340 41.593 452 211 11 16 422 12 455 1.06e-95 295
MS.gene84625.t1 MTR_7g066350 42.058 447 205 9 16 417 9 446 2.03e-92 286
MS.gene84625.t1 MTR_7g062300 37.021 470 217 8 16 417 12 470 1.07e-89 280
MS.gene84625.t1 MTR_7g066410 46.132 349 150 7 16 331 10 353 5.66e-89 280
MS.gene84625.t1 MTR_7g066410 62.651 83 31 0 339 421 431 513 1.19e-22 100
MS.gene84625.t1 MTR_7g066410 26.609 233 142 7 16 229 284 506 3.00e-12 68.6
MS.gene84625.t1 MTR_7g066290 41.609 435 220 11 11 421 10 434 2.14e-88 275
MS.gene84625.t1 MTR_7g062280 37.882 491 206 12 16 421 10 486 6.41e-88 276
MS.gene84625.t1 MTR_7g066430 47.059 340 162 5 14 341 2 335 6.50e-88 276
MS.gene84625.t1 MTR_7g066430 53.125 96 43 1 325 420 392 485 5.49e-21 95.5
MS.gene84625.t1 MTR_7g066360 41.964 448 207 11 17 422 15 451 2.96e-87 274
MS.gene84625.t1 MTR_7g012680 39.651 459 200 8 16 422 14 447 1.34e-86 271
MS.gene84625.t1 MTR_3g007740 40.481 457 209 11 11 421 4 443 3.69e-86 270
MS.gene84625.t1 MTR_7g063880 37.838 481 208 10 16 427 11 469 1.22e-82 261
MS.gene84625.t1 MTR_7g063660 36.842 475 220 11 16 421 9 472 4.92e-81 258
MS.gene84625.t1 MTR_1g041315 37.868 441 219 8 16 404 14 451 7.73e-81 258
MS.gene84625.t1 MTR_7g063920 37.229 462 191 9 16 420 11 430 1.50e-79 253
MS.gene84625.t1 MTR_7g063670 37.500 472 219 10 4 421 3 452 1.22e-78 251
MS.gene84625.t1 MTR_7g066400 37.778 450 207 10 14 416 10 433 2.92e-76 244
MS.gene84625.t1 MTR_7g063830 39.341 455 216 13 11 421 1 439 3.32e-76 244
MS.gene84625.t1 MTR_7g066570 44.136 324 162 4 17 332 15 327 8.38e-75 244
MS.gene84625.t1 MTR_7g066570 58.333 72 30 0 351 422 411 482 1.78e-16 82.0
MS.gene84625.t1 MTR_7g063900 42.229 341 180 5 12 344 5 336 2.20e-73 238
MS.gene84625.t1 MTR_7g058700 37.559 426 190 8 28 416 531 917 2.07e-72 244
MS.gene84625.t1 MTR_7g066310 36.199 442 184 11 16 422 7 385 2.54e-72 233
MS.gene84625.t1 MTR_7g058710 34.949 495 214 11 16 426 12 482 3.49e-72 235
MS.gene84625.t1 MTR_7g063890 42.655 354 174 8 12 350 21 360 1.12e-70 231
MS.gene84625.t1 MTR_7g063840 42.165 351 180 8 17 357 11 348 5.74e-69 226
MS.gene84625.t1 MTR_7g063820 43.385 325 164 9 17 332 11 324 2.03e-65 217
MS.gene84625.t1 MTR_1g014060 36.881 404 219 6 27 422 11 386 3.67e-63 209
MS.gene84625.t1 MTR_7g066580 41.768 328 148 10 22 341 1 293 1.96e-61 206
MS.gene84625.t1 MTR_7g066580 55.556 63 28 0 351 413 376 438 4.24e-13 71.2
MS.gene84625.t1 MTR_4g019310 34.073 496 229 13 19 426 11 496 1.74e-60 204
MS.gene84625.t1 MTR_4g019340 32.510 486 211 14 17 408 39 501 2.53e-46 167
MS.gene84625.t1 MTR_4g017410 30.879 489 247 15 14 421 7 485 2.69e-45 164
MS.gene84625.t1 MTR_4g017610 29.560 477 234 12 19 413 16 472 8.81e-45 162
MS.gene84625.t1 MTR_2g029400 33.962 318 140 6 16 332 14 262 1.01e-42 155
MS.gene84625.t1 MTR_2g029400 26.190 168 107 3 263 413 15 182 9.45e-12 66.6
MS.gene84625.t1 MTR_2g029400 53.226 62 29 0 348 409 343 404 3.28e-11 65.1
MS.gene84625.t1 MTR_3g065200 35.644 303 146 5 15 311 2 261 7.24e-40 149
MS.gene84625.t1 MTR_7g066280 30.166 421 172 14 95 422 1 392 8.26e-40 147
MS.gene84625.t1 MTR_4g017470 33.824 340 177 6 17 344 13 316 4.17e-39 147
MS.gene84625.t1 MTR_4g017830 34.783 368 188 15 17 353 13 359 1.39e-38 146
MS.gene84625.t1 MTR_4g017830 38.614 101 51 1 320 420 412 501 4.02e-11 65.1
MS.gene84625.t1 MTR_4g017440 31.967 366 193 9 14 344 12 356 6.27e-35 135
MS.gene84625.t1 MTR_7g063720 39.000 200 73 3 265 417 26 223 1.52e-33 126
MS.gene84625.t1 MTR_7g063720 28.261 230 140 10 6 229 10 220 2.80e-12 66.6
MS.gene84625.t1 MTR_7g062270 42.262 168 91 2 17 178 11 178 2.88e-33 129
MS.gene84625.t1 MTR_7g063690 32.967 273 120 8 17 289 13 222 2.20e-28 112
MS.gene84625.t1 MTR_4g017550 31.875 320 182 13 30 325 3 310 2.48e-27 114
MS.gene84625.t1 MTR_8g023240 29.874 318 190 10 17 323 38 333 3.42e-27 114
MS.gene84625.t1 MTR_7g066680 31.090 312 114 8 212 429 37 341 4.00e-26 108
MS.gene84625.t1 MTR_7g066390 47.619 126 60 2 303 423 1 125 1.42e-22 94.0
MS.gene84625.t1 MTR_8g445860 32.787 244 140 9 7 235 4 238 8.08e-22 94.4
MS.gene84625.t1 MTR_1g115440 31.646 237 135 9 16 234 11 238 6.63e-19 85.9
MS.gene84625.t1 MTR_4g019330 37.349 166 89 3 257 412 13 173 1.55e-16 77.8
MS.gene84625.t1 MTR_0150s0010 29.876 241 142 8 12 234 6 237 3.67e-16 78.2
MS.gene84625.t1 MTR_2g067310 37.255 153 63 4 27 179 58 177 9.00e-16 77.0
MS.gene84625.t1 MTR_1g115450 44.318 88 44 1 12 99 3 85 1.33e-13 68.2
MS.gene84625.t1 MTR_7g063850 34.459 148 75 5 186 332 5 131 2.50e-13 70.5
MS.gene84625.t1 MTR_7g063850 39.326 89 54 0 341 429 203 291 3.15e-12 67.4
MS.gene84625.t1 MTR_1g115455 27.984 243 142 7 12 235 5 233 6.20e-13 68.6
MS.gene84625.t1 MTR_0150s0030 41.379 87 45 2 14 99 6 87 3.38e-12 65.9
MS.gene84625.t1 MTR_4g019240 29.825 171 79 3 262 420 13 154 5.93e-12 64.7
MS.gene84625.t1 MTR_7g063760 43.056 72 40 1 356 426 2 73 7.53e-12 61.2
MS.gene84625.t1 MTR_8g445910 40.449 89 47 2 12 99 4 87 4.37e-11 63.5
MS.gene84625.t1 MTR_8g044880 40.449 89 47 2 12 99 4 87 6.14e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84625.t1 AT3G09140 32.525 495 248 12 14 425 7 498 3.13e-56 193
MS.gene84625.t1 AT3G09140 31.154 520 250 13 14 425 7 526 7.85e-54 187
MS.gene84625.t1 AT5G01130 31.304 460 249 11 16 426 9 450 5.81e-50 176
MS.gene84625.t1 AT5G01120 31.006 487 238 12 17 416 10 485 6.32e-50 177
MS.gene84625.t1 AT3G09110 33.438 317 199 4 18 327 11 322 1.62e-45 161
MS.gene84625.t1 AT5G01140 28.151 476 246 8 18 426 11 457 2.15e-45 164
MS.gene84625.t1 AT5G01150 28.898 481 254 13 18 421 11 480 2.52e-42 156
MS.gene84625.t1 AT3G09120 32.716 324 187 7 12 316 2 313 1.30e-40 147
MS.gene84625.t1 AT5G37320 30.642 483 249 17 15 421 8 480 6.33e-40 149
MS.gene84625.t1 AT5G43240 33.333 366 209 11 17 357 10 365 2.10e-37 142
MS.gene84625.t1 AT5G43240 33.333 366 209 11 17 357 10 365 2.10e-37 142
MS.gene84625.t1 AT5G43240 33.333 366 209 11 17 357 10 365 2.10e-37 142

Find 65 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTTTCTGTGAAAATTT+TGG 0.216022 7.3:-38679600 MS.gene84625:CDS
TATTGTTCCATCAAATTAAT+TGG 0.226939 7.3:+38679350 None:intergenic
TTGGATTTAAAATATCTTTC+AGG 0.240482 7.3:+38678267 None:intergenic
CAGTAGCAGCTTCGCTTCTT+AGG 0.241207 7.3:+38679245 None:intergenic
CTTAGACAATAAATCTGATT+TGG 0.246131 7.3:+38678248 None:intergenic
GAGAATTCCTCTCTCTGATT+TGG 0.271322 7.3:-38678103 MS.gene84625:CDS
ATTCAAGAGCATGGTTGATT+TGG 0.281674 7.3:-38678292 MS.gene84625:CDS
TGAGAAATTTGAGAATTATC+AGG 0.305949 7.3:+38679116 None:intergenic
TAAGAAAATTCTGTATGCTT+TGG 0.306163 7.3:-38678421 MS.gene84625:CDS
AAGAAAATTCTGTATGCTTT+GGG 0.312199 7.3:-38678420 MS.gene84625:CDS
AATGTATTGGATTTAGATTT+TGG 0.319002 7.3:-38678507 MS.gene84625:CDS
GGTTCGACCAATTAATTTGA+TGG 0.328737 7.3:-38679357 MS.gene84625:CDS
CAAGAGTCCTTCAACATATA+TGG 0.334427 7.3:-38678190 MS.gene84625:CDS
TTGTCATTGGTTGCAAGAAA+TGG 0.341523 7.3:+38677905 None:intergenic
GGAGTTGAGAACATGTTAAA+TGG 0.344732 7.3:-38678345 MS.gene84625:CDS
GTATCTTGGATGTGAAAATA+TGG 0.345574 7.3:-38679072 MS.gene84625:CDS
TCCAATACATTGACAGGTCT+TGG 0.352633 7.3:+38678519 None:intergenic
GTTTCTCTTCTGAAGTATCT+TGG 0.357240 7.3:-38679086 MS.gene84625:CDS
AGTTTCTTAACTTTGCCATT+AGG 0.370562 7.3:-38679512 MS.gene84625:CDS
AAAATTCTCTTTGTCAAGGT+TGG 0.380539 7.3:+38679406 None:intergenic
ATTTAGTGAAGTGCTCCTTA+TGG 0.380971 7.3:-38678596 MS.gene84625:CDS
GCATGGGAGCACACCTTGTA+AGG 0.388782 7.3:-38678482 MS.gene84625:CDS
CTTCTATTGTTCCCCTTACA+AGG 0.392190 7.3:+38678469 None:intergenic
GACAAGAATACGTCTGTTAG+AGG 0.400508 7.3:+38678564 None:intergenic
TCATCATCAGCTCTAACTAT+TGG 0.402695 7.3:-38677935 MS.gene84625:CDS
ACCAAGACCTGTCAATGTAT+TGG 0.433905 7.3:-38678520 MS.gene84625:CDS
CAACAAAGTCCTTCCCTGCT+TGG 0.437327 7.3:+38679546 None:intergenic
CACAGAAACTTCAGTGGATG+GGG 0.462605 7.3:+38679610 None:intergenic
GAAGAAAGAATGATTAGCAT+TGG 0.467741 7.3:-38678081 MS.gene84625:CDS
TCTGTTACCATATATGTTGA+AGG 0.472437 7.3:+38678183 None:intergenic
TCTAAATCCAATACATTGAC+AGG 0.482402 7.3:+38678513 None:intergenic
TCAGCTCTAACTATTGGTCT+TGG 0.483988 7.3:-38677929 MS.gene84625:CDS
ACCTAAAATTCTCTTTGTCA+AGG 0.486256 7.3:+38679402 None:intergenic
TTCACAGAAACTTCAGTGGA+TGG 0.488867 7.3:+38679608 None:intergenic
GGAACAAAACCATTCTTAGC+AGG 0.489021 7.3:+38679182 None:intergenic
TAGAGGTGTCGCCGACCATA+AGG 0.500207 7.3:+38678581 None:intergenic
AGTCTTGCAATAGTGCCTAA+TGG 0.507578 7.3:+38679497 None:intergenic
ATAGATTATCTATGTTGTCT+AGG 0.508322 7.3:+38678313 None:intergenic
AAAGGAAATCGCATCGGTAG+AGG 0.509174 7.3:+38678137 None:intergenic
TCACAGAAACTTCAGTGGAT+GGG 0.511080 7.3:+38679609 None:intergenic
AAGGGGAACAATAGAAGTAA+AGG 0.522163 7.3:-38678463 MS.gene84625:CDS
AACATGTTAAATGGAAACTC+TGG 0.523592 7.3:-38678336 MS.gene84625:CDS
ATAAGAAAAGTTGCGGTCAC+CGG 0.523846 7.3:+38679161 None:intergenic
TCTGTATGCTTTGGGTGAAG+AGG 0.540891 7.3:-38678412 MS.gene84625:CDS
GACTGTTGATATCACTCGTA+AGG 0.541024 7.3:-38679033 MS.gene84625:CDS
CTTTCTTCCAAATCAGAGAG+AGG 0.543946 7.3:+38678096 None:intergenic
AACATGAAGAATGTTAGTGT+TGG 0.544227 7.3:-38679458 MS.gene84625:CDS
TGTTCTCAACTCCTCCCAAA+GGG 0.549781 7.3:+38678355 None:intergenic
GATTAGCATTGGCAATAAAG+AGG 0.572173 7.3:-38678070 MS.gene84625:intron
CATGGGAGCACACCTTGTAA+GGG 0.584012 7.3:-38678481 MS.gene84625:CDS
ATCTGAGATAAGAAAAGTTG+CGG 0.589869 7.3:+38679154 None:intergenic
AGATAATCTATTCAAGAGCA+TGG 0.593603 7.3:-38678301 MS.gene84625:CDS
ATCGCATCGGTAGAGGAACC+TGG 0.597504 7.3:+38678144 None:intergenic
TTTATTTGTCCAAGCAGGGA+AGG 0.601075 7.3:-38679555 MS.gene84625:CDS
AGTGAAGTGCTCCTTATGGT+CGG 0.606083 7.3:-38678592 MS.gene84625:CDS
AACAATAGAAGTAAAGGCAA+TGG 0.611013 7.3:-38678457 MS.gene84625:CDS
GTTACGTAGGAAAGTAGCCA+TGG 0.616515 7.3:+38679646 None:intergenic
ATGTTCTCAACTCCTCCCAA+AGG 0.619718 7.3:+38678354 None:intergenic
GAAAAGAACCTATTTATGTG+AGG 0.621159 7.3:-38679213 MS.gene84625:CDS
AGTCAGAAAGGAAATCGCAT+CGG 0.623415 7.3:+38678131 None:intergenic
ATGGGAGCACACCTTGTAAG+GGG 0.628802 7.3:-38678480 MS.gene84625:CDS
TTGATGACACAGAAAAGTTG+AGG 0.631875 7.3:-38679304 MS.gene84625:CDS
CAAAGCAATTGAAGTTACGT+AGG 0.644804 7.3:+38679633 None:intergenic
TGTTGATATCACTCGTAAGG+AGG 0.661482 7.3:-38679030 MS.gene84625:intron
GATGACTTAGTCATCACACC+AGG 0.706265 7.3:-38678162 MS.gene84625:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTAATTTTTTTTG+TGG - chr7.3:38679537-38679556 MS.gene84625:CDS 10.0%
!!! AAATTTTGTGATTGTATTTA+TGG + chr7.3:38678841-38678860 None:intergenic 15.0%
!!! AGATTTTGAAAAAGAATTAT+TGG - chr7.3:38678155-38678174 MS.gene84625:CDS 15.0%
!!! ATACATTTTAGAATTTACAA+AGG + chr7.3:38678885-38678904 None:intergenic 15.0%
!! GTTATAGACATATAACAATT+TGG - chr7.3:38678712-38678731 MS.gene84625:intron 20.0%
!! TATTGTTCCATCAAATTAAT+TGG + chr7.3:38678186-38678205 None:intergenic 20.0%
!!! AATGTATTGGATTTAGATTT+TGG - chr7.3:38679026-38679045 MS.gene84625:intron 20.0%
!!! TTGGATTTAAAATATCTTTC+AGG + chr7.3:38679269-38679288 None:intergenic 20.0%
!!! TTTTTTAACCTCACATAAAT+AGG + chr7.3:38678331-38678350 None:intergenic 20.0%
! AAAAAGAAGTTAATTCCCAA+AGG - chr7.3:38678637-38678656 MS.gene84625:intron 25.0%
! AAGAAAATTCTGTATGCTTT+GGG - chr7.3:38679113-38679132 MS.gene84625:CDS 25.0%
! ATAGATTATCTATGTTGTCT+AGG + chr7.3:38679223-38679242 None:intergenic 25.0%
! CATTTATATTGTAATCTCCT+AGG + chr7.3:38678691-38678710 None:intergenic 25.0%
! CTTAGACAATAAATCTGATT+TGG + chr7.3:38679288-38679307 None:intergenic 25.0%
! TAAGAAAATTCTGTATGCTT+TGG - chr7.3:38679112-38679131 MS.gene84625:CDS 25.0%
! TGAGAAATTTGAGAATTATC+AGG + chr7.3:38678420-38678439 None:intergenic 25.0%
!! AGCATACAGAATTTTCTTAT+TGG + chr7.3:38679111-38679130 None:intergenic 25.0%
!! CAAGTAAAATCCAATTTTGA+TGG - chr7.3:38679308-38679327 MS.gene84625:CDS 25.0%
!! TGAAGTTTCTGTGAAAATTT+TGG - chr7.3:38677933-38677952 MS.gene84625:CDS 25.0%
!! TGGGAATTAACTTCTTTTTA+CGG + chr7.3:38678636-38678655 None:intergenic 25.0%
!!! AAATTTTTTGACATTCCCTT+TGG - chr7.3:38679163-38679182 MS.gene84625:CDS 25.0%
!!! AATTCTCATTTTAGTCAGAA+AGG + chr7.3:38679417-38679436 None:intergenic 25.0%
!!! AATTTTTTGACATTCCCTTT+GGG - chr7.3:38679164-38679183 MS.gene84625:CDS 25.0%
!!! GATTTGTTTTCCATCAAAAT+TGG + chr7.3:38679321-38679340 None:intergenic 25.0%
!!! GTTTAAGATTTTCTTGTCAT+TGG + chr7.3:38679644-38679663 None:intergenic 25.0%
AAAATTCTCTTTGTCAAGGT+TGG + chr7.3:38678130-38678149 None:intergenic 30.0%
AACAATAGAAGTAAAGGCAA+TGG - chr7.3:38679076-38679095 MS.gene84625:CDS 30.0%
AACATGAAGAATGTTAGTGT+TGG - chr7.3:38678075-38678094 MS.gene84625:CDS 30.0%
AACATGTTAAATGGAAACTC+TGG - chr7.3:38679197-38679216 MS.gene84625:CDS 30.0%
ACAATTCCTATGATTTCCTT+TGG + chr7.3:38678656-38678675 None:intergenic 30.0%
ACCTAAAATTCTCTTTGTCA+AGG + chr7.3:38678134-38678153 None:intergenic 30.0%
AGATAATCTATTCAAGAGCA+TGG - chr7.3:38679232-38679251 MS.gene84625:CDS 30.0%
AGTTTCTTAACTTTGCCATT+AGG - chr7.3:38678021-38678040 MS.gene84625:intron 30.0%
CAATTCCTATGATTTCCTTT+GGG + chr7.3:38678655-38678674 None:intergenic 30.0%
CATAAGAAACATGAACTTGT+CGG + chr7.3:38679522-38679541 None:intergenic 30.0%
GAAAAGAACCTATTTATGTG+AGG - chr7.3:38678320-38678339 MS.gene84625:CDS 30.0%
GAAGAAAGAATGATTAGCAT+TGG - chr7.3:38679452-38679471 MS.gene84625:CDS 30.0%
GTATCTTGGATGTGAAAATA+TGG - chr7.3:38678461-38678480 MS.gene84625:CDS 30.0%
GTTAAAAAACCTGCTAAGAA+TGG - chr7.3:38678342-38678361 MS.gene84625:CDS 30.0%
TAATTCCCAAAGGAAATCAT+AGG - chr7.3:38678647-38678666 MS.gene84625:intron 30.0%
TCTAAATCCAATACATTGAC+AGG + chr7.3:38679023-38679042 None:intergenic 30.0%
TCTGTTACCATATATGTTGA+AGG + chr7.3:38679353-38679372 None:intergenic 30.0%
! AATTTTCACAGAAACTTCAG+TGG + chr7.3:38677932-38677951 None:intergenic 30.0%
! ACCTTGACAAAGAGAATTTT+AGG - chr7.3:38678130-38678149 MS.gene84625:CDS 30.0%
! ATCTGAGATAAGAAAAGTTG+CGG + chr7.3:38678382-38678401 None:intergenic 30.0%
!! AAGTTGAGGTCTTTTAATTG+TGG - chr7.3:38678243-38678262 MS.gene84625:CDS 30.0%
!! GATTTAGATTTTGGTAGCAT+GGG - chr7.3:38679035-38679054 MS.gene84625:CDS 30.0%
!!! AAAGTTTTATTTGTCCAAGC+AGG - chr7.3:38677973-38677992 MS.gene84625:intron 30.0%
!!! AAGTTTTATTTGTCCAAGCA+GGG - chr7.3:38677974-38677993 MS.gene84625:intron 30.0%
!!! AATTTTTTTTGTGGAACTGC+AGG - chr7.3:38679546-38679565 MS.gene84625:CDS 30.0%
AAGGGGAACAATAGAAGTAA+AGG - chr7.3:38679070-38679089 MS.gene84625:CDS 35.0%
CAAAGCAATTGAAGTTACGT+AGG + chr7.3:38677903-38677922 None:intergenic 35.0%
CAAGAGTCCTTCAACATATA+TGG - chr7.3:38679343-38679362 MS.gene84625:CDS 35.0%
GGAGTTGAGAACATGTTAAA+TGG - chr7.3:38679188-38679207 MS.gene84625:CDS 35.0%
! ATTCAAGAGCATGGTTGATT+TGG - chr7.3:38679241-38679260 MS.gene84625:CDS 35.0%
! ATTTAGTGAAGTGCTCCTTA+TGG - chr7.3:38678937-38678956 MS.gene84625:intron 35.0%
! GGTTCGACCAATTAATTTGA+TGG - chr7.3:38678176-38678195 MS.gene84625:CDS 35.0%
! TCATCATCAGCTCTAACTAT+TGG - chr7.3:38679598-38679617 MS.gene84625:CDS 35.0%
! TGTAATCTCCTAGGATTAGT+AGG + chr7.3:38678682-38678701 None:intergenic 35.0%
! TTGATGACACAGAAAAGTTG+AGG - chr7.3:38678229-38678248 MS.gene84625:CDS 35.0%
! TTGTCATTGGTTGCAAGAAA+TGG + chr7.3:38679631-38679650 None:intergenic 35.0%
!! GATTAGCATTGGCAATAAAG+AGG - chr7.3:38679463-38679482 MS.gene84625:CDS 35.0%
!! GGATTTAGATTTTGGTAGCA+TGG - chr7.3:38679034-38679053 MS.gene84625:CDS 35.0%
!! GTTTCTCTTCTGAAGTATCT+TGG - chr7.3:38678447-38678466 MS.gene84625:CDS 35.0%
!!! TGCTAAGAATGGTTTTGTTC+CGG - chr7.3:38678353-38678372 MS.gene84625:CDS 35.0%
ACCAAGACCTGTCAATGTAT+TGG - chr7.3:38679013-38679032 MS.gene84625:intron 40.0%
ACTAGTATGCCTGAACTTCT+TGG + chr7.3:38678810-38678829 None:intergenic 40.0%
AGTCAGAAAGGAAATCGCAT+CGG + chr7.3:38679405-38679424 None:intergenic 40.0%
AGTCTTGCAATAGTGCCTAA+TGG + chr7.3:38678039-38678058 None:intergenic 40.0%
ATAAGAAAAGTTGCGGTCAC+CGG + chr7.3:38678375-38678394 None:intergenic 40.0%
ATTGTCCACCTACTAATCCT+AGG - chr7.3:38678671-38678690 MS.gene84625:intron 40.0%
CATGATTTCCCAAGAAGTTC+AGG - chr7.3:38678798-38678817 MS.gene84625:intron 40.0%
CTAGTATGCCTGAACTTCTT+GGG + chr7.3:38678809-38678828 None:intergenic 40.0%
CTTCTATTGTTCCCCTTACA+AGG + chr7.3:38679067-38679086 None:intergenic 40.0%
CTTTCTTCCAAATCAGAGAG+AGG + chr7.3:38679440-38679459 None:intergenic 40.0%
GACAAGAATACGTCTGTTAG+AGG + chr7.3:38678972-38678991 None:intergenic 40.0%
GACTGTTGATATCACTCGTA+AGG - chr7.3:38678500-38678519 MS.gene84625:CDS 40.0%
GAGAATTCCTCTCTCTGATT+TGG - chr7.3:38679430-38679449 MS.gene84625:CDS 40.0%
GGAACAAAACCATTCTTAGC+AGG + chr7.3:38678354-38678373 None:intergenic 40.0%
TCACAGAAACTTCAGTGGAT+GGG + chr7.3:38677927-38677946 None:intergenic 40.0%
TCCAATACATTGACAGGTCT+TGG + chr7.3:38679017-38679036 None:intergenic 40.0%
TGTTGATATCACTCGTAAGG+AGG - chr7.3:38678503-38678522 MS.gene84625:CDS 40.0%
TTCACAGAAACTTCAGTGGA+TGG + chr7.3:38677928-38677947 None:intergenic 40.0%
TTTATTTGTCCAAGCAGGGA+AGG - chr7.3:38677978-38677997 MS.gene84625:intron 40.0%
! AATCTCCTAGGATTAGTAGG+TGG + chr7.3:38678679-38678698 None:intergenic 40.0%
! TCAGCTCTAACTATTGGTCT+TGG - chr7.3:38679604-38679623 MS.gene84625:CDS 40.0%
! TTTTTGACATTCCCTTTGGG+AGG - chr7.3:38679167-38679186 MS.gene84625:CDS 40.0%
ATGTTCTCAACTCCTCCCAA+AGG + chr7.3:38679182-38679201 None:intergenic 45.0%
CACAGAAACTTCAGTGGATG+GGG + chr7.3:38677926-38677945 None:intergenic 45.0%
GATGACTTAGTCATCACACC+AGG - chr7.3:38679371-38679390 MS.gene84625:CDS 45.0%
TGTTCTCAACTCCTCCCAAA+GGG + chr7.3:38679181-38679200 None:intergenic 45.0%
! AAAGGAAATCGCATCGGTAG+AGG + chr7.3:38679399-38679418 None:intergenic 45.0%
! AGTGAAGTGCTCCTTATGGT+CGG - chr7.3:38678941-38678960 MS.gene84625:intron 45.0%
! TCTGTATGCTTTGGGTGAAG+AGG - chr7.3:38679121-38679140 MS.gene84625:CDS 45.0%
CAACAAAGTCCTTCCCTGCT+TGG + chr7.3:38677990-38678009 None:intergenic 50.0%
CAGTAGCAGCTTCGCTTCTT+AGG + chr7.3:38678291-38678310 None:intergenic 50.0%
! ATGGGAGCACACCTTGTAAG+GGG - chr7.3:38679053-38679072 MS.gene84625:CDS 50.0%
! CATGGGAGCACACCTTGTAA+GGG - chr7.3:38679052-38679071 MS.gene84625:CDS 50.0%
! ATCGCATCGGTAGAGGAACC+TGG + chr7.3:38679392-38679411 None:intergenic 55.0%
! GCATGGGAGCACACCTTGTA+AGG - chr7.3:38679051-38679070 MS.gene84625:CDS 55.0%
!! TAGAGGTGTCGCCGACCATA+AGG + chr7.3:38678955-38678974 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38677889 38679666 38677889 ID=MS.gene84625
chr7.3 mRNA 38677889 38679666 38677889 ID=MS.gene84625.t1;Parent=MS.gene84625
chr7.3 exon 38679031 38679666 38679031 ID=MS.gene84625.t1.exon1;Parent=MS.gene84625.t1
chr7.3 CDS 38679031 38679666 38679031 ID=cds.MS.gene84625.t1;Parent=MS.gene84625.t1
chr7.3 exon 38678071 38678625 38678071 ID=MS.gene84625.t1.exon2;Parent=MS.gene84625.t1
chr7.3 CDS 38678071 38678625 38678071 ID=cds.MS.gene84625.t1;Parent=MS.gene84625.t1
chr7.3 exon 38677889 38677987 38677889 ID=MS.gene84625.t1.exon3;Parent=MS.gene84625.t1
chr7.3 CDS 38677889 38677987 38677889 ID=cds.MS.gene84625.t1;Parent=MS.gene84625.t1
Gene Sequence

>MS.gene84625

ATGGCTACTTTCCTACGTAACTTCAATTGCTTTGCCCCATCCACTGAAGTTTCTGTGAAAATTTTGGTAGATGAAGTCAGAAACAAAGTTTTATTTGTCCAAGCAGGGAAGGACTTTGTTGATGTGCTGCTAAGTTTCTTAACTTTGCCATTAGGCACTATTGCAAGACTTTTGAGTCAAGAATCTAACATGAAGAATGTTAGTGTTGGAAGCTTAAGCTTGTTATATCAAAGTGTTTCCAACCTTGACAAAGAGAATTTTAGGTCAGATTTTGAAAAAGAATTATTGGTTCGACCAATTAATTTGATGGAACAATATTGCAAGTATCTAAAACTCAACATTGATGACACAGAAAAGTTGAGGTCTTTTAATTGTGGCAAACAAAAGTGCAGTGATATACCTAAGAAGCGAAGCTGCTACTGCTGTGAAAAGAAAAGAACCTATTTATGTGAGGTTAAAAAACCTGCTAAGAATGGTTTTGTTCCGGTGACCGCAACTTTTCTTATCTCAGATGATTTGAATGTGAAGCCTGATAATTCTCAAATTTCTCAAAATAGTGTTTCTCTTCTGAAGTATCTTGGATGTGAAAATATGGATTCTATCAAGATAGTGACTGTTGATATCACTCGTAAGGAGGTATCTATCTCTTTTGAAAATTCTCAATACTCTTGTATAATTTATGTCTAATGTGATTTTCTTTGCTTTTAAATTTGCTAAAAAGACTTTATGAATATAGACGAAAAACCGTAAAAAGAAGTTAATTCCCAAAGGAAATCATAGGAATTGTCCACCTACTAATCCTAGGAGATTACAATATAAATGTGTTATAGACATATAACAATTTGGTAGAAATATGCTGTAATTTGTATCTACTTTCATGTTGCATATATTGAAAGTTATTGAATTTTACATGATTTCCCAAGAAGTTCAGGCATACTAGTACTATCATCCATAAATACAATCACAAAATTTTGTTCAAATTTATCTAAATTTCCTTTGTAAATTCTAAAATGTATAACATTGTACATTGCTTTATTGTAGATACTAGATTTAGTGAAGTGCTCCTTATGGTCGGCGACACCTCTAACAGACGTATTCTTGTCGAAGAAACTGTTTATTGAGAAACCAAGACCTGTCAATGTATTGGATTTAGATTTTGGTAGCATGGGAGCACACCTTGTAAGGGGAACAATAGAAGTAAAGGCAATGGTGAGAAAATCCAATAAGAAAATTCTGTATGCTTTGGGTGAAGAGGACTTTGCAGACTTGTTACTAAATTTTTTGACATTCCCTTTGGGAGGAGTTGAGAACATGTTAAATGGAAACTCTGGCCTAGACAACATAGATAATCTATTCAAGAGCATGGTTGATTTGGATCCTGAAAGATATTTTAAATCCAAATCAGATTTATTGTCTAAGCAAGTAAAATCCAATTTTGATGGAAAACAAATCATCAAGAGTCCTTCAACATATATGGTAACAGATGACTTAGTCATCACACCAGGTTCCTCTACCGATGCGATTTCCTTTCTGACTAAAATGAGAATTCCTCTCTCTGATTTGGAAGAAAGAATGATTAGCATTGGCAATAAAGAGGTAAATTGCTGTTGTCGATTTCATTTCTTTTATTCCGACAAGTTCATGTTTCTTATGTTTTAATTTTTTTTGTGGAACTGCAGGCTCATAGTCTTCTTAAAGCTTCTTTGATCTCATCATCAGCTCTAACTATTGGTCTTGGTCCATTTCTTGCAACCAATGACAAGAAAATCTTAAACTAA
Protein sequence

>MS.gene84625.t1

MATFLRNFNCFAPSTEVSVKILVDEVRNKVLFVQAGKDFVDVLLSFLTLPLGTIARLLSQESNMKNVSVGSLSLLYQSVSNLDKENFRSDFEKELLVRPINLMEQYCKYLKLNIDDTEKLRSFNCGKQKCSDIPKKRSCYCCEKKRTYLCEVKKPAKNGFVPVTATFLISDDLNVKPDNSQISQNSVSLLKYLGCENMDSIKIVTVDITRKEILDLVKCSLWSATPLTDVFLSKKLFIEKPRPVNVLDLDFGSMGAHLVRGTIEVKAMVRKSNKKILYALGEEDFADLLLNFLTFPLGGVENMLNGNSGLDNIDNLFKSMVDLDPERYFKSKSDLLSKQVKSNFDGKQIIKSPSTYMVTDDLVITPGSSTDAISFLTKMRIPLSDLEERMISIGNKEAHSLLKASLISSSALTIGLGPFLATNDKKILN