AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77317

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77317.t1 MTR_7g066260 54.923 457 116 10 2 374 13 463 1.30e-151 437
MS.gene77317.t1 MTR_7g066290 50.333 451 117 11 2 374 13 434 5.24e-122 359
MS.gene77317.t1 MTR_7g066340 47.321 448 158 8 2 374 10 454 2.14e-120 357
MS.gene77317.t1 MTR_7g012680 50.115 435 153 10 2 373 12 445 6.45e-119 352
MS.gene77317.t1 MTR_7g066360 49.889 449 133 9 5 374 15 450 2.00e-118 352
MS.gene77317.t1 MTR_7g066570 47.669 472 142 11 3 373 13 480 2.38e-118 355
MS.gene77317.t1 MTR_7g066350 48.533 443 149 10 2 369 7 445 3.24e-114 340
MS.gene77317.t1 MTR_1g014060 48.421 380 173 7 13 373 9 384 2.08e-101 305
MS.gene77317.t1 MTR_1g041315 43.792 443 159 9 2 357 12 451 4.45e-101 308
MS.gene77317.t1 MTR_7g058710 42.292 480 157 10 2 373 10 477 2.27e-99 303
MS.gene77317.t1 MTR_7g066310 45.522 402 168 8 2 374 5 384 6.79e-98 297
MS.gene77317.t1 MTR_2g029400 46.210 409 158 9 2 363 12 405 1.33e-96 293
MS.gene77317.t1 MTR_7g066400 41.834 447 154 10 4 369 12 433 1.15e-95 293
MS.gene77317.t1 MTR_7g066580 41.834 447 169 12 10 370 1 442 1.96e-90 279
MS.gene77317.t1 MTR_7g058700 43.925 428 133 9 16 373 531 921 4.31e-89 288
MS.gene77317.t1 MTR_7g066430 35.876 485 199 11 1 373 1 485 1.59e-78 250
MS.gene77317.t1 MTR_7g066410 36.183 503 186 13 5 373 11 512 6.13e-77 246
MS.gene77317.t1 MTR_7g062280 35.983 478 198 10 3 373 9 485 3.22e-72 233
MS.gene77317.t1 MTR_7g063920 36.564 454 172 8 3 373 10 430 2.30e-70 227
MS.gene77317.t1 MTR_7g062300 35.974 467 197 11 3 372 11 472 9.61e-70 226
MS.gene77317.t1 MTR_7g063820 37.076 472 194 13 3 373 9 478 7.47e-69 224
MS.gene77317.t1 MTR_7g063880 37.255 459 196 16 3 374 10 463 4.00e-67 219
MS.gene77317.t1 MTR_7g063660 35.032 471 199 12 3 373 8 471 1.67e-65 216
MS.gene77317.t1 MTR_7g066480 35.828 441 179 10 4 374 16 422 3.45e-65 213
MS.gene77317.t1 MTR_7g063830 35.604 455 190 11 3 376 9 441 1.06e-64 213
MS.gene77317.t1 MTR_7g063840 34.783 460 206 10 5 373 11 467 1.52e-64 213
MS.gene77317.t1 MTR_7g063900 36.555 476 195 12 3 373 9 482 3.46e-63 210
MS.gene77317.t1 MTR_7g066490 35.011 437 174 8 4 374 16 408 8.12e-63 207
MS.gene77317.t1 MTR_7g066280 36.750 400 136 12 83 374 1 391 2.12e-59 198
MS.gene77317.t1 MTR_7g063890 35.789 475 199 11 3 373 26 498 6.74e-59 199
MS.gene77317.t1 MTR_3g007740 35.730 459 187 13 1 373 6 442 2.62e-58 196
MS.gene77317.t1 MTR_7g063670 34.152 448 204 10 5 373 16 451 1.00e-55 189
MS.gene77317.t1 MTR_3g065200 34.524 420 198 13 4 360 3 408 2.13e-53 183
MS.gene77317.t1 MTR_4g019310 33.061 490 201 18 4 373 8 490 2.78e-52 181
MS.gene77317.t1 MTR_7g066680 37.975 316 96 6 151 369 22 334 1.66e-46 162
MS.gene77317.t1 MTR_7g066680 28.205 195 124 8 2 186 84 272 6.57e-11 63.5
MS.gene77317.t1 MTR_7g066390 51.634 153 43 2 223 374 1 123 5.23e-41 142
MS.gene77317.t1 MTR_4g017610 28.571 476 211 16 7 369 16 475 2.27e-37 140
MS.gene77317.t1 MTR_4g019340 28.243 478 215 15 1 361 35 501 1.92e-36 139
MS.gene77317.t1 MTR_4g017830 28.169 497 221 18 5 373 13 501 4.02e-35 135
MS.gene77317.t1 MTR_4g017440 26.946 501 227 18 2 373 12 502 1.11e-34 134
MS.gene77317.t1 MTR_7g062270 40.659 182 97 5 5 178 11 189 1.77e-34 131
MS.gene77317.t1 MTR_4g017410 27.122 483 236 18 2 373 7 484 4.93e-32 126
MS.gene77317.t1 MTR_2g067310 44.828 174 58 5 4 173 43 182 6.90e-32 120
MS.gene77317.t1 MTR_7g063720 39.181 171 86 4 218 373 59 226 1.28e-26 106
MS.gene77317.t1 MTR_7g063720 31.771 192 113 7 2 192 21 195 9.33e-17 79.3
MS.gene77317.t1 MTR_4g017470 26.113 494 204 16 5 373 13 470 1.92e-23 102
MS.gene77317.t1 MTR_4g017470 30.144 209 105 10 2 178 232 431 6.17e-15 76.3
MS.gene77317.t1 MTR_4g017550 27.234 470 197 22 31 371 18 471 5.17e-22 97.4
MS.gene77317.t1 MTR_8g445860 26.050 238 119 6 2 192 11 238 8.49e-17 79.3
MS.gene77317.t1 MTR_1g115440 29.661 236 110 7 4 191 11 238 8.71e-17 79.3
MS.gene77317.t1 MTR_7g100420 30.000 260 121 6 170 369 135 393 2.66e-16 80.1
MS.gene77317.t1 MTR_7g100420 73.810 42 11 0 5 46 40 81 2.43e-12 68.2
MS.gene77317.t1 MTR_0150s0010 29.185 233 115 5 4 191 10 237 9.33e-16 76.3
MS.gene77317.t1 MTR_4g019240 39.815 108 55 4 5 104 14 119 3.61e-15 73.6
MS.gene77317.t1 MTR_1g115450 36.782 87 50 1 2 88 5 86 2.26e-14 70.1
MS.gene77317.t1 MTR_7g063760 50.769 65 31 1 310 373 3 67 1.35e-13 65.9
MS.gene77317.t1 MTR_1g115470 39.773 88 48 1 4 91 6 88 7.98e-13 69.7
MS.gene77317.t1 MTR_7g063850 31.183 186 93 7 218 373 102 282 1.17e-12 68.2
MS.gene77317.t1 MTR_0150s0030 38.824 85 46 2 4 87 8 87 2.07e-12 66.2
MS.gene77317.t1 MTR_1g115455 38.824 85 47 1 4 88 9 88 2.86e-12 66.2
MS.gene77317.t1 MTR_7g063690 66.667 48 16 0 5 52 13 60 5.98e-12 65.5
MS.gene77317.t1 MTR_8g445920 37.349 83 47 1 4 86 10 87 1.20e-11 61.6
MS.gene77317.t1 MTR_8g044890 37.349 83 47 1 4 86 10 87 1.20e-11 61.6
MS.gene77317.t1 MTR_8g445910 40.000 85 45 2 4 87 8 87 1.25e-11 65.1
MS.gene77317.t1 MTR_8g044880 40.000 85 45 2 4 87 8 87 1.51e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77317.t1 AT5G01120 28.750 480 223 16 5 369 10 485 1.17e-36 139
MS.gene77317.t1 AT3G09110 42.442 172 93 3 4 169 9 180 2.03e-34 130
MS.gene77317.t1 AT3G09120 39.459 185 90 4 2 169 4 183 2.58e-32 124
MS.gene77317.t1 AT5G01130 28.571 455 221 17 4 373 9 444 3.33e-32 126
MS.gene77317.t1 AT5G01150 39.474 190 90 5 4 175 9 191 4.41e-29 118
MS.gene77317.t1 AT5G43240 35.628 247 109 11 5 202 10 255 2.16e-27 113
MS.gene77317.t1 AT5G43240 35.628 247 109 11 5 202 10 255 2.16e-27 113
MS.gene77317.t1 AT5G43240 35.628 247 109 11 5 202 10 255 2.16e-27 113
MS.gene77317.t1 AT3G09140 38.806 134 79 2 2 132 7 140 2.30e-25 107
MS.gene77317.t1 AT3G09140 38.806 134 79 2 2 132 7 140 2.75e-25 107
MS.gene77317.t1 AT5G01140 26.124 467 224 15 4 373 9 451 3.83e-23 100
MS.gene77317.t1 AT5G37320 35.821 134 80 3 5 132 10 143 2.57e-20 92.8

Find 77 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCCTCCATAAGGGTATT+TGG 0.190356 7.2:+35974620 None:intergenic
GTTTCTTAACATTGCCTTTA+GGG 0.209003 7.2:-35975702 MS.gene77317:CDS
CAAGACCTCGCCACTGTCTT+TGG 0.239084 7.2:+35974656 None:intergenic
GAAGAAATTGACGTTAATAT+TGG 0.269575 7.2:-35974486 MS.gene77317:CDS
AATATCGAAGCAATGAAATT+TGG 0.294760 7.2:-35975649 MS.gene77317:CDS
AGTTTCTTAACATTGCCTTT+AGG 0.296582 7.2:-35975703 MS.gene77317:CDS
GTTGATCCCAAATACCCTTA+TGG 0.298252 7.2:-35974627 MS.gene77317:CDS
AACGGCCTCAAACACTTCTT+AGG 0.336198 7.2:-35974316 MS.gene77317:CDS
AAATCCATTGTCAAAGGAAC+TGG 0.349933 7.2:+35975375 None:intergenic
CACAGGACAGACAAACATTA+TGG 0.379404 7.2:-35974595 MS.gene77317:CDS
TATCCTCCATAAGGGTATTT+GGG 0.381765 7.2:+35974621 None:intergenic
ATTTCTTCAATGTCATTTAG+AGG 0.419157 7.2:+35974501 None:intergenic
GAAGAGGGTAAGATTGGTAT+TGG 0.419917 7.2:-35975020 MS.gene77317:CDS
CCATCTGAAGAGGGTAAGAT+TGG 0.438944 7.2:-35975026 MS.gene77317:CDS
TGGTTCCTTACTTCATATGT+AGG 0.448885 7.2:+35974711 None:intergenic
TCTGACTGCAAACATTTCTC+AGG 0.454450 7.2:+35974771 None:intergenic
CCTGTGACATATCCTCCATA+AGG 0.455396 7.2:+35974612 None:intergenic
ACGCTCCACAAAGGCATTTG+TGG 0.458205 7.2:+35975422 None:intergenic
CAAAGCGTGCAAGATCTTGA+TGG 0.464561 7.2:-35975607 MS.gene77317:CDS
AGAGTTCTGTATGCTGAGGC+TGG 0.466258 7.2:-35975751 MS.gene77317:CDS
CTACCTTCCATGGAGTTCCT+TGG 0.467829 7.2:+35975541 None:intergenic
CAATGGATTTGTTAAAGCTA+CGG 0.490165 7.2:-35975362 MS.gene77317:CDS
GGTAAGATTGGTATTGGAAA+GGG 0.492219 7.2:-35975014 MS.gene77317:CDS
TGTCCCAGTTCCTTTGACAA+TGG 0.493341 7.2:-35975379 MS.gene77317:CDS
AATATTGATGCAGCTTAAAG+AGG 0.495387 7.2:+35974821 None:intergenic
AGGAACCACAAATGCCTTTG+TGG 0.496701 7.2:-35975427 MS.gene77317:CDS
CTGTGACATATCCTCCATAA+GGG 0.498581 7.2:+35974613 None:intergenic
AGTTACATTGAAAGTTATTG+TGG 0.500095 7.2:-35975788 MS.gene77317:CDS
CCTCCTACAACTACCTTCCA+TGG 0.511757 7.2:+35975531 None:intergenic
AAGCCCTCATCTGCATATGT+TGG 0.515996 7.2:+35975050 None:intergenic
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.2:-35974849 MS.gene77317:CDS
TTTCTTCAATGTCATTTAGA+GGG 0.521741 7.2:+35974502 None:intergenic
ACTTCTTAGGCTTTGACTAA+CGG 0.524768 7.2:-35974303 None:intergenic
ACATTCATTCTTTCTAGATG+TGG 0.526820 7.2:+35974525 None:intergenic
ACTCCATGGAAGGTAGTTGT+AGG 0.528561 7.2:-35975534 MS.gene77317:CDS
CGTTAATATTGGAGTGAAGG+AGG 0.531560 7.2:-35974475 MS.gene77317:intron
TGACGTTAATATTGGAGTGA+AGG 0.533611 7.2:-35974478 MS.gene77317:CDS
ATTGTCAAAGGAACTGGGAC+AGG 0.536280 7.2:+35975381 None:intergenic
ACTGGAGGTGTAGGAAGTGT+TGG 0.538131 7.2:-35975459 MS.gene77317:CDS
AGTCTTGCAATAGTCCCTAA+AGG 0.541322 7.2:+35975688 None:intergenic
TTTAACAAATCCATTGTCAA+AGG 0.542622 7.2:+35975369 None:intergenic
CAGAGGAGTCTTCGAGAGCA+AGG 0.548998 7.2:+35975097 None:intergenic
TCAACATCTGCTTTGACTAA+CGG 0.558327 7.2:-35974334 MS.gene77317:CDS
GGGTAAGATTGGTATTGGAA+AGG 0.563253 7.2:-35975015 MS.gene77317:CDS
GAGTTCTGTATGCTGAGGCT+GGG 0.570437 7.2:-35975750 MS.gene77317:CDS
AAAGCGTGCAAGATCTTGAT+GGG 0.571030 7.2:-35975606 MS.gene77317:CDS
CAAAGCCTAAGAAGTGTTTG+AGG 0.571566 7.2:+35974311 None:intergenic
TCTCTGCGGACTGGAGGTGT+AGG 0.574524 7.2:-35975468 MS.gene77317:CDS
CATTATGGTGACAGACGAGC+TGG 0.575168 7.2:-35974580 MS.gene77317:CDS
CCAATCTTACCCTCTTCAGA+TGG 0.593770 7.2:+35975026 None:intergenic
GAAACCAACATATGCAGATG+AGG 0.595214 7.2:-35975054 MS.gene77317:CDS
ACTTTATCTCTGCGGACTGG+AGG 0.595323 7.2:-35975474 MS.gene77317:CDS
TGGGAAATATCTATGCTCAC+AGG 0.596001 7.2:-35975587 MS.gene77317:CDS
TGAGGGCTTACCATCTGAAG+AGG 0.596168 7.2:-35975036 MS.gene77317:CDS
AGTACTTTATCTCTGCGGAC+TGG 0.599183 7.2:-35975477 MS.gene77317:CDS
CCATGGAAGGTAGTTGTAGG+AGG 0.601693 7.2:-35975531 MS.gene77317:CDS
ATCTGCTTACCCTCTTCAGA+TGG 0.603380 7.2:+35974987 None:intergenic
ACTCAAGCCAAGGAACTCCA+TGG 0.606428 7.2:-35975548 MS.gene77317:CDS
CCTTATGGAGGATATGTCAC+AGG 0.608145 7.2:-35974612 MS.gene77317:CDS
TTTAAGATAAAGTCTGTCAG+AGG 0.610371 7.2:+35975080 None:intergenic
AAGAAATGCTACTCAAGCCA+AGG 0.611550 7.2:-35975558 MS.gene77317:CDS
AAAGGGCTTACCATCTGAAG+AGG 0.612181 7.2:-35974997 MS.gene77317:CDS
GCAGAGATAAAGTACTGTAT+CGG 0.612291 7.2:+35975484 None:intergenic
AGGGACTATTGCAAGACTAG+TGG 0.623463 7.2:-35975683 MS.gene77317:CDS
AATCCATTGTCAAAGGAACT+GGG 0.631964 7.2:+35975376 None:intergenic
AAACCAACATATGCAGATGA+GGG 0.635875 7.2:-35975053 MS.gene77317:CDS
ACACTATCAAACGATGACAC+TGG 0.637533 7.2:+35974549 None:intergenic
AAGCCAAGGAACTCCATGGA+AGG 0.641089 7.2:-35975544 MS.gene77317:CDS
GATCCCAAATACCCTTATGG+AGG 0.653453 7.2:-35974624 MS.gene77317:CDS
GAACAGAGTTCTGTATGCTG+AGG 0.655165 7.2:-35975755 MS.gene77317:CDS
AAGGGCTTACCATCTGAAGA+GGG 0.666261 7.2:-35974996 MS.gene77317:intron
GAGGGCTTACCATCTGAAGA+GGG 0.666261 7.2:-35975035 MS.gene77317:CDS
TACTTCCAAAGACAGTGGCG+AGG 0.673539 7.2:-35974661 MS.gene77317:CDS
GTGTTTACTTCCAAAGACAG+TGG 0.675604 7.2:-35974666 MS.gene77317:CDS
GTTAGTCAAAGCAGATGTTG+AGG 0.693625 7.2:+35974336 None:intergenic
TGTAACAAGACGCTCCACAA+AGG 0.705348 7.2:+35975413 None:intergenic
GATACAGTACTTTATCTCTG+CGG 0.790044 7.2:-35975482 MS.gene77317:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATGTTTATATGTGT+AGG - chr7.2:35974964-35974983 MS.gene77317:intron 15.0%
!!! ATAATTTGTATATATGGTGA+TGG - chr7.2:35975713-35975732 MS.gene77317:CDS 20.0%
!!! GATTGCATAATTTGTATATA+TGG - chr7.2:35975707-35975726 MS.gene77317:CDS 20.0%
! AATATCGAAGCAATGAAATT+TGG - chr7.2:35974456-35974475 MS.gene77317:intron 25.0%
! AATGATCTAGTAAAAGGTTT+CGG - chr7.2:35974804-35974823 MS.gene77317:CDS 25.0%
! AGTTACATTGAAAGTTATTG+TGG - chr7.2:35974317-35974336 MS.gene77317:CDS 25.0%
! GAAGAAATTGACGTTAATAT+TGG - chr7.2:35975619-35975638 MS.gene77317:CDS 25.0%
! TCATATGTAGGAAAAATTTG+AGG + chr7.2:35975385-35975404 None:intergenic 25.0%
! TTTAACAAATCCATTGTCAA+AGG + chr7.2:35974739-35974758 None:intergenic 25.0%
!! AAACCTTTTACTAGATCATT+AGG + chr7.2:35974804-35974823 None:intergenic 25.0%
!! ATTTCTTCAATGTCATTTAG+AGG + chr7.2:35975607-35975626 None:intergenic 25.0%
!! TTTCTTCAATGTCATTTAGA+GGG + chr7.2:35975606-35975625 None:intergenic 25.0%
!! TTTTTCCTACATATGAAGTA+AGG - chr7.2:35975389-35975408 MS.gene77317:CDS 25.0%
AATATTGATGCAGCTTAAAG+AGG + chr7.2:35975287-35975306 None:intergenic 30.0%
ACATTCATTCTTTCTAGATG+TGG + chr7.2:35975583-35975602 None:intergenic 30.0%
AGTTTCTTAACATTGCCTTT+AGG - chr7.2:35974402-35974421 MS.gene77317:intron 30.0%
ATGCCTAATGATCTAGTAAA+AGG - chr7.2:35974798-35974817 MS.gene77317:CDS 30.0%
GCAGATAAAAGTAAAACTAC+TGG - chr7.2:35975141-35975160 MS.gene77317:intron 30.0%
GTTTCTTAACATTGCCTTTA+GGG - chr7.2:35974403-35974422 MS.gene77317:intron 30.0%
TCAACTAGAAACATTCTGTT+TGG - chr7.2:35975172-35975191 MS.gene77317:intron 30.0%
! TTTAAGATAAAGTCTGTCAG+AGG + chr7.2:35975028-35975047 None:intergenic 30.0%
!! CAATGGATTTGTTAAAGCTA+CGG - chr7.2:35974743-35974762 MS.gene77317:CDS 30.0%
!!! CTGTTTTGATTGGTAAAATC+TGG + chr7.2:35975417-35975436 None:intergenic 30.0%
AAACCAACATATGCAGATGA+GGG - chr7.2:35975052-35975071 MS.gene77317:CDS 35.0%
AAATCCATTGTCAAAGGAAC+TGG + chr7.2:35974733-35974752 None:intergenic 35.0%
AACAATACCTATCAGCAAGA+AGG - chr7.2:35974875-35974894 MS.gene77317:intron 35.0%
AATCCATTGTCAAAGGAACT+GGG + chr7.2:35974732-35974751 None:intergenic 35.0%
GATACAGTACTTTATCTCTG+CGG - chr7.2:35974623-35974642 MS.gene77317:CDS 35.0%
TCAACATCTGCTTTGACTAA+CGG - chr7.2:35975771-35975790 MS.gene77317:CDS 35.0%
TGACGTTAATATTGGAGTGA+AGG - chr7.2:35975627-35975646 MS.gene77317:CDS 35.0%
TGGTTCCTTACTTCATATGT+AGG + chr7.2:35975397-35975416 None:intergenic 35.0%
! GGTAAGATTGGTATTGGAAA+GGG - chr7.2:35975091-35975110 MS.gene77317:CDS 35.0%
! TTTTTCTCTCGATATCTGCA+GGG + chr7.2:35974857-35974876 None:intergenic 35.0%
!! AGTTTTCTCACTTTTCCTCT+AGG - chr7.2:35975232-35975251 MS.gene77317:intron 35.0%
!! ATATCCTCCATAAGGGTATT+TGG + chr7.2:35975488-35975507 None:intergenic 35.0%
!! GCAGAGATAAAGTACTGTAT+CGG + chr7.2:35974624-35974643 None:intergenic 35.0%
!! TATCCTCCATAAGGGTATTT+GGG + chr7.2:35975487-35975506 None:intergenic 35.0%
!!! GGAAGTGTTGGAGTATTTTT+AGG - chr7.2:35974658-35974677 MS.gene77317:CDS 35.0%
!!! GTAAACACAGCTGTTTTGAT+TGG + chr7.2:35975427-35975446 None:intergenic 35.0%
AAAGCGTGCAAGATCTTGAT+GGG - chr7.2:35974499-35974518 MS.gene77317:CDS 40.0%
AAGAAATGCTACTCAAGCCA+AGG - chr7.2:35974547-35974566 MS.gene77317:CDS 40.0%
AATACCTATCAGCAAGAAGG+AGG - chr7.2:35974878-35974897 MS.gene77317:intron 40.0%
ACACTATCAAACGATGACAC+TGG + chr7.2:35975559-35975578 None:intergenic 40.0%
AGTCTTGCAATAGTCCCTAA+AGG + chr7.2:35974420-35974439 None:intergenic 40.0%
ATTGGAGTGAAGGAGGTAAA+GGG - chr7.2:35975637-35975656 MS.gene77317:CDS 40.0%
CACAGGACAGACAAACATTA+TGG - chr7.2:35975510-35975529 MS.gene77317:CDS 40.0%
CGTTAATATTGGAGTGAAGG+AGG - chr7.2:35975630-35975649 MS.gene77317:CDS 40.0%
CTGTGACATATCCTCCATAA+GGG + chr7.2:35975495-35975514 None:intergenic 40.0%
GAAACCAACATATGCAGATG+AGG - chr7.2:35975051-35975070 MS.gene77317:CDS 40.0%
GAAGAGGGTAAGATTGGTAT+TGG - chr7.2:35975085-35975104 MS.gene77317:CDS 40.0%
GTGTTTACTTCCAAAGACAG+TGG - chr7.2:35975439-35975458 MS.gene77317:CDS 40.0%
GTTAGTCAAAGCAGATGTTG+AGG + chr7.2:35975772-35975791 None:intergenic 40.0%
GTTGATCCCAAATACCCTTA+TGG - chr7.2:35975478-35975497 MS.gene77317:CDS 40.0%
TATTGGAGTGAAGGAGGTAA+AGG - chr7.2:35975636-35975655 MS.gene77317:CDS 40.0%
TCTGACTGCAAACATTTCTC+AGG + chr7.2:35975337-35975356 None:intergenic 40.0%
TCTGTTTGGTATAGCAGAGA+AGG - chr7.2:35975186-35975205 MS.gene77317:intron 40.0%
TGGGAAATATCTATGCTCAC+AGG - chr7.2:35974518-35974537 MS.gene77317:CDS 40.0%
TTCGGTTTACTGCAGATGAA+CGG - chr7.2:35974822-35974841 MS.gene77317:CDS 40.0%
! AGCAGAGAAGGAAGATTTTG+CGG - chr7.2:35975198-35975217 MS.gene77317:intron 40.0%
! GGGTAAGATTGGTATTGGAA+AGG - chr7.2:35975090-35975109 MS.gene77317:CDS 40.0%
! GTTTTTCTCTCGATATCTGC+AGG + chr7.2:35974858-35974877 None:intergenic 40.0%
!! CAAAGCCTAAGAAGTGTTTG+AGG + chr7.2:35975797-35975816 None:intergenic 40.0%
!! GTATATATGGTGATGGTGCA+GGG - chr7.2:35975720-35975739 MS.gene77317:CDS 40.0%
!! TGTATATATGGTGATGGTGC+AGG - chr7.2:35975719-35975738 MS.gene77317:CDS 40.0%
!! TTTCTCACTTTTCCTCTAGG+AGG - chr7.2:35975235-35975254 MS.gene77317:intron 40.0%
AAAGGGCTTACCATCTGAAG+AGG - chr7.2:35975108-35975127 MS.gene77317:CDS 45.0%
AACGGCCTCAAACACTTCTT+AGG - chr7.2:35975789-35975808 MS.gene77317:CDS 45.0%
AAGCCCTCATCTGCATATGT+TGG + chr7.2:35975058-35975077 None:intergenic 45.0%
AAGGGCTTACCATCTGAAGA+GGG - chr7.2:35975109-35975128 MS.gene77317:CDS 45.0%
ACTCCATGGAAGGTAGTTGT+AGG - chr7.2:35974571-35974590 MS.gene77317:CDS 45.0%
AGGAACCACAAATGCCTTTG+TGG - chr7.2:35974678-35974697 MS.gene77317:CDS 45.0%
AGGGACTATTGCAAGACTAG+TGG - chr7.2:35974422-35974441 MS.gene77317:intron 45.0%
AGTACTTTATCTCTGCGGAC+TGG - chr7.2:35974628-35974647 MS.gene77317:CDS 45.0%
ATCTGCTTACCCTCTTCAGA+TGG + chr7.2:35975121-35975140 None:intergenic 45.0%
ATTGTCAAAGGAACTGGGAC+AGG + chr7.2:35974727-35974746 None:intergenic 45.0%
ATTTGCAACACTCCTCCTAG+AGG + chr7.2:35975250-35975269 None:intergenic 45.0%
CAAAGCGTGCAAGATCTTGA+TGG - chr7.2:35974498-35974517 MS.gene77317:CDS 45.0%
CCAATCTTACCCTCTTCAGA+TGG + chr7.2:35975082-35975101 None:intergenic 45.0%
CCATCTGAAGAGGGTAAGAT+TGG - chr7.2:35975079-35975098 MS.gene77317:CDS 45.0%
CCTGTGACATATCCTCCATA+AGG + chr7.2:35975496-35975515 None:intergenic 45.0%
CCTTATGGAGGATATGTCAC+AGG - chr7.2:35975493-35975512 MS.gene77317:CDS 45.0%
GAACAGAGTTCTGTATGCTG+AGG - chr7.2:35974350-35974369 MS.gene77317:CDS 45.0%
GATCCCAAATACCCTTATGG+AGG - chr7.2:35975481-35975500 MS.gene77317:CDS 45.0%
TGTAACAAGACGCTCCACAA+AGG + chr7.2:35974695-35974714 None:intergenic 45.0%
TGTCCCAGTTCCTTTGACAA+TGG - chr7.2:35974726-35974745 MS.gene77317:CDS 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG - chr7.2:35975256-35975275 MS.gene77317:intron 45.0%
!!! AGAAGGAGGCATGCTTTTTC+TGG - chr7.2:35974892-35974911 MS.gene77317:intron 45.0%
AAGCCAAGGAACTCCATGGA+AGG - chr7.2:35974561-35974580 MS.gene77317:CDS 50.0%
ACTCAAGCCAAGGAACTCCA+TGG - chr7.2:35974557-35974576 MS.gene77317:CDS 50.0%
AGAGTTCTGTATGCTGAGGC+TGG - chr7.2:35974354-35974373 MS.gene77317:CDS 50.0%
CATGCCTCCTTCTTGCTGAT+AGG + chr7.2:35974885-35974904 None:intergenic 50.0%
CATTATGGTGACAGACGAGC+TGG - chr7.2:35975525-35975544 MS.gene77317:CDS 50.0%
CCATGGAAGGTAGTTGTAGG+AGG - chr7.2:35974574-35974593 MS.gene77317:CDS 50.0%
CCTCCTACAACTACCTTCCA+TGG + chr7.2:35974577-35974596 None:intergenic 50.0%
CTACCTTCCATGGAGTTCCT+TGG + chr7.2:35974567-35974586 None:intergenic 50.0%
GAGGGCTTACCATCTGAAGA+GGG - chr7.2:35975070-35975089 MS.gene77317:CDS 50.0%
GAGTTCTGTATGCTGAGGCT+GGG - chr7.2:35974355-35974374 MS.gene77317:CDS 50.0%
TACTTCCAAAGACAGTGGCG+AGG - chr7.2:35975444-35975463 MS.gene77317:CDS 50.0%
TGAGGGCTTACCATCTGAAG+AGG - chr7.2:35975069-35975088 MS.gene77317:CDS 50.0%
! ACTGGAGGTGTAGGAAGTGT+TGG - chr7.2:35974646-35974665 MS.gene77317:CDS 50.0%
!! ACGCTCCACAAAGGCATTTG+TGG + chr7.2:35974686-35974705 None:intergenic 50.0%
!! ACTTTATCTCTGCGGACTGG+AGG - chr7.2:35974631-35974650 MS.gene77317:CDS 50.0%
CAAGACCTCGCCACTGTCTT+TGG + chr7.2:35975452-35975471 None:intergenic 55.0%
CAGAGGAGTCTTCGAGAGCA+AGG + chr7.2:35975011-35975030 None:intergenic 55.0%
!! TCTCTGCGGACTGGAGGTGT+AGG - chr7.2:35974637-35974656 MS.gene77317:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 35974306 35975821 35974306 ID=MS.gene77317
chr7.2 mRNA 35974306 35975821 35974306 ID=MS.gene77317.t1;Parent=MS.gene77317
chr7.2 exon 35975315 35975821 35975315 ID=MS.gene77317.t1.exon1;Parent=MS.gene77317.t1
chr7.2 CDS 35975315 35975821 35975315 ID=cds.MS.gene77317.t1;Parent=MS.gene77317.t1
chr7.2 exon 35974997 35975141 35974997 ID=MS.gene77317.t1.exon2;Parent=MS.gene77317.t1
chr7.2 CDS 35974997 35975141 35974997 ID=cds.MS.gene77317.t1;Parent=MS.gene77317.t1
chr7.2 exon 35974476 35974873 35974476 ID=MS.gene77317.t1.exon3;Parent=MS.gene77317.t1
chr7.2 CDS 35974476 35974873 35974476 ID=cds.MS.gene77317.t1;Parent=MS.gene77317.t1
chr7.2 exon 35974306 35974386 35974306 ID=MS.gene77317.t1.exon4;Parent=MS.gene77317.t1
chr7.2 CDS 35974306 35974386 35974306 ID=cds.MS.gene77317.t1;Parent=MS.gene77317.t1
Gene Sequence

>MS.gene77317

ATGGCTGAAAAAGTTACATTGAAAGTTATTGTGGACAAAGAAAAGAACAGAGTTCTGTATGCTGAGGCTGGGAACGATTTTGTTGATGCTCTTTTCAGTTTCTTAACATTGCCTTTAGGGACTATTGCAAGACTAGTGGCTGAAGAATCAAATATCGAAGCAATGAAATTTGGCAGCATTAGCTCGCTTTATCAAAGCGTGCAAGATCTTGATGGGAAATATCTATGCTCACAGGAATGCAAAGAAATGCTACTCAAGCCAAGGAACTCCATGGAAGGTAGTTGTAGGAGGCTCAAACTGAACATCGATGACACACCGATACAGTACTTTATCTCTGCGGACTGGAGGTGTAGGAAGTGTTGGAGTATTTTTAGGAACCACAAATGCCTTTGTGGAGCGTCTTGTTACACAGAAGTTACCTGTCCCAGTTCCTTTGACAATGGATTTGTTAAAGCTACGGCTAGTTTTATAATTCATGACGATCTTTCTGTAATGCCTAATGATCTAGTAAAAGGTTTCGGTTTACTGCAGATGAACGGAATCAATGACCCTGCAGATATCGAGAGAAAAACAATACCTATCAGCAAGAAGGAGGCATGCTTTTTCTGGCTTTTCTCAATTTCTATATTTTTATCACTGACGTTGATTTTTTAAATGAATATTTATGTTTATATGTGTAGGTAGTTGATCTTCTCAAGTTGTCCTTGCTCTCGAAGACTCCTCTGACAGACTTTATCTTAAAGAAGAAACCAACATATGCAGATGAGGGCTTACCATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGGTAAGCAGATGCAGATAAAAGTAAAACTACTGGTTAGAAAATCAACTAGAAACATTCTGTTTGGTATAGCAGAGAAGGAAGATTTTGCGGACTTTCTTTTCAGTTTTCTCACTTTTCCTCTAGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCCTCTTTAAGCTGCATCAATATTTTATATAAAAGCATGACTGAGTTGAGTCCTGAGAAATGTTTGCAGTCAGATGAACTTAAAAACAAACTAAGTAAGCCTCAAATTTTTCCTACATATGAAGTAAGGAACCAGATTTTACCAATCAAAACAGCTGTGTTTACTTCCAAAGACAGTGGCGAGGTCTTGAAATTTGTTGATCCCAAATACCCTTATGGAGGATATGTCACAGGACAGACAAACATTATGGTGACAGACGAGCTGGTTGTGACTCCAGTGTCATCGTTTGATAGTGTTCCACATCTAGAAAGAATGAATGTCCCTCTAAATGACATTGAAGAAATTGACGTTAATATTGGAGTGAAGGAGGTAAAGGGATTGTGTGAGACATTATTTAGCATATATTTTAATTTTTACATTTCTCGATTGCATAATTTGTATATATGGTGATGGTGCAGGGTCTCAACATACTAAAAGCTTCATTGACCTCAACATCTGCTTTGACTAACGGCCTCAAACACTTCTTAGGCTTTGACTAA
Protein sequence

>MS.gene77317.t1

MAEKVTLKVIVDKEKNRVLYAEAGNDFVDALFSFLTLPLGTIARLVAEESNIEAMKFGSISSLYQSVQDLDGKYLCSQECKEMLLKPRNSMEGSCRRLKLNIDDTPIQYFISADWRCRKCWSIFRNHKCLCGASCYTEVTCPSSFDNGFVKATASFIIHDDLSVMPNDLVVDLLKLSLLSKTPLTDFILKKKPTYADEGLPSEEGKIGIGKGLPSEEGGVLQMLEGFSSLSCINILYKSMTELSPEKCLQSDELKNKLSKPQIFPTYEVRNQILPIKTAVFTSKDSGEVLKFVDPKYPYGGYVTGQTNIMVTDELVVTPVSSFDSVPHLERMNVPLNDIEEIDVNIGVKEGLNILKASLTSTSALTNGLKHFLGFD