AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058483

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058483.t1 MTR_1g014060 69.291 381 51 5 23 369 9 357 1.20e-179 505
MS.gene058483.t1 MTR_7g066260 45.958 433 169 7 2 369 3 435 1.39e-110 333
MS.gene058483.t1 MTR_7g066260 25.926 216 128 6 17 231 272 456 6.52e-13 70.5
MS.gene058483.t1 MTR_7g066570 63.077 260 88 2 1 259 1 253 3.54e-106 324
MS.gene058483.t1 MTR_7g066570 55.140 107 35 3 263 369 360 453 3.11e-20 93.2
MS.gene058483.t1 MTR_7g066570 27.232 224 151 5 14 231 257 474 7.14e-15 76.6
MS.gene058483.t1 MTR_7g012680 62.934 259 76 1 1 259 1 239 2.83e-105 318
MS.gene058483.t1 MTR_7g012680 42.056 107 28 2 263 369 346 418 1.15e-12 69.7
MS.gene058483.t1 MTR_7g066350 45.176 425 161 11 10 369 5 422 4.22e-103 313
MS.gene058483.t1 MTR_7g058710 64.407 236 67 3 6 236 4 227 1.33e-98 302
MS.gene058483.t1 MTR_7g058710 25.620 242 162 8 14 247 253 484 8.51e-16 79.3
MS.gene058483.t1 MTR_7g066340 57.692 260 105 3 5 260 3 261 8.32e-92 285
MS.gene058483.t1 MTR_7g066290 42.958 426 166 11 1 369 1 406 2.33e-89 277
MS.gene058483.t1 MTR_7g058700 43.979 382 158 10 26 369 531 894 6.11e-84 275
MS.gene058483.t1 MTR_1g041315 52.652 264 111 4 1 251 1 263 4.72e-82 260
MS.gene058483.t1 MTR_2g029400 51.341 261 76 3 1 259 1 212 1.08e-77 246
MS.gene058483.t1 MTR_7g066360 56.917 253 100 5 1 247 1 250 1.35e-74 240
MS.gene058483.t1 MTR_7g066410 46.591 264 115 6 15 254 11 272 2.03e-70 230
MS.gene058483.t1 MTR_7g066410 28.689 244 151 7 2 231 272 506 1.64e-19 90.9
MS.gene058483.t1 MTR_7g066430 47.436 234 119 4 14 243 4 237 1.34e-66 220
MS.gene058483.t1 MTR_7g066430 30.213 235 141 8 11 231 254 479 4.48e-20 92.4
MS.gene058483.t1 MTR_7g066580 51.055 237 83 6 20 253 1 207 2.42e-66 218
MS.gene058483.t1 MTR_7g066580 25.322 233 155 6 14 233 215 441 1.22e-13 72.4
MS.gene058483.t1 MTR_7g066580 54.839 62 28 0 308 369 357 418 4.76e-13 70.9
MS.gene058483.t1 MTR_7g066310 39.896 386 172 13 11 369 4 356 6.88e-66 215
MS.gene058483.t1 MTR_7g066400 49.810 263 91 6 1 255 1 230 8.81e-66 216
MS.gene058483.t1 MTR_7g066400 25.792 221 134 8 13 231 239 431 2.32e-11 65.5
MS.gene058483.t1 MTR_7g066490 37.940 398 188 10 14 377 16 388 2.96e-64 211
MS.gene058483.t1 MTR_7g063880 50.207 241 109 6 1 238 1 233 1.02e-61 206
MS.gene058483.t1 MTR_7g063880 25.311 241 127 7 14 231 246 456 3.08e-13 71.2
MS.gene058483.t1 MTR_7g063890 46.725 229 118 3 13 240 26 251 3.66e-59 200
MS.gene058483.t1 MTR_7g063660 46.256 227 113 5 13 236 8 228 1.59e-57 195
MS.gene058483.t1 MTR_7g063660 26.407 231 140 7 14 230 250 464 5.84e-20 92.0
MS.gene058483.t1 MTR_7g063900 44.978 229 121 4 14 240 10 235 2.81e-55 190
MS.gene058483.t1 MTR_7g063900 24.887 221 133 6 14 214 252 459 7.58e-14 73.6
MS.gene058483.t1 MTR_7g066480 46.154 234 113 4 13 241 15 240 7.79e-55 187
MS.gene058483.t1 MTR_7g062300 44.398 241 123 7 1 236 1 235 2.28e-53 184
MS.gene058483.t1 MTR_7g062300 29.545 220 145 6 14 231 256 467 2.23e-17 84.0
MS.gene058483.t1 MTR_7g063840 44.958 238 120 7 1 236 1 229 2.22e-51 179
MS.gene058483.t1 MTR_7g063840 24.779 226 148 5 14 231 250 461 4.65e-13 70.9
MS.gene058483.t1 MTR_7g063830 42.609 230 125 6 8 234 4 229 4.90e-51 177
MS.gene058483.t1 MTR_7g062280 42.276 246 123 6 6 236 4 245 5.82e-51 178
MS.gene058483.t1 MTR_7g062280 30.804 224 139 7 14 231 266 479 1.50e-19 90.9
MS.gene058483.t1 MTR_3g007740 42.797 236 111 6 13 243 8 224 5.64e-46 164
MS.gene058483.t1 MTR_7g063820 43.028 251 131 7 8 254 3 245 8.70e-46 164
MS.gene058483.t1 MTR_7g063820 26.457 223 149 8 17 231 257 472 8.41e-12 67.0
MS.gene058483.t1 MTR_3g065200 41.706 211 107 4 12 220 1 197 5.32e-43 156
MS.gene058483.t1 MTR_7g063920 39.662 237 101 4 1 236 1 196 7.62e-43 155
MS.gene058483.t1 MTR_7g063920 27.556 225 139 7 14 231 217 424 8.12e-17 82.4
MS.gene058483.t1 MTR_4g019310 37.255 255 136 7 1 239 1 247 7.74e-42 154
MS.gene058483.t1 MTR_4g019310 26.339 224 151 6 10 226 262 478 1.43e-13 72.4
MS.gene058483.t1 MTR_4g017610 36.996 273 135 9 1 246 1 263 2.88e-40 149
MS.gene058483.t1 MTR_7g063670 41.880 234 108 7 10 234 13 227 6.18e-40 148
MS.gene058483.t1 MTR_7g063670 26.818 220 131 11 15 231 253 445 1.36e-12 69.3
MS.gene058483.t1 MTR_4g017410 37.903 248 121 9 8 231 3 241 2.62e-37 142
MS.gene058483.t1 MTR_7g062270 40.741 189 101 6 1 186 1 181 4.69e-37 139
MS.gene058483.t1 MTR_4g017830 37.302 252 129 10 1 235 1 240 1.01e-34 135
MS.gene058483.t1 MTR_4g019340 35.081 248 124 7 15 235 39 276 2.59e-34 133
MS.gene058483.t1 MTR_4g017440 34.875 281 144 11 1 261 1 262 3.56e-34 133
MS.gene058483.t1 MTR_2g067310 42.197 173 60 4 25 197 58 190 5.27e-31 119
MS.gene058483.t1 MTR_4g017470 32.653 245 114 5 1 234 1 205 4.42e-28 115
MS.gene058483.t1 MTR_8g445860 31.489 235 139 7 14 236 13 237 2.09e-25 103
MS.gene058483.t1 MTR_7g066280 47.200 125 62 3 93 214 1 124 2.94e-24 103
MS.gene058483.t1 MTR_0150s0010 31.148 244 145 4 8 237 4 238 9.36e-24 99.4
MS.gene058483.t1 MTR_1g115440 29.536 237 148 5 13 237 10 239 1.44e-23 98.6
MS.gene058483.t1 MTR_8g023240 27.948 229 146 6 15 241 38 249 6.35e-20 92.0
MS.gene058483.t1 MTR_4g017550 35.407 209 106 11 43 234 20 216 1.71e-19 90.5
MS.gene058483.t1 MTR_7g063720 26.754 228 123 6 16 231 25 220 3.59e-19 86.3
MS.gene058483.t1 MTR_4g019240 41.818 110 55 4 1 102 1 109 8.16e-18 81.3
MS.gene058483.t1 MTR_1g115455 27.801 241 139 7 14 236 9 232 4.86e-15 74.3
MS.gene058483.t1 MTR_1g115450 38.824 85 47 1 14 98 7 86 9.29e-15 71.2
MS.gene058483.t1 MTR_7g063690 57.576 66 26 1 1 66 1 64 2.54e-14 72.8
MS.gene058483.t1 MTR_7g063690 37.383 107 63 3 136 241 74 177 3.24e-11 63.5
MS.gene058483.t1 MTR_7g100420 73.810 42 11 0 15 56 40 81 4.58e-13 70.5
MS.gene058483.t1 MTR_7g100420 29.565 230 141 8 14 234 177 394 9.50e-12 66.6
MS.gene058483.t1 MTR_7g066680 23.445 209 146 6 14 216 86 286 2.25e-12 68.2
MS.gene058483.t1 MTR_1g115470 36.364 88 51 1 14 101 6 88 1.57e-11 66.2
MS.gene058483.t1 MTR_0150s0030 32.673 101 59 3 8 104 2 97 3.88e-11 62.8
MS.gene058483.t1 MTR_8g445920 34.118 85 51 1 8 92 4 83 8.79e-11 59.3
MS.gene058483.t1 MTR_8g044890 34.118 85 51 1 8 92 4 83 8.79e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058483.t1 AT3G09110 37.500 224 140 0 14 237 9 232 8.62e-45 158
MS.gene058483.t1 AT3G09120 33.333 264 158 7 13 265 5 261 1.87e-36 135
MS.gene058483.t1 AT5G01150 35.772 246 139 6 14 247 9 247 1.38e-35 137
MS.gene058483.t1 AT3G09140 34.426 244 136 3 14 236 9 249 2.32e-35 136
MS.gene058483.t1 AT5G01120 34.498 229 143 3 15 236 10 238 1.20e-34 134
MS.gene058483.t1 AT5G01130 34.298 242 140 4 14 246 9 240 1.56e-32 127
MS.gene058483.t1 AT3G09140 32.721 272 131 6 14 236 9 277 2.61e-31 125
MS.gene058483.t1 AT5G43240 32.618 233 145 5 15 236 10 241 2.89e-29 119
MS.gene058483.t1 AT5G43240 32.618 233 145 5 15 236 10 241 2.89e-29 119
MS.gene058483.t1 AT5G43240 32.618 233 145 5 15 236 10 241 2.89e-29 119
MS.gene058483.t1 AT5G01140 30.531 226 132 4 14 235 9 213 1.27e-25 108
MS.gene058483.t1 AT5G01140 27.917 240 129 11 15 236 241 454 1.30e-13 72.8
MS.gene058483.t1 AT5G37320 29.915 234 143 8 15 230 10 240 2.76e-19 90.1

Find 62 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCAATTTGAGCTTAAA+TGG 0.177100 1.4:+7724300 None:intergenic
CAAAGTTAGCTTGAGAATTA+TGG 0.249994 1.4:-7725544 MS.gene058483:CDS
GAGGAAATAATCATCAAAAT+TGG 0.250442 1.4:-7724105 MS.gene058483:intron
AATATTGAAGCAGTGGAATT+TGG 0.254893 1.4:-7725402 MS.gene058483:CDS
CCTCCAGAACATTTGAGTTT+AGG 0.260762 1.4:-7725120 MS.gene058483:CDS
TAAAATTCCATGGAGTTTCT+TGG 0.280411 1.4:+7725294 None:intergenic
TGTACCATTTAAGCTCAAAT+TGG 0.304408 1.4:-7724304 MS.gene058483:CDS
TTTCCTAAACTCAAATGTTC+TGG 0.304784 1.4:+7725117 None:intergenic
TAAAGTTCCTCTGTCTGATT+TGG 0.321917 1.4:-7724127 MS.gene058483:CDS
CAATGTTCAGTTTCATCTGC+TGG 0.399362 1.4:+7725268 None:intergenic
AGTACTTCTTCTGTAGTGAT+TGG 0.403067 1.4:-7725230 MS.gene058483:CDS
TTAAATGGTACAAACCTATC+AGG 0.405748 1.4:+7724315 None:intergenic
ATCTTGATCAACAATATCTA+TGG 0.406573 1.4:-7725347 MS.gene058483:CDS
ATAATACTAGTGTTCCTGAT+AGG 0.408585 1.4:-7724329 MS.gene058483:CDS
TTAAGATTAAATCTGTCAAA+GGG 0.410150 1.4:+7724818 None:intergenic
TTCAAATGATGCTGAAACAT+AGG 0.414974 1.4:+7724269 None:intergenic
GTACTTCTTCTGTAGTGATT+GGG 0.418301 1.4:-7725229 MS.gene058483:CDS
ACAACTGTTGCCAAAACATT+AGG 0.426351 1.4:+7725039 None:intergenic
TCAACGTCTTCTTTGACAAA+TGG 0.430286 1.4:-7723947 MS.gene058483:CDS
CAATCATTTCTCCACCTTGA+CGG 0.431842 1.4:+7723904 None:intergenic
AGTTCCTCTGTCTGATTTGG+AGG 0.440102 1.4:-7724124 MS.gene058483:CDS
GAACATTTGAGTTTAGGAAA+TGG 0.449684 1.4:-7725114 MS.gene058483:CDS
TTCAACGGATTGAGTTTCAT+TGG 0.452229 1.4:+7725575 None:intergenic
TCTGCCACCATGTATGTTGA+TGG 0.452833 1.4:+7724207 None:intergenic
ATGCTATTGTGGTAGAGTAC+TGG 0.479902 1.4:-7725154 MS.gene058483:CDS
AGAGTTCTATATGCTGAGGC+TGG 0.480045 1.4:-7725504 MS.gene058483:CDS
TGCAGATCTAACAAAAGAAA+AGG 0.486365 1.4:-7724364 MS.gene058483:CDS
AGCAGCATTTCTTTGCATGC+CGG 0.487860 1.4:+7725321 None:intergenic
TGGAGAGAAACAATCTGATA+CGG 0.489375 1.4:-7724740 MS.gene058483:CDS
TTTAAGATTAAATCTGTCAA+AGG 0.492459 1.4:+7724817 None:intergenic
GAGTGTACTAGAAGAGAAAG+TGG 0.496261 1.4:-7725207 MS.gene058483:CDS
CCATTTAAGCTCAAATTGGT+TGG 0.500263 1.4:-7724300 MS.gene058483:CDS
AACTTTGTCAACTTGTTCAA+CGG 0.522676 1.4:+7725560 None:intergenic
GAATTATGGTGGACAAAGAA+AGG 0.530685 1.4:-7725530 MS.gene058483:CDS
GAAGTCAAATATTGAAGCAG+TGG 0.536513 1.4:-7725409 MS.gene058483:CDS
CTGCTGGAAATAAAATTCCA+TGG 0.541132 1.4:+7725284 None:intergenic
TCTATATGCTGAGGCTGGGA+AGG 0.548508 1.4:-7725499 MS.gene058483:CDS
AGTGTACTAGAAGAGAAAGT+GGG 0.556427 1.4:-7725206 MS.gene058483:CDS
CTCATTGTATCGAGGTGTGT+CGG 0.559520 1.4:-7725370 MS.gene058483:CDS
GAGTTCTATATGCTGAGGCT+GGG 0.563406 1.4:-7725503 MS.gene058483:CDS
GTACATCTACATCAGAAGCT+TGG 0.564486 1.4:-7725018 MS.gene058483:CDS
TGTGGAAATAAGCAAGAAAG+AGG 0.566925 1.4:-7724962 MS.gene058483:intron
GGAGAGAAACAATCTGATAC+GGG 0.574172 1.4:-7724739 MS.gene058483:intron
CCTAAACTCAAATGTTCTGG+AGG 0.578393 1.4:+7725120 None:intergenic
GCTGCAGCCAAGAAACTCCA+TGG 0.582763 1.4:-7725301 MS.gene058483:CDS
ATAGTAGATATTGACGACAT+TGG 0.589636 1.4:+7724168 None:intergenic
AGTTAGCTTGAGAATTATGG+TGG 0.600829 1.4:-7725541 MS.gene058483:CDS
TAGAGGACCATCAACATACA+TGG 0.625050 1.4:-7724214 MS.gene058483:CDS
TCAACAATATCTATGGTCAC+CGG 0.632396 1.4:-7725340 MS.gene058483:CDS
ATACTATAATAGCGATAGTG+AGG 0.636015 1.4:-7724394 MS.gene058483:CDS
GAACATTGATGACACACCGA+TGG 0.639013 1.4:-7725253 MS.gene058483:CDS
TAAGATTAAATCTGTCAAAG+GGG 0.639105 1.4:+7724819 None:intergenic
GAACAGAGTTCTATATGCTG+AGG 0.646830 1.4:-7725508 MS.gene058483:CDS
GCAGTTCATAACAACCGTCA+AGG 0.650677 1.4:-7723918 MS.gene058483:CDS
TGCTATCGTTGAACAAACTG+TGG 0.652160 1.4:-7724980 MS.gene058483:CDS
CTACAGAAGAAGTACTCCAT+CGG 0.654069 1.4:+7725237 None:intergenic
ATTTCCTCCAAATCAGACAG+AGG 0.658378 1.4:+7724120 None:intergenic
GCGGCATCGTCATATGCTAG+AGG 0.665739 1.4:-7724231 MS.gene058483:CDS
AGCATTAGCTCATTGTATCG+AGG 0.679958 1.4:-7725378 MS.gene058483:CDS
GTTCATAACAACCGTCAAGG+TGG 0.684380 1.4:-7723915 MS.gene058483:CDS
AGTCGTGCAATAGTCCCTAG+AGG 0.729079 1.4:+7725441 None:intergenic
AGGACCATCAACATACATGG+TGG 0.750812 1.4:-7724211 MS.gene058483:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATGAATTCGGAAA+TGG - chr1.4:7724721-7724740 MS.gene058483:intron 20.0%
!! CAAAGCAAAAAATATGAATT+CGG - chr1.4:7724715-7724734 MS.gene058483:intron 20.0%
!! GCAAATTAAAATAAATCACA+AGG + chr1.4:7725449-7725468 None:intergenic 20.0%
!! TGATAATTTATACAAAAGCA+TGG - chr1.4:7724922-7724941 MS.gene058483:intron 20.0%
!! TTAAGATTAAATCTGTCAAA+GGG + chr1.4:7724666-7724685 None:intergenic 20.0%
!!! TTTAAGATTAAATCTGTCAA+AGG + chr1.4:7724667-7724686 None:intergenic 20.0%
! AATCATCAAAATTGGTAAGA+AGG - chr1.4:7725384-7725403 MS.gene058483:CDS 25.0%
! ATCTTGATCAACAATATCTA+TGG - chr1.4:7724134-7724153 MS.gene058483:CDS 25.0%
! ATTACAGATTATATAGAAGC+CGG + chr1.4:7724553-7724572 None:intergenic 25.0%
! GAGGAAATAATCATCAAAAT+TGG - chr1.4:7725376-7725395 MS.gene058483:CDS 25.0%
! TAAGATTAAATCTGTCAAAG+GGG + chr1.4:7724665-7724684 None:intergenic 25.0%
! TATGTATGACAATAATATGC+TGG + chr1.4:7725070-7725089 None:intergenic 25.0%
! TGAAAAATTCGAATACATAG+CGG - chr1.4:7725231-7725250 MS.gene058483:CDS 25.0%
! TGTGAGATTAAATATCTTCT+GGG + chr1.4:7724959-7724978 None:intergenic 25.0%
!!! AGTTTTTTAACATTACCTCT+AGG - chr1.4:7724025-7724044 MS.gene058483:intron 25.0%
!!! CGAATTCATATTTTTTGCTT+TGG + chr1.4:7724717-7724736 None:intergenic 25.0%
!!! GTTTTTTAACATTACCTCTA+GGG - chr1.4:7724026-7724045 MS.gene058483:intron 25.0%
AATATTGAAGCAGTGGAATT+TGG - chr1.4:7724079-7724098 MS.gene058483:intron 30.0%
ACAAGGCATAATATAACACT+TGG + chr1.4:7725432-7725451 None:intergenic 30.0%
AGGAATCAAAAATGCTATTG+TGG - chr1.4:7724316-7724335 MS.gene058483:CDS 30.0%
ATAATACTAGTGTTCCTGAT+AGG - chr1.4:7725152-7725171 MS.gene058483:CDS 30.0%
ATACTATAATAGCGATAGTG+AGG - chr1.4:7725087-7725106 MS.gene058483:CDS 30.0%
ATAGTAGATATTGACGACAT+TGG + chr1.4:7725316-7725335 None:intergenic 30.0%
ATGACAATAATATGCTGGAA+AGG + chr1.4:7725065-7725084 None:intergenic 30.0%
CAGAAGATATTTAATCTCAC+AGG - chr1.4:7724958-7724977 MS.gene058483:intron 30.0%
CTGTGAGATTAAATATCTTC+TGG + chr1.4:7724960-7724979 None:intergenic 30.0%
GTAATAATTGGATTCTACCA+AGG + chr1.4:7725027-7725046 None:intergenic 30.0%
TAAAATTCCATGGAGTTTCT+TGG + chr1.4:7724190-7724209 None:intergenic 30.0%
TGCAGATCTAACAAAAGAAA+AGG - chr1.4:7725117-7725136 MS.gene058483:CDS 30.0%
TGTACCATTTAAGCTCAAAT+TGG - chr1.4:7725177-7725196 MS.gene058483:CDS 30.0%
TTAAATGGTACAAACCTATC+AGG + chr1.4:7725169-7725188 None:intergenic 30.0%
TTCAAATGATGCTGAAACAT+AGG + chr1.4:7725215-7725234 None:intergenic 30.0%
TTTCCTAAACTCAAATGTTC+TGG + chr1.4:7724367-7724386 None:intergenic 30.0%
! AACTTTGTCAACTTGTTCAA+CGG + chr1.4:7723924-7723943 None:intergenic 30.0%
! CAAAGTTAGCTTGAGAATTA+TGG - chr1.4:7723937-7723956 MS.gene058483:CDS 30.0%
! GAACATTTGAGTTTAGGAAA+TGG - chr1.4:7724367-7724386 MS.gene058483:CDS 30.0%
! TTTTGTGATGCCTAATGTTT+TGG - chr1.4:7724432-7724451 MS.gene058483:intron 30.0%
!! ATTTCATCCTTTGCTTTTGT+AGG - chr1.4:7724603-7724622 MS.gene058483:intron 30.0%
ACAACTGTTGCCAAAACATT+AGG + chr1.4:7724445-7724464 None:intergenic 35.0%
AGTACTTCTTCTGTAGTGAT+TGG - chr1.4:7724251-7724270 MS.gene058483:CDS 35.0%
AGTGTACTAGAAGAGAAAGT+GGG - chr1.4:7724275-7724294 MS.gene058483:CDS 35.0%
ATAATATGCTGGAAAGGATG+CGG + chr1.4:7725059-7725078 None:intergenic 35.0%
CATCAAAATTGGTAAGAAGG+AGG - chr1.4:7725387-7725406 MS.gene058483:CDS 35.0%
CCAACCAATTTGAGCTTAAA+TGG + chr1.4:7725184-7725203 None:intergenic 35.0%
CCATTTAAGCTCAAATTGGT+TGG - chr1.4:7725181-7725200 MS.gene058483:CDS 35.0%
CTGCTGGAAATAAAATTCCA+TGG + chr1.4:7724200-7724219 None:intergenic 35.0%
GAAGTCAAATATTGAAGCAG+TGG - chr1.4:7724072-7724091 MS.gene058483:intron 35.0%
GCTTAGTTAACTTCTCTTTG+AGG + chr1.4:7724985-7725004 None:intergenic 35.0%
GTACATGGTTGTGAAACTAA+TGG - chr1.4:7724768-7724787 MS.gene058483:CDS 35.0%
GTACTTCTTCTGTAGTGATT+GGG - chr1.4:7724252-7724271 MS.gene058483:CDS 35.0%
TAAAGTTCCTCTGTCTGATT+TGG - chr1.4:7725354-7725373 MS.gene058483:CDS 35.0%
TCAACAATATCTATGGTCAC+CGG - chr1.4:7724141-7724160 MS.gene058483:CDS 35.0%
TCAACGTCTTCTTTGACAAA+TGG - chr1.4:7725534-7725553 MS.gene058483:CDS 35.0%
TCAACTACCTACAAAAGCAA+AGG + chr1.4:7724613-7724632 None:intergenic 35.0%
TGGAGAGAAACAATCTGATA+CGG - chr1.4:7724741-7724760 MS.gene058483:CDS 35.0%
TGTGGAAATAAGCAAGAAAG+AGG - chr1.4:7724519-7724538 MS.gene058483:intron 35.0%
! AGTTAGCTTGAGAATTATGG+TGG - chr1.4:7723940-7723959 MS.gene058483:CDS 35.0%
! AGTTTTCTCACCTTACCTTT+GGG - chr1.4:7724854-7724873 MS.gene058483:CDS 35.0%
!! CAAGAAAGAGGTATGTTTTC+CGG - chr1.4:7724531-7724550 MS.gene058483:intron 35.0%
!! GAATTATGGTGGACAAAGAA+AGG - chr1.4:7723951-7723970 MS.gene058483:CDS 35.0%
!! TTCAACGGATTGAGTTTCAT+TGG + chr1.4:7723909-7723928 None:intergenic 35.0%
AGAAACAATCTGATACGGGT+AGG - chr1.4:7724746-7724765 MS.gene058483:CDS 40.0%
AGCATTAGCTCATTGTATCG+AGG - chr1.4:7724103-7724122 MS.gene058483:intron 40.0%
AGGCATCACAAAAAGATCGT+CGG + chr1.4:7724425-7724444 None:intergenic 40.0%
ATGCTATTGTGGTAGAGTAC+TGG - chr1.4:7724327-7724346 MS.gene058483:CDS 40.0%
ATTTCCTCCAAATCAGACAG+AGG + chr1.4:7725364-7725383 None:intergenic 40.0%
CAATCATTTCTCCACCTTGA+CGG + chr1.4:7725580-7725599 None:intergenic 40.0%
CAATGTTCAGTTTCATCTGC+TGG + chr1.4:7724216-7724235 None:intergenic 40.0%
CCTAAACTCAAATGTTCTGG+AGG + chr1.4:7724364-7724383 None:intergenic 40.0%
GAACAGAGTTCTATATGCTG+AGG - chr1.4:7723973-7723992 MS.gene058483:CDS 40.0%
GAGTGTACTAGAAGAGAAAG+TGG - chr1.4:7724274-7724293 MS.gene058483:CDS 40.0%
GATTCTACCAAGGAAATGTG+GGG + chr1.4:7725017-7725036 None:intergenic 40.0%
GGAGAGAAACAATCTGATAC+GGG - chr1.4:7724742-7724761 MS.gene058483:CDS 40.0%
GGATTCTACCAAGGAAATGT+GGG + chr1.4:7725018-7725037 None:intergenic 40.0%
GTACATCTACATCAGAAGCT+TGG - chr1.4:7724463-7724482 MS.gene058483:intron 40.0%
TAGAGGACCATCAACATACA+TGG - chr1.4:7725267-7725286 MS.gene058483:CDS 40.0%
TGCTATCGTTGAACAAACTG+TGG - chr1.4:7724501-7724520 MS.gene058483:intron 40.0%
TGGATTCTACCAAGGAAATG+TGG + chr1.4:7725019-7725038 None:intergenic 40.0%
! CAGTTTTCTCACCTTACCTT+TGG - chr1.4:7724853-7724872 MS.gene058483:CDS 40.0%
! CCTCCAGAACATTTGAGTTT+AGG - chr1.4:7724361-7724380 MS.gene058483:CDS 40.0%
! GGAATCTTTTGAGCACTATG+AGG - chr1.4:7724296-7724315 MS.gene058483:CDS 40.0%
!! CGGCGTTAGTTGGTAATAAT+TGG + chr1.4:7725039-7725058 None:intergenic 40.0%
!! CTACAGAAGAAGTACTCCAT+CGG + chr1.4:7724247-7724266 None:intergenic 40.0%
AGAGTTCTATATGCTGAGGC+TGG - chr1.4:7723977-7723996 MS.gene058483:CDS 45.0%
AGCAGCATTTCTTTGCATGC+CGG + chr1.4:7724163-7724182 None:intergenic 45.0%
AGGACCATCAACATACATGG+TGG - chr1.4:7725270-7725289 MS.gene058483:CDS 45.0%
ATCTGATACGGGTAGGTACA+TGG - chr1.4:7724753-7724772 MS.gene058483:CDS 45.0%
CTCATTGTATCGAGGTGTGT+CGG - chr1.4:7724111-7724130 MS.gene058483:CDS 45.0%
GAGTTCTATATGCTGAGGCT+GGG - chr1.4:7723978-7723997 MS.gene058483:CDS 45.0%
GCAGTTCATAACAACCGTCA+AGG - chr1.4:7725563-7725582 MS.gene058483:CDS 45.0%
GTTCATAACAACCGTCAAGG+TGG - chr1.4:7725566-7725585 MS.gene058483:CDS 45.0%
TCTGCCACCATGTATGTTGA+TGG + chr1.4:7725277-7725296 None:intergenic 45.0%
! GAACATTGATGACACACCGA+TGG - chr1.4:7724228-7724247 MS.gene058483:CDS 45.0%
!! AGTTCCTCTGTCTGATTTGG+AGG - chr1.4:7725357-7725376 MS.gene058483:CDS 45.0%
AGTCGTGCAATAGTCCCTAG+AGG + chr1.4:7724043-7724062 None:intergenic 50.0%
ATATGCACCACTGCTCCCAA+AGG + chr1.4:7724872-7724891 None:intergenic 50.0%
GCAGTGGTGCATATGCTTCA+AGG - chr1.4:7724878-7724897 MS.gene058483:intron 50.0%
TCTATATGCTGAGGCTGGGA+AGG - chr1.4:7723982-7724001 MS.gene058483:intron 50.0%
AGGAAATGTGGGGCACACTG+AGG + chr1.4:7725007-7725026 None:intergenic 55.0%
CACCACTGCTCCCAAAGGTA+AGG + chr1.4:7724867-7724886 None:intergenic 55.0%
CAGTGTGCCCCACATTTCCT+TGG - chr1.4:7725007-7725026 MS.gene058483:CDS 55.0%
GCGGCATCGTCATATGCTAG+AGG - chr1.4:7725250-7725269 MS.gene058483:CDS 55.0%
GCTGCAGCCAAGAAACTCCA+TGG - chr1.4:7724180-7724199 MS.gene058483:CDS 55.0%
GGAAAGGATGCGGCGTTAGT+TGG + chr1.4:7725049-7725068 None:intergenic 55.0%
! CACCTTACCTTTGGGAGCAG+TGG - chr1.4:7724862-7724881 MS.gene058483:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 7723899 7725604 7723899 ID=MS.gene058483
chr1.4 mRNA 7723899 7725604 7723899 ID=MS.gene058483.t1;Parent=MS.gene058483
chr1.4 exon 7724963 7725604 7724963 ID=MS.gene058483.t1.exon1;Parent=MS.gene058483.t1
chr1.4 CDS 7724963 7725604 7724963 ID=cds.MS.gene058483.t1;Parent=MS.gene058483.t1
chr1.4 exon 7724740 7724878 7724740 ID=MS.gene058483.t1.exon2;Parent=MS.gene058483.t1
chr1.4 CDS 7724740 7724878 7724740 ID=cds.MS.gene058483.t1;Parent=MS.gene058483.t1
chr1.4 exon 7724106 7724432 7724106 ID=MS.gene058483.t1.exon3;Parent=MS.gene058483.t1
chr1.4 CDS 7724106 7724432 7724106 ID=cds.MS.gene058483.t1;Parent=MS.gene058483.t1
chr1.4 exon 7723899 7723999 7723899 ID=MS.gene058483.t1.exon4;Parent=MS.gene058483.t1
chr1.4 CDS 7723899 7723999 7723899 ID=cds.MS.gene058483.t1;Parent=MS.gene058483.t1
Gene Sequence

>MS.gene058483

ATGGCTGCCAATGAAACTCAATCCGTTGAACAAGTTGACAAAGTTAGCTTGAGAATTATGGTGGACAAAGAAAGGAACAGAGTTCTATATGCTGAGGCTGGGAAGGATTTTGTCGATGTTCTTTTGAGTTTTTTAACATTACCTCTAGGGACTATTGCACGACTCATTTCTCAGAAGTCAAATATTGAAGCAGTGGAATTTGGCAGCATTAGCTCATTGTATCGAGGTGTGTCGGATCTTGATCAACAATATCTATGGTCACCGGCATGCAAAGAAATGCTGCTGCAGCCAAGAAACTCCATGGAATTTTATTTCCAGCAGATGAAACTGAACATTGATGACACACCGATGGAGTACTTCTTCTGTAGTGATTGGGAGTGTACTAGAAGAGAAAGTGGGAATCTTTTGAGCACTATGAGGAATCAAAAATGCTATTGTGGTAGAGTACTGGACAAAGATGTTCCTCCAGAACATTTGAGTTTAGGAAATGGCTTTGTTGAAGAAACTGCTACTTTTATCATTTCCGACGATCTTTTTGTGATGCCTAATGTTTTGGCAACAGTTGTACATCTACATCAGAAGCTTGGAATCGATATGAATGATGCTATCGTTGAACAAACTGTGGAAATAAGCAAGAAAGAGGTATGTTTTCCGGCTTCTATATAATCTGTAATATTGTTTTTTTTTTTTTTTGTCAATTGATTATTTCATCCTTTGCTTTTGTAGGTAGTTGATCTTCTCAAATTATCATTGTTCTCAAACACCCCTTTGACAGATTTAATCTTAAAGAAGAATCAATTTGTTGATAACATTTACCAAAGCAAAAAATATGAATTCGGAAATGGAGAGAAACAATCTGATACGGGTAGGTACATGGTTGTGAAACTAATGGTAAGAAAATCAACTAGAGTTTCTATTTGCTGAAGCACAAGAAAATTTTCTTGACTTTGTTTTCAGTTTTCTCACCTTACCTTTGGGAGCAGTGGTGCATATGCTTCAAGGAATCTCTTCTTTAAATTGCATTGATAATTTATACAAAAGCATGGCAGAGTTGTGTCCCAGAAGATATTTAATCTCACAGGACCTCAAAGAGAAGTTAACTAAGCCTCAGTGTGCCCCACATTTCCTTGGTAGAATCCAATTATTACCAACTAACGCCGCATCCTTTCCAGCATATTATTGTCATACATACTATAATAGCGATAGTGAGGTGTATTGTGCAGATCTAACAAAAGAAAAGGCGCGTTTGAAGAATAATACTAGTGTTCCTGATAGGTTTGTACCATTTAAGCTCAAATTGGTTGGTTTTAAGTCCTATGTTTCAGCATCATTTGAAAAATTCGAATACATAGCGGCATCGTCATATGCTAGAGGACCATCAACATACATGGTGGCAGATGACTTGCGTGTGACTCCAATGTCGTCAATATCTACTATGTCATATCTAAATAGATCTAAAGTTCCTCTGTCTGATTTGGAGGAAATAATCATCAAAATTGGTAAGAAGGAGGTAAGTATTTTCACAAGACTCCAAGTGTTATATTATGCCTTGTGATTTATTTTAATTTGCTTACATTATACTTGCGTTTTGTTTACATGTTACAGTGTCTCAGCATACTAAAAGCTTTGATAATCTCAACGTCTTCTTTGACAAATGGTCTCAAGCAGTTCATAACAACCGTCAAGGTGGAGAAATGATTGATTAA
Protein sequence

>MS.gene058483.t1

MAANETQSVEQVDKVSLRIMVDKERNRVLYAEAGKDFVDVLLSFLTLPLGTIARLISQKSNIEAVEFGSISSLYRGVSDLDQQYLWSPACKEMLLQPRNSMEFYFQQMKLNIDDTPMEYFFCSDWECTRRESGNLLSTMRNQKCYCGRVLDKDVPPEHLSLGNGFVEETATFIISDDLFVMPNVLATVVHLHQKLGIDMNDAIVEQTVEISKKEVVDLLKLSLFSNTPLTDLILKKNQFVDNIYQSKKYEFGNGEKQSDTAYYCHTYYNSDSEVYCADLTKEKARLKNNTSVPDRFVPFKLKLVGFKSYVSASFEKFEYIAASSYARGPSTYMVADDLRVTPMSSISTMSYLNRSKVPLSDLEEIIIKIVSQHTKSFDNLNVFFDKWSQAVHNNRQGGEMID