AlfalfaGEDB | MS.gene055263

M. sativa cultivar XinJiangDaYe / MS.gene055263

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055263.t1	XP_013448889.1	84.1	327	41	1	4	319	2	328	2.10E-147	531.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055263.t1	A0A072U0J4	84.1	327	41	1	4	319	2	328	1.5e-147	531.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene055263	PPI
MS.gene001108	MS.gene055263	PPI
MS.gene001109	MS.gene055263	PPI
MS.gene007488	MS.gene055263	PPI
MS.gene009400	MS.gene055263	PPI
MS.gene010675	MS.gene055263	PPI
MS.gene037535	MS.gene055263	PPI
MS.gene037540	MS.gene055263	PPI
MS.gene037545	MS.gene055263	PPI
MS.gene037548	MS.gene055263	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055263.t1	MTR_7g062300	84.098	327	41	1	4	319	2	328	0.0	541
MS.gene055263.t1	MTR_7g062300	30.631	222	130	7	14	221	256	467	1.36e-13	71.6
MS.gene055263.t1	MTR_7g062280	78.932	337	46	3	7	319	3	338	0.0	513
MS.gene055263.t1	MTR_7g062280	30.222	225	129	7	14	221	266	479	8.51e-17	81.3
MS.gene055263.t1	MTR_7g063920	63.190	326	71	2	5	319	2	289	2.34e-132	384
MS.gene055263.t1	MTR_7g063830	59.385	325	119	3	7	319	3	326	5.06e-127	371
MS.gene055263.t1	MTR_7g063900	56.268	343	126	5	1	331	1	331	5.35e-121	357
MS.gene055263.t1	MTR_7g063900	28.571	217	114	9	15	206	253	453	1.48e-13	71.6
MS.gene055263.t1	MTR_7g063880	60.000	320	99	5	5	309	2	307	3.70e-118	349
MS.gene055263.t1	MTR_7g063880	30.357	224	127	6	14	221	246	456	8.99e-13	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055263.t1	AT3G09110	34.891	321	168	7	16	308	11	318	9.76e-56	185
MS.gene055263.t1	AT3G09120	36.420	324	156	9	13	301	5	313	9.77e-52	174
MS.gene055263.t1	AT3G09140	35.207	338	173	7	13	309	8	340	1.48e-51	178
MS.gene055263.t1	AT3G09140	24.896	241	127	7	13	225	277	491	1.71e-12	68.6
MS.gene055263.t1	AT5G01120	35.758	330	165	7	15	308	10	328	4.34e-48	169
MS.gene055263.t1	AT5G01150	32.945	343	183	6	9	317	4	333	9.86e-47	165
MS.gene055263.t1	AT3G09140	32.514	366	173	8	13	309	8	368	2.01e-46	165
MS.gene055263.t1	AT3G09140	24.896	241	127	7	13	225	305	519	2.35e-12	68.2
MS.gene055263.t1	AT5G01130	33.036	336	189	8	9	321	4	326	4.44e-44	157
MS.gene055263.t1	AT5G43240	32.099	324	186	5	15	308	10	329	1.93e-37	140

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Find 61 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACTCTATAAAAGTG+TGG	0.625241	7.4:-41494023	MS.gene055263:CDS
AAAGTCTTGTTTGCAGAAGC+AGG	0.413091	7.4:-41494154	MS.gene055263:CDS
AAATAAATCTTGATCTCTCA+AGG	0.483684	7.4:+41493476	None:intergenic
AACAAGGTATTGTATGCTCA+AGG	0.515072	7.4:-41493388	MS.gene055263:CDS
AAGTCTTGTTTGCAGAAGCA+GGG	0.574475	7.4:-41494153	MS.gene055263:CDS
AATAAATCTTGATCTCTCAA+GGG	0.605224	7.4:+41493477	None:intergenic
AATCTCGCAATGGTTCCTAA+AGG	0.583079	7.4:+41494091	None:intergenic
AATCTTGATCTCTCAAGGGA+TGG	0.572575	7.4:+41493481	None:intergenic
ACAAGGTATTGTATGCTCAA+GGG	0.641517	7.4:-41493387	MS.gene055263:CDS
ACATGCGCTGCCAACTCTAA+TGG	0.404291	7.4:-41493869	MS.gene055263:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCACTCTATAAAAGTG+TGG	-	chr7.4:41493395-41493414	MS.gene055263:CDS	30.0%
CAAATCTGTCAAACTTGATT+TGG	+	chr7.4:41493902-41493921	None:intergenic	30.0%
CATACGATGATGTCAAATAT+TGG	+	chr7.4:41494191-41494210	None:intergenic	30.0%
GAATTGTTCGAATATTTGGT+GGG	-	chr7.4:41494106-41494125	MS.gene055263:CDS	30.0%
TTCGTTCAAAAGAAGTTTCA+AGG	+	chr7.4:41493235-41493254	None:intergenic	30.0%
AGCTTCTTAACAATGCCTTT+AGG	-	chr7.4:41493312-41493331	MS.gene055263:CDS	35.0%
AGGTTTAAGGAAAACTGGAA+GGG	+	chr7.4:41493646-41493665	None:intergenic	35.0%
ATACCGTTAACAAATCCTTG+AGG	+	chr7.4:41493672-41493691	None:intergenic	35.0%
ATTATAGCAGCCATTAGAGT+TGG	+	chr7.4:41493562-41493581	None:intergenic	35.0%
GGAATTGTTCGAATATTTGG+TGG	-	chr7.4:41494105-41494124	MS.gene055263:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	41493186	41494254	41493186	ID=MS.gene055263
chr7.4	mRNA	41493186	41494254	41493186	ID=MS.gene055263.t1;Parent=MS.gene055263
chr7.4	exon	41493643	41494254	41493643	ID=MS.gene055263.t1.exon1;Parent=MS.gene055263.t1
chr7.4	CDS	41493643	41494254	41493643	ID=cds.MS.gene055263.t1;Parent=MS.gene055263.t1
chr7.4	exon	41493186	41493572	41493186	ID=MS.gene055263.t1.exon2;Parent=MS.gene055263.t1
chr7.4	CDS	41493186	41493572	41493186	ID=cds.MS.gene055263.t1;Parent=MS.gene055263.t1

Gene Sequence

>MS.gene055263

ATGGCTGCTAGTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGCTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGAAGGTTGTATGTCTACTGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCTGAAGATTATTGCAGCGCTCTTAAATTCAACATTGATGACACTCAACCAACAAAGTACTTCACATGCGCTGCCAACTCTAATGGCTGCTATAATCCGGATATGATCTCATCAACGTATAAAGATAAATATAAATGTCGATGTACTTGTTCTTTTACCCTTCCAGTTTTCCTTAAACCTCTCCCTCAAGGATTTGTTAACGGTATAGCTACGTATGTCATAACTGATGATCTCACCATCAAGCCAAACTGTATTGACTATACAAACTTTAGTTTGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGTTTGAGTATTGCGTTTGTTTATAACTTCTCTCTAATTTTTTTGATTGATTATATATATACAGGTACTTGATCTGCTAAAGTGTTCTTTGCTTTCCAAATCAAGTTTGACAGATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGATCAAGATTTATTTTATGTGATGTTGAAATTAGTGGCAATATCCAAATCAATCTAAAGCTAGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTGAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAAATGATTTGGATGAAAACCAATATTTGACATCATCGTATGCTATAAGAACAGGCTTGTTGATCCTTACATTGCCTCACGGTTAA

Protein sequence

>MS.gene055263.t1

MAASATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQATVGCLNSLYKSVADLDEGCMSTEAIKQMLLQPINSAEDYCSALKFNIDDTQPTKYFTCAANSNGCYNPDMISSTYKDKYKCRCTCSFTLPVFLKPLPQGFVNGIATYVITDDLTIKPNCIDYTNFSLVKEVVLNVTKEKVLDLLKCSLLSKSSLTDLFLGKKPSLERSRFILCDVEISGNIQINLKLVIRKSDNKVLYAQGQQDFANLLLSFLTFPLGGIVRIFGGNCSLGSINGLYKSINDLDENQYLTSSYAIRTGLLILTLPHG