AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055189

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055189.t1 MTR_7g062300 54.545 473 199 8 2 461 3 472 1.29e-170 489
MS.gene055189.t1 MTR_7g062280 52.439 492 204 9 3 467 2 490 4.41e-165 476
MS.gene055189.t1 MTR_7g063840 54.661 472 194 10 9 467 8 472 5.04e-161 464
MS.gene055189.t1 MTR_7g063900 54.192 489 187 10 3 462 2 482 1.24e-160 464
MS.gene055189.t1 MTR_7g063920 52.201 477 176 7 1 467 1 435 5.65e-156 450
MS.gene055189.t1 MTR_7g063880 53.926 484 189 11 1 467 1 467 3.79e-155 449
MS.gene055189.t1 MTR_7g063830 51.271 472 193 10 3 467 2 443 1.83e-151 439
MS.gene055189.t1 MTR_7g063890 55.258 485 185 11 4 462 20 498 2.11e-149 436
MS.gene055189.t1 MTR_7g063660 49.792 480 204 11 12 467 10 476 1.98e-145 425
MS.gene055189.t1 MTR_7g063660 30.568 229 140 8 8 228 247 464 3.23e-18 87.4
MS.gene055189.t1 MTR_7g063820 50.398 502 192 11 3 467 2 483 6.49e-141 414
MS.gene055189.t1 MTR_3g007740 50.847 472 182 10 7 462 5 442 3.69e-138 405
MS.gene055189.t1 MTR_7g063720 79.835 243 42 3 234 473 1 239 5.54e-133 384
MS.gene055189.t1 MTR_7g063720 29.091 220 127 9 14 229 26 220 2.82e-15 75.9
MS.gene055189.t1 MTR_7g063670 48.701 462 210 7 9 464 13 453 1.94e-130 386
MS.gene055189.t1 MTR_7g066570 42.324 482 231 12 12 462 15 480 4.98e-110 337
MS.gene055189.t1 MTR_3g065200 43.202 456 190 13 12 449 4 408 5.01e-102 313
MS.gene055189.t1 MTR_7g066260 41.314 472 249 7 3 462 7 462 5.32e-102 314
MS.gene055189.t1 MTR_7g066480 39.957 463 202 9 12 459 17 418 1.09e-94 293
MS.gene055189.t1 MTR_7g058710 37.827 497 261 11 2 467 3 482 6.55e-94 293
MS.gene055189.t1 MTR_7g066410 37.402 508 261 10 9 462 8 512 5.21e-93 292
MS.gene055189.t1 MTR_7g066410 30.894 246 132 9 5 229 278 506 2.04e-15 79.0
MS.gene055189.t1 MTR_7g066430 38.636 484 255 7 12 459 5 482 1.80e-92 290
MS.gene055189.t1 MTR_7g012680 38.710 465 237 8 12 462 15 445 2.46e-91 285
MS.gene055189.t1 MTR_7g066360 41.226 473 235 11 1 458 1 445 3.18e-89 281
MS.gene055189.t1 MTR_7g066340 38.235 476 257 12 1 462 1 453 2.28e-88 278
MS.gene055189.t1 MTR_7g066350 37.422 481 236 11 12 465 10 452 9.21e-87 274
MS.gene055189.t1 MTR_7g066400 37.787 479 226 13 10 465 11 440 3.71e-86 272
MS.gene055189.t1 MTR_7g066490 37.281 456 210 9 12 459 17 404 1.30e-83 264
MS.gene055189.t1 MTR_7g066290 39.009 464 224 11 12 462 16 433 1.32e-83 265
MS.gene055189.t1 MTR_7g066580 35.789 475 242 8 17 462 1 441 5.76e-83 264
MS.gene055189.t1 MTR_7g066580 27.391 230 147 6 14 230 218 440 1.41e-13 73.2
MS.gene055189.t1 MTR_1g041315 35.217 460 250 8 12 446 15 451 3.83e-81 260
MS.gene055189.t1 MTR_1g041315 25.108 231 142 7 256 456 14 243 3.77e-11 65.5
MS.gene055189.t1 MTR_4g019310 34.337 498 282 11 5 464 2 492 1.06e-71 236
MS.gene055189.t1 MTR_7g058700 34.199 462 211 10 23 462 531 921 3.46e-70 240
MS.gene055189.t1 MTR_4g017830 33.459 529 272 18 1 469 1 509 4.75e-70 232
MS.gene055189.t1 MTR_2g029400 34.934 458 212 10 12 451 15 404 9.45e-67 220
MS.gene055189.t1 MTR_2g029400 26.087 207 110 9 256 456 14 183 1.46e-11 66.6
MS.gene055189.t1 MTR_4g019340 33.264 484 257 12 12 450 39 501 9.16e-65 218
MS.gene055189.t1 MTR_4g019340 28.444 225 129 8 9 224 301 502 5.89e-14 74.3
MS.gene055189.t1 MTR_7g063850 44.186 301 139 7 182 467 1 287 2.52e-62 205
MS.gene055189.t1 MTR_4g017610 32.582 488 288 12 1 459 1 476 5.85e-59 201
MS.gene055189.t1 MTR_4g017440 30.769 494 289 12 14 462 17 502 1.18e-56 196
MS.gene055189.t1 MTR_4g017410 31.463 499 286 15 4 462 2 484 3.97e-56 195
MS.gene055189.t1 MTR_7g063690 44.086 279 86 6 9 283 10 222 2.04e-55 185
MS.gene055189.t1 MTR_7g062270 53.723 188 83 4 1 187 1 185 8.46e-54 186
MS.gene055189.t1 MTR_7g100420 40.575 313 156 8 163 458 94 393 2.93e-53 184
MS.gene055189.t1 MTR_7g100420 64.000 50 18 0 5 54 33 82 2.03e-13 72.4
MS.gene055189.t1 MTR_4g017470 29.254 523 269 15 1 468 1 477 3.80e-53 186
MS.gene055189.t1 MTR_1g014060 43.137 204 109 4 20 220 9 208 9.88e-43 156
MS.gene055189.t1 MTR_1g014060 37.640 178 107 2 286 462 210 384 1.06e-28 117
MS.gene055189.t1 MTR_1g014060 27.778 234 146 7 269 484 13 241 3.57e-13 71.6
MS.gene055189.t1 MTR_7g066680 35.216 301 138 7 212 458 37 334 1.33e-41 152
MS.gene055189.t1 MTR_7g066680 28.365 208 132 8 14 214 89 286 4.91e-15 76.6
MS.gene055189.t1 MTR_7g066280 28.637 433 206 14 90 462 1 390 4.90e-39 146
MS.gene055189.t1 MTR_7g066280 28.099 242 133 10 17 229 155 384 3.08e-14 74.7
MS.gene055189.t1 MTR_8g023240 27.140 479 286 17 8 454 34 481 6.18e-36 140
MS.gene055189.t1 MTR_4g017550 29.474 475 252 18 41 458 21 469 2.43e-35 137
MS.gene055189.t1 MTR_4g017550 28.750 240 133 7 14 233 250 471 6.36e-13 71.2
MS.gene055189.t1 MTR_8g445860 36.585 246 131 8 1 235 7 238 3.76e-34 129
MS.gene055189.t1 MTR_1g115440 36.800 250 128 8 1 233 1 237 3.16e-33 126
MS.gene055189.t1 MTR_7g066310 34.112 214 123 4 250 462 187 383 6.56e-32 127
MS.gene055189.t1 MTR_7g066310 53.982 113 52 0 12 124 8 120 7.66e-29 118
MS.gene055189.t1 MTR_7g066310 32.093 215 109 9 17 229 198 377 1.09e-16 82.4
MS.gene055189.t1 MTR_0150s0010 34.836 244 137 6 3 233 2 236 4.09e-29 115
MS.gene055189.t1 MTR_1g115455 34.426 244 132 10 4 233 2 231 3.78e-24 101
MS.gene055189.t1 MTR_7g063870 64.474 76 27 0 144 219 82 157 9.21e-24 100
MS.gene055189.t1 MTR_7g063870 75.000 56 14 0 5 60 25 80 2.95e-18 84.7
MS.gene055189.t1 MTR_7g063870 28.947 228 95 10 259 457 34 223 2.85e-11 64.3
MS.gene055189.t1 MTR_2g067310 34.211 190 76 7 12 195 44 190 2.86e-17 81.6
MS.gene055189.t1 MTR_1g115450 37.692 130 67 4 1 125 1 121 4.13e-16 75.5
MS.gene055189.t1 MTR_4g019240 42.727 110 53 3 12 113 14 121 8.62e-16 75.9
MS.gene055189.t1 MTR_7g063760 47.887 71 36 1 398 467 2 72 3.59e-15 70.9
MS.gene055189.t1 MTR_7g066390 32.934 167 66 2 297 462 1 122 1.10e-14 72.0
MS.gene055189.t1 MTR_8g445920 43.956 91 46 1 3 93 2 87 1.62e-14 70.1
MS.gene055189.t1 MTR_8g044890 43.956 91 46 1 3 93 2 87 1.62e-14 70.1
MS.gene055189.t1 MTR_1g115470 43.617 94 46 2 14 105 9 97 1.28e-13 73.2
MS.gene055189.t1 MTR_0150s0030 42.105 95 46 3 1 94 1 87 2.84e-13 69.3
MS.gene055189.t1 MTR_8g445910 43.158 95 45 3 1 94 1 87 1.83e-12 68.2
MS.gene055189.t1 MTR_8g044880 43.158 95 45 3 1 94 1 87 2.09e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055189.t1 AT3G09140 31.176 510 295 12 3 468 2 499 5.20e-61 207
MS.gene055189.t1 AT5G01130 31.381 478 284 13 4 467 2 449 3.40e-59 202
MS.gene055189.t1 AT5G01120 32.365 482 285 13 12 458 10 485 1.51e-58 201
MS.gene055189.t1 AT5G01120 28.000 250 138 9 6 235 262 489 7.57e-14 74.3
MS.gene055189.t1 AT5G01150 31.663 499 286 12 4 465 2 482 1.59e-56 196
MS.gene055189.t1 AT3G09140 29.554 538 295 13 3 468 2 527 5.45e-56 195
MS.gene055189.t1 AT5G43240 32.246 521 289 16 4 475 2 507 2.54e-55 193
MS.gene055189.t1 AT5G43240 32.246 521 289 16 4 475 2 507 2.54e-55 193
MS.gene055189.t1 AT5G43240 32.246 521 289 16 4 475 2 507 2.54e-55 193
MS.gene055189.t1 AT3G09110 38.318 321 175 6 14 321 12 322 1.33e-54 186
MS.gene055189.t1 AT5G01140 28.916 498 305 14 1 479 1 468 1.49e-51 182
MS.gene055189.t1 AT3G09120 36.943 314 176 5 12 310 7 313 9.49e-48 167
MS.gene055189.t1 AT5G37320 26.733 505 313 13 1 468 1 485 8.97e-35 136
MS.gene055189.t1 AT5G43240 29.143 350 201 11 162 475 25 363 6.36e-22 97.8

Find 83 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCAACAATTCTATTCT+TGG 0.237094 7.4:-40317968 None:intergenic
CATTCAAAGGAGTTTGAAAA+TGG 0.274574 7.4:-40318242 None:intergenic
GTTTGAAGGAAACTGTTCTT+TGG 0.289961 7.4:+40317876 MS.gene055189:CDS
ATAAAACTTTGTTGCTCTCT+TGG 0.301043 7.4:-40316937 None:intergenic
GCACCATAGCATACTTGATT+TGG 0.311535 7.4:+40317915 MS.gene055189:CDS
CTTGTAATATCCATTGAGTT+TGG 0.311703 7.4:-40317415 None:intergenic
TTTGGTATGCTCCAGAGTTT+TGG 0.326522 7.4:+40317439 MS.gene055189:CDS
TGGAATAAAGCACACTAGTT+TGG 0.327661 7.4:+40317459 MS.gene055189:CDS
AACTCCTTTGAATGACTTGA+AGG 0.334806 7.4:+40318251 MS.gene055189:CDS
TCAATGGATATTACAAGCTT+TGG 0.378411 7.4:+40317421 MS.gene055189:CDS
ATTAAATGTAAAACTGAAGT+TGG 0.382735 7.4:-40318216 None:intergenic
CCTCATTTATCCCCACAGTT+TGG 0.398100 7.4:+40317988 MS.gene055189:CDS
AGCTTCTTAACATTACCATT+TGG 0.402316 7.4:+40316998 MS.gene055189:CDS
TTTGAAGGAAACTGTTCTTT+GGG 0.409224 7.4:+40317877 MS.gene055189:CDS
CCGAACCAACATTCATCGTC+AGG 0.414914 7.4:-40317298 None:intergenic
TTTGAATGACTTGAAGGAAA+AGG 0.415391 7.4:+40318257 MS.gene055189:CDS
AATACACTTGTAATACTTTG+TGG 0.418975 7.4:-40317221 None:intergenic
GGATCTTCTGAAGTGCTCAT+TGG 0.422757 7.4:+40317627 MS.gene055189:CDS
ATACACTTGTAATACTTTGT+GGG 0.426799 7.4:-40317220 None:intergenic
TACAAATGGTCTTGGACACT+TGG 0.433960 7.4:+40318455 MS.gene055189:CDS
CAACCATTGGATTGTCATCA+AGG 0.434484 7.4:+40317692 MS.gene055189:CDS
TGCAATGGATTTGTTAAAGA+TGG 0.450449 7.4:+40317355 MS.gene055189:CDS
CTATGTTGTCACAGATGACT+TGG 0.452913 7.4:+40318176 MS.gene055189:CDS
GAAAATATTGTATGCTCAAG+GGG 0.458367 7.4:+40317789 MS.gene055189:CDS
CGTCAATGTCACAAAGGAAA+AGG 0.462700 7.4:+40317495 MS.gene055189:CDS
TGGTCCACCACAAGTTTCAA+TGG 0.464148 7.4:-40316917 None:intergenic
GGTTTCTAAGTCAACTTTGA+CGG 0.468220 7.4:+40317648 MS.gene055189:CDS
ACAATGGGATCTGTTACAAT+TGG 0.470466 7.4:+40317052 MS.gene055189:CDS
CCCTTCACATAACCATCAAC+AGG 0.474193 7.4:-40318144 None:intergenic
CTTGATGACAATCCAATGGT+TGG 0.475321 7.4:-40317691 None:intergenic
CATTCAATTCACAATTAAGC+TGG 0.492693 7.4:+40317747 MS.gene055189:CDS
AAGAGTCATGCCAAACTCAA+TGG 0.501624 7.4:+40317405 MS.gene055189:CDS
GCAGCTCTTACAAATGGTCT+TGG 0.502895 7.4:+40318447 MS.gene055189:CDS
AAGGAAAAGGTTATCAACAT+TGG 0.509621 7.4:+40318270 MS.gene055189:CDS
TGTGCTTTATTCCAAAACTC+TGG 0.510085 7.4:-40317450 None:intergenic
GCAACCACATAACTCCTTCG+AGG 0.515369 7.4:+40317156 MS.gene055189:CDS
GCAGTGTCTAAGCATATTGA+AGG 0.515824 7.4:+40318407 MS.gene055189:intron
GGGAAAATATTGTATGCTCA+AGG 0.519918 7.4:+40317787 MS.gene055189:CDS
TATCAACATTGGTCTTAATG+AGG 0.522803 7.4:+40318281 MS.gene055189:CDS
TGTCAAGATCTGCCACACTT+TGG 0.525138 7.4:-40317093 None:intergenic
TTTATTTGCTGAAGCAGGAA+AGG 0.525888 7.4:+40316955 MS.gene055189:CDS
CATCCAAATCAAGTATGCTA+TGG 0.525951 7.4:-40317918 None:intergenic
AAAGCACACTAGTTTGGTAA+AGG 0.525988 7.4:+40317465 MS.gene055189:CDS
TTAAGAATGAAACCAACCAT+TGG 0.528522 7.4:+40317679 MS.gene055189:CDS
TCAACAGCAGCTCTTACAAA+TGG 0.533519 7.4:+40318441 MS.gene055189:CDS
TGTTCTTTGGGAAGTATCGA+TGG 0.542058 7.4:+40317889 MS.gene055189:CDS
GGTGTTGTGCGTATGTTTGA+AGG 0.544358 7.4:+40317862 MS.gene055189:CDS
CCTGACGATGAATGTTGGTT+CGG 0.546465 7.4:+40317298 MS.gene055189:CDS
ATACGCACAACACCTCCTAA+AGG 0.555347 7.4:-40317853 None:intergenic
CTGGTTATTAGAAAATCAGA+TGG 0.557095 7.4:+40317766 MS.gene055189:CDS
GGAAAATATTGTATGCTCAA+GGG 0.563569 7.4:+40317788 MS.gene055189:CDS
ATTTGTAAGAGCTGCTGTTG+AGG 0.575365 7.4:-40318439 None:intergenic
CAAGTCATCTGTGACAACAT+AGG 0.575372 7.4:-40318175 None:intergenic
AGTCGTGTGATGGTTCCAAA+TGG 0.578063 7.4:-40317013 None:intergenic
GAATTGCGTCTGCAAACTCA+TGG 0.578728 7.4:-40317813 None:intergenic
GATTCTTCAGACCAAACTGT+GGG 0.578821 7.4:-40317999 None:intergenic
AAAACATCAACGAAATCGCA+TGG 0.589010 7.4:-40317256 None:intergenic
GATTGTATGAAAGAAGAGAA+AGG 0.592818 7.4:+40317118 MS.gene055189:CDS
TGTTTCCAGACCAACTACAT+TGG 0.595919 7.4:-40317326 None:intergenic
CTGGAAACACAATTCTGCAA+TGG 0.599181 7.4:+40317340 MS.gene055189:CDS
CTTGGTGATTGAAGAACAAG+AGG 0.603250 7.4:+40318473 MS.gene055189:CDS
CCTGTTGATGGTTATGTGAA+GGG 0.618307 7.4:+40318144 MS.gene055189:CDS
AATCCTTGATGACAATCCAA+TGG 0.620913 7.4:-40317695 None:intergenic
CCAAACTGTGGGGATAAATG+AGG 0.623529 7.4:-40317988 None:intergenic
TTCTAGTTCTACTCAATCAG+AGG 0.624316 7.4:+40316886 MS.gene055189:CDS
GGTGATTGAAGAACAAGAGG+GGG 0.630222 7.4:+40318476 MS.gene055189:CDS
TAATCCTCGAAGGAGTTATG+TGG 0.632148 7.4:-40317160 None:intergenic
ACCTGTTGATGGTTATGTGA+AGG 0.633214 7.4:+40318143 MS.gene055189:CDS
TGATTCTTCAGACCAAACTG+TGG 0.648098 7.4:-40318000 None:intergenic
TTGGTGATTGAAGAACAAGA+GGG 0.649123 7.4:+40318474 MS.gene055189:CDS
TCACATAACCATCAACAGGT+AGG 0.653906 7.4:-40318140 None:intergenic
AATGTCCTGACGATGAATGT+TGG 0.661808 7.4:+40317293 MS.gene055189:CDS
AGAGCTGCAATAATCCTCGA+AGG 0.663808 7.4:-40317170 None:intergenic
TAACAATCTCTACCAAAGTG+TGG 0.667124 7.4:+40317081 MS.gene055189:CDS
TGGTTATTAGAAAATCAGAT+GGG 0.669816 7.4:+40317767 MS.gene055189:CDS
TTGTGATGTTGAAAACGCTA+AGG 0.670177 7.4:+40317723 MS.gene055189:CDS
AATGATCGTCAATGTCACAA+AGG 0.671247 7.4:+40317489 MS.gene055189:CDS
GTATGTGCCATTGAAACTTG+TGG 0.675302 7.4:+40316910 MS.gene055189:CDS
TGGTGATTGAAGAACAAGAG+GGG 0.696303 7.4:+40318475 MS.gene055189:CDS
GTGATTGAAGAACAAGAGGG+GGG 0.705515 7.4:+40318477 MS.gene055189:CDS
TGTGCCATTGAAACTTGTGG+TGG 0.711857 7.4:+40316913 MS.gene055189:CDS
ATTCTTCAGACCAAACTGTG+GGG 0.725443 7.4:-40317998 None:intergenic
AAAATATTGTATGCTCAAGG+GGG 0.738285 7.4:+40317790 MS.gene055189:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATAACAAGTTAAT+AGG - chr7.4:40318385-40318404 None:intergenic 15.0%
!! TATTAAACAATCAAACAAAA+AGG - chr7.4:40317592-40317611 None:intergenic 15.0%
!! TTAATATTCTATATAGATAC+TGG + chr7.4:40317606-40317625 MS.gene055189:intron 15.0%
!!! AAAAGATAGATTATTTTGAT+TGG + chr7.4:40318085-40318104 MS.gene055189:CDS 15.0%
!! ATTAAATGTAAAACTGAAGT+TGG - chr7.4:40318219-40318238 None:intergenic 20.0%
!!! TTTGAAATTGGAATCTATAT+AGG - chr7.4:40318322-40318341 None:intergenic 20.0%
! AATACACTTGTAATACTTTG+TGG - chr7.4:40317224-40317243 None:intergenic 25.0%
! ATACACTTGTAATACTTTGT+GGG - chr7.4:40317223-40317242 None:intergenic 25.0%
! TGGTTATTAGAAAATCAGAT+GGG + chr7.4:40317767-40317786 MS.gene055189:CDS 25.0%
!! ATCTATCTTTTCACAAGTTA+TGG - chr7.4:40318076-40318095 None:intergenic 25.0%
!! GAAGCACAAAAATTTGAAAT+TGG - chr7.4:40318334-40318353 None:intergenic 25.0%
AAAATATTGTATGCTCAAGG+GGG + chr7.4:40317790-40317809 MS.gene055189:CDS 30.0%
AAGGAAAAGGTTATCAACAT+TGG + chr7.4:40318270-40318289 MS.gene055189:CDS 30.0%
AGCTTCTTAACATTACCATT+TGG + chr7.4:40316998-40317017 MS.gene055189:CDS 30.0%
AGGATCAACAATTCTATTCT+TGG - chr7.4:40317971-40317990 None:intergenic 30.0%
ATAAAACTTTGTTGCTCTCT+TGG - chr7.4:40316940-40316959 None:intergenic 30.0%
CATTCAAAGGAGTTTGAAAA+TGG - chr7.4:40318245-40318264 None:intergenic 30.0%
CATTCAATTCACAATTAAGC+TGG + chr7.4:40317747-40317766 MS.gene055189:CDS 30.0%
CTGGTTATTAGAAAATCAGA+TGG + chr7.4:40317766-40317785 MS.gene055189:CDS 30.0%
CTTCAAAAAGAGTCAACAAT+GGG + chr7.4:40317037-40317056 MS.gene055189:CDS 30.0%
CTTGTAATATCCATTGAGTT+TGG - chr7.4:40317418-40317437 None:intergenic 30.0%
GAAAATATTGTATGCTCAAG+GGG + chr7.4:40317789-40317808 MS.gene055189:CDS 30.0%
GATTGTATGAAAGAAGAGAA+AGG + chr7.4:40317118-40317137 MS.gene055189:CDS 30.0%
GGAAAATATTGTATGCTCAA+GGG + chr7.4:40317788-40317807 MS.gene055189:CDS 30.0%
TAGGAGCAATAGTTTACAAT+AGG - chr7.4:40318366-40318385 None:intergenic 30.0%
TCAATGGATATTACAAGCTT+TGG + chr7.4:40317421-40317440 MS.gene055189:CDS 30.0%
TCTTCAAAAAGAGTCAACAA+TGG + chr7.4:40317036-40317055 MS.gene055189:CDS 30.0%
TTAAGAATGAAACCAACCAT+TGG + chr7.4:40317679-40317698 MS.gene055189:CDS 30.0%
TTTGAAGGAAACTGTTCTTT+GGG + chr7.4:40317877-40317896 MS.gene055189:CDS 30.0%
TTTGAATGACTTGAAGGAAA+AGG + chr7.4:40318257-40318276 MS.gene055189:CDS 30.0%
! AGTTTTCTGACTTTTCCTTT+AGG + chr7.4:40317838-40317857 MS.gene055189:CDS 30.0%
! ATCAGATTTTTCCAATTCGT+CGG + chr7.4:40318019-40318038 MS.gene055189:CDS 30.0%
! TGACAATAAAACTTTTCACG+TGG - chr7.4:40318045-40318064 None:intergenic 30.0%
! TTTTCCTTCAAGTCATTCAA+AGG - chr7.4:40318258-40318277 None:intergenic 30.0%
!! TATCAACATTGGTCTTAATG+AGG + chr7.4:40318281-40318300 MS.gene055189:CDS 30.0%
!! TGCAATGGATTTGTTAAAGA+TGG + chr7.4:40317355-40317374 MS.gene055189:CDS 30.0%
!!! AAAGTTTTATTTGCTGAAGC+AGG + chr7.4:40316950-40316969 MS.gene055189:CDS 30.0%
!!! CGTGAAAAGTTTTATTGTCA+TGG + chr7.4:40318045-40318064 MS.gene055189:CDS 30.0%
AAAAACCAATGTAGTTGGTC+TGG + chr7.4:40317321-40317340 MS.gene055189:CDS 35.0%
AAAACATCAACGAAATCGCA+TGG - chr7.4:40317259-40317278 None:intergenic 35.0%
AACTCCTTTGAATGACTTGA+AGG + chr7.4:40318251-40318270 MS.gene055189:CDS 35.0%
AATGATCGTCAATGTCACAA+AGG + chr7.4:40317489-40317508 MS.gene055189:CDS 35.0%
ACAATGGGATCTGTTACAAT+TGG + chr7.4:40317052-40317071 MS.gene055189:CDS 35.0%
CATCCAAATCAAGTATGCTA+TGG - chr7.4:40317921-40317940 None:intergenic 35.0%
GGGAAAATATTGTATGCTCA+AGG + chr7.4:40317787-40317806 MS.gene055189:CDS 35.0%
GGTTTCTAAGTCAACTTTGA+CGG + chr7.4:40317648-40317667 MS.gene055189:CDS 35.0%
GTTTGAAGGAAACTGTTCTT+TGG + chr7.4:40317876-40317895 MS.gene055189:CDS 35.0%
TAACAATCTCTACCAAAGTG+TGG + chr7.4:40317081-40317100 MS.gene055189:CDS 35.0%
TGGAATAAAGCACACTAGTT+TGG + chr7.4:40317459-40317478 MS.gene055189:CDS 35.0%
TTCGGAAAAACCAATGTAGT+TGG + chr7.4:40317316-40317335 MS.gene055189:CDS 35.0%
TTGTGATGTTGAAAACGCTA+AGG + chr7.4:40317723-40317742 MS.gene055189:CDS 35.0%
! AAAGCACACTAGTTTGGTAA+AGG + chr7.4:40317465-40317484 MS.gene055189:CDS 35.0%
! AATCCTTGATGACAATCCAA+TGG - chr7.4:40317698-40317717 None:intergenic 35.0%
! TCTGTGACAACATAGGTTTT+TGG - chr7.4:40318171-40318190 None:intergenic 35.0%
! TGTGCTTTATTCCAAAACTC+TGG - chr7.4:40317453-40317472 None:intergenic 35.0%
! TTGGTGATTGAAGAACAAGA+GGG + chr7.4:40318474-40318493 MS.gene055189:CDS 35.0%
! TTTATTTGCTGAAGCAGGAA+AGG + chr7.4:40316955-40316974 MS.gene055189:CDS 35.0%
! TTTCTGACTTTTCCTTTAGG+AGG + chr7.4:40317841-40317860 MS.gene055189:CDS 35.0%
!! TTCTAGTTCTACTCAATCAG+AGG + chr7.4:40316886-40316905 MS.gene055189:CDS 35.0%
!! TTTTTGAAGAAGTCGTGTGA+TGG - chr7.4:40317026-40317045 None:intergenic 35.0%
!!! GTTTTTTTCCTACCTGTTGA+TGG + chr7.4:40318132-40318151 MS.gene055189:CDS 35.0%
AAGAGTCATGCCAAACTCAA+TGG + chr7.4:40317405-40317424 MS.gene055189:CDS 40.0%
AATGTCCTGACGATGAATGT+TGG + chr7.4:40317293-40317312 MS.gene055189:CDS 40.0%
ATTCTTCAGACCAAACTGTG+GGG - chr7.4:40318001-40318020 None:intergenic 40.0%
ATTTGTAAGAGCTGCTGTTG+AGG - chr7.4:40318442-40318461 None:intergenic 40.0%
CAACCATTGGATTGTCATCA+AGG + chr7.4:40317692-40317711 MS.gene055189:CDS 40.0%
CAAGTCATCTGTGACAACAT+AGG - chr7.4:40318178-40318197 None:intergenic 40.0%
CGTCAATGTCACAAAGGAAA+AGG + chr7.4:40317495-40317514 MS.gene055189:CDS 40.0%
CTATGTTGTCACAGATGACT+TGG + chr7.4:40318176-40318195 MS.gene055189:CDS 40.0%
CTGGAAACACAATTCTGCAA+TGG + chr7.4:40317340-40317359 MS.gene055189:CDS 40.0%
GATTCTTCAGACCAAACTGT+GGG - chr7.4:40318002-40318021 None:intergenic 40.0%
GCACCATAGCATACTTGATT+TGG + chr7.4:40317915-40317934 MS.gene055189:CDS 40.0%
GCAGTGTCTAAGCATATTGA+AGG + chr7.4:40318407-40318426 MS.gene055189:intron 40.0%
GGTCTTAATGAGGTATGTGA+TGG + chr7.4:40318291-40318310 MS.gene055189:intron 40.0%
TAATCCTCGAAGGAGTTATG+TGG - chr7.4:40317163-40317182 None:intergenic 40.0%
TCAACAGCAGCTCTTACAAA+TGG + chr7.4:40318441-40318460 MS.gene055189:CDS 40.0%
TCACATAACCATCAACAGGT+AGG - chr7.4:40318143-40318162 None:intergenic 40.0%
TGATTCTTCAGACCAAACTG+TGG - chr7.4:40318003-40318022 None:intergenic 40.0%
TGGTGATTGAAGAACAAGAG+GGG + chr7.4:40318475-40318494 MS.gene055189:CDS 40.0%
TGTTTCCAGACCAACTACAT+TGG - chr7.4:40317329-40317348 None:intergenic 40.0%
! CTTGATGACAATCCAATGGT+TGG - chr7.4:40317694-40317713 None:intergenic 40.0%
! CTTGGTGATTGAAGAACAAG+AGG + chr7.4:40318473-40318492 MS.gene055189:CDS 40.0%
! GTATGTGCCATTGAAACTTG+TGG + chr7.4:40316910-40316929 MS.gene055189:CDS 40.0%
! TACAAATGGTCTTGGACACT+TGG + chr7.4:40318455-40318474 MS.gene055189:CDS 40.0%
! TTCATCGTCAGGACATTTTG+TGG - chr7.4:40317290-40317309 None:intergenic 40.0%
! TTTGGTATGCTCCAGAGTTT+TGG + chr7.4:40317439-40317458 MS.gene055189:CDS 40.0%
!! ACCTGTTGATGGTTATGTGA+AGG + chr7.4:40318143-40318162 MS.gene055189:CDS 40.0%
!! CCTGTTGATGGTTATGTGAA+GGG + chr7.4:40318144-40318163 MS.gene055189:CDS 40.0%
!! TGTTCTTTGGGAAGTATCGA+TGG + chr7.4:40317889-40317908 MS.gene055189:CDS 40.0%
AGAGCTGCAATAATCCTCGA+AGG - chr7.4:40317173-40317192 None:intergenic 45.0%
AGTCGTGTGATGGTTCCAAA+TGG - chr7.4:40317016-40317035 None:intergenic 45.0%
ATACGCACAACACCTCCTAA+AGG - chr7.4:40317856-40317875 None:intergenic 45.0%
CCAAACTGTGGGGATAAATG+AGG - chr7.4:40317991-40318010 None:intergenic 45.0%
CCCTTCACATAACCATCAAC+AGG - chr7.4:40318147-40318166 None:intergenic 45.0%
CCTCATTTATCCCCACAGTT+TGG + chr7.4:40317988-40318007 MS.gene055189:CDS 45.0%
GAATTGCGTCTGCAAACTCA+TGG - chr7.4:40317816-40317835 None:intergenic 45.0%
GCAGCTCTTACAAATGGTCT+TGG + chr7.4:40318447-40318466 MS.gene055189:CDS 45.0%
GGTGATTGAAGAACAAGAGG+GGG + chr7.4:40318476-40318495 MS.gene055189:CDS 45.0%
GTGATTGAAGAACAAGAGGG+GGG + chr7.4:40318477-40318496 MS.gene055189:CDS 45.0%
TGGTCCACCACAAGTTTCAA+TGG - chr7.4:40316920-40316939 None:intergenic 45.0%
TGTCAAGATCTGCCACACTT+TGG - chr7.4:40317096-40317115 None:intergenic 45.0%
! CCTGACGATGAATGTTGGTT+CGG + chr7.4:40317298-40317317 MS.gene055189:CDS 45.0%
! GGTGTTGTGCGTATGTTTGA+AGG + chr7.4:40317862-40317881 MS.gene055189:CDS 45.0%
! TGTGCCATTGAAACTTGTGG+TGG + chr7.4:40316913-40316932 MS.gene055189:CDS 45.0%
!! GGATCTTCTGAAGTGCTCAT+TGG + chr7.4:40317627-40317646 MS.gene055189:CDS 45.0%
CCGAACCAACATTCATCGTC+AGG - chr7.4:40317301-40317320 None:intergenic 50.0%
GCAACCACATAACTCCTTCG+AGG + chr7.4:40317156-40317175 MS.gene055189:CDS 50.0%
! TTTTCACGTGGCCGACGAAT+TGG - chr7.4:40318033-40318052 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40316881 40318551 40316881 ID=MS.gene055189
chr7.4 mRNA 40316881 40318551 40316881 ID=MS.gene055189.t1;Parent=MS.gene055189
chr7.4 exon 40316881 40317516 40316881 ID=MS.gene055189.t1.exon1;Parent=MS.gene055189.t1
chr7.4 CDS 40316881 40317516 40316881 ID=cds.MS.gene055189.t1;Parent=MS.gene055189.t1
chr7.4 exon 40317622 40318302 40317622 ID=MS.gene055189.t1.exon2;Parent=MS.gene055189.t1
chr7.4 CDS 40317622 40318302 40317622 ID=cds.MS.gene055189.t1;Parent=MS.gene055189.t1
chr7.4 exon 40318411 40318551 40318411 ID=MS.gene055189.t1.exon3;Parent=MS.gene055189.t1
chr7.4 CDS 40318411 40318551 40318411 ID=cds.MS.gene055189.t1;Parent=MS.gene055189.t1
Gene Sequence

>MS.gene055189

ATGACTTCTAGTTCTACTCAATCAGAGGTGTATGTGCCATTGAAACTTGTGGTGGACCAAGAGAGCAACAAAGTTTTATTTGCTGAAGCAGGAAAGGACTTTGTTGATGTTCTATTTAGCTTCTTAACATTACCATTTGGAACCATCACACGACTTCTTCAAAAAGAGTCAACAATGGGATCTGTTACAATTGGTTGTATTAACAATCTCTACCAAAGTGTGGCAGATCTTGACAAAGATTGTATGAAAGAAGAGAAAGGCAAAGAAATGTTATTGCAACCACATAACTCCTTCGAGGATTATTGCAGCTCTCTTAAACTAAACATTGATGACACAGAGCCCACAAAGTATTACAAGTGTATTGAGAGAGTTTTTCCATGCGATTTCGTTGATGTTTTGAGCACTTCCACAAAATGTCCTGACGATGAATGTTGGTTCGGAAAAACCAATGTAGTTGGTCTGGAAACACAATTCTGCAATGGATTTGTTAAAGATGGTGCATCTTTTGTTATTACTGATGATTTAAGAGTCATGCCAAACTCAATGGATATTACAAGCTTTGGTATGCTCCAGAGTTTTGGAATAAAGCACACTAGTTTGGTAAAGGAAATGATCGTCAATGTCACAAAGGAAAAGGTTTTCTATTTACTATTTCGTGCTCTTTATTTATTTCTAAATGCAACATTTTTTTTTATTTCTTCAATATTTCCTTTTTGTTTGATTGTTTAATATTCTATATAGATACTGGATCTTCTGAAGTGCTCATTGGTTTCTAAGTCAACTTTGACGGATTTGTTTTTAAGAATGAAACCAACCATTGGATTGTCATCAAGGATTTTCTGTTGTGATGTTGAAAACGCTAAGGACATTCAATTCACAATTAAGCTGGTTATTAGAAAATCAGATGGGAAAATATTGTATGCTCAAGGGGGCCATGAGTTTGCAGACGCAATTCTAAGTTTTCTGACTTTTCCTTTAGGAGGTGTTGTGCGTATGTTTGAAGGAAACTGTTCTTTGGGAAGTATCGATGGTTTGCACCATAGCATACTTGATTTGGATGAAAACAAATATTTTGTGACAAAAGAAGCCAAGAATAGAATTGTTGATCCTCATTTATCCCCACAGTTTGGTCTGAAGAATCAGATTTTTCCAATTCGTCGGCCACGTGAAAAGTTTTATTGTCATGGCAATTCCATAACTTGTGAAAAGATAGATTATTTTGATTGGACTGATGATACAGATTATAATCTCGTTTTTTTCCTACCTGTTGATGGTTATGTGAAGGGACCAAAAACCTATGTTGTCACAGATGACTTGGTTTTAAAAGAGTCGTCTCCAACTTCAGTTTTACATTTAATCAACCATTTTCAAACTCCTTTGAATGACTTGAAGGAAAAGGTTATCAACATTGGTCTTAATGAGGTATGTGATGGTAATGCCTATATAGATTCCAATTTCAAATTTTTGTGCTTCTGTGTAATGCCTATTGTAAACTATTGCTCCTATTAACTTGTTATTTTTCTTGTGCAGTGTCTAAGCATATTGAAGGCATCTTTGACCTCAACAGCAGCTCTTACAAATGGTCTTGGACACTTGGTGATTGAAGAACAAGAGGGGGGATCTGTCAACTTACAAAGATCTGTTAAGAAAGATCTGTTTCATTTAATTTAA
Protein sequence

>MS.gene055189.t1

MTSSSTQSEVYVPLKLVVDQESNKVLFAEAGKDFVDVLFSFLTLPFGTITRLLQKESTMGSVTIGCINNLYQSVADLDKDCMKEEKGKEMLLQPHNSFEDYCSSLKLNIDDTEPTKYYKCIERVFPCDFVDVLSTSTKCPDDECWFGKTNVVGLETQFCNGFVKDGASFVITDDLRVMPNSMDITSFGMLQSFGIKHTSLVKEMIVNVTKEKILDLLKCSLVSKSTLTDLFLRMKPTIGLSSRIFCCDVENAKDIQFTIKLVIRKSDGKILYAQGGHEFADAILSFLTFPLGGVVRMFEGNCSLGSIDGLHHSILDLDENKYFVTKEAKNRIVDPHLSPQFGLKNQIFPIRRPREKFYCHGNSITCEKIDYFDWTDDTDYNLVFFLPVDGYVKGPKTYVVTDDLVLKESSPTSVLHLINHFQTPLNDLKEKVINIGLNECLSILKASLTSTAALTNGLGHLVIEEQEGGSVNLQRSVKKDLFHLI