AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96580.t1 MTR_7g058710 82.172 488 73 3 2 487 9 484 0.0 808
MS.gene96580.t1 MTR_7g058700 62.012 487 80 7 17 487 531 928 0.0 557
MS.gene96580.t1 MTR_7g066570 58.436 486 183 7 4 484 13 484 0.0 528
MS.gene96580.t1 MTR_7g012680 56.148 488 164 9 3 487 12 452 9.19e-174 496
MS.gene96580.t1 MTR_2g029400 53.191 470 140 6 3 469 12 404 6.10e-153 442
MS.gene96580.t1 MTR_7g066260 52.361 487 186 10 3 480 13 462 2.11e-151 441
MS.gene96580.t1 MTR_7g066580 50.823 486 189 9 11 485 1 447 4.11e-150 436
MS.gene96580.t1 MTR_7g066340 51.037 482 192 8 4 480 11 453 3.93e-146 427
MS.gene96580.t1 MTR_7g066350 50.924 487 180 10 3 477 7 446 1.25e-145 425
MS.gene96580.t1 MTR_1g041315 49.793 484 177 11 3 464 12 451 2.18e-142 418
MS.gene96580.t1 MTR_7g066400 47.119 486 181 12 5 477 12 434 1.63e-128 381
MS.gene96580.t1 MTR_7g066430 44.309 492 252 10 3 480 2 485 6.03e-128 381
MS.gene96580.t1 MTR_7g066290 47.314 484 186 9 3 480 13 433 1.42e-125 373
MS.gene96580.t1 MTR_7g066410 41.897 506 261 11 6 481 11 513 4.62e-122 367
MS.gene96580.t1 MTR_7g066410 31.169 231 142 7 5 226 284 506 5.44e-18 87.0
MS.gene96580.t1 MTR_7g066360 47.737 486 192 14 6 480 15 449 4.63e-119 358
MS.gene96580.t1 MTR_7g066310 43.568 482 165 11 3 480 5 383 7.05e-110 332
MS.gene96580.t1 MTR_7g063900 40.000 500 263 14 5 487 10 489 1.74e-98 305
MS.gene96580.t1 MTR_7g062280 37.945 506 270 14 4 487 9 492 1.96e-97 303
MS.gene96580.t1 MTR_7g063660 38.229 497 268 14 4 487 8 478 5.64e-97 301
MS.gene96580.t1 MTR_7g063890 40.845 497 262 15 4 486 26 504 3.42e-96 300
MS.gene96580.t1 MTR_7g063840 38.493 491 266 15 6 487 11 474 2.85e-95 296
MS.gene96580.t1 MTR_7g066680 53.020 298 104 5 213 477 41 335 4.23e-91 281
MS.gene96580.t1 MTR_7g062300 36.511 493 263 14 2 476 9 469 1.41e-90 284
MS.gene96580.t1 MTR_7g063880 38.554 498 252 17 4 486 10 468 9.03e-89 280
MS.gene96580.t1 MTR_7g063880 27.888 251 150 10 250 487 4 236 4.19e-11 65.5
MS.gene96580.t1 MTR_7g063820 38.508 496 270 14 6 487 11 485 3.18e-88 278
MS.gene96580.t1 MTR_7g063920 37.755 490 237 12 4 487 10 437 3.91e-86 271
MS.gene96580.t1 MTR_1g014060 63.208 212 72 3 14 224 9 215 5.05e-85 267
MS.gene96580.t1 MTR_1g014060 47.748 222 95 3 266 487 191 391 5.85e-53 183
MS.gene96580.t1 MTR_4g019310 34.980 506 289 16 5 486 8 497 9.19e-85 270
MS.gene96580.t1 MTR_7g063830 36.640 494 240 13 6 486 11 444 2.22e-84 267
MS.gene96580.t1 MTR_3g065200 37.100 469 224 11 5 466 3 407 1.40e-81 261
MS.gene96580.t1 MTR_7g066280 40.047 422 196 13 84 480 1 390 1.25e-78 251
MS.gene96580.t1 MTR_7g063670 36.756 487 259 13 6 487 16 458 5.18e-76 246
MS.gene96580.t1 MTR_3g007740 35.628 494 244 14 4 481 8 443 8.90e-75 242
MS.gene96580.t1 MTR_7g066480 42.432 370 173 13 3 358 14 357 5.42e-72 234
MS.gene96580.t1 MTR_7g066480 44.595 74 41 0 408 481 349 422 1.39e-11 66.6
MS.gene96580.t1 MTR_4g017830 32.039 515 296 14 6 486 13 507 6.40e-72 237
MS.gene96580.t1 MTR_4g017830 27.451 255 153 8 5 237 267 511 3.90e-14 75.1
MS.gene96580.t1 MTR_4g017410 34.043 517 269 19 6 486 10 490 7.21e-71 234
MS.gene96580.t1 MTR_7g066490 41.322 363 169 12 5 358 16 343 1.41e-70 231
MS.gene96580.t1 MTR_7g066490 48.101 79 40 1 408 485 335 413 4.27e-12 68.2
MS.gene96580.t1 MTR_4g019340 33.939 495 267 15 6 470 39 503 3.82e-70 232
MS.gene96580.t1 MTR_4g019340 34.615 104 61 2 5 108 303 399 3.37e-11 65.9
MS.gene96580.t1 MTR_4g017440 33.592 515 275 19 6 480 15 502 7.00e-70 231
MS.gene96580.t1 MTR_4g017610 34.137 498 263 15 8 477 16 476 7.71e-70 230
MS.gene96580.t1 MTR_4g017470 31.650 515 267 15 6 486 13 476 1.05e-63 214
MS.gene96580.t1 MTR_4g017470 25.333 225 140 7 5 211 234 448 5.46e-13 71.2
MS.gene96580.t1 MTR_4g017550 31.677 483 259 17 35 478 21 471 1.32e-54 190
MS.gene96580.t1 MTR_4g017550 30.088 226 118 10 5 211 247 451 4.19e-12 68.6
MS.gene96580.t1 MTR_7g063720 34.914 232 129 4 257 487 23 233 3.38e-37 137
MS.gene96580.t1 MTR_7g063720 27.753 227 134 9 3 226 21 220 1.82e-15 76.3
MS.gene96580.t1 MTR_7g062270 42.373 177 90 5 6 179 11 178 4.86e-36 138
MS.gene96580.t1 MTR_2g067310 42.529 174 55 3 16 189 58 186 7.65e-29 114
MS.gene96580.t1 MTR_7g063850 30.032 313 182 8 183 486 4 288 5.11e-28 113
MS.gene96580.t1 MTR_1g115440 31.301 246 134 6 4 231 10 238 4.52e-25 103
MS.gene96580.t1 MTR_1g115440 28.571 238 147 9 250 473 4 232 1.42e-16 79.7
MS.gene96580.t1 MTR_8g445860 30.864 243 142 7 2 232 10 238 2.11e-24 102
MS.gene96580.t1 MTR_8g445860 26.250 240 157 7 245 473 1 231 1.55e-16 79.3
MS.gene96580.t1 MTR_0150s0010 33.051 236 147 5 2 231 7 237 2.92e-24 101
MS.gene96580.t1 MTR_0150s0010 27.391 230 150 7 250 468 3 226 4.57e-15 75.1
MS.gene96580.t1 MTR_8g023240 24.899 494 306 19 6 478 38 487 1.26e-23 104
MS.gene96580.t1 MTR_7g100420 31.900 279 160 9 213 480 138 397 1.70e-20 94.0
MS.gene96580.t1 MTR_7g100420 73.810 42 11 0 6 47 40 81 4.80e-13 71.2
MS.gene96580.t1 MTR_7g066390 45.192 104 50 2 377 480 26 122 3.36e-18 82.0
MS.gene96580.t1 MTR_4g019240 41.964 112 51 5 6 107 14 121 5.36e-17 79.3
MS.gene96580.t1 MTR_1g115455 28.063 253 135 8 2 232 6 233 2.89e-16 78.6
MS.gene96580.t1 MTR_7g063690 35.256 156 87 7 132 283 77 222 3.46e-15 75.5
MS.gene96580.t1 MTR_7g063690 68.750 48 15 0 6 53 13 60 3.67e-13 69.7
MS.gene96580.t1 MTR_1g115450 37.500 88 50 1 2 89 4 86 8.38e-15 72.0
MS.gene96580.t1 MTR_0150s0030 36.364 88 50 2 2 88 5 87 5.57e-12 65.5
MS.gene96580.t1 MTR_1g115470 37.374 99 54 3 1 96 1 94 1.57e-11 66.6
MS.gene96580.t1 MTR_8g445920 36.047 86 50 1 2 87 7 87 1.58e-11 61.6
MS.gene96580.t1 MTR_8g044890 36.047 86 50 1 2 87 7 87 1.58e-11 61.6
MS.gene96580.t1 MTR_7g063870 58.000 50 21 0 4 53 30 79 2.43e-11 64.3
MS.gene96580.t1 MTR_8g445910 37.500 88 49 2 2 88 5 87 4.64e-11 63.9
MS.gene96580.t1 MTR_8g044880 37.500 88 49 2 2 88 5 87 5.10e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96580.t1 AT5G01120 32.640 481 309 10 6 476 10 485 6.74e-72 237
MS.gene96580.t1 AT5G01150 30.769 494 314 10 5 486 9 486 3.34e-67 224
MS.gene96580.t1 AT5G43240 30.426 493 308 13 6 476 10 489 1.09e-61 210
MS.gene96580.t1 AT5G43240 30.426 493 308 13 6 476 10 489 1.09e-61 210
MS.gene96580.t1 AT5G43240 30.426 493 308 13 6 476 10 489 1.09e-61 210
MS.gene96580.t1 AT5G01140 27.869 488 309 10 5 487 9 458 3.48e-55 191
MS.gene96580.t1 AT3G09110 34.385 317 199 6 5 318 9 319 1.46e-53 184
MS.gene96580.t1 AT3G09140 29.070 516 301 14 3 481 7 494 1.95e-53 187
MS.gene96580.t1 AT5G01130 29.388 490 292 11 5 487 9 451 7.37e-52 182
MS.gene96580.t1 AT3G09140 27.574 544 301 14 3 481 7 522 6.45e-50 179
MS.gene96580.t1 AT3G09120 32.595 316 199 7 3 310 4 313 3.45e-47 166
MS.gene96580.t1 AT5G37320 27.364 497 296 16 15 481 19 480 1.90e-38 146
MS.gene96580.t1 AT5G43240 26.866 335 217 10 158 476 23 345 1.96e-22 99.0

Find 86 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCAATTGGAATTATT+TGG 0.146766 7.3:+46019839 None:intergenic
CAAGTTTGTACCTTTAAATT+TGG 0.202533 7.3:-46019716 MS.gene96580:CDS
AACATTGAAGATGTGAAATT+TGG 0.236925 7.3:-46020799 MS.gene96580:CDS
TTAGGATCAACCAAATTTAA+AGG 0.268846 7.3:+46019706 None:intergenic
AGCACTTCGTCTGTGGGAAT+TGG 0.318389 7.3:-46020624 MS.gene96580:CDS
CCAATTCATAACAAACATTA+AGG 0.329872 7.3:-46019343 MS.gene96580:CDS
TTTGAGATTAAATAACTTCC+GGG 0.362978 7.3:+46019919 None:intergenic
GAAGAAAGGGTTATTAGAAT+TGG 0.378932 7.3:-46019535 MS.gene96580:CDS
AAGCTGGAAATCTCTGATAT+TGG 0.388055 7.3:-46020385 MS.gene96580:CDS
CAAAGTTACATTGAGAGTTA+TGG 0.390167 7.3:-46020941 MS.gene96580:CDS
TTCAGGAATCGGGTTTGTTA+AGG 0.391995 7.3:-46020485 MS.gene96580:CDS
CCTTAATGTTTGTTATGAAT+TGG 0.392524 7.3:+46019343 None:intergenic
GCACTTCGTCTGTGGGAATT+GGG 0.395783 7.3:-46020623 MS.gene96580:CDS
GGTGGGGAAGCTACTCCAAT+TGG 0.417702 7.3:+46019829 None:intergenic
AGATATTCTGAAGTTGTCAT+TGG 0.419892 7.3:-46020241 MS.gene96580:CDS
AGCTTCTTAACACTGCCTTT+AGG 0.428623 7.3:-46020853 MS.gene96580:CDS
ATCTTGATGAACAATATCTA+TGG 0.429981 7.3:-46020744 MS.gene96580:CDS
TCAACGTTTGGTATGACAAA+TGG 0.431249 7.3:-46019372 MS.gene96580:CDS
GACAACCAAATAATTCCAAT+TGG 0.437125 7.3:-46019844 MS.gene96580:CDS
GTAGTGAGAAGGAAATCAAC+TGG 0.439748 7.3:-46020090 MS.gene96580:CDS
AGCTCAAATTGTGCAGCAAT+GGG 0.440040 7.3:+46019868 None:intergenic
AAAGGTACAAACTTGTCATC+AGG 0.440723 7.3:+46019724 None:intergenic
CAACCAGAAAATCTGAGTTC+AGG 0.444761 7.3:-46020502 MS.gene96580:CDS
GATTCCTAAATAAGCTCAAA+AGG 0.452463 7.3:+46020575 None:intergenic
GCTTGGATGAACTCAACGTT+TGG 0.454523 7.3:-46019384 MS.gene96580:CDS
GTCTCTGCATTCTAAAAGCT+TGG 0.457550 7.3:-46019401 MS.gene96580:CDS
CTGTAAATGATGTGGAAGAA+AGG 0.457723 7.3:-46019549 MS.gene96580:CDS
ACTCTGATACAGTGAGCTAA+TGG 0.460483 7.3:+46020774 None:intergenic
ATCTTCAATGTTCGACTCCT+CGG 0.461868 7.3:+46020810 None:intergenic
TGTAAATGATGTGGAAGAAA+GGG 0.465008 7.3:-46019548 MS.gene96580:CDS
TAAGCTTGCATGGAATTCCT+TGG 0.477817 7.3:+46020691 None:intergenic
GAAAATCTGAGTTCAGGAAT+CGG 0.478252 7.3:-46020496 MS.gene96580:CDS
AAAATCTGAGTTCAGGAATC+GGG 0.482116 7.3:-46020495 MS.gene96580:CDS
AGTCGTGGAGAATTTGCAAA+AGG 0.484219 7.3:-46019661 MS.gene96580:CDS
AAGCTCAAATTGTGCAGCAA+TGG 0.488270 7.3:+46019867 None:intergenic
TCAAGATGAAGTCTGTCAAA+GGG 0.491562 7.3:+46020208 None:intergenic
AGCATGACTGAGTTGAGTCC+CGG 0.498276 7.3:-46019937 MS.gene96580:CDS
GGAGTGTTGCATATGCTTGA+AGG 0.498562 7.3:-46019997 MS.gene96580:CDS
AATTCCCACAGACGAAGTGC+TGG 0.507573 7.3:+46020626 None:intergenic
ATATGCAACACTCCTCCTAC+GGG 0.508337 7.3:+46020006 None:intergenic
CCACAGACGAAGTGCTGGAT+AGG 0.511411 7.3:+46020631 None:intergenic
TTCAAGATGAAGTCTGTCAA+AGG 0.512232 7.3:+46020207 None:intergenic
CTTCTGACAATAAGCTTGCA+TGG 0.517353 7.3:+46020681 None:intergenic
CATATGCAACACTCCTCCTA+CGG 0.520606 7.3:+46020005 None:intergenic
TGTTGATATCAGCAAGAAAG+AGG 0.522522 7.3:-46020344 MS.gene96580:CDS
GCGTTAGAAGCAGATAGCTT+AGG 0.526053 7.3:+46019688 None:intergenic
GTGGCGGTGGAGATAATACT+TGG 0.526149 7.3:+46020524 None:intergenic
TAAGAATGACAATAATAGAC+AGG 0.529427 7.3:+46019808 None:intergenic
CCTATCCAGCACTTCGTCTG+TGG 0.535585 7.3:-46020631 MS.gene96580:CDS
GGGTTTGTTAAGGAAACCGC+TGG 0.535702 7.3:-46020475 MS.gene96580:CDS
TATACAACTACTTCACAAGC+TGG 0.537151 7.3:-46020401 MS.gene96580:CDS
AGGAATCAATTGTGCAGTTG+TGG 0.541823 7.3:-46020559 MS.gene96580:CDS
CTTCGCACATGCATAATGCT+TGG 0.543987 7.3:-46019750 MS.gene96580:CDS
TTTGTATGCTGAGGCAGGGA+AGG 0.547892 7.3:-46020896 MS.gene96580:CDS
GGTTATTAGAATTGGTCAGA+AGG 0.551108 7.3:-46019527 MS.gene96580:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.557411 7.3:+46020838 None:intergenic
GTCGTGGAGAATTTGCAAAA+GGG 0.558749 7.3:-46019660 MS.gene96580:CDS
GAATTGGGATTGTGTAAGAA+AGG 0.559576 7.3:-46020608 MS.gene96580:CDS
AAAAGGGCCATCAGAATACA+TGG 0.567965 7.3:-46019644 MS.gene96580:CDS
AATGACAATAATAGACAGGT+GGG 0.569744 7.3:+46019812 None:intergenic
AAATGTTTCTGTAAATGATG+TGG 0.571065 7.3:-46019557 MS.gene96580:CDS
GATTGTGTAAGAAAGGAAAG+TGG 0.574963 7.3:-46020601 MS.gene96580:CDS
CTATCCAGCACTTCGTCTGT+GGG 0.575094 7.3:-46020630 MS.gene96580:CDS
AAAGCGACATCTGAAGGAGG+TGG 0.578204 7.3:-46020129 MS.gene96580:CDS
TATTAGAATTGGTCAGAAGG+AGG 0.581812 7.3:-46019524 MS.gene96580:intron
TTTCTGACTCTCCCCGTAGG+AGG 0.585159 7.3:-46020018 MS.gene96580:CDS
TCAAATTGTGCAGCAATGGG+AGG 0.586331 7.3:+46019871 None:intergenic
ATTGTGTAAGAAAGGAAAGT+GGG 0.596290 7.3:-46020600 MS.gene96580:CDS
CAAATTGTGCAGCAATGGGA+GGG 0.600976 7.3:+46019872 None:intergenic
ACTGTTACCATGTATTCTGA+TGG 0.604062 7.3:+46019637 None:intergenic
AGTTACATTGAGAGTTATGG+TGG 0.605938 7.3:-46020938 MS.gene96580:CDS
TATCTGTGAAAGTAGTGAGA+AGG 0.607361 7.3:-46020101 MS.gene96580:CDS
AAAGCCGTGGAGGATGACAT+TGG 0.608156 7.3:+46019598 None:intergenic
TCTATGGTCTCGTACTTGCA+AGG 0.608255 7.3:-46020728 MS.gene96580:CDS
GAATGACAATAATAGACAGG+TGG 0.610807 7.3:+46019811 None:intergenic
TAGTCCAATGTCATCCTCCA+CGG 0.612336 7.3:-46019602 MS.gene96580:CDS
GAGTTATGGTGGACAAAGAG+AGG 0.612561 7.3:-46020927 MS.gene96580:CDS
AGGAAATGCTACTCAAGCCA+AGG 0.617283 7.3:-46020708 MS.gene96580:CDS
GCTTCTAACGCATCAAGTCG+TGG 0.623556 7.3:-46019676 MS.gene96580:CDS
GTCTGAAATAATAAATCCAG+CGG 0.625981 7.3:+46020459 None:intergenic
ATTTAAATGTGATAAAGCCG+TGG 0.645420 7.3:+46019585 None:intergenic
ATTCATAACAAACATTAAGG+AGG 0.651735 7.3:-46019340 MS.gene96580:CDS
TAAATGTGATAAAGCCGTGG+AGG 0.678458 7.3:+46019588 None:intergenic
TATTGCAAGACTAGTAGCCG+AGG 0.678892 7.3:-46020827 MS.gene96580:CDS
ATGACAATAATAGACAGGTG+GGG 0.721913 7.3:+46019813 None:intergenic
TATGCAACACTCCTCCTACG+GGG 0.762507 7.3:+46020007 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATGAAAATATATTC+TGG + chr7.3:46020822-46020841 None:intergenic 10.0%
!! TGTAAAAATAAGTATAATTA+AGG + chr7.3:46020017-46020036 None:intergenic 10.0%
!!! TTAATTATACTTATTTTTAC+AGG - chr7.3:46020016-46020035 MS.gene96580:CDS 10.0%
!!! TTTTGAGATTAAATAACTTC+CGG + chr7.3:46020369-46020388 None:intergenic 20.0%
! AACATTGAAGATGTGAAATT+TGG - chr7.3:46019485-46019504 MS.gene96580:intron 25.0%
! ATAACTGTTCCAAAAACATT+AGG + chr7.3:46019866-46019885 None:intergenic 25.0%
! ATCTTGATGAACAATATCTA+TGG - chr7.3:46019540-46019559 MS.gene96580:CDS 25.0%
! ATTCATAACAAACATTAAGG+AGG - chr7.3:46020944-46020963 MS.gene96580:CDS 25.0%
! CAAGTTTGTACCTTTAAATT+TGG - chr7.3:46020568-46020587 MS.gene96580:CDS 25.0%
! CCAATTCATAACAAACATTA+AGG - chr7.3:46020941-46020960 MS.gene96580:CDS 25.0%
! TAAGAATGACAATAATAGAC+AGG + chr7.3:46020479-46020498 None:intergenic 25.0%
! TTAGGATCAACCAAATTTAA+AGG + chr7.3:46020581-46020600 None:intergenic 25.0%
!! AAATGTTTCTGTAAATGATG+TGG - chr7.3:46020727-46020746 MS.gene96580:CDS 25.0%
!! TGTCATTCTTACATTTTTCA+TGG - chr7.3:46020488-46020507 MS.gene96580:CDS 25.0%
!! TTTGAGATTAAATAACTTCC+GGG + chr7.3:46020368-46020387 None:intergenic 25.0%
!!! ATTTGTTGTTAACATATTGC+AGG - chr7.3:46020860-46020879 MS.gene96580:CDS 25.0%
!!! CCTTAATGTTTGTTATGAAT+TGG + chr7.3:46020944-46020963 None:intergenic 25.0%
!!! GCTTTTTCAATCTGAAATAT+GGG + chr7.3:46020140-46020159 None:intergenic 25.0%
!!! TTTGTTGTTAACATATTGCA+GGG - chr7.3:46020861-46020880 MS.gene96580:CDS 25.0%
AATGACAATAATAGACAGGT+GGG + chr7.3:46020475-46020494 None:intergenic 30.0%
ATTGTGTAAGAAAGGAAAGT+GGG - chr7.3:46019684-46019703 MS.gene96580:CDS 30.0%
ATTTAAATGTGATAAAGCCG+TGG + chr7.3:46020702-46020721 None:intergenic 30.0%
CAAAGTTACATTGAGAGTTA+TGG - chr7.3:46019343-46019362 MS.gene96580:CDS 30.0%
CTACTCCAATTGGAATTATT+TGG + chr7.3:46020448-46020467 None:intergenic 30.0%
GAAGAAAGGGTTATTAGAAT+TGG - chr7.3:46020749-46020768 MS.gene96580:CDS 30.0%
GACAACCAAATAATTCCAAT+TGG - chr7.3:46020440-46020459 MS.gene96580:CDS 30.0%
GATTCCTAAATAAGCTCAAA+AGG + chr7.3:46019712-46019731 None:intergenic 30.0%
TGTAAATGATGTGGAAGAAA+GGG - chr7.3:46020736-46020755 MS.gene96580:CDS 30.0%
! GTCTGAAATAATAAATCCAG+CGG + chr7.3:46019828-46019847 None:intergenic 30.0%
! TATGTGATGCCTAATGTTTT+TGG - chr7.3:46019854-46019873 MS.gene96580:CDS 30.0%
!! AGATATTCTGAAGTTGTCAT+TGG - chr7.3:46020043-46020062 MS.gene96580:CDS 30.0%
!!! CGCTTTTTCAATCTGAAATA+TGG + chr7.3:46020141-46020160 None:intergenic 30.0%
AAAATCTGAGTTCAGGAATC+GGG - chr7.3:46019789-46019808 MS.gene96580:CDS 35.0%
AAGCTGGAAATCTCTGATAT+TGG - chr7.3:46019899-46019918 MS.gene96580:CDS 35.0%
ACTGTTACCATGTATTCTGA+TGG + chr7.3:46020650-46020669 None:intergenic 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7.3:46019449-46019468 None:intergenic 35.0%
AGTTACATTGAGAGTTATGG+TGG - chr7.3:46019346-46019365 MS.gene96580:CDS 35.0%
ATGACAATAATAGACAGGTG+GGG + chr7.3:46020474-46020493 None:intergenic 35.0%
ATTGAAAAAGCGACATCTGA+AGG - chr7.3:46020149-46020168 MS.gene96580:CDS 35.0%
CTGTAAATGATGTGGAAGAA+AGG - chr7.3:46020735-46020754 MS.gene96580:CDS 35.0%
GAAAATCTGAGTTCAGGAAT+CGG - chr7.3:46019788-46019807 MS.gene96580:CDS 35.0%
GAATGACAATAATAGACAGG+TGG + chr7.3:46020476-46020495 None:intergenic 35.0%
GAATTGGGATTGTGTAAGAA+AGG - chr7.3:46019676-46019695 MS.gene96580:CDS 35.0%
GATTGTGTAAGAAAGGAAAG+TGG - chr7.3:46019683-46019702 MS.gene96580:CDS 35.0%
GGTTATTAGAATTGGTCAGA+AGG - chr7.3:46020757-46020776 MS.gene96580:CDS 35.0%
TATACAACTACTTCACAAGC+TGG - chr7.3:46019883-46019902 MS.gene96580:CDS 35.0%
TATCTGTGAAAGTAGTGAGA+AGG - chr7.3:46020183-46020202 MS.gene96580:CDS 35.0%
TATTAGAATTGGTCAGAAGG+AGG - chr7.3:46020760-46020779 MS.gene96580:CDS 35.0%
TCAACGTTTGGTATGACAAA+TGG - chr7.3:46020912-46020931 MS.gene96580:CDS 35.0%
TCAAGATGAAGTCTGTCAAA+GGG + chr7.3:46020079-46020098 None:intergenic 35.0%
TGTTGATATCAGCAAGAAAG+AGG - chr7.3:46019940-46019959 MS.gene96580:CDS 35.0%
TTCAAGATGAAGTCTGTCAA+AGG + chr7.3:46020080-46020099 None:intergenic 35.0%
! AAAGGTACAAACTTGTCATC+AGG + chr7.3:46020563-46020582 None:intergenic 35.0%
! ATTCCTGAACTCAGATTTTC+TGG + chr7.3:46019788-46019807 None:intergenic 35.0%
! GGAACCTTTTGAGCTTATTT+AGG - chr7.3:46019705-46019724 MS.gene96580:CDS 35.0%
!! GAACAAAGTTTTGTATGCTG+AGG - chr7.3:46019379-46019398 MS.gene96580:CDS 35.0%
AAAAGGGCCATCAGAATACA+TGG - chr7.3:46020640-46020659 MS.gene96580:CDS 40.0%
AAGCTCAAATTGTGCAGCAA+TGG + chr7.3:46020420-46020439 None:intergenic 40.0%
ACTCTGATACAGTGAGCTAA+TGG + chr7.3:46019513-46019532 None:intergenic 40.0%
AGCTCAAATTGTGCAGCAAT+GGG + chr7.3:46020419-46020438 None:intergenic 40.0%
AGCTTCTTAACACTGCCTTT+AGG - chr7.3:46019431-46019450 MS.gene96580:intron 40.0%
AGGAATCAATTGTGCAGTTG+TGG - chr7.3:46019725-46019744 MS.gene96580:CDS 40.0%
AGTCGTGGAGAATTTGCAAA+AGG - chr7.3:46020623-46020642 MS.gene96580:CDS 40.0%
ATCTTCAATGTTCGACTCCT+CGG + chr7.3:46019477-46019496 None:intergenic 40.0%
CAACCAGAAAATCTGAGTTC+AGG - chr7.3:46019782-46019801 MS.gene96580:CDS 40.0%
CTTCTGACAATAAGCTTGCA+TGG + chr7.3:46019606-46019625 None:intergenic 40.0%
GTAGTGAGAAGGAAATCAAC+TGG - chr7.3:46020194-46020213 MS.gene96580:CDS 40.0%
GTCGTGGAGAATTTGCAAAA+GGG - chr7.3:46020624-46020643 MS.gene96580:CDS 40.0%
TAAATGTGATAAAGCCGTGG+AGG + chr7.3:46020699-46020718 None:intergenic 40.0%
TAAGCTTGCATGGAATTCCT+TGG + chr7.3:46019596-46019615 None:intergenic 40.0%
! GTCTCTGCATTCTAAAAGCT+TGG - chr7.3:46020883-46020902 MS.gene96580:CDS 40.0%
!! AAAGTTTTGTATGCTGAGGC+AGG - chr7.3:46019383-46019402 MS.gene96580:CDS 40.0%
!! AAGTTTTGTATGCTGAGGCA+GGG - chr7.3:46019384-46019403 MS.gene96580:CDS 40.0%
!! GGAGAGATTTTGTTTGCTGA+AGG - chr7.3:46020215-46020234 MS.gene96580:CDS 40.0%
!! TTCAGGAATCGGGTTTGTTA+AGG - chr7.3:46019799-46019818 MS.gene96580:CDS 40.0%
!!! GAACTCAGATTTTCTGGTTG+TGG + chr7.3:46019782-46019801 None:intergenic 40.0%
AAGCCACTTCGTAAGACTGT+TGG - chr7.3:46020784-46020803 MS.gene96580:CDS 45.0%
ACACCAACAGTCTTACGAAG+TGG + chr7.3:46020790-46020809 None:intergenic 45.0%
AGGAAATGCTACTCAAGCCA+AGG - chr7.3:46019576-46019595 MS.gene96580:CDS 45.0%
ATATGCAACACTCCTCCTAC+GGG + chr7.3:46020281-46020300 None:intergenic 45.0%
CAAATTGTGCAGCAATGGGA+GGG + chr7.3:46020415-46020434 None:intergenic 45.0%
CATATGCAACACTCCTCCTA+CGG + chr7.3:46020282-46020301 None:intergenic 45.0%
CTTCGCACATGCATAATGCT+TGG - chr7.3:46020534-46020553 MS.gene96580:CDS 45.0%
GAAAAAGCGACATCTGAAGG+AGG - chr7.3:46020152-46020171 MS.gene96580:CDS 45.0%
GCGTTAGAAGCAGATAGCTT+AGG + chr7.3:46020599-46020618 None:intergenic 45.0%
GCTTGGATGAACTCAACGTT+TGG - chr7.3:46020900-46020919 MS.gene96580:CDS 45.0%
TAGTCCAATGTCATCCTCCA+CGG - chr7.3:46020682-46020701 MS.gene96580:CDS 45.0%
TATTGCAAGACTAGTAGCCG+AGG - chr7.3:46019457-46019476 MS.gene96580:intron 45.0%
TCAAATTGTGCAGCAATGGG+AGG + chr7.3:46020416-46020435 None:intergenic 45.0%
TCTATGGTCTCGTACTTGCA+AGG - chr7.3:46019556-46019575 MS.gene96580:CDS 45.0%
!! GAGTTATGGTGGACAAAGAG+AGG - chr7.3:46019357-46019376 MS.gene96580:CDS 45.0%
!! GGAGTGTTGCATATGCTTGA+AGG - chr7.3:46020287-46020306 MS.gene96580:intron 45.0%
!!! CTCAGATTTTCTGGTTGTGG+CGG + chr7.3:46019779-46019798 None:intergenic 45.0%
AAAGCCGTGGAGGATGACAT+TGG + chr7.3:46020689-46020708 None:intergenic 50.0%
AAAGCGACATCTGAAGGAGG+TGG - chr7.3:46020155-46020174 MS.gene96580:CDS 50.0%
AATTCCCACAGACGAAGTGC+TGG + chr7.3:46019661-46019680 None:intergenic 50.0%
AGCACTTCGTCTGTGGGAAT+TGG - chr7.3:46019660-46019679 MS.gene96580:CDS 50.0%
CTATCCAGCACTTCGTCTGT+GGG - chr7.3:46019654-46019673 MS.gene96580:CDS 50.0%
GCACTTCGTCTGTGGGAATT+GGG - chr7.3:46019661-46019680 MS.gene96580:CDS 50.0%
GCTTCTAACGCATCAAGTCG+TGG - chr7.3:46020608-46020627 MS.gene96580:CDS 50.0%
GTGGCGGTGGAGATAATACT+TGG + chr7.3:46019763-46019782 None:intergenic 50.0%
TATGCAACACTCCTCCTACG+GGG + chr7.3:46020280-46020299 None:intergenic 50.0%
TTTGTATGCTGAGGCAGGGA+AGG - chr7.3:46019388-46019407 MS.gene96580:CDS 50.0%
! AGCATGACTGAGTTGAGTCC+CGG - chr7.3:46020347-46020366 MS.gene96580:CDS 50.0%
! AGTTTTCTGACTCTCCCCGT+AGG - chr7.3:46020263-46020282 MS.gene96580:intron 50.0%
!! GGGTTTGTTAAGGAAACCGC+TGG - chr7.3:46019809-46019828 MS.gene96580:CDS 50.0%
!!! AGATTTTCTGGTTGTGGCGG+TGG + chr7.3:46019776-46019795 None:intergenic 50.0%
CCTATCCAGCACTTCGTCTG+TGG - chr7.3:46019653-46019672 MS.gene96580:CDS 55.0%
GGTGGGGAAGCTACTCCAAT+TGG + chr7.3:46020458-46020477 None:intergenic 55.0%
TTTCTGACTCTCCCCGTAGG+AGG - chr7.3:46020266-46020285 MS.gene96580:intron 55.0%
!! CCACAGACGAAGTGCTGGAT+AGG + chr7.3:46019656-46019675 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 46019332 46020974 46019332 ID=MS.gene96580
chr7.3 mRNA 46019332 46020974 46019332 ID=MS.gene96580.t1;Parent=MS.gene96580
chr7.3 exon 46020341 46020974 46020341 ID=MS.gene96580.t1.exon1;Parent=MS.gene96580.t1
chr7.3 CDS 46020341 46020974 46020341 ID=cds.MS.gene96580.t1;Parent=MS.gene96580.t1
chr7.3 exon 46019525 46020261 46019525 ID=MS.gene96580.t1.exon2;Parent=MS.gene96580.t1
chr7.3 CDS 46019525 46020261 46019525 ID=cds.MS.gene96580.t1;Parent=MS.gene96580.t1
chr7.3 exon 46019332 46019424 46019332 ID=MS.gene96580.t1.exon3;Parent=MS.gene96580.t1
chr7.3 CDS 46019332 46019424 46019332 ID=cds.MS.gene96580.t1;Parent=MS.gene96580.t1
Gene Sequence

>MS.gene96580

ATGGCAGCTGACAAAGTTACATTGAGAGTTATGGTGGACAAAGAGAGGAACAAAGTTTTGTATGCTGAGGCAGGGAAGGATTTTGTTGACGTTCTCTTCAGCTTCTTAACACTGCCTTTAGGTACTATTGCAAGACTAGTAGCCGAGGAGTCGAACATTGAAGATGTGAAATTTGGCACCATTAGCTCACTGTATCAGAGTGTGATAAATCTTGATGAACAATATCTATGGTCTCGTACTTGCAAGGAAATGCTACTCAAGCCAAGGAATTCCATGCAAGCTTATTGTCAGAAGATGAAACTGAATATCGACGACACAGAACCTATCCAGCACTTCGTCTGTGGGAATTGGGATTGTGTAAGAAAGGAAAGTGGGAACCTTTTGAGCTTATTTAGGAATCAATTGTGCAGTTGTGGAAGAGTAATGAACCAAGTATTATCTCCACCGCCACAACCAGAAAATCTGAGTTCAGGAATCGGGTTTGTTAAGGAAACCGCTGGATTTATTATTTCAGACGATCTTTATGTGATGCCTAATGTTTTTGGAACAGTTATACAACTACTTCACAAGCTGGAAATCTCTGATATTGGCGCTATTACAGAACAAACTGTTGATATCAGCAAGAAAGAGGCATGTTTTCTTATGAAGTTCTCATCTTAACTATATTGATTATTTGTTTTCTCCTTAATTATACTTATTTTTACAGGTTATAGATATTCTGAAGTTGTCATTGGTCTCAAAGAACCCTTTGACAGACTTCATCTTGAAAAAGAAATATTCTGAAGTTGTCAATGCTCTCAAAGATCCCATATTTCAGATTGAAAAAGCGACATCTGAAGGAGGTGGACAGATATCTGTGAAAGTAGTGAGAAGGAAATCAACTGGAGAGATTTTGTTTGCTGAAGGAGATGATTTTATTAACTTTATTTTCAGTTTTCTGACTCTCCCCGTAGGAGGAGTGTTGCATATGCTTGAAGGTTTATCTTCTATAAACTGCATTGATAATTTATACAAAAGCATGACTGAGTTGAGTCCCGGAAGTTATTTAATCTCAAAACATCTCAAAGAGAAACTAATTAGCCCTCCCATTGCTGCACAATTTGAGCTTGACAACCAAATAATTCCAATTGGAGTAGCTTCCCCACCTGTCTATTATTGTCATTCTTACATTTTTCATGGTCAATTTACTCGCGCACTAACTGCTTCGCACATGCATAATGCTTGGTATCCTGATGACAAGTTTGTACCTTTAAATTTGGTTGATCCTAAGCTATCTGCTTCTAACGCATCAAGTCGTGGAGAATTTGCAAAAGGGCCATCAGAATACATGGTAACAGTTGACTTAGCTATTAGTCCAATGTCATCCTCCACGGCTTTATCACATTTAAATAGTTCAAATGTTTCTGTAAATGATGTGGAAGAAAGGGTTATTAGAATTGGTCAGAAGGAGGTAAGCCACTTCGTAAGACTGTTGGTGTTTTTATTCTCCAGAATATATTTTCATTAATTTGCATGCATTGTTACAATGATTTGTTGTTAACATATTGCAGGGTCTCTGCATTCTAAAAGCTTGGATGAACTCAACGTTTGGTATGACAAATGGACTCAACCAATTCATAACAAACATTAAGGAGGAGAAATGA
Protein sequence

>MS.gene96580.t1

MAADKVTLRVMVDKERNKVLYAEAGKDFVDVLFSFLTLPLGTIARLVAEESNIEDVKFGTISSLYQSVINLDEQYLWSRTCKEMLLKPRNSMQAYCQKMKLNIDDTEPIQHFVCGNWDCVRKESGNLLSLFRNQLCSCGRVMNQVLSPPPQPENLSSGIGFVKETAGFIISDDLYVMPNVFGTVIQLLHKLEISDIGAITEQTVDISKKEAYILKLSLVSKNPLTDFILKKKYSEVVNALKDPIFQIEKATSEGGGQISVKVVRRKSTGEILFAEGDDFINFIFSFLTLPVGGVLHMLEGLSSINCIDNLYKSMTELSPGSYLISKHLKEKLISPPIAAQFELDNQIIPIGVASPPVYYCHSYIFHGQFTRALTASHMHNAWYPDDKFVPLNLVDPKLSASNASSRGEFAKGPSEYMVTVDLAISPMSSSTALSHLNSSNVSVNDVEERVIRIGQKEGLCILKAWMNSTFGMTNGLNQFITNIKEEK