AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46167

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46167.t1 MTR_7g062280 77.189 491 98 2 5 482 3 492 0.0 749
MS.gene46167.t1 MTR_7g062300 78.571 476 96 3 1 474 1 472 0.0 731
MS.gene46167.t1 MTR_7g063920 64.583 480 126 3 3 482 2 437 0.0 577
MS.gene46167.t1 MTR_7g063880 56.612 484 188 7 3 481 2 468 3.02e-171 490
MS.gene46167.t1 MTR_7g063840 54.757 473 208 4 10 482 8 474 7.00e-166 477
MS.gene46167.t1 MTR_7g063900 55.332 497 199 11 1 482 1 489 2.19e-165 476
MS.gene46167.t1 MTR_7g063820 54.004 487 211 7 5 482 3 485 8.26e-161 464
MS.gene46167.t1 MTR_7g063660 54.071 479 213 4 7 482 4 478 1.03e-160 464
MS.gene46167.t1 MTR_7g063830 53.830 483 182 9 1 481 1 444 3.98e-160 461
MS.gene46167.t1 MTR_3g007740 52.301 478 180 11 8 476 5 443 1.71e-147 429
MS.gene46167.t1 MTR_7g063670 52.165 485 181 9 10 482 13 458 1.20e-146 427
MS.gene46167.t1 MTR_7g063890 54.938 486 201 10 9 481 24 504 4.96e-145 425
MS.gene46167.t1 MTR_7g066570 41.212 495 256 9 4 479 6 484 2.84e-110 338
MS.gene46167.t1 MTR_7g066260 42.181 486 237 11 4 475 7 462 4.50e-107 327
MS.gene46167.t1 MTR_7g066430 41.296 494 257 9 13 481 5 490 1.38e-105 324
MS.gene46167.t1 MTR_7g066430 26.016 246 153 9 1 230 247 479 1.70e-13 72.8
MS.gene46167.t1 MTR_7g066410 38.772 521 268 11 1 477 1 514 3.16e-104 321
MS.gene46167.t1 MTR_3g065200 41.921 458 207 12 12 462 3 408 6.06e-98 303
MS.gene46167.t1 MTR_7g066480 39.203 477 208 9 12 476 16 422 4.74e-97 299
MS.gene46167.t1 MTR_7g066480 27.426 237 150 8 243 469 6 230 5.73e-11 64.7
MS.gene46167.t1 MTR_7g058710 36.505 515 263 12 1 482 1 484 6.27e-97 301
MS.gene46167.t1 MTR_7g066350 38.994 477 244 8 13 477 10 451 9.94e-95 294
MS.gene46167.t1 MTR_7g066350 30.222 225 140 6 256 469 9 227 4.52e-16 80.9
MS.gene46167.t1 MTR_7g012680 39.192 495 237 10 4 482 6 452 2.97e-94 293
MS.gene46167.t1 MTR_7g066340 36.382 492 257 8 1 475 1 453 7.36e-92 287
MS.gene46167.t1 MTR_7g066360 39.754 488 230 13 2 471 4 445 3.34e-91 286
MS.gene46167.t1 MTR_7g066580 37.449 486 241 10 18 478 1 448 1.49e-90 283
MS.gene46167.t1 MTR_7g066580 28.205 234 144 9 11 229 214 438 4.31e-11 65.1
MS.gene46167.t1 MTR_7g066290 38.351 485 230 10 3 475 6 433 1.50e-90 283
MS.gene46167.t1 MTR_1g041315 35.967 481 250 10 3 459 5 451 5.76e-86 273
MS.gene46167.t1 MTR_7g066490 37.131 474 206 10 12 475 16 407 4.26e-85 268
MS.gene46167.t1 MTR_7g066400 35.425 494 247 12 1 477 1 439 5.62e-85 269
MS.gene46167.t1 MTR_7g062270 67.742 186 58 2 3 188 2 185 3.23e-82 259
MS.gene46167.t1 MTR_7g063720 52.419 248 101 4 236 482 2 233 2.82e-79 247
MS.gene46167.t1 MTR_7g063720 29.148 223 123 9 15 230 26 220 7.35e-17 80.5
MS.gene46167.t1 MTR_4g019310 34.442 511 286 14 6 482 2 497 1.98e-76 248
MS.gene46167.t1 MTR_7g058700 35.073 479 210 10 24 482 531 928 4.35e-74 251
MS.gene46167.t1 MTR_7g066310 33.974 468 214 10 12 475 7 383 1.56e-70 230
MS.gene46167.t1 MTR_7g063850 45.603 307 140 9 183 481 1 288 7.52e-68 219
MS.gene46167.t1 MTR_2g029400 32.143 476 235 8 2 464 4 404 4.54e-65 216
MS.gene46167.t1 MTR_4g017830 32.190 525 294 18 1 481 1 507 4.93e-61 208
MS.gene46167.t1 MTR_4g017410 31.569 529 268 18 6 481 3 490 1.63e-56 196
MS.gene46167.t1 MTR_4g017410 29.032 248 151 5 257 482 10 254 3.29e-14 75.1
MS.gene46167.t1 MTR_7g100420 40.717 307 166 6 169 471 99 393 2.01e-55 190
MS.gene46167.t1 MTR_7g100420 64.815 54 17 1 2 55 31 82 1.56e-12 69.7
MS.gene46167.t1 MTR_4g019340 30.675 489 283 13 9 463 35 501 2.79e-52 184
MS.gene46167.t1 MTR_7g066280 32.678 407 235 9 91 475 1 390 4.78e-51 179
MS.gene46167.t1 MTR_7g066280 26.639 244 145 8 12 230 150 384 1.05e-13 73.2
MS.gene46167.t1 MTR_4g017470 27.704 527 284 14 1 481 1 476 1.12e-48 174
MS.gene46167.t1 MTR_4g017610 30.891 505 285 18 1 471 1 475 3.05e-48 173
MS.gene46167.t1 MTR_4g017610 27.801 241 151 5 259 481 16 251 1.26e-13 73.2
MS.gene46167.t1 MTR_4g017440 29.264 516 310 17 6 481 8 508 3.91e-48 173
MS.gene46167.t1 MTR_1g014060 44.390 205 109 4 21 223 9 210 1.18e-46 166
MS.gene46167.t1 MTR_1g014060 38.071 197 107 3 286 482 210 391 1.08e-30 123
MS.gene46167.t1 MTR_1g014060 28.125 224 130 6 269 475 13 222 1.74e-15 78.6
MS.gene46167.t1 MTR_8g023240 28.238 471 299 14 13 469 38 483 1.83e-43 161
MS.gene46167.t1 MTR_7g066680 34.091 308 144 6 213 471 37 334 7.77e-40 147
MS.gene46167.t1 MTR_7g066680 24.786 234 132 8 2 215 77 286 3.77e-12 67.8
MS.gene46167.t1 MTR_4g017550 28.903 474 268 17 42 471 21 469 6.15e-35 136
MS.gene46167.t1 MTR_4g017550 30.556 180 102 6 15 180 250 420 1.53e-12 69.7
MS.gene46167.t1 MTR_7g063690 48.592 142 71 2 144 283 81 222 6.89e-34 128
MS.gene46167.t1 MTR_7g063690 65.000 60 20 1 3 61 2 61 3.37e-15 75.5
MS.gene46167.t1 MTR_8g445860 32.932 249 134 9 3 236 8 238 2.16e-24 102
MS.gene46167.t1 MTR_8g445860 27.391 230 139 7 256 468 13 231 5.64e-16 77.8
MS.gene46167.t1 MTR_7g063760 58.108 74 30 1 410 482 1 74 8.67e-23 92.0
MS.gene46167.t1 MTR_1g115440 31.200 250 145 8 1 235 1 238 4.69e-21 92.4
MS.gene46167.t1 MTR_1g115440 28.750 240 128 8 256 469 11 233 2.34e-19 87.4
MS.gene46167.t1 MTR_0150s0010 30.579 242 150 7 5 235 3 237 5.41e-20 89.4
MS.gene46167.t1 MTR_2g067310 35.632 174 68 5 12 181 43 176 1.82e-17 82.0
MS.gene46167.t1 MTR_7g066390 56.522 69 30 0 403 471 50 118 3.03e-17 79.3
MS.gene46167.t1 MTR_1g115455 27.600 250 150 8 1 236 1 233 4.81e-15 75.1
MS.gene46167.t1 MTR_7g063870 58.929 56 23 0 6 61 25 80 3.00e-14 73.2
MS.gene46167.t1 MTR_7g063870 53.333 60 28 0 161 220 98 157 7.54e-12 65.9
MS.gene46167.t1 MTR_4g019240 37.273 110 59 3 11 112 12 119 9.55e-12 64.3
MS.gene46167.t1 MTR_1g115450 40.860 93 46 3 3 95 2 85 7.25e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46167.t1 AT3G09140 32.809 509 279 14 11 477 8 495 1.94e-64 217
MS.gene46167.t1 AT5G01120 32.389 494 287 11 13 474 10 488 6.72e-61 207
MS.gene46167.t1 AT3G09140 31.099 537 279 15 11 477 8 523 2.77e-59 204
MS.gene46167.t1 AT5G01150 29.880 502 306 11 7 481 4 486 2.17e-58 201
MS.gene46167.t1 AT5G01130 30.612 490 284 13 7 482 4 451 2.71e-55 191
MS.gene46167.t1 AT3G09110 36.076 316 180 7 15 317 12 318 1.53e-53 184
MS.gene46167.t1 AT5G01140 29.124 491 295 12 7 481 4 457 9.75e-50 177
MS.gene46167.t1 AT5G43240 29.899 495 296 10 13 471 10 489 3.02e-48 174
MS.gene46167.t1 AT5G43240 29.899 495 296 10 13 471 10 489 3.02e-48 174
MS.gene46167.t1 AT5G43240 29.899 495 296 10 13 471 10 489 3.02e-48 174
MS.gene46167.t1 AT3G09120 36.000 325 174 10 7 310 2 313 9.59e-46 162
MS.gene46167.t1 AT3G09120 29.185 233 137 8 256 469 6 229 4.34e-13 70.5
MS.gene46167.t1 AT5G37320 29.447 506 281 18 17 480 13 484 1.65e-37 144
MS.gene46167.t1 AT5G43240 26.994 326 205 6 168 471 31 345 8.66e-18 85.5

Find 84 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCGAATATT+TGG 0.132360 7.2:+40242440 MS.gene46167:CDS
ATCCTTCGGGGAGAGGTTTA+AGG 0.199576 7.2:-40241950 None:intergenic
CTCCCCGAAGGATTTGTTAA+TGG 0.264468 7.2:+40241960 MS.gene46167:CDS
TAACTAGCTTCAGAATGATT+TGG 0.271516 7.2:-40242331 None:intergenic
TTTAATCTGTTCACGGAGTT+TGG 0.282622 7.2:+40242047 MS.gene46167:CDS
GTCAATACAGTTTGGCTTGA+TGG 0.284902 7.2:-40242015 None:intergenic
CATCCGATGATGTCAAATAT+TGG 0.288315 7.2:-40242526 None:intergenic
GGGAGAGGTTTAAGGAAAAT+TGG 0.296810 7.2:-40241942 None:intergenic
TGTGAGCCAAACCATTTGTT+AGG 0.308515 7.2:-40243049 None:intergenic
CCATTTCTGTTACCGAACTA+TGG 0.317259 7.2:-40242079 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7.2:+40242496 MS.gene46167:CDS
AGTAAATCCAAAGCTGAAAT+TGG 0.320504 7.2:-40242836 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.360795 7.2:+40242829 MS.gene46167:CDS
CTTGTATAGTCAATACAGTT+TGG 0.367447 7.2:-40242023 None:intergenic
CCTGGTGTTCATGAATATTA+TGG 0.375168 7.2:+40242623 MS.gene46167:CDS
TACGTTGATGCGATCATATC+CGG 0.377785 7.2:-40241876 None:intergenic
TTCTGCCCTAACAAATGGTT+TGG 0.386717 7.2:+40243043 MS.gene46167:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.2:+40241623 MS.gene46167:CDS
AACTCCCCTTAATGATTTGA+AGG 0.395649 7.2:+40242871 MS.gene46167:CDS
TTATCTAATGTGATGATTCC+TGG 0.396168 7.2:+40242746 MS.gene46167:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.403627 7.2:-40241526 None:intergenic
TGTTCCTTGGGAAGCATCAA+TGG 0.408006 7.2:+40242470 MS.gene46167:CDS
CGAGATATGTAACTAATTTG+AGG 0.410701 7.2:+40242714 MS.gene46167:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.2:+40241606 MS.gene46167:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.2:+40241558 MS.gene46167:CDS
ATTTGGAGGGACTTGTTCCT+TGG 0.422042 7.2:+40242457 MS.gene46167:CDS
TAATCTTCGGCTGAGTTGAT+TGG 0.425110 7.2:-40241768 None:intergenic
TCTGTAGCAAAATACATATC+TGG 0.428362 7.2:-40242788 None:intergenic
TCACATGTTAACTGAAGTTA+AGG 0.428371 7.2:+40243067 MS.gene46167:CDS
ACACCATTAACAAATCCTTC+GGG 0.433848 7.2:-40241963 None:intergenic
GTAGTGTCTTAACATATTGA+AGG 0.434262 7.2:+40243004 MS.gene46167:intron
AACCATCCCTTGAGAGATCA+AGG 0.434730 7.2:+40242273 MS.gene46167:CDS
TACACCATTAACAAATCCTT+CGG 0.434973 7.2:-40241964 None:intergenic
CCATAGTTCGGTAACAGAAA+TGG 0.437481 7.2:+40242079 MS.gene46167:CDS
TCAACTTCTGCCCTAACAAA+TGG 0.441842 7.2:+40243038 MS.gene46167:CDS
CCTGGTGATGGTTATGTAAA+GGG 0.442731 7.2:+40242764 MS.gene46167:CDS
TGAACACCAGGATCAAGAAT+TGG 0.448075 7.2:-40242611 None:intergenic
TCTGAATGTCACTAAAGAAA+AGG 0.453648 7.2:+40242103 MS.gene46167:CDS
ATATTACCAATTCTTGATCC+TGG 0.456535 7.2:+40242605 MS.gene46167:CDS
TACAAGCTTTAATCTGTTCA+CGG 0.462133 7.2:+40242040 MS.gene46167:CDS
AAGAGCGCTGCAATAATCTT+CGG 0.463496 7.2:-40241781 None:intergenic
TTTAACTGCGAGGCAATGTA+AGG 0.480339 7.2:-40242569 None:intergenic
AGCATAGGGCAAGTTACATT+CGG 0.484689 7.2:+40241660 MS.gene46167:CDS
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7.2:-40242827 None:intergenic
TTTGGAGGGACTTGTTCCTT+GGG 0.497730 7.2:+40242458 MS.gene46167:CDS
AACAAGTTATTGTATGCTCA+AGG 0.499394 7.2:+40242368 MS.gene46167:CDS
GAAATCTGTCAAGGTTGACT+TGG 0.503107 7.2:-40242237 None:intergenic
TTAACAAATCCTTCGGGGAG+AGG 0.506746 7.2:-40241957 None:intergenic
CTCTAATGTCTGCTATGCTC+CGG 0.516848 7.2:+40241857 MS.gene46167:CDS
GTGAGCCAAACCATTTGTTA+GGG 0.517645 7.2:-40243048 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.2:+40242537 MS.gene46167:CDS
AACCTTGATCTCTCAAGGGA+TGG 0.520022 7.2:-40242275 None:intergenic
AGTTGTCACTATTGGCATCA+AGG 0.520473 7.2:+40242898 MS.gene46167:CDS
AGCATAGCAGACATTAGAGT+TGG 0.526288 7.2:-40241853 None:intergenic
GGAATTGTTCGAATATTTGG+AGG 0.527551 7.2:+40242443 MS.gene46167:CDS
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.2:+40241563 MS.gene46167:CDS
GCGCATGTGAAGTACTTTGT+TGG 0.540167 7.2:-40241828 None:intergenic
TTCCTTAAACCTCTCCCCGA+AGG 0.546449 7.2:+40241948 MS.gene46167:CDS
TTTCTTACATATCCTTTGGG+TGG 0.551503 7.2:+40242422 MS.gene46167:CDS
CCATAATATTCATGAACACC+AGG 0.552460 7.2:-40242623 None:intergenic
TCCTGGTGATGGTTATGTAA+AGG 0.556342 7.2:+40242763 MS.gene46167:CDS
TGATGAAGGCTGTATGTCTA+CGG 0.561304 7.2:+40241719 MS.gene46167:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7.2:+40242523 MS.gene46167:CDS
TCGTTCAAAAGAAGTTTCAA+GGG 0.570431 7.2:-40241525 None:intergenic
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.2:+40241559 MS.gene46167:CDS
CCCTTTACATAACCATCACC+AGG 0.576971 7.2:-40242764 None:intergenic
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.2:+40241632 MS.gene46167:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.2:-40241621 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.2:+40241646 MS.gene46167:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.2:+40241645 MS.gene46167:CDS
CATGTTAACTGAAGTTAAGG+AGG 0.596174 7.2:+40243070 MS.gene46167:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.2:-40241631 None:intergenic
GAATTGTTCGAATATTTGGA+GGG 0.598800 7.2:+40242444 MS.gene46167:CDS
CAATCCATTGATGCTTCCCA+AGG 0.636233 7.2:-40242474 None:intergenic
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.2:-40242434 None:intergenic
ACAAGTTATTGTATGCTCAA+GGG 0.641517 7.2:+40242369 MS.gene46167:CDS
AATGTGATGATTCCTGGTGA+TGG 0.650008 7.2:+40242752 MS.gene46167:CDS
GATAAATATAAATGTCAGTG+TGG 0.654651 7.2:+40241903 MS.gene46167:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.2:+40241689 MS.gene46167:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.665549 7.2:+40241705 MS.gene46167:CDS
CTTGCTTAACTTTAACTGCG+AGG 0.679997 7.2:-40242579 None:intergenic
CACCATTAACAAATCCTTCG+GGG 0.680088 7.2:-40241962 None:intergenic
TGAAGGCTGTATGTCTACGG+AGG 0.712068 7.2:+40241722 MS.gene46167:CDS
TGTCACTATTGGCATCAAGG+AGG 0.742676 7.2:+40242901 MS.gene46167:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTTCAAATCATTAA+GGG - chr7.2:40242879-40242898 None:intergenic 20.0%
! AAACCAATATTTGACATCAT+CGG + chr7.2:40242523-40242542 MS.gene46167:CDS 25.0%
! GATAAATATAAATGTCAGTG+TGG + chr7.2:40241903-40241922 MS.gene46167:CDS 25.0%
!! AAGTTTTCTTACATATCCTT+TGG + chr7.2:40242418-40242437 MS.gene46167:CDS 25.0%
!! AGTTTTCTTACATATCCTTT+GGG + chr7.2:40242419-40242438 MS.gene46167:CDS 25.0%
!! CATTTTCAAATTCTCAAATC+TGG + chr7.2:40242683-40242702 MS.gene46167:CDS 25.0%
!! CTTTTTCCTTCAAATCATTA+AGG - chr7.2:40242880-40242899 None:intergenic 25.0%
!! TAACTACTACTGTTTTATAC+AGG + chr7.2:40242184-40242203 MS.gene46167:intron 25.0%
!! TTTTCCTTCAAATCATTAAG+GGG - chr7.2:40242878-40242897 None:intergenic 25.0%
AACAAGTTATTGTATGCTCA+AGG + chr7.2:40242368-40242387 MS.gene46167:CDS 30.0%
AAGGAAAAAGTTGTCACTAT+TGG + chr7.2:40242890-40242909 MS.gene46167:CDS 30.0%
ACAAGTTATTGTATGCTCAA+GGG + chr7.2:40242369-40242388 MS.gene46167:CDS 30.0%
AGTAAATCCAAAGCTGAAAT+TGG - chr7.2:40242839-40242858 None:intergenic 30.0%
ATATTACCAATTCTTGATCC+TGG + chr7.2:40242605-40242624 MS.gene46167:CDS 30.0%
CGAGATATGTAACTAATTTG+AGG + chr7.2:40242714-40242733 MS.gene46167:CDS 30.0%
CTTGTATAGTCAATACAGTT+TGG - chr7.2:40242026-40242045 None:intergenic 30.0%
GAATTGTTCGAATATTTGGA+GGG + chr7.2:40242444-40242463 MS.gene46167:CDS 30.0%
GTAGTGTCTTAACATATTGA+AGG + chr7.2:40243004-40243023 MS.gene46167:intron 30.0%
TACACCATTAACAAATCCTT+CGG - chr7.2:40241967-40241986 None:intergenic 30.0%
TCACATGTTAACTGAAGTTA+AGG + chr7.2:40243067-40243086 MS.gene46167:CDS 30.0%
TCGTTCAAAAGAAGTTTCAA+GGG - chr7.2:40241528-40241547 None:intergenic 30.0%
TCTGAATGTCACTAAAGAAA+AGG + chr7.2:40242103-40242122 MS.gene46167:CDS 30.0%
TCTGTAGCAAAATACATATC+TGG - chr7.2:40242791-40242810 None:intergenic 30.0%
TGGCATAAAAAACCATAGTT+CGG + chr7.2:40242067-40242086 MS.gene46167:CDS 30.0%
TTATCTAATGTGATGATTCC+TGG + chr7.2:40242746-40242765 MS.gene46167:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG - chr7.2:40241529-40241548 None:intergenic 30.0%
! ACCTTGACAGATTTCTTTTT+AGG + chr7.2:40242245-40242264 MS.gene46167:CDS 30.0%
! CCTTGACAGATTTCTTTTTA+GGG + chr7.2:40242246-40242265 MS.gene46167:CDS 30.0%
! GTACAAGAGTATAGTTGATT+TGG + chr7.2:40242496-40242515 MS.gene46167:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG + chr7.2:40242796-40242815 MS.gene46167:CDS 30.0%
! TAACTAGCTTCAGAATGATT+TGG - chr7.2:40242334-40242353 None:intergenic 30.0%
! TACAAGCTTTAATCTGTTCA+CGG + chr7.2:40242040-40242059 MS.gene46167:CDS 30.0%
AAACTCACTCTATAGAAGTG+TGG + chr7.2:40241689-40241708 MS.gene46167:CDS 35.0%
AAAGCTGAAATTGGAGTCAA+TGG - chr7.2:40242830-40242849 None:intergenic 35.0%
AACTCCCCTTAATGATTTGA+AGG + chr7.2:40242871-40242890 MS.gene46167:CDS 35.0%
ACACCATTAACAAATCCTTC+GGG - chr7.2:40241966-40241985 None:intergenic 35.0%
AGAAAAACCTTGATCTCTCA+AGG - chr7.2:40242283-40242302 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG + chr7.2:40241606-40241625 MS.gene46167:CDS 35.0%
CATCCGATGATGTCAAATAT+TGG - chr7.2:40242529-40242548 None:intergenic 35.0%
CATGTTAACTGAAGTTAAGG+AGG + chr7.2:40243070-40243089 MS.gene46167:CDS 35.0%
CCATAATATTCATGAACACC+AGG - chr7.2:40242626-40242645 None:intergenic 35.0%
CCCTAAAAAGAAATCTGTCA+AGG - chr7.2:40242249-40242268 None:intergenic 35.0%
CCTGGTGTTCATGAATATTA+TGG + chr7.2:40242623-40242642 MS.gene46167:CDS 35.0%
GAAAAACCTTGATCTCTCAA+GGG - chr7.2:40242282-40242301 None:intergenic 35.0%
GGAATTGTTCGAATATTTGG+AGG + chr7.2:40242443-40242462 MS.gene46167:CDS 35.0%
GGTGGAATTGTTCGAATATT+TGG + chr7.2:40242440-40242459 MS.gene46167:CDS 35.0%
TAGAGAAGGAATCTAGCATA+GGG + chr7.2:40241646-40241665 MS.gene46167:CDS 35.0%
TTTAATCTGTTCACGGAGTT+TGG + chr7.2:40242047-40242066 MS.gene46167:CDS 35.0%
TTTCTTACATATCCTTTGGG+TGG + chr7.2:40242422-40242441 MS.gene46167:CDS 35.0%
! ATTGACTCCAATTTCAGCTT+TGG + chr7.2:40242829-40242848 MS.gene46167:CDS 35.0%
! CATTAAGGGGAGTTTTCAAT+CGG - chr7.2:40242865-40242884 None:intergenic 35.0%
AATCTCGCAATGGTTCCTAA+AGG - chr7.2:40241624-40241643 None:intergenic 40.0%
AATGTGATGATTCCTGGTGA+TGG + chr7.2:40242752-40242771 MS.gene46167:CDS 40.0%
AGCATAGCAGACATTAGAGT+TGG - chr7.2:40241856-40241875 None:intergenic 40.0%
AGCATAGGGCAAGTTACATT+CGG + chr7.2:40241660-40241679 MS.gene46167:CDS 40.0%
AGTTGTCACTATTGGCATCA+AGG + chr7.2:40242898-40242917 MS.gene46167:CDS 40.0%
ATTCGAACAATTCCACCCAA+AGG - chr7.2:40242437-40242456 None:intergenic 40.0%
CACCATTAACAAATCCTTCG+GGG - chr7.2:40241965-40241984 None:intergenic 40.0%
CCATAGTTCGGTAACAGAAA+TGG + chr7.2:40242079-40242098 MS.gene46167:CDS 40.0%
CCATTTCTGTTACCGAACTA+TGG - chr7.2:40242082-40242101 None:intergenic 40.0%
CTTGCTTAACTTTAACTGCG+AGG - chr7.2:40242582-40242601 None:intergenic 40.0%
GAAATCTGTCAAGGTTGACT+TGG - chr7.2:40242240-40242259 None:intergenic 40.0%
GGGAGAGGTTTAAGGAAAAT+TGG - chr7.2:40241945-40241964 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG + chr7.2:40241645-40241664 MS.gene46167:CDS 40.0%
TACGTTGATGCGATCATATC+CGG - chr7.2:40241879-40241898 None:intergenic 40.0%
TCAACTTCTGCCCTAACAAA+TGG + chr7.2:40243038-40243057 MS.gene46167:CDS 40.0%
TGAACACCAGGATCAAGAAT+TGG - chr7.2:40242614-40242633 None:intergenic 40.0%
TGATGAAGGCTGTATGTCTA+CGG + chr7.2:40241719-40241738 MS.gene46167:CDS 40.0%
TGTGAGCCAAACCATTTGTT+AGG - chr7.2:40243052-40243071 None:intergenic 40.0%
TTCTGCCCTAACAAATGGTT+TGG + chr7.2:40243043-40243062 MS.gene46167:CDS 40.0%
TTTAACTGCGAGGCAATGTA+AGG - chr7.2:40242572-40242591 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG + chr7.2:40241623-40241642 MS.gene46167:CDS 40.0%
! GTGAGCCAAACCATTTGTTA+GGG - chr7.2:40243051-40243070 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG + chr7.2:40241558-40241577 MS.gene46167:CDS 40.0%
!! AAGAGCGCTGCAATAATCTT+CGG - chr7.2:40241784-40241803 None:intergenic 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG + chr7.2:40241559-40241578 MS.gene46167:CDS 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG + chr7.2:40242764-40242783 MS.gene46167:CDS 40.0%
!! GTCAATACAGTTTGGCTTGA+TGG - chr7.2:40242018-40242037 None:intergenic 40.0%
!! TAATCTTCGGCTGAGTTGAT+TGG - chr7.2:40241771-40241790 None:intergenic 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG + chr7.2:40242763-40242782 MS.gene46167:CDS 40.0%
AACCATCCCTTGAGAGATCA+AGG + chr7.2:40242273-40242292 MS.gene46167:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG - chr7.2:40242278-40242297 None:intergenic 45.0%
AGTGTGGCAGATCTTGATGA+AGG + chr7.2:40241705-40241724 MS.gene46167:CDS 45.0%
CAATCCATTGATGCTTCCCA+AGG - chr7.2:40242477-40242496 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG + chr7.2:40242537-40242556 MS.gene46167:CDS 45.0%
CATTGCGAGATTGGTAGAGA+AGG + chr7.2:40241632-40241651 MS.gene46167:CDS 45.0%
CCCTTTACATAACCATCACC+AGG - chr7.2:40242767-40242786 None:intergenic 45.0%
CTCTAATGTCTGCTATGCTC+CGG + chr7.2:40241857-40241876 MS.gene46167:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG - chr7.2:40241634-40241653 None:intergenic 45.0%
TGTCACTATTGGCATCAAGG+AGG + chr7.2:40242901-40242920 MS.gene46167:CDS 45.0%
TTAACAAATCCTTCGGGGAG+AGG - chr7.2:40241960-40241979 None:intergenic 45.0%
! ATTTGGAGGGACTTGTTCCT+TGG + chr7.2:40242457-40242476 MS.gene46167:CDS 45.0%
! GCGCATGTGAAGTACTTTGT+TGG - chr7.2:40241831-40241850 None:intergenic 45.0%
! TTTGGAGGGACTTGTTCCTT+GGG + chr7.2:40242458-40242477 MS.gene46167:CDS 45.0%
!! CTCCCCGAAGGATTTGTTAA+TGG + chr7.2:40241960-40241979 MS.gene46167:CDS 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG + chr7.2:40242470-40242489 MS.gene46167:CDS 45.0%
ATCCTTCGGGGAGAGGTTTA+AGG - chr7.2:40241953-40241972 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG + chr7.2:40241563-40241582 MS.gene46167:CDS 50.0%
TGAAGGCTGTATGTCTACGG+AGG + chr7.2:40241722-40241741 MS.gene46167:CDS 50.0%
TTCCTTAAACCTCTCCCCGA+AGG + chr7.2:40241948-40241967 MS.gene46167:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 40241486 40243100 40241486 ID=MS.gene46167
chr7.2 mRNA 40241486 40243100 40241486 ID=MS.gene46167.t1;Parent=MS.gene46167
chr7.2 exon 40241486 40242124 40241486 ID=MS.gene46167.t1.exon1;Parent=MS.gene46167.t1
chr7.2 CDS 40241486 40242124 40241486 ID=cds.MS.gene46167.t1;Parent=MS.gene46167.t1
chr7.2 exon 40242206 40242922 40242206 ID=MS.gene46167.t1.exon2;Parent=MS.gene46167.t1
chr7.2 CDS 40242206 40242922 40242206 ID=cds.MS.gene46167.t1;Parent=MS.gene46167.t1
chr7.2 exon 40243008 40243100 40243008 ID=MS.gene46167.t1.exon3;Parent=MS.gene46167.t1
chr7.2 CDS 40243008 40243100 40243008 ID=cds.MS.gene46167.t1;Parent=MS.gene46167.t1
Gene Sequence

>MS.gene46167

ATGGGTGCTACTACTTCTACTCAAGCAGAGAAGCATGTGCCCTTGAAACTTCTTTTGAACGAAAATGATAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTCGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACATTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGCTGTATGTCTACGGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCCGAAGATTATTGCAGCGCTCTTAAATTCAACATCGATGACACTCAACCAACAAAGTACTTCACATGCGCTGCCAACTCTAATGTCTGCTATGCTCCGGATATGATCGCATCAACGTATAAAGATAAATATAAATGTCAGTGTGGTCGTTCTTTTAGACTTCCAATTTTCCTTAAACCTCTCCCCGAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACCATCAAGCCAAACTGTATTGACTATACAAGCTTTAATCTGTTCACGGAGTTTGGCATAAAAAACCATAGTTCGGTAACAGAAATGGTTCTGAATGTCACTAAAGAAAAGGTTTTGTATTTGAATACTGCGTTTGTTTATAACATCTCTCTTAAATTTTTGATTGATTATAACTACTACTGTTTTATACAGGTACTTGATTTGCTAAAGTGTTCTTTGTTTTCCAAGTCAACCTTGACAGATTTCTTTTTAGGGAAGAAACCATCCCTTGAGAGATCAAGGTTTTTCTCGTGTGATTTTAAAATTGTTAATGATATCCAAATCATTCTGAAGCTAGTTATAAGAAAATCAGATAACAAGTTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATATCCTTTGGGTGGAATTGTTCGAATATTTGGAGGGACTTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTCATCCTTACATTGCCTCGCAGTTAAAGTTAAGCAAGAAGATATTACCAATTCTTGATCCTGGTGTTCATGAATATTATGGTGATTTTAAAAGTTCTGCTAACAGTAATAATATAATTCATTTTCAAATTCTCAAATCTGGAATAGATTCGAGATATGTAACTAATTTGAGGAAAATGAATTTATCTAATGTGATGATTCCTGGTGATGGTTATGTAAAGGGTCCAGATATGTATTTTGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGATTTACTTAACCGATTGAAAACTCCCCTTAATGATTTGAAGGAAAAAGTTGTCACTATTGGCATCAAGGAGGTAAATGCATAGTAAAATTCTTAATATAGTTTTAATCTTTACATTATTATAAATTGCTTATGTTTATCTTCTTGTCTTGTTGTAGTGTCTTAACATATTGAAGGCTTCTTTGACATCAACTTCTGCCCTAACAAATGGTTTGGCTCACATGTTAACTGAAGTTAAGGAGGAGAGATGA
Protein sequence

>MS.gene46167.t1

MGATTSTQAEKHVPLKLLLNENDNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTFGCLNSLYRSVADLDEGCMSTEAIKQMLLQPINSAEDYCSALKFNIDDTQPTKYFTCAANSNVCYAPDMIASTYKDKYKCQCGRSFRLPIFLKPLPEGFVNGVATFVITDDLTIKPNCIDYTSFNLFTEFGIKNHSSVTEMVLNVTKEKVLDLLKCSLFSKSTLTDFFLGKKPSLERSRFFSCDFKIVNDIQIILKLVIRKSDNKLLYAQGQQDFANLLLSFLTYPLGGIVRIFGGTCSLGSINGLYKSIVDLDENQYLTSSDAKNRLVHPYIASQLKLSKKILPILDPGVHEYYGDFKSSANSNNIIHFQILKSGIDSRYVTNLRKMNLSNVMIPGDGYVKGPDMYFATDDLVVAPLTPISALDLLNRLKTPLNDLKEKVVTIGIKECLNILKASLTSTSALTNGLAHMLTEVKEER