AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055263

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055263.t1 MTR_7g062300 84.098 327 41 1 4 319 2 328 0.0 541
MS.gene055263.t1 MTR_7g062300 30.631 222 130 7 14 221 256 467 1.36e-13 71.6
MS.gene055263.t1 MTR_7g062280 78.932 337 46 3 7 319 3 338 0.0 513
MS.gene055263.t1 MTR_7g062280 30.222 225 129 7 14 221 266 479 8.51e-17 81.3
MS.gene055263.t1 MTR_7g063920 63.190 326 71 2 5 319 2 289 2.34e-132 384
MS.gene055263.t1 MTR_7g063830 59.385 325 119 3 7 319 3 326 5.06e-127 371
MS.gene055263.t1 MTR_7g063900 56.268 343 126 5 1 331 1 331 5.35e-121 357
MS.gene055263.t1 MTR_7g063900 28.571 217 114 9 15 206 253 453 1.48e-13 71.6
MS.gene055263.t1 MTR_7g063880 60.000 320 99 5 5 309 2 307 3.70e-118 349
MS.gene055263.t1 MTR_7g063880 30.357 224 127 6 14 221 246 456 8.99e-13 69.3
MS.gene055263.t1 MTR_7g063880 46.377 69 32 1 247 310 11 79 1.35e-11 65.5
MS.gene055263.t1 MTR_7g063820 54.227 343 128 6 7 331 3 334 1.17e-110 330
MS.gene055263.t1 MTR_7g063820 27.111 225 135 8 17 221 257 472 5.00e-11 63.9
MS.gene055263.t1 MTR_7g063660 56.347 323 125 4 9 319 4 322 1.34e-110 330
MS.gene055263.t1 MTR_7g063660 29.018 224 133 7 14 220 250 464 1.81e-15 77.4
MS.gene055263.t1 MTR_7g063840 56.000 325 125 5 10 321 5 324 2.05e-110 329
MS.gene055263.t1 MTR_3g007740 55.927 329 109 8 10 319 5 316 2.02e-105 316
MS.gene055263.t1 MTR_7g063890 53.916 332 132 5 12 331 25 347 2.94e-103 312
MS.gene055263.t1 MTR_7g063670 51.976 329 120 5 12 319 13 324 1.62e-96 293
MS.gene055263.t1 MTR_7g062270 67.935 184 57 2 8 190 3 185 3.69e-84 259
MS.gene055263.t1 MTR_7g066480 44.037 327 149 8 14 316 16 332 9.62e-80 249
MS.gene055263.t1 MTR_7g066490 44.373 311 157 5 14 316 16 318 1.82e-76 241
MS.gene055263.t1 MTR_7g066410 39.669 363 173 8 12 331 8 367 2.02e-74 238
MS.gene055263.t1 MTR_7g066410 25.957 235 147 5 8 221 278 506 4.79e-13 70.1
MS.gene055263.t1 MTR_7g066570 41.265 332 173 6 1 316 1 326 4.86e-73 236
MS.gene055263.t1 MTR_7g066430 42.593 324 164 4 15 317 5 327 1.16e-72 233
MS.gene055263.t1 MTR_7g066430 25.311 241 147 8 5 221 248 479 7.00e-13 69.7
MS.gene055263.t1 MTR_7g066260 40.708 339 174 8 2 316 3 338 6.11e-68 221
MS.gene055263.t1 MTR_7g012680 41.667 324 169 7 1 316 1 312 1.10e-67 219
MS.gene055263.t1 MTR_7g058710 36.310 336 172 8 4 314 2 320 2.37e-64 211
MS.gene055263.t1 MTR_7g066580 41.806 299 145 7 26 316 7 284 6.83e-64 209
MS.gene055263.t1 MTR_7g066580 27.897 233 139 10 13 222 214 440 2.87e-13 70.5
MS.gene055263.t1 MTR_3g065200 42.947 319 115 10 14 317 3 269 5.05e-63 207
MS.gene055263.t1 MTR_7g066350 38.532 327 176 8 13 317 8 331 3.08e-61 202
MS.gene055263.t1 MTR_7g066340 35.530 349 171 8 4 316 2 332 6.84e-61 202
MS.gene055263.t1 MTR_7g066290 39.528 339 179 10 1 316 1 336 1.43e-60 200
MS.gene055263.t1 MTR_7g066360 39.706 340 162 10 1 309 1 328 7.77e-60 199
MS.gene055263.t1 MTR_1g041315 35.673 342 183 7 1 308 1 339 1.56e-57 193
MS.gene055263.t1 MTR_4g019310 35.821 335 184 6 8 314 2 333 5.27e-52 179
MS.gene055263.t1 MTR_7g058700 35.385 325 146 7 26 318 531 823 9.57e-52 184
MS.gene055263.t1 MTR_7g063690 39.437 284 95 7 5 274 2 222 5.93e-46 156
MS.gene055263.t1 MTR_7g066400 32.277 347 172 9 1 319 1 312 4.99e-45 159
MS.gene055263.t1 MTR_2g029400 31.988 322 136 5 1 308 1 253 3.57e-43 154
MS.gene055263.t1 MTR_2g029400 45.205 73 34 2 247 314 14 85 1.33e-11 65.5
MS.gene055263.t1 MTR_4g017410 31.014 345 175 13 8 305 3 331 6.53e-41 149
MS.gene055263.t1 MTR_7g066310 33.876 307 150 7 13 316 6 262 1.22e-40 147
MS.gene055263.t1 MTR_7g066310 27.027 222 118 8 10 221 190 377 6.24e-14 72.4
MS.gene055263.t1 MTR_1g014060 41.827 208 99 6 23 214 9 210 1.11e-39 144
MS.gene055263.t1 MTR_4g017830 29.532 342 191 11 4 309 2 329 4.56e-37 139
MS.gene055263.t1 MTR_4g017440 29.915 351 189 13 1 309 1 336 1.16e-36 138
MS.gene055263.t1 MTR_4g017440 29.004 231 129 9 15 220 275 495 1.42e-13 71.6
MS.gene055263.t1 MTR_4g019340 31.195 343 180 9 11 309 35 365 4.22e-36 136
MS.gene055263.t1 MTR_4g017470 29.217 332 167 10 8 309 3 296 7.99e-35 132
MS.gene055263.t1 MTR_4g017470 25.101 247 146 8 5 220 225 463 2.26e-11 65.1
MS.gene055263.t1 MTR_8g023240 28.526 312 189 6 15 308 38 333 5.53e-34 131
MS.gene055263.t1 MTR_7g063720 63.830 94 33 1 227 319 2 95 3.84e-33 123
MS.gene055263.t1 MTR_7g063720 30.631 222 112 9 16 221 25 220 8.96e-19 84.3
MS.gene055263.t1 MTR_4g017610 30.321 343 186 14 7 309 2 331 1.03e-30 121
MS.gene055263.t1 MTR_7g063850 45.775 142 38 4 191 319 18 133 5.68e-24 99.8
MS.gene055263.t1 MTR_4g017550 28.710 310 166 12 44 314 21 314 1.28e-23 101
MS.gene055263.t1 MTR_4g017550 30.769 195 112 6 2 182 235 420 1.26e-12 68.9
MS.gene055263.t1 MTR_7g066280 30.472 233 143 7 93 318 1 221 2.45e-22 97.1
MS.gene055263.t1 MTR_8g445860 30.556 252 130 8 1 227 7 238 3.97e-22 93.6
MS.gene055263.t1 MTR_7g100420 41.892 148 83 2 171 316 99 245 1.11e-21 95.1
MS.gene055263.t1 MTR_7g100420 49.398 83 39 2 8 88 33 114 6.48e-13 69.3
MS.gene055263.t1 MTR_7g100420 28.700 223 132 6 16 221 179 391 1.42e-11 65.5
MS.gene055263.t1 MTR_0150s0010 28.846 260 125 8 3 226 2 237 2.14e-18 83.2
MS.gene055263.t1 MTR_1g115440 28.968 252 134 8 5 226 2 238 4.37e-18 82.4
MS.gene055263.t1 MTR_7g066680 36.975 119 69 1 204 316 37 155 1.06e-17 83.2
MS.gene055263.t1 MTR_7g066680 28.169 213 129 9 8 208 80 280 1.16e-13 71.2
MS.gene055263.t1 MTR_2g067310 31.963 219 100 6 20 236 53 224 3.45e-16 77.4
MS.gene055263.t1 MTR_7g063870 57.143 56 24 0 8 63 25 80 4.58e-14 71.6
MS.gene055263.t1 MTR_1g115455 39.175 97 49 2 1 97 1 87 8.51e-13 67.4
MS.gene055263.t1 MTR_1g115450 39.175 97 47 2 1 97 1 85 3.68e-12 63.5
MS.gene055263.t1 MTR_4g019240 36.522 115 61 4 10 114 7 119 2.60e-11 62.0
MS.gene055263.t1 MTR_1g115470 38.947 95 51 2 16 108 8 97 6.94e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055263.t1 AT3G09110 34.891 321 168 7 16 308 11 318 9.76e-56 185
MS.gene055263.t1 AT3G09120 36.420 324 156 9 13 301 5 313 9.77e-52 174
MS.gene055263.t1 AT3G09140 35.207 338 173 7 13 309 8 340 1.48e-51 178
MS.gene055263.t1 AT3G09140 24.896 241 127 7 13 225 277 491 1.71e-12 68.6
MS.gene055263.t1 AT5G01120 35.758 330 165 7 15 308 10 328 4.34e-48 169
MS.gene055263.t1 AT5G01150 32.945 343 183 6 9 317 4 333 9.86e-47 165
MS.gene055263.t1 AT3G09140 32.514 366 173 8 13 309 8 368 2.01e-46 165
MS.gene055263.t1 AT3G09140 24.896 241 127 7 13 225 305 519 2.35e-12 68.2
MS.gene055263.t1 AT5G01130 33.036 336 189 8 9 321 4 326 4.44e-44 157
MS.gene055263.t1 AT5G43240 32.099 324 186 5 15 308 10 329 1.93e-37 140
MS.gene055263.t1 AT5G43240 32.099 324 186 5 15 308 10 329 1.93e-37 140
MS.gene055263.t1 AT5G43240 32.099 324 186 5 15 308 10 329 1.93e-37 140
MS.gene055263.t1 AT5G01140 30.383 339 185 8 1 317 1 310 5.15e-34 130
MS.gene055263.t1 AT5G37320 30.028 353 205 11 15 329 10 358 8.16e-30 119

Find 61 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTGAGGGAGAGGTTTA+AGG 0.191223 7.4:+41493762 None:intergenic
TAACTAGCTTTAGATTGATT+TGG 0.246947 7.4:+41493425 None:intergenic
CAAATCTGTCAAACTTGATT+TGG 0.259575 7.4:+41493519 None:intergenic
GGTGGAATTGTTCGAATATT+TGG 0.267420 7.4:-41493316 MS.gene055263:CDS
GTCAATACAGTTTGGCTTGA+TGG 0.284902 7.4:+41493697 None:intergenic
GGGAGAGGTTTAAGGAAAAC+TGG 0.321020 7.4:+41493770 None:intergenic
CATACGATGATGTCAAATAT+TGG 0.324775 7.4:+41493230 None:intergenic
GTACAAGAGTATAAATGATT+TGG 0.352517 7.4:-41493260 MS.gene055263:CDS
TGACTATACAAACTTTAGTT+TGG 0.354593 7.4:-41493678 MS.gene055263:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41494186 None:intergenic
TTATGTGATGTTGAAATTAG+TGG 0.375665 7.4:-41493454 MS.gene055263:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.4:-41494089 MS.gene055263:CDS
TTTGTATAGTCAATACAGTT+TGG 0.396955 7.4:+41493689 None:intergenic
CTCCCTCAAGGATTTGTTAA+CGG 0.402590 7.4:-41493752 MS.gene055263:CDS
ACATGCGCTGCCAACTCTAA+TGG 0.404291 7.4:-41493869 MS.gene055263:CDS
TGTTCCTTGGGAAGCATCAA+TGG 0.409256 7.4:-41493286 MS.gene055263:CDS
TACGTTGATGAGATCATATC+CGG 0.410635 7.4:+41493836 None:intergenic
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.4:-41494106 MS.gene055263:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.4:-41494154 MS.gene055263:CDS
ATTTGGTGGGAATTGTTCCT+TGG 0.418722 7.4:-41493299 MS.gene055263:CDS
TAATCTTCAGCTGAGTTGAT+TGG 0.431768 7.4:+41493944 None:intergenic
CTCTAATGGCTGCTATAATC+CGG 0.453867 7.4:-41493855 MS.gene055263:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.455123 7.4:-41493334 MS.gene055263:CDS
TCATCGTATGCTATAAGAAC+AGG 0.455956 7.4:-41493217 MS.gene055263:CDS
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.4:-41493642 MS.gene055263:intron
TTTGGTGGGAATTGTTCCTT+GGG 0.483082 7.4:-41493298 MS.gene055263:CDS
AAATAAATCTTGATCTCTCA+AGG 0.483684 7.4:+41493476 None:intergenic
TTTAACCGTGAGGCAATGTA+AGG 0.485081 7.4:+41493185 None:intergenic
TTAACAAATCCTTGAGGGAG+AGG 0.510087 7.4:+41493755 None:intergenic
AACAAGGTATTGTATGCTCA+AGG 0.515072 7.4:-41493388 MS.gene055263:CDS
GGAATTGTTCGAATATTTGG+TGG 0.517282 7.4:-41493313 MS.gene055263:CDS
CTTTAGTTTGGTAAAAGAAG+TGG 0.518671 7.4:-41493666 MS.gene055263:CDS
TACCGTTAACAAATCCTTGA+GGG 0.519784 7.4:+41493750 None:intergenic
ATTATAGCAGCCATTAGAGT+TGG 0.521327 7.4:+41493859 None:intergenic
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.4:-41494149 MS.gene055263:CDS
TTCCTTAAACCTCTCCCTCA+AGG 0.539869 7.4:-41493764 MS.gene055263:CDS
GCGCATGTGAAGTACTTTGT+TGG 0.540167 7.4:+41493884 None:intergenic
GAATTGTTCGAATATTTGGT+GGG 0.543684 7.4:-41493312 MS.gene055263:CDS
AGAAGCAGGGAAGGACTTTG+TGG 0.556414 7.4:-41494140 MS.gene055263:CDS
AATCTTGATCTCTCAAGGGA+TGG 0.572575 7.4:+41493481 None:intergenic
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.4:-41494153 MS.gene055263:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.4:-41494080 MS.gene055263:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.4:+41494091 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.4:-41494066 MS.gene055263:CDS
AGCATAGGGCAAGCTACAGT+CGG 0.587085 7.4:-41494052 MS.gene055263:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.4:-41494067 MS.gene055263:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.4:+41494081 None:intergenic
TTGATCCTTACATTGCCTCA+CGG 0.599212 7.4:-41493190 MS.gene055263:CDS
AATAAATCTTGATCTCTCAA+GGG 0.605224 7.4:+41493477 None:intergenic
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.4:-41494023 MS.gene055263:CDS
TATAAGAAAATCAGATAACA+AGG 0.631180 7.4:-41493404 MS.gene055263:CDS
GAGGTTTAAGGAAAACTGGA+AGG 0.631369 7.4:+41493774 None:intergenic
CAATCCATTGATGCTTCCCA+AGG 0.636233 7.4:+41493282 None:intergenic
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.4:+41493322 None:intergenic
ACAAGGTATTGTATGCTCAA+GGG 0.641517 7.4:-41493387 MS.gene055263:CDS
TACTACTTCTACTCAAGCAG+AGG 0.643522 7.4:-41494218 MS.gene055263:CDS
ATACCGTTAACAAATCCTTG+AGG 0.650048 7.4:+41493749 None:intergenic
AGTGTGGCAGATCTTGATGA+AGG 0.650226 7.4:-41494007 MS.gene055263:CDS
CTTGCTTAACTTTAACCGTG+AGG 0.652632 7.4:+41493175 None:intergenic
AGGTTTAAGGAAAACTGGAA+GGG 0.668140 7.4:+41493775 None:intergenic
TGAAGGTTGTATGTCTACTG+AGG 0.749587 7.4:-41493990 MS.gene055263:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTGATTATATATATAC+AGG - chr7.4:41493846-41493865 MS.gene055263:CDS 15.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.4:41494014-41494033 MS.gene055263:CDS 20.0%
! AAATAAATCTTGATCTCTCA+AGG + chr7.4:41493945-41493964 None:intergenic 25.0%
! AATAAATCTTGATCTCTCAA+GGG + chr7.4:41493944-41493963 None:intergenic 25.0%
! TGACTATACAAACTTTAGTT+TGG - chr7.4:41493740-41493759 MS.gene055263:CDS 25.0%
! TTATGTGATGTTGAAATTAG+TGG - chr7.4:41493964-41493983 MS.gene055263:CDS 25.0%
! TTTGTATAGTCAATACAGTT+TGG + chr7.4:41493732-41493751 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41493237-41493256 MS.gene055263:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.4:41494081-41494100 MS.gene055263:CDS 25.0%
!! GTACAAGAGTATAAATGATT+TGG - chr7.4:41494158-41494177 MS.gene055263:CDS 25.0%
!!! AGTTTGACAGATTTGTTTTT+AGG - chr7.4:41493907-41493926 MS.gene055263:CDS 25.0%
!!! GTTTGACAGATTTGTTTTTA+GGG - chr7.4:41493908-41493927 MS.gene055263:CDS 25.0%
!!! TAACTAGCTTTAGATTGATT+TGG + chr7.4:41493996-41494015 None:intergenic 25.0%
AAACTCACTCTATAAAAGTG+TGG - chr7.4:41493395-41493414 MS.gene055263:CDS 30.0%
CAAATCTGTCAAACTTGATT+TGG + chr7.4:41493902-41493921 None:intergenic 30.0%
CATACGATGATGTCAAATAT+TGG + chr7.4:41494191-41494210 None:intergenic 30.0%
GAATTGTTCGAATATTTGGT+GGG - chr7.4:41494106-41494125 MS.gene055263:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41493235-41493254 None:intergenic 30.0%
! CAAACACAAAACCTTTTCTT+TGG + chr7.4:41493790-41493809 None:intergenic 30.0%
! GAGTTTTCTTACATTTCCTT+TGG - chr7.4:41494080-41494099 MS.gene055263:CDS 30.0%
!! CTTTAGTTTGGTAAAAGAAG+TGG - chr7.4:41493752-41493771 MS.gene055263:CDS 30.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.4:41493312-41493331 MS.gene055263:CDS 35.0%
AGGTTTAAGGAAAACTGGAA+GGG + chr7.4:41493646-41493665 None:intergenic 35.0%
ATACCGTTAACAAATCCTTG+AGG + chr7.4:41493672-41493691 None:intergenic 35.0%
ATTATAGCAGCCATTAGAGT+TGG + chr7.4:41493562-41493581 None:intergenic 35.0%
GGAATTGTTCGAATATTTGG+TGG - chr7.4:41494105-41494124 MS.gene055263:CDS 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7.4:41494102-41494121 MS.gene055263:CDS 35.0%
TACCGTTAACAAATCCTTGA+GGG + chr7.4:41493671-41493690 None:intergenic 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.4:41493352-41493371 MS.gene055263:CDS 35.0%
TCATCGTATGCTATAAGAAC+AGG - chr7.4:41494201-41494220 MS.gene055263:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7.4:41493776-41493795 MS.gene055263:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7.4:41494084-41494103 MS.gene055263:CDS 35.0%
! TACGTTGATGAGATCATATC+CGG + chr7.4:41493585-41493604 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.4:41494030-41494049 MS.gene055263:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.4:41494031-41494050 MS.gene055263:CDS 35.0%
!! TAATCTTCAGCTGAGTTGAT+TGG + chr7.4:41493477-41493496 None:intergenic 35.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.4:41493330-41493349 None:intergenic 40.0%
AATCTTGATCTCTCAAGGGA+TGG + chr7.4:41493940-41493959 None:intergenic 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7.4:41494099-41494118 None:intergenic 40.0%
CTCTAATGGCTGCTATAATC+CGG - chr7.4:41493563-41493582 MS.gene055263:intron 40.0%
GAGGTTTAAGGAAAACTGGA+AGG + chr7.4:41493647-41493666 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.4:41493351-41493370 MS.gene055263:CDS 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.4:41493200-41493219 MS.gene055263:CDS 40.0%
TGAAGGTTGTATGTCTACTG+AGG - chr7.4:41493428-41493447 MS.gene055263:CDS 40.0%
TTAACAAATCCTTGAGGGAG+AGG + chr7.4:41493666-41493685 None:intergenic 40.0%
TTGATCCTTACATTGCCTCA+CGG - chr7.4:41494228-41494247 MS.gene055263:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.4:41493329-41493348 MS.gene055263:CDS 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7.4:41494120-41494139 MS.gene055263:CDS 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7.4:41494119-41494138 MS.gene055263:CDS 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.4:41493264-41493283 MS.gene055263:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.4:41493265-41493284 MS.gene055263:CDS 40.0%
!! CTCCCTCAAGGATTTGTTAA+CGG - chr7.4:41493666-41493685 MS.gene055263:CDS 40.0%
!! GTCAATACAGTTTGGCTTGA+TGG + chr7.4:41493724-41493743 None:intergenic 40.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.4:41493411-41493430 MS.gene055263:CDS 45.0%
ATCCTTGAGGGAGAGGTTTA+AGG + chr7.4:41493659-41493678 None:intergenic 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7.4:41494139-41494158 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.4:41493338-41493357 MS.gene055263:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.4:41493340-41493359 None:intergenic 45.0%
GGGAGAGGTTTAAGGAAAAC+TGG + chr7.4:41493651-41493670 None:intergenic 45.0%
TTCCTTAAACCTCTCCCTCA+AGG - chr7.4:41493654-41493673 MS.gene055263:CDS 45.0%
! GCGCATGTGAAGTACTTTGT+TGG + chr7.4:41493537-41493556 None:intergenic 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7.4:41494132-41494151 MS.gene055263:CDS 45.0%
ACATGCGCTGCCAACTCTAA+TGG - chr7.4:41493549-41493568 MS.gene055263:CDS 50.0%
AGAAGCAGGGAAGGACTTTG+TGG - chr7.4:41493278-41493297 MS.gene055263:CDS 50.0%
AGCATAGGGCAAGCTACAGT+CGG - chr7.4:41493366-41493385 MS.gene055263:CDS 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.4:41493269-41493288 MS.gene055263:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41493186 41494254 41493186 ID=MS.gene055263
chr7.4 mRNA 41493186 41494254 41493186 ID=MS.gene055263.t1;Parent=MS.gene055263
chr7.4 exon 41493643 41494254 41493643 ID=MS.gene055263.t1.exon1;Parent=MS.gene055263.t1
chr7.4 CDS 41493643 41494254 41493643 ID=cds.MS.gene055263.t1;Parent=MS.gene055263.t1
chr7.4 exon 41493186 41493572 41493186 ID=MS.gene055263.t1.exon2;Parent=MS.gene055263.t1
chr7.4 CDS 41493186 41493572 41493186 ID=cds.MS.gene055263.t1;Parent=MS.gene055263.t1
Gene Sequence

>MS.gene055263

ATGGCTGCTAGTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGCTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGAAGGTTGTATGTCTACTGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCTGAAGATTATTGCAGCGCTCTTAAATTCAACATTGATGACACTCAACCAACAAAGTACTTCACATGCGCTGCCAACTCTAATGGCTGCTATAATCCGGATATGATCTCATCAACGTATAAAGATAAATATAAATGTCGATGTACTTGTTCTTTTACCCTTCCAGTTTTCCTTAAACCTCTCCCTCAAGGATTTGTTAACGGTATAGCTACGTATGTCATAACTGATGATCTCACCATCAAGCCAAACTGTATTGACTATACAAACTTTAGTTTGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGTTTGAGTATTGCGTTTGTTTATAACTTCTCTCTAATTTTTTTGATTGATTATATATATACAGGTACTTGATCTGCTAAAGTGTTCTTTGCTTTCCAAATCAAGTTTGACAGATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGATCAAGATTTATTTTATGTGATGTTGAAATTAGTGGCAATATCCAAATCAATCTAAAGCTAGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTGAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAAATGATTTGGATGAAAACCAATATTTGACATCATCGTATGCTATAAGAACAGGCTTGTTGATCCTTACATTGCCTCACGGTTAA
Protein sequence

>MS.gene055263.t1

MAASATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQATVGCLNSLYKSVADLDEGCMSTEAIKQMLLQPINSAEDYCSALKFNIDDTQPTKYFTCAANSNGCYNPDMISSTYKDKYKCRCTCSFTLPVFLKPLPQGFVNGIATYVITDDLTIKPNCIDYTNFSLVKEVVLNVTKEKVLDLLKCSLLSKSSLTDLFLGKKPSLERSRFILCDVEISGNIQINLKLVIRKSDNKVLYAQGQQDFANLLLSFLTFPLGGIVRIFGGNCSLGSINGLYKSINDLDENQYLTSSYAIRTGLLILTLPHG