AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048074

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048074.t1 MTR_4g019340 86.735 490 36 4 8 491 37 503 0.0 827
MS.gene048074.t1 MTR_4g017830 74.906 530 126 4 3 530 6 530 0.0 781
MS.gene048074.t1 MTR_4g017440 67.671 498 151 6 3 497 8 498 0.0 641
MS.gene048074.t1 MTR_4g017410 63.793 522 148 8 1 510 1 493 0.0 627
MS.gene048074.t1 MTR_4g017550 65.817 471 141 9 36 501 18 473 0.0 590
MS.gene048074.t1 MTR_4g017470 62.355 518 148 6 1 510 1 479 0.0 589
MS.gene048074.t1 MTR_4g017610 58.788 495 176 8 4 497 8 475 0.0 551
MS.gene048074.t1 MTR_4g019310 44.008 509 250 18 1 497 1 486 3.68e-117 355
MS.gene048074.t1 MTR_7g066260 34.070 543 283 14 3 530 9 491 8.31e-83 266
MS.gene048074.t1 MTR_7g066340 34.438 543 270 16 2 530 5 475 1.03e-82 265
MS.gene048074.t1 MTR_7g066350 34.608 523 257 14 1 504 1 457 2.42e-78 253
MS.gene048074.t1 MTR_7g066350 30.588 255 146 9 268 513 9 241 3.89e-17 84.3
MS.gene048074.t1 MTR_7g066570 35.192 520 277 16 3 505 8 484 2.03e-77 254
MS.gene048074.t1 MTR_7g066410 34.201 538 285 16 5 503 7 514 8.49e-76 248
MS.gene048074.t1 MTR_7g058710 32.197 528 292 12 1 507 1 483 7.77e-75 245
MS.gene048074.t1 MTR_7g066400 34.109 516 247 15 2 504 5 440 3.36e-72 237
MS.gene048074.t1 MTR_7g012680 33.973 521 247 15 3 505 8 449 1.17e-71 236
MS.gene048074.t1 MTR_7g012680 27.711 249 132 8 256 495 2 211 9.07e-13 70.9
MS.gene048074.t1 MTR_7g066430 34.843 508 288 13 10 501 5 485 2.96e-70 233
MS.gene048074.t1 MTR_1g041315 32.939 507 249 17 5 485 10 451 2.91e-68 228
MS.gene048074.t1 MTR_7g066360 33.024 539 284 14 3 531 8 479 4.63e-65 219
MS.gene048074.t1 MTR_7g062280 34.411 526 272 18 10 507 11 491 2.29e-64 218
MS.gene048074.t1 MTR_7g063660 32.177 519 298 15 1 507 1 477 4.90e-62 211
MS.gene048074.t1 MTR_7g063880 32.227 512 276 16 10 506 12 467 1.74e-61 209
MS.gene048074.t1 MTR_7g063880 28.063 253 118 9 268 494 11 225 6.29e-13 71.2
MS.gene048074.t1 MTR_7g062300 32.816 515 281 15 3 500 6 472 5.20e-60 206
MS.gene048074.t1 MTR_7g066580 31.200 500 268 13 15 499 1 439 1.53e-58 201
MS.gene048074.t1 MTR_7g063840 30.934 514 302 12 3 507 4 473 4.07e-57 198
MS.gene048074.t1 MTR_7g063900 33.203 512 298 14 2 501 3 482 5.09e-57 198
MS.gene048074.t1 MTR_7g066290 36.559 372 202 11 3 359 9 361 4.83e-55 191
MS.gene048074.t1 MTR_2g029400 29.779 497 242 10 1 489 6 403 5.52e-52 182
MS.gene048074.t1 MTR_7g063820 32.890 526 292 17 1 507 1 484 1.08e-51 184
MS.gene048074.t1 MTR_4g019240 75.630 119 23 3 4 121 8 121 8.42e-51 172
MS.gene048074.t1 MTR_4g019240 85.915 71 10 0 459 529 112 182 4.22e-29 114
MS.gene048074.t1 MTR_7g063920 30.219 503 268 14 10 507 12 436 1.00e-50 180
MS.gene048074.t1 MTR_7g063890 30.970 536 293 17 1 508 19 505 6.08e-50 179
MS.gene048074.t1 MTR_7g063830 30.326 521 272 16 1 507 1 444 9.29e-50 177
MS.gene048074.t1 MTR_7g063670 30.078 512 278 15 8 507 14 457 2.31e-45 166
MS.gene048074.t1 MTR_7g066480 35.376 359 186 13 10 351 17 346 7.90e-42 155
MS.gene048074.t1 MTR_7g058700 33.520 358 159 13 21 350 531 837 1.12e-41 160
MS.gene048074.t1 MTR_7g066280 28.821 458 255 14 98 530 1 412 2.48e-41 154
MS.gene048074.t1 MTR_3g007740 29.191 507 288 15 1 501 1 442 1.96e-40 152
MS.gene048074.t1 MTR_3g065200 27.383 493 270 14 10 495 4 415 8.10e-40 150
MS.gene048074.t1 MTR_7g066490 33.333 348 194 11 10 351 17 332 9.60e-37 141
MS.gene048074.t1 MTR_7g066310 34.962 266 117 5 268 530 193 405 3.26e-36 139
MS.gene048074.t1 MTR_7g066310 38.816 152 76 5 10 154 8 149 1.10e-23 103
MS.gene048074.t1 MTR_7g066310 33.846 130 77 3 268 388 7 136 2.03e-11 66.2
MS.gene048074.t1 MTR_7g066680 31.579 323 159 9 216 497 33 334 2.75e-28 115
MS.gene048074.t1 MTR_1g014060 32.609 230 128 7 18 239 9 219 1.53e-25 108
MS.gene048074.t1 MTR_1g014060 35.266 207 99 4 298 501 210 384 1.95e-20 94.0
MS.gene048074.t1 MTR_4g019350 51.485 101 36 2 326 425 1 89 9.19e-24 95.9
MS.gene048074.t1 MTR_8g445860 30.159 252 120 7 268 495 13 232 3.61e-22 95.9
MS.gene048074.t1 MTR_8g445860 30.962 239 142 6 10 241 14 236 2.93e-19 87.4
MS.gene048074.t1 MTR_1g115440 29.880 251 148 7 2 241 4 237 5.47e-22 95.5
MS.gene048074.t1 MTR_1g115440 31.535 241 134 8 268 495 11 233 8.13e-20 89.4
MS.gene048074.t1 MTR_7g063720 29.630 243 135 3 267 506 22 231 1.64e-21 94.0
MS.gene048074.t1 MTR_7g100420 30.887 327 196 8 173 497 95 393 2.39e-21 96.7
MS.gene048074.t1 MTR_7g063850 30.120 249 143 7 266 507 64 288 1.82e-20 92.4
MS.gene048074.t1 MTR_7g062270 35.000 200 101 8 1 191 1 180 9.80e-20 91.7
MS.gene048074.t1 MTR_0150s0010 30.932 236 142 5 268 495 10 232 2.56e-19 87.8
MS.gene048074.t1 MTR_0150s0010 30.279 251 147 7 2 241 3 236 9.20e-19 86.3
MS.gene048074.t1 MTR_8g023240 23.164 354 219 9 9 347 37 352 3.49e-18 88.2
MS.gene048074.t1 MTR_1g115455 27.626 257 144 5 1 241 1 231 8.88e-15 74.3
MS.gene048074.t1 MTR_1g115455 37.975 79 47 1 268 344 9 87 5.45e-11 63.2
MS.gene048074.t1 MTR_0150s0030 35.294 102 57 2 268 366 8 103 9.73e-14 70.9
MS.gene048074.t1 MTR_7g066390 43.137 102 55 2 429 530 50 148 1.14e-13 69.3
MS.gene048074.t1 MTR_8g445910 36.275 102 56 2 268 366 8 103 1.47e-13 71.2
MS.gene048074.t1 MTR_8g044880 36.275 102 56 2 268 366 8 103 9.38e-13 69.3
MS.gene048074.t1 MTR_1g115450 40.506 79 45 1 268 344 7 85 9.40e-13 66.2
MS.gene048074.t1 MTR_1g115450 34.483 116 61 1 10 125 8 108 2.30e-11 62.0
MS.gene048074.t1 MTR_6g006800 56.897 58 15 2 1 56 1 50 6.39e-12 61.6
MS.gene048074.t1 MTR_8g445920 40.909 66 39 0 268 333 10 75 2.24e-11 61.2
MS.gene048074.t1 MTR_8g044890 40.909 66 39 0 268 333 10 75 2.24e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048074.t1 AT5G01120 30.275 545 327 13 1 530 1 507 1.29e-61 211
MS.gene048074.t1 AT3G09140 32.096 539 274 17 1 497 1 489 8.63e-61 208
MS.gene048074.t1 AT5G43240 31.969 513 291 14 10 497 10 489 1.33e-60 208
MS.gene048074.t1 AT5G43240 31.969 513 291 14 10 497 10 489 1.33e-60 208
MS.gene048074.t1 AT5G43240 31.969 513 291 14 10 497 10 489 1.33e-60 208
MS.gene048074.t1 AT5G01130 31.864 499 276 14 3 498 4 441 4.88e-60 205
MS.gene048074.t1 AT3G09140 30.511 567 274 18 1 497 1 517 1.97e-55 195
MS.gene048074.t1 AT5G01140 31.471 537 291 19 3 530 4 472 1.39e-54 191
MS.gene048074.t1 AT5G01150 29.259 540 327 13 3 530 4 500 1.54e-50 181
MS.gene048074.t1 AT3G09110 34.706 340 189 9 1 329 1 318 9.15e-49 172
MS.gene048074.t1 AT3G09120 34.030 335 186 11 1 322 1 313 2.37e-44 159
MS.gene048074.t1 AT3G09120 29.958 237 144 9 268 495 6 229 9.20e-15 75.9
MS.gene048074.t1 AT5G37320 29.077 509 297 16 16 504 18 482 8.56e-44 162
MS.gene048074.t1 AT5G43240 29.545 352 213 8 160 497 15 345 6.41e-30 121

Find 108 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATGGGTCATTGTTTC+TGG 0.156709 4.4:+82020888 MS.gene048074:CDS
TAATAAACAGCCTAATAATT+TGG 0.167423 4.4:+82020819 MS.gene048074:CDS
GGGGTCTTTATTAAGGAAAA+TGG 0.196844 4.4:+82020874 MS.gene048074:CDS
TCAAAATGGGGTCTTTATTA+AGG 0.213604 4.4:+82020867 MS.gene048074:CDS
GAGTATAATTCTAGTTATTA+TGG 0.242560 4.4:+82023716 MS.gene048074:CDS
AAAGATTGTGCCAAGTTCTT+TGG 0.297409 4.4:+82020924 MS.gene048074:CDS
ATAACTCAGTCTTCTAGTTT+AGG 0.304871 4.4:-82024754 None:intergenic
TTGCACCCACGACATTAAAA+TGG 0.305874 4.4:+82023367 MS.gene048074:CDS
CAGGGGAATGAGGTTCAAAA+TGG 0.309879 4.4:+82020853 MS.gene048074:CDS
CCACTCACTACATATTATTA+TGG 0.320058 4.4:+82023674 MS.gene048074:CDS
ATGCAGATATTGGTGGAATC+AGG 0.322458 4.4:+82020955 MS.gene048074:CDS
CCCTCACTCCAAACGATGTT+TGG 0.334877 4.4:+82020623 MS.gene048074:CDS
TTCTGATTTGAGTCAATTAC+AGG 0.342522 4.4:+82020981 MS.gene048074:CDS
AGGGTCCATTGTAAAGGTTT+TGG 0.343635 4.4:+82023490 MS.gene048074:CDS
AATGATTCACATGGATTCTT+CGG 0.347163 4.4:-82020676 None:intergenic
GAGAGTGTCAACAAAGTCTT+TGG 0.349073 4.4:-82020458 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.351633 4.4:+82023470 MS.gene048074:CDS
CACACACAACTTTGGAAAAC+AGG 0.361346 4.4:+82021008 MS.gene048074:CDS
ACTGCTGATGCAAACTGGTT+TGG 0.367245 4.4:-82023332 None:intergenic
TAATTTGGATTCTGAGAGTC+AGG 0.371338 4.4:+82020834 MS.gene048074:CDS
AGCAAAAGCCTTGACTGAAA+TGG 0.377248 4.4:+82023805 MS.gene048074:CDS
CTCTCAGAATCCAAATTATT+AGG 0.379415 4.4:-82020829 None:intergenic
GCTTCCTTACAATACCATTA+GGG 0.381396 4.4:+82023471 MS.gene048074:CDS
CATCGTTGTTTGTGGTTAAG+AGG 0.384127 4.4:-82020519 None:intergenic
CTTTGACTGCTGATGCAAAC+TGG 0.388699 4.4:-82023337 None:intergenic
GGTGACTTCCATGCAGATAT+TGG 0.389389 4.4:+82020945 MS.gene048074:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4.4:-82023638 None:intergenic
CTAGAATTATACTCTTGCTT+TGG 0.399361 4.4:-82023707 None:intergenic
ACAGGGTTCCAAACATCGTT+TGG 0.403560 4.4:-82020631 None:intergenic
CAGAGGCTCATGAGAGGTTA+AGG 0.420057 4.4:-82023264 None:intergenic
AACGGTAGAATTAAAGATAG+AGG 0.436841 4.4:+82023745 MS.gene048074:CDS
GGGTCTTTATTAAGGAAAAT+GGG 0.437810 4.4:+82020875 MS.gene048074:CDS
CAGGAAGTCACACACAACTT+TGG 0.438918 4.4:+82021000 MS.gene048074:CDS
CAGAATCTTGATTGTACTTG+TGG 0.438965 4.4:+82020787 MS.gene048074:CDS
ACTAGTTTGAACACACTTTG+AGG 0.444744 4.4:-82024707 None:intergenic
ATTATTAGGCTGTTTATTAG+TGG 0.447282 4.4:-82020815 None:intergenic
ACCATTAGGGTCCATTGTAA+AGG 0.460196 4.4:+82023484 MS.gene048074:CDS
CGCTCCATGTTACTCAATCC+TGG 0.462371 4.4:+82023593 MS.gene048074:CDS
AGCAACATTTGTTTGCAGAC+AGG 0.463660 4.4:-82020649 None:intergenic
TTGTTGATCATCGTTGTTTG+TGG 0.465421 4.4:-82020527 None:intergenic
AGGGGAATGAGGTTCAAAAT+GGG 0.466903 4.4:+82020854 MS.gene048074:CDS
GCAACATTTGTTTGCAGACA+GGG 0.472548 4.4:-82020648 None:intergenic
CCAAACATCGTTTGGAGTGA+GGG 0.474902 4.4:-82020623 None:intergenic
ACCTTTACAATGGACCCTAA+TGG 0.477568 4.4:-82023485 None:intergenic
TTATTAGGCTGTTTATTAGT+GGG 0.484521 4.4:-82020814 None:intergenic
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4.4:-82023643 None:intergenic
GCTGATGCAAACTGGTTTGG+CGG 0.490283 4.4:-82023329 None:intergenic
CAAAGTGTGTTCAAACTAGT+AGG 0.500953 4.4:+82024710 MS.gene048074:CDS
ATGGAAGTCACCAAAGAACT+TGG 0.501440 4.4:-82020934 None:intergenic
GTACAAGAGTGTAGAGAGCT+TGG 0.505497 4.4:+82023547 MS.gene048074:CDS
TCTTGGGTCCATTTCAGTCA+AGG 0.507464 4.4:-82023813 None:intergenic
TGGTGGCGAGTGGAAGAGAA+AGG 0.511396 4.4:-82020489 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.518635 4.4:+82023680 MS.gene048074:CDS
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4.4:-82023281 None:intergenic
TGAATATTGATGACACTGAA+TGG 0.522820 4.4:+82020716 MS.gene048074:CDS
TTAATTCTTTCAAATATGAA+AGG 0.523699 4.4:-82023940 None:intergenic
TGGACCCTAATGGTATTGTA+AGG 0.526033 4.4:-82023475 None:intergenic
TTCTGAGAGTCAGGGGAATG+AGG 0.529992 4.4:+82020843 MS.gene048074:CDS
AGGCAAGAATTAGCAGAAAG+TGG 0.533853 4.4:-82023920 None:intergenic
TGTGGTTAAGAGGCGAATGA+TGG 0.534640 4.4:-82020509 None:intergenic
CCTTGTTGATCTTGAAGTGA+AGG 0.535507 4.4:+82023970 MS.gene048074:CDS
TGCAGATATTGGTGGAATCA+GGG 0.535787 4.4:+82020956 MS.gene048074:CDS
TCAAAATTTACACTGACTAG+TGG 0.539589 4.4:+82024640 MS.gene048074:CDS
GAGGAATGATGTTGATTCTG+AGG 0.541322 4.4:-82020566 None:intergenic
CTGATGCAAACTGGTTTGGC+GGG 0.543289 4.4:-82023328 None:intergenic
CTTCAAGATCAACAAGGGGA+AGG 0.544062 4.4:-82023964 None:intergenic
ATTTACACTGACTAGTGGAC+TGG 0.547720 4.4:+82024645 MS.gene048074:CDS
TAGAGAGCTTGGACTCTTCG+TGG 0.547747 4.4:+82023558 MS.gene048074:CDS
TCAAAGTGTGTTGCGACACC+AGG 0.549416 4.4:-82023611 None:intergenic
TCCAAACATCGTTTGGAGTG+AGG 0.557226 4.4:-82020624 None:intergenic
TAGTTATTATGGTTATCAAA+CGG 0.564215 4.4:+82023727 MS.gene048074:CDS
GGAGTGATTTCTAAGTCGCA+TGG 0.571812 4.4:+82023770 MS.gene048074:CDS
GTAGAATTAAAGATAGAGGG+AGG 0.580072 4.4:+82023749 MS.gene048074:CDS
ACGGTAGAATTAAAGATAGA+GGG 0.581849 4.4:+82023746 MS.gene048074:CDS
ACCATCCAAAACCTTTACAA+TGG 0.583435 4.4:-82023495 None:intergenic
TCTCCTACACTATATAATGC+CGG 0.585136 4.4:-82023881 None:intergenic
TCAGAATCAACATCATTCCT+CGG 0.586673 4.4:+82020568 MS.gene048074:CDS
GAAGTCAACAAAGTTTCCAC+TGG 0.587458 4.4:-82023441 None:intergenic
GACTTCCATGCAGATATTGG+TGG 0.595400 4.4:+82020948 MS.gene048074:CDS
AATTTGGATTCTGAGAGTCA+GGG 0.602975 4.4:+82020835 MS.gene048074:CDS
CCTTCACTTCAAGATCAACA+AGG 0.610416 4.4:-82023970 None:intergenic
AGGTTAAGGTGTACTTGAGG+AGG 0.616375 4.4:-82023250 None:intergenic
TTCTTGCATAATGATTCACA+TGG 0.617558 4.4:-82020685 None:intergenic
ATGTACATGAGGAATGTTGA+GGG 0.622021 4.4:-82023648 None:intergenic
AGGCGAATGATGGTGGCGAG+TGG 0.622630 4.4:-82020499 None:intergenic
ATTTGGATTCTGAGAGTCAG+GGG 0.625749 4.4:+82020836 MS.gene048074:CDS
GTGAGTGGTGGATGTACATG+AGG 0.635076 4.4:-82023659 None:intergenic
TGATTCCACCAATATCTGCA+TGG 0.636872 4.4:-82020953 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.648287 4.4:-82024621 None:intergenic
GGTGGGATTTGTGAAGAGAC+CGG 0.651602 4.4:+82023862 MS.gene048074:CDS
CTTCACTTCAAGATCAACAA+GGG 0.654366 4.4:-82023969 None:intergenic
GAAGTGAAGGTGATATGCAT+TGG 0.654807 4.4:+82023983 MS.gene048074:CDS
TAATAATATGTAGTGAGTGG+TGG 0.656097 4.4:-82023671 None:intergenic
AGACCGGCATTATATAGTGT+AGG 0.657855 4.4:+82023878 MS.gene048074:CDS
GGGTTTGTACGCTTCCATAG+AGG 0.661182 4.4:-82020603 None:intergenic
GAGAGGTTAAGGTGTACTTG+AGG 0.667782 4.4:-82023253 None:intergenic
ATAATCTGTGCAGAAGCCAG+TGG 0.673897 4.4:+82023425 MS.gene048074:CDS
ATTTGTCAGAGGCTCATGAG+AGG 0.675408 4.4:-82023270 None:intergenic
TTCACTTCAAGATCAACAAG+GGG 0.676098 4.4:-82023968 None:intergenic
GATGTACATGAGGAATGTTG+AGG 0.679220 4.4:-82023649 None:intergenic
ACACAACTTTGGAAAACAGG+AGG 0.691626 4.4:+82021011 MS.gene048074:CDS
GGGGAATGAGGTTCAAAATG+GGG 0.691714 4.4:+82020855 MS.gene048074:CDS
GGTTAAGAGGCGAATGATGG+TGG 0.700313 4.4:-82020506 None:intergenic
GATATGCATTGGTGAAGCTG+AGG 0.712892 4.4:+82023994 MS.gene048074:CDS
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4.4:-82024618 None:intergenic
CCATAATAATATGTAGTGAG+TGG 0.727149 4.4:-82023674 None:intergenic
GACACCAGGATTGAGTAACA+TGG 0.730789 4.4:-82023597 None:intergenic
TGTACATGAGGAATGTTGAG+GGG 0.757600 4.4:-82023647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAGAATGTTATAT+TGG + chr4.4:82023159-82023178 MS.gene048074:intron 10.0%
!!! CAATTTATTTTTTTAAAACT+CGG - chr4.4:82021419-82021438 None:intergenic 10.0%
!!! TCATTTTCTTAAAATTTTAT+TGG + chr4.4:82021165-82021184 MS.gene048074:intron 10.0%
!!! TTTTAAAAGAATGTTATATT+GGG + chr4.4:82023160-82023179 MS.gene048074:intron 10.0%
!! GAAATAATATGTTTAGATAT+AGG + chr4.4:82024381-82024400 MS.gene048074:intron 15.0%
!! TAATAAAATTATTGGACTTA+TGG - chr4.4:82024205-82024224 None:intergenic 15.0%
!! TCAAAATAACTAATGAATAA+TGG + chr4.4:82021792-82021811 MS.gene048074:intron 15.0%
!! TTAATTCTTTCAAATATGAA+AGG - chr4.4:82023943-82023962 None:intergenic 15.0%
!! TTTAAAAGAATGTTATATTG+GGG + chr4.4:82023161-82023180 MS.gene048074:intron 15.0%
!!! ACATCTTTTTTTAATTTGTT+GGG - chr4.4:82023842-82023861 None:intergenic 15.0%
!!! TTTATAACTTTCGTTTTTTA+GGG + chr4.4:82021960-82021979 MS.gene048074:intron 15.0%
!! AAACGAAAGTTATAAAGTTA+AGG - chr4.4:82021956-82021975 None:intergenic 20.0%
!! AAATTAAAAAAAGATGTGGT+GGG + chr4.4:82023845-82023864 MS.gene048074:CDS 20.0%
!! AATATGTTTAGATATAGGTT+GGG + chr4.4:82024386-82024405 MS.gene048074:intron 20.0%
!! AATTCAATACCTCAAATTAT+AGG - chr4.4:82021869-82021888 None:intergenic 20.0%
!! ATACAAGATATTAAACCAAA+CGG - chr4.4:82023106-82023125 None:intergenic 20.0%
!! ATAGAGTACAATAGATTTAA+GGG - chr4.4:82022250-82022269 None:intergenic 20.0%
!! ATTAGTTCGATAACTAAATA+AGG - chr4.4:82022444-82022463 None:intergenic 20.0%
!! CAACAAATTAAAAAAAGATG+TGG + chr4.4:82023841-82023860 MS.gene048074:CDS 20.0%
!! CAGAATAATTAGTGTAAAAA+TGG - chr4.4:82022548-82022567 None:intergenic 20.0%
!! TAATAAACAGCCTAATAATT+TGG + chr4.4:82020819-82020838 MS.gene048074:CDS 20.0%
!! TAATATGTTTAGATATAGGT+TGG + chr4.4:82024385-82024404 MS.gene048074:intron 20.0%
!! TAGTTATTATGGTTATCAAA+CGG + chr4.4:82023727-82023746 MS.gene048074:CDS 20.0%
!! TAGTTGTTGTACTTAAATTA+CGG + chr4.4:82022732-82022751 MS.gene048074:intron 20.0%
!! TTAGACAACAAATAAACAAA+AGG - chr4.4:82024057-82024076 None:intergenic 20.0%
!! TTAGTTCGATAACTAAATAA+GGG - chr4.4:82022443-82022462 None:intergenic 20.0%
!!! ATCTTTTTTTAATTTGTTGG+GGG - chr4.4:82023840-82023859 None:intergenic 20.0%
!!! CACAGTTTCAAATATTTTTT+CGG - chr4.4:82021457-82021476 None:intergenic 20.0%
!!! CACATCTTTTTTTAATTTGT+TGG - chr4.4:82023843-82023862 None:intergenic 20.0%
!!! CATCTTTTTTTAATTTGTTG+GGG - chr4.4:82023841-82023860 None:intergenic 20.0%
!!! CTTTATAACTTTCGTTTTTT+AGG + chr4.4:82021959-82021978 MS.gene048074:intron 20.0%
!!! GAGTATAATTCTAGTTATTA+TGG + chr4.4:82023716-82023735 MS.gene048074:CDS 20.0%
!!! TATAATTTGAGGTATTGAAT+TGG + chr4.4:82021868-82021887 MS.gene048074:intron 20.0%
!!! TGAATCATTGTTCTAAATTA+TGG + chr4.4:82021475-82021494 MS.gene048074:intron 20.0%
!!! TTGTTATTGTAGTAAAATGA+GGG + chr4.4:82021524-82021543 MS.gene048074:intron 20.0%
! AAACATTCACAATGTTATGA+TGG + chr4.4:82022696-82022715 MS.gene048074:intron 25.0%
! AAATTATTGGACTTATGGAA+AGG - chr4.4:82024200-82024219 None:intergenic 25.0%
! AATAGAAAGTGATAAACTCT+AGG - chr4.4:82022160-82022179 None:intergenic 25.0%
! AATCAATTAGGAACAATTTG+AGG - chr4.4:82022490-82022509 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG + chr4.4:82023680-82023699 MS.gene048074:CDS 25.0%
! AGAAAAAGATTTAACCTTCA+AGG + chr4.4:82022345-82022364 MS.gene048074:intron 25.0%
! ATAACTAAATAAGGGATGTA+AGG - chr4.4:82022435-82022454 None:intergenic 25.0%
! ATCATCTGTTAAGAATAGAA+AGG + chr4.4:82022000-82022019 MS.gene048074:intron 25.0%
! ATTATTAGGCTGTTTATTAG+TGG - chr4.4:82020818-82020837 None:intergenic 25.0%
! CAAATTAAAAAAAGATGTGG+TGG + chr4.4:82023844-82023863 MS.gene048074:CDS 25.0%
! CATTTGTATGTATGTTATCT+TGG + chr4.4:82023185-82023204 MS.gene048074:intron 25.0%
! GAAAAAGATTTAACCTTCAA+GGG + chr4.4:82022346-82022365 MS.gene048074:intron 25.0%
! GATAGAGTACAATAGATTTA+AGG - chr4.4:82022251-82022270 None:intergenic 25.0%
! TAACAATGTCCTATAATTTG+AGG + chr4.4:82021857-82021876 MS.gene048074:intron 25.0%
! TAACTAAATAAGGGATGTAA+GGG - chr4.4:82022434-82022453 None:intergenic 25.0%
! TAATTTGAGTGAAGAGTTAA+AGG + chr4.4:82022984-82023003 MS.gene048074:intron 25.0%
! TACAAACATGTTATGAAACA+CGG - chr4.4:82021221-82021240 None:intergenic 25.0%
! TAGTGTACCATAAATGAAAA+GGG + chr4.4:82022658-82022677 MS.gene048074:intron 25.0%
! TATAAAAAATGTAGTGTACC+TGG - chr4.4:82024308-82024327 None:intergenic 25.0%
! TTAGTGTACCATAAATGAAA+AGG + chr4.4:82022657-82022676 MS.gene048074:intron 25.0%
! TTATTAGGCTGTTTATTAGT+GGG - chr4.4:82020817-82020836 None:intergenic 25.0%
! TTCAAAATTGTATTTGTCAG+AGG - chr4.4:82023284-82023303 None:intergenic 25.0%
!! ATGTTTTCCCTTTTCATTTA+TGG - chr4.4:82022668-82022687 None:intergenic 25.0%
!! CTCATTTTACTACAATAACA+AGG - chr4.4:82021525-82021544 None:intergenic 25.0%
!! GAAGGTTAAATCTTTTTCTT+TGG - chr4.4:82022344-82022363 None:intergenic 25.0%
!!! CTTGTTATTGTAGTAAAATG+AGG + chr4.4:82021523-82021542 MS.gene048074:intron 25.0%
!!! TTTTTAGGGTAGTTTGTATA+TGG + chr4.4:82021974-82021993 MS.gene048074:intron 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG - chr4.4:82021412-82021431 None:intergenic 25.0%
AACCTTAAAGGGAATAAGTT+GGG + chr4.4:82022273-82022292 MS.gene048074:intron 30.0%
AACGGTAGAATTAAAGATAG+AGG + chr4.4:82023745-82023764 MS.gene048074:CDS 30.0%
AATGATTCACATGGATTCTT+CGG - chr4.4:82020679-82020698 None:intergenic 30.0%
AATGTAGTAGTAGGGAATTA+GGG + chr4.4:82022082-82022101 MS.gene048074:intron 30.0%
ACGGTAGAATTAAAGATAGA+GGG + chr4.4:82023746-82023765 MS.gene048074:CDS 30.0%
AGAAACAGAATGTAGTAGTA+GGG + chr4.4:82022074-82022093 MS.gene048074:intron 30.0%
CCACTCACTACATATTATTA+TGG + chr4.4:82023674-82023693 MS.gene048074:CDS 30.0%
CCATAATAATATGTAGTGAG+TGG - chr4.4:82023677-82023696 None:intergenic 30.0%
CTAGAATTATACTCTTGCTT+TGG - chr4.4:82023710-82023729 None:intergenic 30.0%
CTCTCAGAATCCAAATTATT+AGG - chr4.4:82020832-82020851 None:intergenic 30.0%
GCAATATTGGAACGAATATT+TGG - chr4.4:82022792-82022811 None:intergenic 30.0%
GGGTCTTTATTAAGGAAAAT+GGG + chr4.4:82020875-82020894 MS.gene048074:CDS 30.0%
GGTACACTAATAACTTTATG+TGG - chr4.4:82022647-82022666 None:intergenic 30.0%
TAAGAATAGAAAGGAACGTA+AGG + chr4.4:82022009-82022028 MS.gene048074:intron 30.0%
TAATAATATGTAGTGAGTGG+TGG - chr4.4:82023674-82023693 None:intergenic 30.0%
TACTCTATCAGAACCTTAAA+GGG + chr4.4:82022262-82022281 MS.gene048074:intron 30.0%
TCAAAATGGGGTCTTTATTA+AGG + chr4.4:82020867-82020886 MS.gene048074:CDS 30.0%
TGCACAGATAAGTAAGAATT+GGG + chr4.4:82022108-82022127 MS.gene048074:intron 30.0%
TGTTATGATGGTTTACTTAG+TGG + chr4.4:82022708-82022727 MS.gene048074:intron 30.0%
TTCGAATGCTATACATATCT+TGG + chr4.4:82024500-82024519 MS.gene048074:intron 30.0%
TTCTTGCATAATGATTCACA+TGG - chr4.4:82020688-82020707 None:intergenic 30.0%
TTGCACAGATAAGTAAGAAT+TGG + chr4.4:82022107-82022126 MS.gene048074:intron 30.0%
! ATTTTCAGTGGAATCGTTTT+TGG - chr4.4:82020394-82020413 None:intergenic 30.0%
! CCTAATTGATTTCATAAGCT+GGG + chr4.4:82022499-82022518 MS.gene048074:intron 30.0%
! CTGTCTATTAAGATTTTCAG+TGG - chr4.4:82020406-82020425 None:intergenic 30.0%
! TCAAAATTTACACTGACTAG+TGG + chr4.4:82024640-82024659 MS.gene048074:CDS 30.0%
! TCCTAATTGATTTCATAAGC+TGG + chr4.4:82022498-82022517 MS.gene048074:intron 30.0%
! TGAATATTGATGACACTGAA+TGG + chr4.4:82020716-82020735 MS.gene048074:CDS 30.0%
! TGGAAGCATAAATAAAGATG+AGG - chr4.4:82022627-82022646 None:intergenic 30.0%
! TTCTGATTTGAGTCAATTAC+AGG + chr4.4:82020981-82021000 MS.gene048074:CDS 30.0%
!! AATTAGTTTGTCAGTTAGAG+GGG - chr4.4:82022467-82022486 None:intergenic 30.0%
!! CAGTGTAAATTTTGATGTCA+AGG - chr4.4:82024635-82024654 None:intergenic 30.0%
!! GAATTAGTTTGTCAGTTAGA+GGG - chr4.4:82022468-82022487 None:intergenic 30.0%
!!! AGACGTAGTTTTGTGATTTT+TGG + chr4.4:82024345-82024364 MS.gene048074:intron 30.0%
!!! GACGTAGTTTTGTGATTTTT+GGG + chr4.4:82024346-82024365 MS.gene048074:intron 30.0%
!!! TTTGCTTTTTGAACTTGCAT+TGG + chr4.4:82021903-82021922 MS.gene048074:intron 30.0%
AAAGATTGTGCCAAGTTCTT+TGG + chr4.4:82020924-82020943 MS.gene048074:CDS 35.0%
AAATCAAGAGGTAAGAATCC+TGG - chr4.4:82024579-82024598 None:intergenic 35.0%
AAATTAGTAGGTCCTTGAAC+CGG + chr4.4:82021390-82021409 MS.gene048074:intron 35.0%
AAGACAACTGTGTCTTTAGT+TGG - chr4.4:82024285-82024304 None:intergenic 35.0%
AAGTTGGGTAAAAGAGAAGA+TGG + chr4.4:82022288-82022307 MS.gene048074:intron 35.0%
ACACTGTTATTGTTACCGTT+TGG + chr4.4:82023088-82023107 MS.gene048074:intron 35.0%
ACCATCCAAAACCTTTACAA+TGG - chr4.4:82023498-82023517 None:intergenic 35.0%
AGAACTATGTTGTGAATCGT+TGG + chr4.4:82021648-82021667 MS.gene048074:intron 35.0%
AGATGAGGTGAATGAAGATA+AGG - chr4.4:82022612-82022631 None:intergenic 35.0%
AGCTTCCTTACAATACCATT+AGG + chr4.4:82023470-82023489 MS.gene048074:CDS 35.0%
ATCTGTACATCAAAAGGACA+GGG - chr4.4:82023224-82023243 None:intergenic 35.0%
ATGTACATGAGGAATGTTGA+GGG - chr4.4:82023651-82023670 None:intergenic 35.0%
ATGTTTGTAGAGTAAGACCT+TGG + chr4.4:82021232-82021251 MS.gene048074:intron 35.0%
CAAAGTGTGTTCAAACTAGT+AGG + chr4.4:82024710-82024729 MS.gene048074:CDS 35.0%
CAGAAACAGAATGTAGTAGT+AGG + chr4.4:82022073-82022092 MS.gene048074:intron 35.0%
CAGAATCTTGATTGTACTTG+TGG + chr4.4:82020787-82020806 MS.gene048074:CDS 35.0%
CATAAGTGTCACATAAGTGA+CGG - chr4.4:82021129-82021148 None:intergenic 35.0%
CCCAGCTTATGAAATCAATT+AGG - chr4.4:82022502-82022521 None:intergenic 35.0%
CCTGTAAATTGCAAATCAAG+AGG - chr4.4:82024591-82024610 None:intergenic 35.0%
CTTCACTTCAAGATCAACAA+GGG - chr4.4:82023972-82023991 None:intergenic 35.0%
CTTGTTACGAAGAGCAATAT+TGG - chr4.4:82022805-82022824 None:intergenic 35.0%
GAACCTTAAAGGGAATAAGT+TGG + chr4.4:82022272-82022291 MS.gene048074:intron 35.0%
GAATGTAGTAGTAGGGAATT+AGG + chr4.4:82022081-82022100 MS.gene048074:intron 35.0%
GCTTCCTTACAATACCATTA+GGG + chr4.4:82023471-82023490 MS.gene048074:CDS 35.0%
GGGGTCTTTATTAAGGAAAA+TGG + chr4.4:82020874-82020893 MS.gene048074:CDS 35.0%
GTACTCTATCAGAACCTTAA+AGG + chr4.4:82022261-82022280 MS.gene048074:intron 35.0%
GTAGAATTAAAGATAGAGGG+AGG + chr4.4:82023749-82023768 MS.gene048074:CDS 35.0%
GTTCAAGGACCTACTAATTT+GGG - chr4.4:82021390-82021409 None:intergenic 35.0%
TACCCAACTTATTCCCTTTA+AGG - chr4.4:82022278-82022297 None:intergenic 35.0%
TATCAGATGCGTATCAGTAT+CGG - chr4.4:82024167-82024186 None:intergenic 35.0%
TATTGCTCTTCGTAACAAGT+TGG + chr4.4:82022806-82022825 MS.gene048074:intron 35.0%
TCAGAATCAACATCATTCCT+CGG + chr4.4:82020568-82020587 MS.gene048074:CDS 35.0%
TCATATCATACTGTGTATCC+AGG + chr4.4:82024558-82024577 MS.gene048074:intron 35.0%
TCTCCTACACTATATAATGC+CGG - chr4.4:82023884-82023903 None:intergenic 35.0%
TTCAACATGACACAGATATG+AGG - chr4.4:82024537-82024556 None:intergenic 35.0%
TTCACTTCAAGATCAACAAG+GGG - chr4.4:82023971-82023990 None:intergenic 35.0%
TTCAGCATCTGTACATCAAA+AGG - chr4.4:82023230-82023249 None:intergenic 35.0%
TTGTTGATCATCGTTGTTTG+TGG - chr4.4:82020530-82020549 None:intergenic 35.0%
! AATTTGGATTCTGAGAGTCA+GGG + chr4.4:82020835-82020854 MS.gene048074:CDS 35.0%
! ACTAGTTTGAACACACTTTG+AGG - chr4.4:82024710-82024729 None:intergenic 35.0%
! AGTAAGAATTGGGAGAGTTT+TGG + chr4.4:82022118-82022137 MS.gene048074:intron 35.0%
! ATAGACTAGCCCACAAAAAA+TGG - chr4.4:82021318-82021337 None:intergenic 35.0%
! ATGTTTAGATATAGGTTGGG+TGG + chr4.4:82024389-82024408 MS.gene048074:intron 35.0%
! GTAAGAATTGGGAGAGTTTT+GGG + chr4.4:82022119-82022138 MS.gene048074:intron 35.0%
! TAAGAATTGGGAGAGTTTTG+GGG + chr4.4:82022120-82022139 MS.gene048074:intron 35.0%
! TAATTTGGATTCTGAGAGTC+AGG + chr4.4:82020834-82020853 MS.gene048074:CDS 35.0%
! TGTTTAGATATAGGTTGGGT+GGG + chr4.4:82024390-82024409 MS.gene048074:intron 35.0%
! TTGGACTTATGGAAAGGTAT+TGG - chr4.4:82024194-82024213 None:intergenic 35.0%
! TTGGATGGTAACTCTTTTGT+TGG + chr4.4:82023509-82023528 MS.gene048074:CDS 35.0%
!! AACGTCCATTTTAATGTCGT+GGG - chr4.4:82023375-82023394 None:intergenic 35.0%
!! CCTCTAAAACCTTTATCTTG+CGG + chr4.4:82021597-82021616 MS.gene048074:intron 35.0%
!! CCTCTTGATTTGCAATTTAC+AGG + chr4.4:82024588-82024607 MS.gene048074:intron 35.0%
!! GGAATTAGTTTGTCAGTTAG+AGG - chr4.4:82022469-82022488 None:intergenic 35.0%
!! GTAGATGGGGAAAAAGTATT+AGG - chr4.4:82022213-82022232 None:intergenic 35.0%
!! TAACGTCCATTTTAATGTCG+TGG - chr4.4:82023376-82023395 None:intergenic 35.0%
!! TGGACTTATGGAAAGGTATT+GGG - chr4.4:82024193-82024212 None:intergenic 35.0%
!! TTAATTTGTTGGGGGATCTT+GGG - chr4.4:82023832-82023851 None:intergenic 35.0%
!! TTTAATTTGTTGGGGGATCT+TGG - chr4.4:82023833-82023852 None:intergenic 35.0%
!! TTTTGACTGAATGTGTCTCT+AGG + chr4.4:82021094-82021113 MS.gene048074:intron 35.0%
!!! TCCATTGTAAAGGTTTTGGA+TGG + chr4.4:82023494-82023513 MS.gene048074:CDS 35.0%
AAGTATTAGGATCAACCCTC+TGG - chr4.4:82022200-82022219 None:intergenic 40.0%
AATTGCAACAGGAGTAGATG+GGG - chr4.4:82022226-82022245 None:intergenic 40.0%
ACCATTAGGGTCCATTGTAA+AGG + chr4.4:82023484-82023503 MS.gene048074:CDS 40.0%
ACCTTTACAATGGACCCTAA+TGG - chr4.4:82023488-82023507 None:intergenic 40.0%
AGACCGGCATTATATAGTGT+AGG + chr4.4:82023878-82023897 MS.gene048074:CDS 40.0%
AGAGAGAGTCATATACAAGC+GGG - chr4.4:82022374-82022393 None:intergenic 40.0%
AGCAAAAGCCTTGACTGAAA+TGG + chr4.4:82023805-82023824 MS.gene048074:CDS 40.0%
AGCAACATTTGTTTGCAGAC+AGG - chr4.4:82020652-82020671 None:intergenic 40.0%
AGGCAAGAATTAGCAGAAAG+TGG - chr4.4:82023923-82023942 None:intergenic 40.0%
AGGGGAATGAGGTTCAAAAT+GGG + chr4.4:82020854-82020873 MS.gene048074:CDS 40.0%
AGTAAAATGAGGGTTACGCA+GGG + chr4.4:82021534-82021553 MS.gene048074:intron 40.0%
ATGCAGATATTGGTGGAATC+AGG + chr4.4:82020955-82020974 MS.gene048074:CDS 40.0%
ATGGAAGTCACCAAAGAACT+TGG - chr4.4:82020937-82020956 None:intergenic 40.0%
CAATTGCAACAGGAGTAGAT+GGG - chr4.4:82022227-82022246 None:intergenic 40.0%
CAGAGAGAGTCATATACAAG+CGG - chr4.4:82022375-82022394 None:intergenic 40.0%
CATCGTTGTTTGTGGTTAAG+AGG - chr4.4:82020522-82020541 None:intergenic 40.0%
CATCTGTACATCAAAAGGAC+AGG - chr4.4:82023225-82023244 None:intergenic 40.0%
CCTTCACTTCAAGATCAACA+AGG - chr4.4:82023973-82023992 None:intergenic 40.0%
CCTTGTTGATCTTGAAGTGA+AGG + chr4.4:82023970-82023989 MS.gene048074:CDS 40.0%
CTAAATTATGGTCGCGATTG+TGG + chr4.4:82021487-82021506 MS.gene048074:intron 40.0%
GAAGTCAACAAAGTTTCCAC+TGG - chr4.4:82023444-82023463 None:intergenic 40.0%
GAAGTGAAGGTGATATGCAT+TGG + chr4.4:82023983-82024002 MS.gene048074:CDS 40.0%
GAATAGAAAGGAACGTAAGG+AGG + chr4.4:82022012-82022031 MS.gene048074:intron 40.0%
GAGACACATTCAGTCAAAAG+TGG - chr4.4:82021093-82021112 None:intergenic 40.0%
GATGTACATGAGGAATGTTG+AGG - chr4.4:82023652-82023671 None:intergenic 40.0%
GATTTAAGGGCAATTGCAAC+AGG - chr4.4:82022237-82022256 None:intergenic 40.0%
GCAACATTTGTTTGCAGACA+GGG - chr4.4:82020651-82020670 None:intergenic 40.0%
GGAAAATGGGTCATTGTTTC+TGG + chr4.4:82020888-82020907 MS.gene048074:CDS 40.0%
GGTTCAAGGACCTACTAATT+TGG - chr4.4:82021391-82021410 None:intergenic 40.0%
TAAAGACACAGTTGTCTTCC+AGG + chr4.4:82024287-82024306 MS.gene048074:intron 40.0%
TAGTAAAATGAGGGTTACGC+AGG + chr4.4:82021533-82021552 MS.gene048074:intron 40.0%
TCGATGCCAACAAATCTGAA+CGG + chr4.4:82022400-82022419 MS.gene048074:intron 40.0%
TCTGATCCTATTGATCCAGA+GGG + chr4.4:82022182-82022201 MS.gene048074:intron 40.0%
TGATTCCACCAATATCTGCA+TGG - chr4.4:82020956-82020975 None:intergenic 40.0%
TGCAGATATTGGTGGAATCA+GGG + chr4.4:82020956-82020975 MS.gene048074:CDS 40.0%
TGGACCCTAATGGTATTGTA+AGG - chr4.4:82023478-82023497 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG - chr4.4:82023650-82023669 None:intergenic 40.0%
TTCAAGTGTTCAACACAAGC+AGG + chr4.4:82022581-82022600 MS.gene048074:intron 40.0%
TTGCACCCACGACATTAAAA+TGG + chr4.4:82023367-82023386 MS.gene048074:CDS 40.0%
TTGTAGAGTAAGACCTTGGA+GGG + chr4.4:82021236-82021255 MS.gene048074:intron 40.0%
TTTGAATGTGAGACCTTGAG+AGG - chr4.4:82021284-82021303 None:intergenic 40.0%
TTTGTAGAGTAAGACCTTGG+AGG + chr4.4:82021235-82021254 MS.gene048074:intron 40.0%
! ACACAACTTTGGAAAACAGG+AGG + chr4.4:82021011-82021030 MS.gene048074:CDS 40.0%
! AGGGTCCATTGTAAAGGTTT+TGG + chr4.4:82023490-82023509 MS.gene048074:CDS 40.0%
! ATTTACACTGACTAGTGGAC+TGG + chr4.4:82024645-82024664 MS.gene048074:CDS 40.0%
! ATTTGGATTCTGAGAGTCAG+GGG + chr4.4:82020836-82020855 MS.gene048074:CDS 40.0%
! CACACACAACTTTGGAAAAC+AGG + chr4.4:82021008-82021027 MS.gene048074:CDS 40.0%
! CTTTGGAAAACAGGAGGTAA+TGG + chr4.4:82021017-82021036 MS.gene048074:intron 40.0%
! GTTTAGATATAGGTTGGGTG+GGG + chr4.4:82024391-82024410 MS.gene048074:intron 40.0%
! TTTAGATATAGGTTGGGTGG+GGG + chr4.4:82024392-82024411 MS.gene048074:intron 40.0%
!! ACTTATGGAAAGGTATTGGG+CGG - chr4.4:82024190-82024209 None:intergenic 40.0%
!! CCGCAAGATAAAGGTTTTAG+AGG - chr4.4:82021600-82021619 None:intergenic 40.0%
!! GAGAGTGTCAACAAAGTCTT+TGG - chr4.4:82020461-82020480 None:intergenic 40.0%
!! GAGGAATGATGTTGATTCTG+AGG - chr4.4:82020569-82020588 None:intergenic 40.0%
!! GGAAGCATCAAAAACCTCTA+TGG + chr4.4:82020589-82020608 MS.gene048074:CDS 40.0%
!! GTGTGTGTGTGTTTTGGATA+GGG - chr4.4:82023068-82023087 None:intergenic 40.0%
!! TATACAGCTCTGGCTTTAGT+TGG + chr4.4:82021335-82021354 MS.gene048074:intron 40.0%
!! TGTGTGTGTGTGTTTTGGAT+AGG - chr4.4:82023069-82023088 None:intergenic 40.0%
!!! ATCGTTGGTCTTTTCAGTCT+AGG + chr4.4:82021663-82021682 MS.gene048074:intron 40.0%
!!! TCGTTGGTCTTTTCAGTCTA+GGG + chr4.4:82021664-82021683 MS.gene048074:intron 40.0%
AAAACTCGGTATCCGGTTCA+AGG - chr4.4:82021405-82021424 None:intergenic 45.0%
ACAGGGTTCCAAACATCGTT+TGG - chr4.4:82020634-82020653 None:intergenic 45.0%
ACGTAAGGAGGTAAGTAGAG+CGG + chr4.4:82022024-82022043 MS.gene048074:intron 45.0%
ACTGCTGATGCAAACTGGTT+TGG - chr4.4:82023335-82023354 None:intergenic 45.0%
AGCCCACAAAAAATGGCACA+GGG - chr4.4:82021311-82021330 None:intergenic 45.0%
AGGTTAAGGTGTACTTGAGG+AGG - chr4.4:82023253-82023272 None:intergenic 45.0%
ATAATCTGTGCAGAAGCCAG+TGG + chr4.4:82023425-82023444 MS.gene048074:CDS 45.0%
ATTTGTCAGAGGCTCATGAG+AGG - chr4.4:82023273-82023292 None:intergenic 45.0%
CAATTGCAGCCGCAAGATAA+AGG - chr4.4:82021609-82021628 None:intergenic 45.0%
CAGGAAGTCACACACAACTT+TGG + chr4.4:82021000-82021019 MS.gene048074:CDS 45.0%
CAGGGGAATGAGGTTCAAAA+TGG + chr4.4:82020853-82020872 MS.gene048074:CDS 45.0%
CTATGCTTCATAGACCACGT+GGG - chr4.4:82024104-82024123 None:intergenic 45.0%
CTCTGATCCTATTGATCCAG+AGG + chr4.4:82022181-82022200 MS.gene048074:intron 45.0%
CTCTGGATCAATAGGATCAG+AGG - chr4.4:82022183-82022202 None:intergenic 45.0%
CTTCAAGATCAACAAGGGGA+AGG - chr4.4:82023967-82023986 None:intergenic 45.0%
CTTTGACTGCTGATGCAAAC+TGG - chr4.4:82023340-82023359 None:intergenic 45.0%
GACACCAGGATTGAGTAACA+TGG - chr4.4:82023600-82023619 None:intergenic 45.0%
GACATGAGTCAGAAGCTCTT+AGG - chr4.4:82022925-82022944 None:intergenic 45.0%
GACTTCCATGCAGATATTGG+TGG + chr4.4:82020948-82020967 MS.gene048074:CDS 45.0%
GAGACACCGTTCAGATTTGT+TGG - chr4.4:82022409-82022428 None:intergenic 45.0%
GAGAGGTTAAGGTGTACTTG+AGG - chr4.4:82023256-82023275 None:intergenic 45.0%
GATCAACCCTCTGGATCAAT+AGG - chr4.4:82022191-82022210 None:intergenic 45.0%
GCAATTGCAACAGGAGTAGA+TGG - chr4.4:82022228-82022247 None:intergenic 45.0%
GCTACTCGAACAGTAATGTC+TGG + chr4.4:82021768-82021787 MS.gene048074:intron 45.0%
GCTACTCTGATGAGTGGTAA+AGG - chr4.4:82022949-82022968 None:intergenic 45.0%
GGAGTGATTTCTAAGTCGCA+TGG + chr4.4:82023770-82023789 MS.gene048074:CDS 45.0%
GGGGAATGAGGTTCAAAATG+GGG + chr4.4:82020855-82020874 MS.gene048074:CDS 45.0%
GGTGACTTCCATGCAGATAT+TGG + chr4.4:82020945-82020964 MS.gene048074:CDS 45.0%
TAGCCCACAAAAAATGGCAC+AGG - chr4.4:82021312-82021331 None:intergenic 45.0%
TCATAAGCTGGGCGATCTAT+TGG + chr4.4:82022510-82022529 MS.gene048074:intron 45.0%
TCTATGCTTCATAGACCACG+TGG - chr4.4:82024105-82024124 None:intergenic 45.0%
TCTTGGGTCCATTTCAGTCA+AGG - chr4.4:82023816-82023835 None:intergenic 45.0%
TGTAGAGTAAGACCTTGGAG+GGG + chr4.4:82021237-82021256 MS.gene048074:intron 45.0%
TGTGGTTAAGAGGCGAATGA+TGG - chr4.4:82020512-82020531 None:intergenic 45.0%
TTGATGTCAAGGAAGCTGCA+AGG - chr4.4:82024624-82024643 None:intergenic 45.0%
! AGAGGTTTTTGATGCTTCCG+AGG - chr4.4:82020588-82020607 None:intergenic 45.0%
! CAGTGTGTGTGTGTGTGTTT+TGG - chr4.4:82023074-82023093 None:intergenic 45.0%
! CCAAACATCGTTTGGAGTGA+GGG - chr4.4:82020626-82020645 None:intergenic 45.0%
! GATATGCATTGGTGAAGCTG+AGG + chr4.4:82023994-82024013 MS.gene048074:CDS 45.0%
! GTACAAGAGTGTAGAGAGCT+TGG + chr4.4:82023547-82023566 MS.gene048074:CDS 45.0%
! TCCAAACATCGTTTGGAGTG+AGG - chr4.4:82020627-82020646 None:intergenic 45.0%
!! GGTTGGTCTCCCAAATTAGT+AGG + chr4.4:82021378-82021397 MS.gene048074:intron 45.0%
!!! CTCCCTGTGCCATTTTTTGT+GGG + chr4.4:82021306-82021325 MS.gene048074:intron 45.0%
!!! TGGCGGGTTGTCTTTTTTCT+TGG - chr4.4:82023315-82023334 None:intergenic 45.0%
!! TAAAGAATTAATAAAATTAT+TGG - chr4.4:82024213-82024232 None:intergenic 5.0%
ATGTCAAGGAAGCTGCAAGG+AGG - chr4.4:82024621-82024640 None:intergenic 50.0%
CAGAGGCTCATGAGAGGTTA+AGG - chr4.4:82023267-82023286 None:intergenic 50.0%
CCACAAAAAATGGCACAGGG+AGG - chr4.4:82021308-82021327 None:intergenic 50.0%
CCCTCACTCCAAACGATGTT+TGG + chr4.4:82020623-82020642 MS.gene048074:CDS 50.0%
CGACATCGCAACTGCAATTG+CGG - chr4.4:82021568-82021587 None:intergenic 50.0%
CGCAATGCTACTCTGATGAG+TGG - chr4.4:82022955-82022974 None:intergenic 50.0%
CGCTCCATGTTACTCAATCC+TGG + chr4.4:82023593-82023612 MS.gene048074:CDS 50.0%
GACATGTCCAGTGTCGTATC+TGG + chr4.4:82021192-82021211 MS.gene048074:intron 50.0%
GGGTTTGTACGCTTCCATAG+AGG - chr4.4:82020606-82020625 None:intergenic 50.0%
GGTGGGATTTGTGAAGAGAC+CGG + chr4.4:82023862-82023881 MS.gene048074:CDS 50.0%
GGTTAAGAGGCGAATGATGG+TGG - chr4.4:82020509-82020528 None:intergenic 50.0%
TAGAGAGCTTGGACTCTTCG+TGG + chr4.4:82023558-82023577 MS.gene048074:CDS 50.0%
TCAAAGTGTGTTGCGACACC+AGG - chr4.4:82023614-82023633 None:intergenic 50.0%
! TTCTGAGAGTCAGGGGAATG+AGG + chr4.4:82020843-82020862 MS.gene048074:CDS 50.0%
!! CTGATGCAAACTGGTTTGGC+GGG - chr4.4:82023331-82023350 None:intergenic 50.0%
!! GCTGATGCAAACTGGTTTGG+CGG - chr4.4:82023332-82023351 None:intergenic 50.0%
!! GTGAGTGGTGGATGTACATG+AGG - chr4.4:82023662-82023681 None:intergenic 50.0%
!! TGGGCTAGTCTATACAGCTC+TGG + chr4.4:82021325-82021344 MS.gene048074:intron 50.0%
!!! CCTCCCTGTGCCATTTTTTG+TGG + chr4.4:82021305-82021324 MS.gene048074:intron 50.0%
ACGGACACCAGATACGACAC+TGG - chr4.4:82021202-82021221 None:intergenic 55.0%
AGTAAGACCTTGGAGGGGCT+TGG + chr4.4:82021242-82021261 MS.gene048074:intron 55.0%
ATACAAGCGGGAGCCCTTGA+AGG - chr4.4:82022362-82022381 None:intergenic 55.0%
CATCGCAACTGCAATTGCGG+TGG - chr4.4:82021565-82021584 None:intergenic 55.0%
CATGAGGAATGTTGAGGGGC+TGG - chr4.4:82023646-82023665 None:intergenic 55.0%
CTTCATAGACCACGTGGGAG+GGG - chr4.4:82024099-82024118 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr4.4:82021268-82021287 MS.gene048074:intron 55.0%
GCTTCATAGACCACGTGGGA+GGG - chr4.4:82024100-82024119 None:intergenic 55.0%
GTAAGACCTTGGAGGGGCTT+GGG + chr4.4:82021243-82021262 MS.gene048074:intron 55.0%
TGCTTCATAGACCACGTGGG+AGG - chr4.4:82024101-82024120 None:intergenic 55.0%
TTCATAGACCACGTGGGAGG+GGG - chr4.4:82024098-82024117 None:intergenic 55.0%
! TGGTGGCGAGTGGAAGAGAA+AGG - chr4.4:82020492-82020511 None:intergenic 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG - chr4.4:82023641-82023660 None:intergenic 55.0%
AACCGCGCTGTCTACTCGTG+GGG - chr4.4:82021362-82021381 None:intergenic 60.0%
ACGTGGGAGGGGGATCAAAG+AGG - chr4.4:82024088-82024107 None:intergenic 60.0%
CAACCGCGCTGTCTACTCGT+GGG - chr4.4:82021363-82021382 None:intergenic 60.0%
CAAGATCCCAAGCCCCTCCA+AGG - chr4.4:82021252-82021271 None:intergenic 60.0%
CTTGGAGGGGCTTGGGATCT+TGG + chr4.4:82021250-82021269 MS.gene048074:intron 60.0%
TCTTTGATCCCCCTCCCACG+TGG + chr4.4:82024087-82024106 MS.gene048074:intron 60.0%
TGCGGCTGCAATTGCTGCTG+CGG + chr4.4:82021615-82021634 MS.gene048074:intron 60.0%
!! AGGCGAATGATGGTGGCGAG+TGG - chr4.4:82020502-82020521 None:intergenic 60.0%
CCAACCGCGCTGTCTACTCG+TGG - chr4.4:82021364-82021383 None:intergenic 65.0%
CCACGAGTAGACAGCGCGGT+TGG + chr4.4:82021361-82021380 MS.gene048074:intron 65.0%
GACCCCACGAGTAGACAGCG+CGG + chr4.4:82021357-82021376 MS.gene048074:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 82020373 82024771 82020373 ID=MS.gene048074
chr4.4 mRNA 82020373 82024771 82020373 ID=MS.gene048074.t1;Parent=MS.gene048074
chr4.4 exon 82020373 82021032 82020373 ID=MS.gene048074.t1.exon1;Parent=MS.gene048074.t1
chr4.4 CDS 82020373 82021032 82020373 ID=cds.MS.gene048074.t1;Parent=MS.gene048074.t1
chr4.4 exon 82023242 82024015 82023242 ID=MS.gene048074.t1.exon2;Parent=MS.gene048074.t1
chr4.4 CDS 82023242 82024015 82023242 ID=cds.MS.gene048074.t1;Parent=MS.gene048074.t1
chr4.4 exon 82024610 82024771 82024610 ID=MS.gene048074.t1.exon3;Parent=MS.gene048074.t1
chr4.4 CDS 82024610 82024771 82024610 ID=cds.MS.gene048074.t1;Parent=MS.gene048074.t1
Gene Sequence

>MS.gene048074

ATGGCTTCTGAAGAAGAGCCAAAAACGATTCCACTGAAAATCTTAATAGACAGAGAAAACAACAAAGTAGTCGCTGTAGAATCAACCAAAGACTTTGTTGACACTCTCTTCAGCTTCCTTTCTCTTCCACTCGCCACCATCATTCGCCTCTTAACCACAAACAACGATGATCAACAACAACAAGAACAACAATCCTCAGAATCAACATCATTCCTCGGAAGCATCAAAAACCTCTATGGAAGCGTACAAACCCTCACTCCAAACGATGTTTGGAACCCTGTCTGCAAACAAATGTTGCTGAATCCGAAGAATCCATGTGAATCATTATGCAAGAAACTTTTCTTGAATATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATGCTTGTAACAAGTTTACAACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAATAAACAGCCTAATAATTTGGATTCTGAGAGTCAGGGGAATGAGGTTCAAAATGGGGTCTTTATTAAGGAAAATGGGTCATTGTTTCTGGTGTCTGATGATTTAAAGATTGTGCCAAGTTCTTTGGTGACTTCCATGCAGATATTGGTGGAATCAGGGTATTCTGATTTGAGTCAATTACAGGAAGTCACACACAACTTTGGAAAACAGGAGGTAATGGTGTTGTGTTTTACAATGTGTATTTTTATGTCATGTTACTCTGTTGCATTGCCACTTTTGACTGAATGTGTCTCTAGGTGTCTGACACCGTCACTTATGTGACACTTATGATTGCATTGAATTATGTCATTTTCTTAAAATTTTATTGGCGTCGACATGTCCAGTGTCGTATCTGGTGTCCGTGTTTCATAACATGTTTGTAGAGTAAGACCTTGGAGGGGCTTGGGATCTTGGAGTGTGCTCCTCTCAAGGTCTCACATTCAAATCCTCCCTGTGCCATTTTTTGTGGGCTAGTCTATACAGCTCTGGCTTTAGTTGGACCCCACGAGTAGACAGCGCGGTTGGTCTCCCAAATTAGTAGGTCCTTGAACCGGATACCGAGTTTTAAAAAAATAAATTGTAGCGTAAGAAAAATCCGAAAAAATATTTGAAACTGTGAATCATTGTTCTAAATTATGGTCGCGATTGTGGATACGATGCAAACCTTGTTATTGTAGTAAAATGAGGGTTACGCAGGGAGATGCCACCGCAATTGCAGTTGCGATGTCGTTGCAGAGACCTCTAAAACCTTTATCTTGCGGCTGCAATTGCTGCTGCGGACTACAATTTAGAACTATGTTGTGAATCGTTGGTCTTTTCAGTCTAGGGTTACTTAGAACTCAAGTCTTAAGTGTTTGCATTTTAGTCTAGTGTTAGTAGAATACACATGTTAACTATGAGTATCAAAATGCTACTCGAACAGTAATGTCTGGATCAAAATAACTAATGAATAATGGTTTTGAGATCTTTTCTGAGTTTTTCTTGTTTCACAGACAAGTTAACAATGTCCTATAATTTGAGGTATTGAATTGGTGATTCACTCTTTTTGCTTTTTGAACTTGCATTGGATGTTTAGACTGTTCTTGAATTATGAACCTTAACTTTATAACTTTCGTTTTTTAGGGTAGTTTGTATATGGAATATCATCTGTTAAGAATAGAAAGGAACGTAAGGAGGTAAGTAGAGCGGTCGTAACTGATATAGTTGTAAACTGACAGAAACAGAATGTAGTAGTAGGGAATTAGGGTGTTGCACAGATAAGTAAGAATTGGGAGAGTTTTGGGGCACTTTTGAATTAGCCTAGAGTTTATCACTTTCTATTCCTCTGATCCTATTGATCCAGAGGGTTGATCCTAATACTTTTTCCCCATCTACTCCTGTTGCAATTGCCCTTAAATCTATTGTACTCTATCAGAACCTTAAAGGGAATAAGTTGGGTAAAAGAGAAGATGGTTTTTACTGATTGAATAAAATTGAACAAAACCAAAGAAAAAGATTTAACCTTCAAGGGCTCCCGCTTGTATATGACTCTCTCTGACTGATCGATGCCAACAAATCTGAACGGTGTCTCTGCCCTTACATCCCTTATTTAGTTATCGAACTAATCCCCTCTAACTGACAAACTAATTCCTCAAATTGTTCCTAATTGATTTCATAAGCTGGGCGATCTATTGGTTAACAGTTCAACCATTTTTACACTAATTATTCTGATAAATATTGAATTTCAAGTGTTCAACACAAGCAGGTTGCACCTTATCTTCATTCACCTCATCTTTATTTATGCTTCCACATAAAGTTATTAGTGTACCATAAATGAAAAGGGAAAACATTACTTAATAAACATTCACAATGTTATGATGGTTTACTTAGTGGCTAGTTGTTGTACTTAAATTACGGACACACTATAAATCTTGAGTTAGAAATTAGTACTCCAAATATTCGTTCCAATATTGCTCTTCGTAACAAGTTGGTAAGTATTTTTTTTAATGTAACAACTAACAAGTTTTATTGTTTTTGCTGCTGTGCGATCAAGTAGAACATGCTGAAATGTGTTTTTCGTTGCACCTAAGAGCTTCTGACTCATGTCACCTTTACCACTCATCAGAGTAGCATTGCGTATCTCAACTAATTTGAGTGAAGAGTTAAAGGTGTTGAAATAGTTAAGAGAAAAATACTAACATAACAATTAATCAATATACTAATATTTCCCTATCCAAAACACACACACACACACTGTTATTGTTACCGTTTGGTTTAATATCTTGTATTTCTGTTATGTAATGTGAATTTGTTAGTGAAATATTTTAAAAGAATGTTATATTGGGGTCATTTGTATGTATGTTATCTTGGATAAAAATGTTTTCCCTGTCCTTTTGATGTACAGATGCTGAACCTCCTCAAGTACACCTTAACCTCTCATGAGCCTCTGACAAATACAATTTTGAAAAGCAGCTCCAAGAAAAAAGACAACCCGCCAAACCAGTTTGCATCAGCAGTCAAAGTAAAAACTTGCACCCACGACATTAAAATGGACGTTAAGCTAGTGCGAAGTAAATCTCAGAAAAAGATAATCTGTGCAGAAGCCAGTGGAAACTTTGTTGACTTCATGTTTAGCTTCCTTACAATACCATTAGGGTCCATTGTAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGAGCTTGGACTCTTCGTGGTGTACAAACTCGCGCTCCATGTTACTCAATCCTGGTGTCGCAACACACTTTGATTGTCCAAACCAGCCCCTCAACATTCCTCATGTACATCCACCACTCACTACATATTATTATGGTACAGGAACACCAAAGCAAGAGTATAATTCTAGTTATTATGGTTATCAAACGGTAGAATTAAAGATAGAGGGAGGAGTGATTTCTAAGTCGCATGGATTGATTTATAAAGCAAAAGCCTTGACTGAAATGGACCCAAGATCCCCCAACAAATTAAAAAAAGATGTGGTGGGATTTGTGAAGAGACCGGCATTATATAGTGTAGGAGATGATCTAAAAGTAAAACCACTTTCTGCTAATTCTTGCCTTTCATATTTGAAAGAATTAAACCTTCCCCTTGTTGATCTTGAAGTGAAGGTGATATGCATTGGTGAAGCTGAGGTAAAGTGACTACTATTACTAAATTTATAATTTTTTTTCCTTTTGTTTATTTGTTGTCTAAGTTTTTAGCCTCTTTGATCCCCCTCCCACGTGGTCTATGAAGCATAGATACTTCAAAATTAGAGAAGTATTGATGTATGACACGTATCCGATACTGATACGCATCTGATACCGCCCAATACCTTTCCATAAGTCCAATAATTTTATTAATTCTTTATGAAAATATTTTCATTGATACTTCTCAAATACATCTTCAATACTTCTTACCAACTAAAGACACAGTTGTCTTCCAGGTACACTACATTTTTTATATGCTTTACTAACTAAAGAGACGTAGTTTTGTGATTTTTGGGTCACATTCTTTAGAAATAATATGTTTAGATATAGGTTGGGTGGGGGAATTATATATGTAACTATGCTTACATGTTATGATTACAAGTACTTTTTTGTAAATTGCGATTACAATAATATCTTTATAAACGTTTTCGAATGCTATACATATCTTGGTTTTGTCGTATCCTCATATCTGTGTCATGTTGAATTCATATCATACTGTGTATCCAGGATTCTTACCTCTTGATTTGCAATTTACAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAATTTACACTGACTAGTGGACTGGAAGAATTTTTTAATGAGCAAAAACAAGATTCAAATTTGACCTCAAAGTGTGTTCAAACTAGTAGGCTTGATAAAGTTGCAAAGAAGCCTAAACTAGAAGACTGA
Protein sequence

>MS.gene048074.t1

MASEEEPKTIPLKILIDRENNKVVAVESTKDFVDTLFSFLSLPLATIIRLLTTNNDDQQQQEQQSSESTSFLGSIKNLYGSVQTLTPNDVWNPVCKQMLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDACNKFTTFQNLDCTCGKPTNKQPNNLDSESQGNEVQNGVFIKENGSLFLVSDDLKIVPSSLVTSMQILVESGYSDLSQLQEVTHNFGKQEMLNLLKYTLTSHEPLTNTILKSSSKKKDNPPNQFASAVKVKTCTHDIKMDVKLVRSKSQKKIICAEASGNFVDFMFSFLTIPLGSIVKVLDGNSFVGCVDNLYKSVESLDSSWCTNSRSMLLNPGVATHFDCPNQPLNIPHVHPPLTTYYYGTGTPKQEYNSSYYGYQTVELKIEGGVISKSHGLIYKAKALTEMDPRSPNKLKKDVVGFVKRPALYSVGDDLKVKPLSANSCLSYLKELNLPLVDLEVKVICIGEAEALSLLAASLTSKFTLTSGLEEFFNEQKQDSNLTSKCVQTSRLDKVAKKPKLED