AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45239

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45239.t1 MTR_7g012680 78.093 493 36 3 1 463 1 451 0.0 746
MS.gene45239.t1 MTR_7g066570 69.400 500 114 4 1 469 1 492 0.0 665
MS.gene45239.t1 MTR_7g058710 54.321 486 188 8 6 463 4 483 3.04e-166 478
MS.gene45239.t1 MTR_7g066260 50.298 503 180 9 6 471 7 476 1.45e-151 441
MS.gene45239.t1 MTR_7g066340 50.600 500 177 7 5 470 3 466 3.19e-141 414
MS.gene45239.t1 MTR_7g066350 53.027 479 152 12 10 453 5 445 1.05e-140 412
MS.gene45239.t1 MTR_7g066350 31.169 231 140 9 230 449 3 225 4.09e-15 77.8
MS.gene45239.t1 MTR_7g066400 50.737 475 164 13 3 453 5 433 1.29e-136 401
MS.gene45239.t1 MTR_1g041315 49.284 489 162 10 1 441 1 451 1.08e-135 400
MS.gene45239.t1 MTR_1g041315 25.641 234 151 7 233 449 14 241 6.17e-12 68.2
MS.gene45239.t1 MTR_7g066580 46.791 483 182 9 20 463 1 447 1.84e-129 383
MS.gene45239.t1 MTR_7g066430 42.191 493 238 10 14 464 4 491 1.37e-112 341
MS.gene45239.t1 MTR_7g066360 44.401 509 201 12 1 472 1 464 3.13e-110 335
MS.gene45239.t1 MTR_2g029400 43.271 483 160 9 1 447 1 405 6.87e-107 323
MS.gene45239.t1 MTR_7g066290 43.381 491 184 9 1 456 1 432 1.18e-106 324
MS.gene45239.t1 MTR_7g066310 42.394 493 153 10 11 471 4 397 1.55e-106 323
MS.gene45239.t1 MTR_7g066410 39.961 508 232 12 15 456 11 511 9.69e-99 306
MS.gene45239.t1 MTR_7g066280 42.923 431 197 12 63 471 1 404 6.78e-91 283
MS.gene45239.t1 MTR_7g058700 51.780 309 95 6 34 323 569 842 1.19e-87 287
MS.gene45239.t1 MTR_7g058700 50.000 82 41 0 382 463 846 927 6.66e-16 81.3
MS.gene45239.t1 MTR_7g066680 52.649 302 101 4 187 453 40 334 1.02e-84 264
MS.gene45239.t1 MTR_7g062280 35.039 508 260 13 6 463 4 491 2.42e-81 260
MS.gene45239.t1 MTR_7g062300 34.490 490 263 13 1 453 1 469 5.63e-79 254
MS.gene45239.t1 MTR_7g063660 35.628 494 249 13 14 463 9 477 8.26e-79 253
MS.gene45239.t1 MTR_7g063660 26.141 241 136 8 228 449 4 221 1.81e-12 69.7
MS.gene45239.t1 MTR_7g063840 35.329 501 252 16 5 463 3 473 9.29e-79 253
MS.gene45239.t1 MTR_7g063880 36.706 504 246 18 1 465 1 470 1.60e-76 247
MS.gene45239.t1 MTR_7g063920 34.343 495 234 12 1 463 1 436 1.86e-74 241
MS.gene45239.t1 MTR_3g065200 36.463 458 216 10 12 444 1 408 3.10e-74 241
MS.gene45239.t1 MTR_7g063820 36.842 494 247 17 15 463 11 484 1.75e-73 239
MS.gene45239.t1 MTR_7g063900 33.839 461 254 11 14 434 10 459 7.20e-72 236
MS.gene45239.t1 MTR_1g014060 63.750 160 58 0 34 193 50 209 2.84e-69 226
MS.gene45239.t1 MTR_1g014060 46.479 284 123 5 180 463 136 390 4.95e-61 204
MS.gene45239.t1 MTR_1g014060 28.302 212 125 9 245 443 12 209 6.65e-11 64.3
MS.gene45239.t1 MTR_3g007740 36.247 469 237 14 14 456 9 441 1.29e-68 226
MS.gene45239.t1 MTR_4g019310 34.406 497 257 16 11 453 5 486 2.31e-68 227
MS.gene45239.t1 MTR_7g063890 35.547 512 264 16 2 464 11 505 3.02e-67 224
MS.gene45239.t1 MTR_4g017830 33.146 534 263 16 1 465 1 509 7.17e-65 218
MS.gene45239.t1 MTR_7g063670 34.462 502 242 18 1 463 4 457 1.19e-64 216
MS.gene45239.t1 MTR_7g063830 32.495 477 231 13 15 453 11 434 1.05e-60 205
MS.gene45239.t1 MTR_4g019340 33.535 495 233 14 15 445 39 501 2.95e-60 206
MS.gene45239.t1 MTR_4g017610 33.778 450 251 16 17 449 52 471 1.61e-56 195
MS.gene45239.t1 MTR_4g017410 32.381 525 251 19 8 464 3 491 1.51e-55 193
MS.gene45239.t1 MTR_4g017550 32.766 470 257 15 17 455 30 471 2.61e-55 191
MS.gene45239.t1 MTR_4g017440 31.638 531 272 16 1 463 1 508 4.18e-53 186
MS.gene45239.t1 MTR_7g066480 37.003 327 162 6 13 303 15 333 1.07e-52 183
MS.gene45239.t1 MTR_7g066480 49.495 99 44 2 366 459 326 423 1.45e-16 82.0
MS.gene45239.t1 MTR_4g017470 31.034 522 247 13 7 464 5 477 1.76e-48 174
MS.gene45239.t1 MTR_7g066490 36.111 324 153 7 14 303 16 319 3.96e-42 155
MS.gene45239.t1 MTR_7g066490 53.659 82 38 0 378 459 328 409 1.70e-16 81.6
MS.gene45239.t1 MTR_7g063720 40.359 223 108 4 233 453 23 222 9.25e-41 146
MS.gene45239.t1 MTR_7g063850 29.503 322 179 8 157 465 4 290 7.21e-28 112
MS.gene45239.t1 MTR_8g023240 25.469 373 251 14 86 449 127 481 6.54e-24 105
MS.gene45239.t1 MTR_7g100420 34.432 273 163 9 184 453 134 393 1.04e-22 100
MS.gene45239.t1 MTR_8g445860 31.004 229 118 6 14 206 13 237 1.20e-21 94.0
MS.gene45239.t1 MTR_8g445860 29.075 227 142 5 233 449 13 230 1.20e-19 88.2
MS.gene45239.t1 MTR_7g062270 32.796 186 84 7 1 153 1 178 3.37e-21 95.5
MS.gene45239.t1 MTR_0150s0010 30.667 225 146 6 232 449 9 230 1.43e-20 90.9
MS.gene45239.t1 MTR_0150s0010 29.752 242 121 6 8 207 4 238 1.86e-19 87.8
MS.gene45239.t1 MTR_1g115440 29.661 236 142 6 228 449 6 231 2.43e-20 90.5
MS.gene45239.t1 MTR_1g115440 29.694 229 126 4 14 207 11 239 5.48e-18 83.6
MS.gene45239.t1 MTR_7g063690 31.203 266 133 9 1 260 1 222 7.50e-19 86.3
MS.gene45239.t1 MTR_7g066390 54.878 82 37 0 386 467 51 132 7.84e-19 83.6
MS.gene45239.t1 MTR_2g067310 38.806 134 42 3 34 167 97 190 2.26e-15 75.9
MS.gene45239.t1 MTR_7g063760 45.833 72 38 1 393 463 2 73 4.06e-13 64.7
MS.gene45239.t1 MTR_1g115455 27.966 236 115 9 14 206 9 232 4.34e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45239.t1 AT5G01120 28.926 484 291 12 15 453 10 485 9.08e-47 169
MS.gene45239.t1 AT5G01140 29.935 461 272 10 14 449 9 443 9.59e-47 169
MS.gene45239.t1 AT5G01130 29.938 481 253 10 14 456 9 443 9.41e-45 162
MS.gene45239.t1 AT3G09110 31.761 318 174 7 14 295 9 319 5.34e-42 152
MS.gene45239.t1 AT5G01150 28.513 491 276 12 14 453 9 475 6.51e-41 153
MS.gene45239.t1 AT5G01150 27.119 236 148 8 228 450 4 228 2.76e-15 78.6
MS.gene45239.t1 AT5G43240 27.856 499 281 15 15 453 10 489 1.59e-39 149
MS.gene45239.t1 AT5G43240 27.856 499 281 15 15 453 10 489 1.59e-39 149
MS.gene45239.t1 AT5G43240 27.856 499 281 15 15 453 10 489 1.59e-39 149
MS.gene45239.t1 AT3G09140 29.225 503 263 15 14 449 9 485 1.64e-39 149
MS.gene45239.t1 AT3G09140 27.872 531 262 16 14 449 9 513 7.90e-35 137
MS.gene45239.t1 AT3G09120 30.032 313 175 6 14 287 6 313 3.13e-34 131
MS.gene45239.t1 AT3G09120 28.761 226 150 7 232 449 5 227 1.28e-11 65.9
MS.gene45239.t1 AT5G37320 26.185 443 275 14 35 453 61 475 7.47e-26 110
MS.gene45239.t1 AT5G43240 28.453 362 214 11 129 469 18 355 8.34e-23 100

Find 72 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATCATCATTTGTTAA+AGG 0.213458 7.3:+85571235 MS.gene45239:CDS
CTATATTCAGTTTGAGCTTC+TGG 0.233458 7.3:-85570246 None:intergenic
TCAACATCTGCTTTGCAATA+TGG 0.234722 7.3:+85571513 MS.gene45239:CDS
TAATCTTCCATCGAGTTTCT+AGG 0.245861 7.3:-85570220 None:intergenic
GATTATTCTCACGATAAAAT+TGG 0.250141 7.3:+85571160 MS.gene45239:CDS
GAAGAAAGAGTTATCAAAAT+TGG 0.271117 7.3:+85571361 MS.gene45239:CDS
AAAAGTTCCTCTATCTGATT+TGG 0.272432 7.3:+85571339 MS.gene45239:CDS
TCTGAACCGAAGAAACAATT+TGG 0.280167 7.3:+85570727 MS.gene45239:CDS
TAAGTATGACAGTACTTTAT+AGG 0.316812 7.3:-85571088 None:intergenic
ATTGAGCAGCATTTCTTTGC+AGG 0.322996 7.3:-85570197 None:intergenic
GTTCTTCTTTAAAATAAAAC+TGG 0.335816 7.3:-85570690 None:intergenic
AACAATTTGGAGTTTCTGAT+TGG 0.340068 7.3:+85570740 MS.gene45239:CDS
AAAGTTTGTACCATTAGAAT+TGG 0.341082 7.3:+85571192 MS.gene45239:CDS
CAAAGCAGCCTTTGAGGTTA+AGG 0.345875 7.3:-85570666 None:intergenic
GAAACTCCAAATTGTTTCTT+CGG 0.358111 7.3:-85570733 None:intergenic
GGTTGATCATTTCGAATTGC+AGG 0.360043 7.3:-85571036 None:intergenic
TGTGACATTAAATATATATC+TGG 0.369419 7.3:-85570977 None:intergenic
AATATTGAAGCAGTGAGATT+TGG 0.383738 7.3:+85570112 MS.gene45239:intron
CAAATTCTGTTTGTTGAAGC+CGG 0.398212 7.3:+85570827 MS.gene45239:CDS
AACTTGACCAACAATATCTA+TGG 0.426096 7.3:+85570167 MS.gene45239:CDS
TCAGTCACCATGTAAGTTGA+TGG 0.432286 7.3:-85571259 None:intergenic
GCCACGGCTCTCCACCTTAA+CGG 0.436920 7.3:-85571556 None:intergenic
TCGAATTGCAGGGCAATAAG+AGG 0.441011 7.3:-85571025 None:intergenic
TCATGATCAGCCAATTCTAA+TGG 0.447075 7.3:-85571202 None:intergenic
CTTTCTTCCAAATCAGATAG+AGG 0.448463 7.3:-85571346 None:intergenic
TTCTAACCTTCCCCTTAGGA+GGG 0.463532 7.3:+85570879 MS.gene45239:CDS
TTTCTAACCTTCCCCTTAGG+AGG 0.466529 7.3:+85570878 MS.gene45239:CDS
GGTTCAGATTAACAACAAAT+CGG 0.467270 7.3:-85570712 None:intergenic
ACTGGTCAAAGCAGCCTTTG+AGG 0.467868 7.3:-85570672 None:intergenic
GAAATTTAGAAGAACCGTTA+AGG 0.468968 7.3:+85571542 MS.gene45239:CDS
TTACGTCTGCTGCAAAAGCT+TGG 0.475407 7.3:+85570496 MS.gene45239:CDS
AAATTCTGTTTGTTGAAGCC+GGG 0.488713 7.3:+85570828 MS.gene45239:CDS
GAATATTCAAACCTAGAAAA+CGG 0.489274 7.3:+85570400 MS.gene45239:CDS
ACTTACTATGATCACAAAAG+TGG 0.494646 7.3:+85571106 MS.gene45239:CDS
CATGTGTAAAACCCCTCCTA+AGG 0.499269 7.3:-85570891 None:intergenic
GTTATCAATGCAGCTTAAAG+AGG 0.502618 7.3:-85570927 None:intergenic
CTCTTTCTTGTCGATATCAA+CGG 0.507273 7.3:-85570551 None:intergenic
GGTAAGGTAGCTACACCAAT+CGG 0.514776 7.3:-85571067 None:intergenic
TAAAGGACCATCAACTTACA+TGG 0.516835 7.3:+85571252 MS.gene45239:CDS
GAATTGGGATTGCAGAAGAA+AGG 0.522878 7.3:+85570300 MS.gene45239:CDS
CAAGTTATCCTTAACCTCAA+AGG 0.525899 7.3:+85570658 MS.gene45239:CDS
CGTTGATATCGACAAGAAAG+AGG 0.528677 7.3:+85570552 MS.gene45239:CDS
TCTAACCTTCCCCTTAGGAG+GGG 0.532923 7.3:+85570880 MS.gene45239:CDS
ATGACAGTACTTTATAGGTA+AGG 0.538944 7.3:-85571083 None:intergenic
AGAGTTCTGTACGCTGAAGC+TGG 0.539474 7.3:+85570008 MS.gene45239:CDS
AGTTATCAAAATTGGTGTGA+AGG 0.549919 7.3:+85571369 MS.gene45239:CDS
TATGTGACCATAGATATTGT+TGG 0.554667 7.3:-85570174 None:intergenic
ATGTGTAAAACCCCTCCTAA+GGG 0.556431 7.3:-85570890 None:intergenic
TATCAAAATTGGTGTGAAGG+AGG 0.560634 7.3:+85571372 MS.gene45239:CDS
GTTGATCATTTCGAATTGCA+GGG 0.564957 7.3:-85571035 None:intergenic
ACTCAATCAGTTGAACAAGT+TGG 0.569191 7.3:+85569945 MS.gene45239:CDS
AGCTACCTTCTGACGAGGAT+AGG 0.572949 7.3:+85570765 MS.gene45239:CDS
ATCAACCAACTCTTACCGAT+TGG 0.574321 7.3:+85571052 MS.gene45239:CDS
ATTTAGAAGAACCGTTAAGG+TGG 0.583305 7.3:+85571545 MS.gene45239:CDS
AAAGTCAATAAAATCATCCC+CGG 0.589690 7.3:-85570846 None:intergenic
ATCTGCCTATCCTCGTCAGA+AGG 0.594880 7.3:-85570770 None:intergenic
CTTACTATGATCACAAAAGT+GGG 0.603766 7.3:+85571107 MS.gene45239:CDS
TCGCACACAAAATACTGCAC+AGG 0.606391 7.3:-85570277 None:intergenic
GCTCAATCCTAGAAACTCGA+TGG 0.610851 7.3:+85570213 MS.gene45239:CDS
TAAAACCCCTCCTAAGGGGA+AGG 0.611425 7.3:-85570885 None:intergenic
CTACACCAATCGGTAAGAGT+TGG 0.612155 7.3:-85571057 None:intergenic
AATTCTGTTTGTTGAAGCCG+GGG 0.617462 7.3:+85570829 MS.gene45239:CDS
ACCGTTAAGGTGGAGAGCCG+TGG 0.619881 7.3:+85571555 MS.gene45239:CDS
TTTCTAGGTTTGAATATTCG+GGG 0.622034 7.3:-85570396 None:intergenic
TATCAATCTTACAAAATCCG+CGG 0.645310 7.3:+85571138 MS.gene45239:CDS
GAGAAGCTACGCTACAGCCA+CGG 0.657267 7.3:-85571572 None:intergenic
ATATTGCAAAGCAGATGTTG+AGG 0.659281 7.3:-85571511 None:intergenic
TGTGTAAAACCCCTCCTAAG+GGG 0.668372 7.3:-85570889 None:intergenic
GATATATATTTAATGTCACA+AGG 0.683736 7.3:+85570980 MS.gene45239:CDS
TGGAGAGCTACCTTCTGACG+AGG 0.724231 7.3:+85570760 MS.gene45239:CDS
GATTGCAGAAGAAAGGACAG+TGG 0.732973 7.3:+85570307 MS.gene45239:CDS
TTTATCGTGAGAATAATCCG+CGG 0.765639 7.3:-85571155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTCATTAAATGTTACA+GGG + chr7.3:85571462-85571481 MS.gene45239:intron 20.0%
!! GATATATATTTAATGTCACA+AGG + chr7.3:85570980-85570999 MS.gene45239:CDS 20.0%
!! TGTGACATTAAATATATATC+TGG - chr7.3:85570980-85570999 None:intergenic 20.0%
!!! CTCTAATTGATTATTTCTAT+AGG + chr7.3:85570622-85570641 MS.gene45239:intron 20.0%
!!! GTTCTTCTTTAAAATAAAAC+TGG - chr7.3:85570693-85570712 None:intergenic 20.0%
!!! TTGTTCATTTGATTTTCTTA+CGG - chr7.3:85570810-85570829 None:intergenic 20.0%
! AAAGTTTGTACCATTAGAAT+TGG + chr7.3:85571192-85571211 MS.gene45239:CDS 25.0%
! GAAGAAAGAGTTATCAAAAT+TGG + chr7.3:85571361-85571380 MS.gene45239:CDS 25.0%
! GAATATTCAAACCTAGAAAA+CGG + chr7.3:85570400-85570419 MS.gene45239:CDS 25.0%
! GATTATTCTCACGATAAAAT+TGG + chr7.3:85571160-85571179 MS.gene45239:CDS 25.0%
! GCTTATTCATTAAATGTTAC+AGG + chr7.3:85571461-85571480 MS.gene45239:intron 25.0%
! TAAGTATGACAGTACTTTAT+AGG - chr7.3:85571091-85571110 None:intergenic 25.0%
! TATTGCAAGATTAATGTCTA+AGG + chr7.3:85570084-85570103 MS.gene45239:intron 25.0%
!! AAATGATGATTTTGCAATAG+AGG - chr7.3:85571230-85571249 None:intergenic 25.0%
!! GCAAAATCATCATTTGTTAA+AGG + chr7.3:85571235-85571254 MS.gene45239:CDS 25.0%
!! GTTTTCTAGGTTTGAATATT+CGG - chr7.3:85570401-85570420 None:intergenic 25.0%
!! TTTTCTAGGTTTGAATATTC+GGG - chr7.3:85570400-85570419 None:intergenic 25.0%
AAAAGTTCCTCTATCTGATT+TGG + chr7.3:85571339-85571358 MS.gene45239:CDS 30.0%
AAAGTCAATAAAATCATCCC+CGG - chr7.3:85570849-85570868 None:intergenic 30.0%
AACTTGACCAACAATATCTA+TGG + chr7.3:85570167-85570186 MS.gene45239:CDS 30.0%
AATATTGAAGCAGTGAGATT+TGG + chr7.3:85570112-85570131 MS.gene45239:intron 30.0%
AATCTTGCAATAGTACTTAG+AGG - chr7.3:85570076-85570095 None:intergenic 30.0%
ACTTACTATGATCACAAAAG+TGG + chr7.3:85571106-85571125 MS.gene45239:CDS 30.0%
AGGAACAAAAAATGCTATTG+TGG + chr7.3:85570349-85570368 MS.gene45239:CDS 30.0%
AGTTATCAAAATTGGTGTGA+AGG + chr7.3:85571369-85571388 MS.gene45239:CDS 30.0%
ATGACAGTACTTTATAGGTA+AGG - chr7.3:85571086-85571105 None:intergenic 30.0%
CTTACTATGATCACAAAAGT+GGG + chr7.3:85571107-85571126 MS.gene45239:CDS 30.0%
GAAATTTAGAAGAACCGTTA+AGG + chr7.3:85571542-85571561 MS.gene45239:CDS 30.0%
GGAACAAAAAATGCTATTGT+GGG + chr7.3:85570350-85570369 MS.gene45239:CDS 30.0%
GGTTCAGATTAACAACAAAT+CGG - chr7.3:85570715-85570734 None:intergenic 30.0%
TATCAATCTTACAAAATCCG+CGG + chr7.3:85571138-85571157 MS.gene45239:CDS 30.0%
TATGTGACCATAGATATTGT+TGG - chr7.3:85570177-85570196 None:intergenic 30.0%
TTTCTAGGTTTGAATATTCG+GGG - chr7.3:85570399-85570418 None:intergenic 30.0%
! AACAATTTGGAGTTTCTGAT+TGG + chr7.3:85570740-85570759 MS.gene45239:CDS 30.0%
! GAAACTCCAAATTGTTTCTT+CGG - chr7.3:85570736-85570755 None:intergenic 30.0%
! TCTAATGGTACAAACTTTTC+TGG - chr7.3:85571190-85571209 None:intergenic 30.0%
AAACTTGCCCCAAAAACATT+AGG - chr7.3:85570478-85570497 None:intergenic 35.0%
ACTCAATCAGTTGAACAAGT+TGG + chr7.3:85569945-85569964 MS.gene45239:CDS 35.0%
ATATTGCAAAGCAGATGTTG+AGG - chr7.3:85571514-85571533 None:intergenic 35.0%
ATTTAGAAGAACCGTTAAGG+TGG + chr7.3:85571545-85571564 MS.gene45239:CDS 35.0%
CAAGTTATCCTTAACCTCAA+AGG + chr7.3:85570658-85570677 MS.gene45239:CDS 35.0%
CTATATTCAGTTTGAGCTTC+TGG - chr7.3:85570249-85570268 None:intergenic 35.0%
CTCTTTCTTGTCGATATCAA+CGG - chr7.3:85570554-85570573 None:intergenic 35.0%
CTTTCTTCCAAATCAGATAG+AGG - chr7.3:85571349-85571368 None:intergenic 35.0%
GTTATCAATGCAGCTTAAAG+AGG - chr7.3:85570930-85570949 None:intergenic 35.0%
GTTGATCATTTCGAATTGCA+GGG - chr7.3:85571038-85571057 None:intergenic 35.0%
TAAAGGACCATCAACTTACA+TGG + chr7.3:85571252-85571271 MS.gene45239:CDS 35.0%
TAATCTTCCATCGAGTTTCT+AGG - chr7.3:85570223-85570242 None:intergenic 35.0%
TATCAAAATTGGTGTGAAGG+AGG + chr7.3:85571372-85571391 MS.gene45239:CDS 35.0%
TCAACATCTGCTTTGCAATA+TGG + chr7.3:85571513-85571532 MS.gene45239:CDS 35.0%
TCATGATCAGCCAATTCTAA+TGG - chr7.3:85571205-85571224 None:intergenic 35.0%
TCTGAACCGAAGAAACAATT+TGG + chr7.3:85570727-85570746 MS.gene45239:CDS 35.0%
TTTATCGTGAGAATAATCCG+CGG - chr7.3:85571158-85571177 None:intergenic 35.0%
! AAATTCTGTTTGTTGAAGCC+GGG + chr7.3:85570828-85570847 MS.gene45239:CDS 35.0%
! ACGTGATGCCTAATGTTTTT+GGG + chr7.3:85570467-85570486 MS.gene45239:CDS 35.0%
! AGTATTTTGTGTGCGAGAAT+TGG + chr7.3:85570284-85570303 MS.gene45239:CDS 35.0%
! CAAATTCTGTTTGTTGAAGC+CGG + chr7.3:85570827-85570846 MS.gene45239:CDS 35.0%
! CCTTAACAAAACCGTTTTCT+AGG - chr7.3:85570414-85570433 None:intergenic 35.0%
! GTATTTTGTGTGCGAGAATT+GGG + chr7.3:85570285-85570304 MS.gene45239:CDS 35.0%
! TACGTGATGCCTAATGTTTT+TGG + chr7.3:85570466-85570485 MS.gene45239:CDS 35.0%
!! GAGTTTTAGTCGACAAAGAA+AGG + chr7.3:85569982-85570001 MS.gene45239:CDS 35.0%
!! GATGTCGTTTGAGCATTTTT+AGG + chr7.3:85570329-85570348 MS.gene45239:CDS 35.0%
!!! CCTAGAAAACGGTTTTGTTA+AGG + chr7.3:85570411-85570430 MS.gene45239:CDS 35.0%
ATCAACCAACTCTTACCGAT+TGG + chr7.3:85571052-85571071 MS.gene45239:CDS 40.0%
ATGTGTAAAACCCCTCCTAA+GGG - chr7.3:85570893-85570912 None:intergenic 40.0%
ATTGAGCAGCATTTCTTTGC+AGG - chr7.3:85570200-85570219 None:intergenic 40.0%
CGTTGATATCGACAAGAAAG+AGG + chr7.3:85570552-85570571 MS.gene45239:CDS 40.0%
GAATTGGGATTGCAGAAGAA+AGG + chr7.3:85570300-85570319 MS.gene45239:CDS 40.0%
GGTTGATCATTTCGAATTGC+AGG - chr7.3:85571039-85571058 None:intergenic 40.0%
! AATTCTGTTTGTTGAAGCCG+GGG + chr7.3:85570829-85570848 MS.gene45239:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+AGG + chr7.3:85570875-85570894 MS.gene45239:CDS 40.0%
! TCAGTCACCATGTAAGTTGA+TGG - chr7.3:85571262-85571281 None:intergenic 40.0%
!! CGTGATGCCTAATGTTTTTG+GGG + chr7.3:85570468-85570487 MS.gene45239:CDS 40.0%
CATGTGTAAAACCCCTCCTA+AGG - chr7.3:85570894-85570913 None:intergenic 45.0%
CTACACCAATCGGTAAGAGT+TGG - chr7.3:85571060-85571079 None:intergenic 45.0%
GATTGCAGAAGAAAGGACAG+TGG + chr7.3:85570307-85570326 MS.gene45239:CDS 45.0%
GCTCAATCCTAGAAACTCGA+TGG + chr7.3:85570213-85570232 MS.gene45239:CDS 45.0%
GGTAAGGTAGCTACACCAAT+CGG - chr7.3:85571070-85571089 None:intergenic 45.0%
TCGAATTGCAGGGCAATAAG+AGG - chr7.3:85571028-85571047 None:intergenic 45.0%
TCGCACACAAAATACTGCAC+AGG - chr7.3:85570280-85570299 None:intergenic 45.0%
TGTGTAAAACCCCTCCTAAG+GGG - chr7.3:85570892-85570911 None:intergenic 45.0%
TTACGTCTGCTGCAAAAGCT+TGG + chr7.3:85570496-85570515 MS.gene45239:CDS 45.0%
TTCTAACCTTCCCCTTAGGA+GGG + chr7.3:85570879-85570898 MS.gene45239:CDS 45.0%
TTTCTAACCTTCCCCTTAGG+AGG + chr7.3:85570878-85570897 MS.gene45239:CDS 45.0%
! GGGGTTTTACACATGCTTCA+AGG + chr7.3:85570899-85570918 MS.gene45239:CDS 45.0%
!! CAAAGCAGCCTTTGAGGTTA+AGG - chr7.3:85570669-85570688 None:intergenic 45.0%
ACTGGTCAAAGCAGCCTTTG+AGG - chr7.3:85570675-85570694 None:intergenic 50.0%
AGAGTTCTGTACGCTGAAGC+TGG + chr7.3:85570008-85570027 MS.gene45239:CDS 50.0%
AGCTACCTTCTGACGAGGAT+AGG + chr7.3:85570765-85570784 MS.gene45239:CDS 50.0%
ATCTGCCTATCCTCGTCAGA+AGG - chr7.3:85570773-85570792 None:intergenic 50.0%
TAAAACCCCTCCTAAGGGGA+AGG - chr7.3:85570888-85570907 None:intergenic 50.0%
TCTAACCTTCCCCTTAGGAG+GGG + chr7.3:85570880-85570899 MS.gene45239:CDS 50.0%
TCTGTACGCTGAAGCTGGTA+AGG + chr7.3:85570013-85570032 MS.gene45239:intron 50.0%
GAGAAGCTACGCTACAGCCA+CGG - chr7.3:85571575-85571594 None:intergenic 55.0%
TGGAGAGCTACCTTCTGACG+AGG + chr7.3:85570760-85570779 MS.gene45239:CDS 55.0%
ACCGTTAAGGTGGAGAGCCG+TGG + chr7.3:85571555-85571574 MS.gene45239:CDS 60.0%
GCCACGGCTCTCCACCTTAA+CGG - chr7.3:85571559-85571578 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 85569930 85571602 85569930 ID=MS.gene45239
chr7.3 mRNA 85569930 85571602 85569930 ID=MS.gene45239.t1;Parent=MS.gene45239
chr7.3 exon 85569930 85570029 85569930 ID=MS.gene45239.t1.exon1;Parent=MS.gene45239.t1
chr7.3 CDS 85569930 85570029 85569930 ID=cds.MS.gene45239.t1;Parent=MS.gene45239.t1
chr7.3 exon 85570122 85570577 85570122 ID=MS.gene45239.t1.exon2;Parent=MS.gene45239.t1
chr7.3 CDS 85570122 85570577 85570122 ID=cds.MS.gene45239.t1;Parent=MS.gene45239.t1
chr7.3 exon 85570648 85571393 85570648 ID=MS.gene45239.t1.exon3;Parent=MS.gene45239.t1
chr7.3 CDS 85570648 85571393 85570648 ID=cds.MS.gene45239.t1;Parent=MS.gene45239.t1
chr7.3 exon 85571483 85571602 85571483 ID=MS.gene45239.t1.exon4;Parent=MS.gene45239.t1
chr7.3 CDS 85571483 85571602 85571483 ID=cds.MS.gene45239.t1;Parent=MS.gene45239.t1
Gene Sequence

>MS.gene45239

ATGGCTGCAATCGAAACTCAATCAGTTGAACAAGTTGGCAAAGTTAGCTTGCGAGTTTTAGTCGACAAAGAAAGGAATAGAGTTCTGTACGCTGAAGCTGGTAAGGATTTCGTCGATGTTCTCTTTTTAGTTTCTTAACATTGCCTCTAAGTACTATTGCAAGATTAATGTCTAAGGATTCAAATATTGAAGCAGTGAGATTTGGTAGCATTAGCTCGTTGTATCGAAGTGTGTCGAAACTTGACCAACAATATCTATGGTCACATACCTGCAAAGAAATGCTGCTCAATCCTAGAAACTCGATGGAAGATTATTGCCAGAAGCTCAAACTGAATATAGACGACACGCCTGTGCAGTATTTTGTGTGCGAGAATTGGGATTGCAGAAGAAAGGACAGTGGATGTCGTTTGAGCATTTTTAGGAACAAAAAATGCTATTGTGGGAAAGTAATGAATAGAGAAGTATTCCCCGAATATTCAAACCTAGAAAACGGTTTTGTTAAGGAAAATGTTACTTTTATCGTTTCTGATGATCTATACGTGATGCCTAATGTTTTTGGGGCAAGTTTACGTCTGCTGCAAAAGCTTGGACTCGATGCTATTGATGCTATTGAAGAACAAACCGTTGATATCGACAAGAAAGAGGCATGTTGTCTCATCTTCTATATATCTTCTTTAAATATTAATTATTTTCTCTAATTGATTATTTCTATAGGTAGTTGATCTTCTCAAGTTATCCTTAACCTCAAAGGCTGCTTTGACCAGTTTTATTTTAAAGAAGAACCGATTTGTTGTTAATCTGAACCGAAGAAACAATTTGGAGTTTCTGATTGGAGAGCTACCTTCTGACGAGGATAGGCAGATATCTGTGAAAGTTACCGTAAGAAAATCAAATGAACAAATTCTGTTTGTTGAAGCCGGGGATGATTTTATTGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTAGGAGGGGTTTTACACATGCTTCAAGGATTCTCCTCTTTAAGCTGCATTGATAACTTGTACAAGAGCTTGTGCGACTTGAGTCCAGATATATATTTAATGTCACAAGGACTCAAAGATAAACTAACTAAGCCTCTTATTGCCCTGCAATTCGAAATGATCAACCAACTCTTACCGATTGGTGTAGCTACCTTACCTATAAAGTACTGTCATACTTACTATGATCACAAAAGTGGGAAGTGTGTTATCAATCTTACAAAATCCGCGGATTATTCTCACGATAAAATTGGTTTTCCAGAAAAGTTTGTACCATTAGAATTGGCTGATCATGATTCCTCTATTGCAAAATCATCATTTGTTAAAGGACCATCAACTTACATGGTGACTGATAGCTTGTTTGTGAGTCTAATGTCGTCAATATCTGCAATGTCATTTCTCAAAAGATCAAAAGTTCCTCTATCTGATTTGGAAGAAAGAGTTATCAAAATTGGTGTGAAGGAGGTAAGCATTTTCATAAGACATGTAATTTATCGTTAATTAGTTTCATTTGCTTACTTCAAGCTTACTAGCTTATTCATTAAATGTTACAGGGACTTAGCATATTAAAAGCTTCTTTGACCTCAACATCTGCTTTGCAATATGGATTGAAGAAATTTAGAAGAACCGTTAAGGTGGAGAGCCGTGGCTGTAGCGTAGCTTCTCTAGATTAG
Protein sequence

>MS.gene45239.t1

MAAIETQSVEQVGKVSLRVLVDKERNRVLYAEAAVRFGSISSLYRSVSKLDQQYLWSHTCKEMLLNPRNSMEDYCQKLKLNIDDTPVQYFVCENWDCRRKDSGCRLSIFRNKKCYCGKVMNREVFPEYSNLENGFVKENVTFIVSDDLYVMPNVFGASLRLLQKLGLDAIDAIEEQTVDIDKKEAFDLLKLSLTSKAALTSFILKKNRFVVNLNRRNNLEFLIGELPSDEDRQISVKVTVRKSNEQILFVEAGDDFIDFVFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSLCDLSPDIYLMSQGLKDKLTKPLIALQFEMINQLLPIGVATLPIKYCHTYYDHKSGKCVINLTKSADYSHDKIGFPEKFVPLELADHDSSIAKSSFVKGPSTYMVTDSLFVSLMSSISAMSFLKRSKVPLSDLEERVIKIGVKEGLSILKASLTSTSALQYGLKKFRRTVKVESRGCSVASLD