AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96847

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96847.t1 MTR_7g062280 78.819 491 88 3 5 480 3 492 0.0 750
MS.gene96847.t1 MTR_7g062300 81.971 477 76 5 1 472 1 472 0.0 746
MS.gene96847.t1 MTR_7g063920 64.938 482 122 5 1 480 1 437 0.0 571
MS.gene96847.t1 MTR_7g063840 56.813 477 195 7 8 480 5 474 3.46e-169 485
MS.gene96847.t1 MTR_7g063880 57.407 486 182 9 1 479 1 468 9.35e-168 481
MS.gene96847.t1 MTR_7g063900 55.400 500 192 13 1 480 1 489 1.02e-162 469
MS.gene96847.t1 MTR_7g063660 54.451 483 203 7 7 480 4 478 2.43e-161 465
MS.gene96847.t1 MTR_7g063830 53.926 484 178 11 1 479 1 444 5.99e-153 443
MS.gene96847.t1 MTR_7g063820 52.953 491 214 8 1 480 1 485 1.66e-150 438
MS.gene96847.t1 MTR_3g007740 53.586 474 178 9 8 474 5 443 9.18e-150 434
MS.gene96847.t1 MTR_7g063890 54.918 488 196 12 9 479 24 504 5.27e-143 419
MS.gene96847.t1 MTR_7g063670 50.418 478 198 8 10 480 13 458 1.24e-137 404
MS.gene96847.t1 MTR_7g066570 40.524 496 256 11 4 477 6 484 1.51e-106 328
MS.gene96847.t1 MTR_7g066430 41.020 490 251 8 13 473 5 485 2.45e-105 323
MS.gene96847.t1 MTR_7g066430 28.085 235 136 8 253 467 4 225 5.32e-12 68.2
MS.gene96847.t1 MTR_7g066410 39.567 508 264 8 10 475 8 514 3.09e-102 315
MS.gene96847.t1 MTR_7g066260 40.400 500 235 10 1 474 1 463 4.89e-101 311
MS.gene96847.t1 MTR_3g065200 42.140 458 204 11 12 460 3 408 3.91e-98 303
MS.gene96847.t1 MTR_7g066480 40.756 476 200 12 12 474 16 422 8.14e-93 288
MS.gene96847.t1 MTR_7g012680 40.404 495 237 14 1 480 1 452 2.01e-92 288
MS.gene96847.t1 MTR_7g058710 36.957 506 271 15 1 480 1 484 6.16e-92 288
MS.gene96847.t1 MTR_7g066360 40.900 489 221 14 2 469 4 445 4.99e-88 278
MS.gene96847.t1 MTR_7g066580 38.784 477 233 11 24 476 7 448 5.51e-87 274
MS.gene96847.t1 MTR_7g066340 36.235 494 255 11 1 474 1 454 4.26e-85 270
MS.gene96847.t1 MTR_7g066350 38.285 478 248 10 11 475 8 451 1.62e-84 268
MS.gene96847.t1 MTR_7g063720 55.200 250 92 5 233 480 2 233 2.84e-84 259
MS.gene96847.t1 MTR_7g063720 28.704 216 132 7 14 227 25 220 3.45e-15 75.5
MS.gene96847.t1 MTR_7g066490 39.873 474 193 14 12 474 16 408 5.31e-84 265
MS.gene96847.t1 MTR_7g066400 34.686 493 250 10 1 475 1 439 2.72e-81 259
MS.gene96847.t1 MTR_1g041315 35.967 481 248 11 3 457 5 451 8.02e-80 256
MS.gene96847.t1 MTR_7g066290 36.864 491 236 12 1 474 1 434 6.06e-79 253
MS.gene96847.t1 MTR_7g062270 65.027 183 61 2 6 185 3 185 3.86e-73 236
MS.gene96847.t1 MTR_4g019310 34.257 505 293 14 6 480 2 497 5.16e-71 234
MS.gene96847.t1 MTR_7g066310 32.833 466 224 9 11 474 6 384 3.15e-64 213
MS.gene96847.t1 MTR_7g063850 43.711 318 131 9 180 479 1 288 4.76e-63 207
MS.gene96847.t1 MTR_2g029400 31.513 476 236 10 2 462 4 404 1.25e-60 204
MS.gene96847.t1 MTR_7g058700 33.884 484 207 14 24 480 531 928 2.85e-60 213
MS.gene96847.t1 MTR_4g017830 31.407 519 304 15 1 479 1 507 3.25e-60 206
MS.gene96847.t1 MTR_7g063690 41.696 283 98 6 3 280 2 222 2.69e-53 179
MS.gene96847.t1 MTR_7g100420 40.836 311 161 6 166 469 99 393 1.25e-52 183
MS.gene96847.t1 MTR_7g100420 66.000 50 17 0 6 55 33 82 2.38e-12 68.9
MS.gene96847.t1 MTR_4g017440 30.725 524 290 19 1 473 1 502 5.93e-51 181
MS.gene96847.t1 MTR_4g017470 29.014 517 288 15 1 479 1 476 1.40e-50 179
MS.gene96847.t1 MTR_4g017410 30.593 523 279 17 6 479 3 490 5.46e-50 178
MS.gene96847.t1 MTR_4g019340 30.328 488 282 13 10 461 36 501 5.93e-50 178
MS.gene96847.t1 MTR_4g017610 31.452 496 287 18 5 469 2 475 2.31e-46 167
MS.gene96847.t1 MTR_7g066280 30.273 403 240 9 95 474 7 391 2.07e-44 161
MS.gene96847.t1 MTR_7g066680 35.390 308 141 7 210 469 37 334 9.01e-43 155
MS.gene96847.t1 MTR_8g023240 26.931 479 293 13 13 467 38 483 2.99e-40 152
MS.gene96847.t1 MTR_1g014060 42.995 207 106 7 21 220 9 210 8.32e-40 148
MS.gene96847.t1 MTR_1g014060 40.404 198 102 3 283 480 210 391 1.39e-32 128
MS.gene96847.t1 MTR_1g014060 31.163 215 136 7 266 473 13 222 9.15e-18 85.5
MS.gene96847.t1 MTR_4g017550 30.316 475 258 19 42 469 21 469 1.71e-35 138
MS.gene96847.t1 MTR_8g445860 32.258 248 134 10 3 233 8 238 3.45e-23 98.6
MS.gene96847.t1 MTR_7g063760 56.757 74 31 1 408 480 1 74 2.61e-21 88.2
MS.gene96847.t1 MTR_1g115440 29.565 230 140 7 253 467 11 233 1.08e-18 85.5
MS.gene96847.t1 MTR_0150s0010 28.689 244 149 6 5 232 3 237 7.54e-18 83.2
MS.gene96847.t1 MTR_7g066390 52.703 74 35 0 401 474 50 123 1.07e-16 77.8
MS.gene96847.t1 MTR_2g067310 36.145 166 59 5 18 178 53 176 1.73e-16 79.3
MS.gene96847.t1 MTR_7g063870 58.929 56 23 0 6 61 25 80 2.52e-14 73.2
MS.gene96847.t1 MTR_7g063870 48.193 83 42 1 136 217 75 157 4.86e-13 69.3
MS.gene96847.t1 MTR_1g115455 27.459 244 155 6 1 233 1 233 3.33e-14 72.4
MS.gene96847.t1 MTR_1g115455 26.754 228 151 5 249 466 5 226 3.57e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96847.t1 AT3G09140 32.136 529 271 20 1 475 1 495 2.43e-62 211
MS.gene96847.t1 AT5G01120 31.325 498 285 12 13 472 10 488 1.96e-57 198
MS.gene96847.t1 AT3G09140 30.521 557 271 21 1 475 1 523 3.06e-57 198
MS.gene96847.t1 AT5G01150 31.213 503 296 11 7 479 4 486 7.80e-57 196
MS.gene96847.t1 AT5G01130 32.049 493 271 16 7 480 4 451 8.91e-53 184
MS.gene96847.t1 AT5G01140 30.328 488 293 10 7 480 4 458 1.74e-50 179
MS.gene96847.t1 AT3G09110 35.423 319 177 8 14 314 11 318 6.63e-50 174
MS.gene96847.t1 AT5G43240 29.400 500 290 13 13 469 10 489 3.04e-47 171
MS.gene96847.t1 AT5G43240 29.400 500 290 13 13 469 10 489 3.04e-47 171
MS.gene96847.t1 AT5G43240 29.400 500 290 13 13 469 10 489 3.04e-47 171
MS.gene96847.t1 AT3G09120 35.583 326 164 10 11 307 5 313 1.97e-45 161
MS.gene96847.t1 AT3G09120 29.075 227 146 5 253 467 6 229 1.00e-14 75.5
MS.gene96847.t1 AT5G37320 28.884 502 288 16 13 475 10 481 9.34e-37 141
MS.gene96847.t1 AT5G43240 25.697 323 214 7 165 469 31 345 3.40e-16 80.5

Find 84 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCCTCTTGATGATTTAA+AGG 0.145412 7.3:-42842682 MS.gene96847:CDS
CTTGACTCCAATTTCAGCTT+TGG 0.241536 7.3:-42842724 MS.gene96847:CDS
TAACTAGCTTTAGATTGATT+TGG 0.246947 7.3:+42843225 None:intergenic
TAATAGAATATTGTTATGTT+AGG 0.273885 7.3:-42842848 MS.gene96847:CDS
CATCCGATGATGTCAAATAT+TGG 0.288315 7.3:+42843030 None:intergenic
GGTGGAATTGTACGGATATT+TGG 0.289019 7.3:-42843116 MS.gene96847:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.290015 7.3:-42842723 MS.gene96847:CDS
TGTGAGCCAAACCATTTGTT+AGG 0.308515 7.3:+42842501 None:intergenic
ATATTGTTATGTTAGGGATT+TGG 0.326327 7.3:-42842841 MS.gene96847:CDS
TTTAGTCTGTTCACGGAGTT+TGG 0.330311 7.3:-42843524 MS.gene96847:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.3:+42842717 None:intergenic
GTACAACAGTATAGTTGATT+TGG 0.340416 7.3:-42843060 MS.gene96847:CDS
GGGAGAGGTTTAAGGAAAAT+TGG 0.345259 7.3:+42843629 None:intergenic
TTATCGAAGTGTTGCAGATC+TGG 0.352603 7.3:-42843864 MS.gene96847:CDS
CCTGGTGTTCATGTATATTA+TGG 0.356034 7.3:-42842933 MS.gene96847:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.3:+42844036 None:intergenic
CTTGTATAGTCAATACAGTT+TGG 0.367447 7.3:+42843548 None:intergenic
TTATCTAATCTGATGATTCC+TGG 0.371898 7.3:-42842807 MS.gene96847:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.3:-42843939 MS.gene96847:CDS
AAAGTCTTGTTTGCTGAAGC+AGG 0.408169 7.3:-42844004 MS.gene96847:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.3:-42843956 MS.gene96847:CDS
GTAGTGTCTTAGCATATTGA+AGG 0.414424 7.3:-42842546 MS.gene96847:intron
ATCTGCCCTAACAAATGGTT+TGG 0.417279 7.3:-42842507 MS.gene96847:CDS
TTGTGTGATGTTGAAATTAG+TGG 0.420260 7.3:-42843254 MS.gene96847:CDS
CAAATCTGTCAAGGTTGTCT+TGG 0.431681 7.3:+42843319 None:intergenic
AATAGAATATTGTTATGTTA+GGG 0.432337 7.3:-42842847 MS.gene96847:CDS
TGTTCCTTGGGAAGCATCAA+TGG 0.434367 7.3:-42843086 MS.gene96847:CDS
TACACCATTAACAAATCCTT+GGG 0.434973 7.3:+42843607 None:intergenic
ATTTGGTGGGAATTGTTCCT+TGG 0.434997 7.3:-42843099 MS.gene96847:CDS
TGAACACCAGGATCAAGAAT+TGG 0.446975 7.3:+42842945 None:intergenic
ATATTACCAATTCTTGATCC+TGG 0.456535 7.3:-42842951 MS.gene96847:CDS
TCACATGTTAGCTGAAGTTA+AGG 0.457781 7.3:-42842483 MS.gene96847:CDS
TACAAGCTTTAGTCTGTTCA+CGG 0.462133 7.3:-42843531 MS.gene96847:CDS
TGCTTGCTTAACTGTAACTG+TGG 0.466072 7.3:+42842975 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.3:-42843468 MS.gene96847:intron
TTTGGTGGGAATTGTTCCTT+GGG 0.475646 7.3:-42843098 MS.gene96847:CDS
TCAACATCTGCCCTAACAAA+TGG 0.480143 7.3:-42842512 MS.gene96847:CDS
CTACACCATTAACAAATCCT+TGG 0.482540 7.3:+42843606 None:intergenic
TTCCTTTGGGTGGAATTGTA+CGG 0.485161 7.3:-42843124 MS.gene96847:CDS
AACCATCCCTCGAGAAATCA+AGG 0.489053 7.3:-42843283 MS.gene96847:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.3:-42843134 MS.gene96847:CDS
CTTGTTTGCTGAAGCAGGGA+AGG 0.500458 7.3:-42843999 MS.gene96847:CDS
AACCTTGATTTCTCGAGGGA+TGG 0.500864 7.3:+42843281 None:intergenic
AACAAGGTATTGTATGCTCA+AGG 0.515072 7.3:-42843188 MS.gene96847:CDS
GTGAGCCAAACCATTTGTTA+GGG 0.517645 7.3:+42842502 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.3:-42843019 MS.gene96847:CDS
AGTTGTCACCATTGGCATCA+AGG 0.519743 7.3:-42842655 MS.gene96847:CDS
TGATGTGATCATCTCATGAT+AGG 0.527363 7.3:+42843700 None:intergenic
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.3:+42842765 None:intergenic
GTAGAGAAAGAATCTAACAT+AGG 0.539383 7.3:-42843917 MS.gene96847:CDS
CCTGGTGATGGTTATGTCAA+GGG 0.540431 7.3:-42842789 MS.gene96847:CDS
ATAGGAGCGACGTCTAGATT+CGG 0.541539 7.3:+42843718 None:intergenic
TAGAGAAAGAATCTAACATA+GGG 0.547818 7.3:-42843916 MS.gene96847:CDS
GGAATTGTACGGATATTTGG+TGG 0.549196 7.3:-42843113 MS.gene96847:CDS
CAAAGCTGAAATTGGAGTCA+AGG 0.557202 7.3:+42842725 None:intergenic
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.3:-42843492 MS.gene96847:CDS
CCATAATATACATGAACACC+AGG 0.558310 7.3:+42842933 None:intergenic
GCACATGTGAAGTACTTCGT+TGG 0.559060 7.3:+42843740 None:intergenic
AAACCAATATTTGACATCAT+CGG 0.567419 7.3:-42843033 MS.gene96847:CDS
TTTCTCTACCAATCTCGCAA+TGG 0.567743 7.3:+42843931 None:intergenic
AAGTCTTGTTTGCTGAAGCA+GGG 0.569553 7.3:-42844003 MS.gene96847:CDS
TCCTGGTGATGGTTATGTCA+AGG 0.575341 7.3:-42842790 MS.gene96847:CDS
AGATAAACCTTGATTTCTCG+AGG 0.576652 7.3:+42843276 None:intergenic
CCCTTGACATAACCATCACC+AGG 0.582930 7.3:+42842789 None:intergenic
AACATAGGGCAAGTTACAGT+CGG 0.583059 7.3:-42843902 MS.gene96847:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.3:+42843941 None:intergenic
GAATTGTACGGATATTTGGT+GGG 0.585029 7.3:-42843112 MS.gene96847:CDS
GCTTGCTTAACTGTAACTGT+GGG 0.590306 7.3:+42842976 None:intergenic
ATCCGTACAATTCCACCCAA+AGG 0.601452 7.3:+42843122 None:intergenic
CATGTTAGCTGAAGTTAAGG+AGG 0.602921 7.3:-42842480 MS.gene96847:CDS
AATCTGATGATTCCTGGTGA+TGG 0.612908 7.3:-42842801 MS.gene96847:CDS
TGTAACTGTGGGGCAATGCG+AGG 0.621560 7.3:+42842987 None:intergenic
AATGCTGCTAATCAACTCAT+CGG 0.629544 7.3:-42843807 MS.gene96847:CDS
TATAAGAAAATCAGATAACA+AGG 0.631180 7.3:-42843204 MS.gene96847:CDS
GATAAACCTTGATTTCTCGA+GGG 0.640297 7.3:+42843277 None:intergenic
ACAAGGTATTGTATGCTCAA+GGG 0.641517 7.3:-42843187 MS.gene96847:CDS
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.3:-42844068 MS.gene96847:CDS
AGTGTAAAAGAACGACCACA+TGG 0.649415 7.3:+42843653 None:intergenic
CAAACCATTGATGCTTCCCA+AGG 0.669295 7.3:+42843082 None:intergenic
GATAAACATAAATGTCCATG+TGG 0.678699 7.3:-42843668 MS.gene96847:CDS
CACCATTAACAAATCCTTGG+GGG 0.679874 7.3:+42843609 None:intergenic
ACACCATTAACAAATCCTTG+GGG 0.695095 7.3:+42843608 None:intergenic
TGTCACCATTGGCATCAAGG+AGG 0.741971 7.3:-42842652 MS.gene96847:intron
CTTGCTTAACTGTAACTGTG+GGG 0.751008 7.3:+42842977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGAATATTGTTATGTTA+GGG - chr7.3:42843701-42843720 MS.gene96847:CDS 15.0%
!! TAATAGAATATTGTTATGTT+AGG - chr7.3:42843700-42843719 MS.gene96847:CDS 15.0%
!! ATCAATCAAAAAATTAAGAG+AGG + chr7.3:42843151-42843170 None:intergenic 20.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.3:42843344-42843363 MS.gene96847:CDS 20.0%
! AAACCAATATTTGACATCAT+CGG - chr7.3:42843515-42843534 MS.gene96847:CDS 25.0%
! ATATTGTTATGTTAGGGATT+TGG - chr7.3:42843707-42843726 MS.gene96847:CDS 25.0%
! TAGAGAAAGAATCTAACATA+GGG - chr7.3:42842632-42842651 MS.gene96847:intron 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.3:42842517-42842536 MS.gene96847:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.3:42843410-42843429 MS.gene96847:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.3:42843411-42843430 MS.gene96847:intron 25.0%
!! TTTTCCTTTAAATCATCAAG+AGG + chr7.3:42843873-42843892 None:intergenic 25.0%
!!! TAACTAGCTTTAGATTGATT+TGG + chr7.3:42843326-42843345 None:intergenic 25.0%
ATATTACCAATTCTTGATCC+TGG - chr7.3:42843597-42843616 MS.gene96847:CDS 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.3:42843003-42843022 None:intergenic 30.0%
GATAAACATAAATGTCCATG+TGG - chr7.3:42842880-42842899 MS.gene96847:CDS 30.0%
GTACAACAGTATAGTTGATT+TGG - chr7.3:42843488-42843507 MS.gene96847:CDS 30.0%
GTAGAGAAAGAATCTAACAT+AGG - chr7.3:42842631-42842650 MS.gene96847:intron 30.0%
TACACCATTAACAAATCCTT+GGG + chr7.3:42842944-42842963 None:intergenic 30.0%
TTATCTAATCTGATGATTCC+TGG - chr7.3:42843741-42843760 MS.gene96847:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.3:42842515-42842534 None:intergenic 30.0%
TTGTGTGATGTTGAAATTAG+TGG - chr7.3:42843294-42843313 MS.gene96847:CDS 30.0%
! AACTCCTCTTGATGATTTAA+AGG - chr7.3:42843866-42843885 MS.gene96847:CDS 30.0%
! CAACTACAAAACCTTTTCTT+TGG + chr7.3:42843094-42843113 None:intergenic 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.3:42843791-42843810 MS.gene96847:CDS 30.0%
!! ACCTTGACAGATTTGTTTTT+AGG - chr7.3:42843237-42843256 MS.gene96847:CDS 30.0%
!!! CCTTGACAGATTTGTTTTTA+GGG - chr7.3:42843238-42843257 MS.gene96847:CDS 30.0%
AAGGAAAAAGTTGTCACCAT+TGG - chr7.3:42843885-42843904 MS.gene96847:CDS 35.0%
AATGCTGCTAATCAACTCAT+CGG - chr7.3:42842741-42842760 MS.gene96847:CDS 35.0%
ACACCATTAACAAATCCTTG+GGG + chr7.3:42842943-42842962 None:intergenic 35.0%
AGATAAACCTTGATTTCTCG+AGG + chr7.3:42843275-42843294 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.3:42842592-42842611 MS.gene96847:intron 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.3:42843834-42843853 None:intergenic 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7.3:42843521-42843540 None:intergenic 35.0%
CCATAATATACATGAACACC+AGG + chr7.3:42843618-42843637 None:intergenic 35.0%
CCCTAAAAACAAATCTGTCA+AGG + chr7.3:42843241-42843260 None:intergenic 35.0%
CCTGGTGTTCATGTATATTA+TGG - chr7.3:42843615-42843634 MS.gene96847:CDS 35.0%
CTACACCATTAACAAATCCT+TGG + chr7.3:42842945-42842964 None:intergenic 35.0%
GAATTGTACGGATATTTGGT+GGG - chr7.3:42843436-42843455 MS.gene96847:intron 35.0%
GACACTACAACAAGACAATA+AGG + chr7.3:42843990-42844009 None:intergenic 35.0%
GATAAACCTTGATTTCTCGA+GGG + chr7.3:42843274-42843293 None:intergenic 35.0%
GTAGTGTCTTAGCATATTGA+AGG - chr7.3:42844002-42844021 MS.gene96847:CDS 35.0%
TCACATGTTAGCTGAAGTTA+AGG - chr7.3:42844065-42844084 MS.gene96847:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7.3:42843080-42843099 MS.gene96847:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7.3:42843786-42843805 None:intergenic 35.0%
TGATGTGATCATCTCATGAT+AGG + chr7.3:42842851-42842870 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.3:42843044-42843063 MS.gene96847:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.3:42843825-42843844 MS.gene96847:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7.3:42843414-42843433 MS.gene96847:intron 35.0%
! CATCAAGAGGAGTTTTCAAA+CGG + chr7.3:42843860-42843879 None:intergenic 35.0%
! CTTCTACTGTTTTATACTGC+AGG - chr7.3:42843176-42843195 MS.gene96847:CDS 35.0%
! TACAAGCTTTAGTCTGTTCA+CGG - chr7.3:42843017-42843036 MS.gene96847:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.3:42843360-42843379 MS.gene96847:intron 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.3:42843361-42843380 MS.gene96847:intron 35.0%
AACATAGGGCAAGTTACAGT+CGG - chr7.3:42842646-42842665 MS.gene96847:intron 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.3:42842610-42842629 None:intergenic 40.0%
AATCTGATGATTCCTGGTGA+TGG - chr7.3:42843747-42843766 MS.gene96847:CDS 40.0%
AGTGTAAAAGAACGACCACA+TGG + chr7.3:42842898-42842917 None:intergenic 40.0%
ATCTGCCCTAACAAATGGTT+TGG - chr7.3:42844041-42844060 MS.gene96847:CDS 40.0%
CAAAGCTGAAATTGGAGTCA+AGG + chr7.3:42843826-42843845 None:intergenic 40.0%
CAAATCTGTCAAGGTTGTCT+TGG + chr7.3:42843232-42843251 None:intergenic 40.0%
CACCATTAACAAATCCTTGG+GGG + chr7.3:42842942-42842961 None:intergenic 40.0%
CATGTTAGCTGAAGTTAAGG+AGG - chr7.3:42844068-42844087 MS.gene96847:CDS 40.0%
CTTGACTCCAATTTCAGCTT+TGG - chr7.3:42843824-42843843 MS.gene96847:CDS 40.0%
CTTGCTTAACTGTAACTGTG+GGG + chr7.3:42843574-42843593 None:intergenic 40.0%
GCTTGCTTAACTGTAACTGT+GGG + chr7.3:42843575-42843594 None:intergenic 40.0%
GGAATTGTACGGATATTTGG+TGG - chr7.3:42843435-42843454 MS.gene96847:intron 40.0%
GGGAGAGGTTTAAGGAAAAT+TGG + chr7.3:42842922-42842941 None:intergenic 40.0%
GGTGGAATTGTACGGATATT+TGG - chr7.3:42843432-42843451 MS.gene96847:intron 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.3:42842480-42842499 MS.gene96847:CDS 40.0%
TCAACATCTGCCCTAACAAA+TGG - chr7.3:42844036-42844055 MS.gene96847:CDS 40.0%
TGAACACCAGGATCAAGAAT+TGG + chr7.3:42843606-42843625 None:intergenic 40.0%
TGCTTGCTTAACTGTAACTG+TGG + chr7.3:42843576-42843595 None:intergenic 40.0%
TGTGAGCCAAACCATTTGTT+AGG + chr7.3:42844050-42844069 None:intergenic 40.0%
TTCCTTTGGGTGGAATTGTA+CGG - chr7.3:42843424-42843443 MS.gene96847:intron 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.3:42842609-42842628 MS.gene96847:intron 40.0%
TTTAGTCTGTTCACGGAGTT+TGG - chr7.3:42843024-42843043 MS.gene96847:CDS 40.0%
TTTCTCTACCAATCTCGCAA+TGG + chr7.3:42842620-42842639 None:intergenic 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7.3:42843450-42843469 MS.gene96847:intron 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7.3:42843060-42843079 None:intergenic 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7.3:42843449-42843468 MS.gene96847:intron 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7.3:42843059-42843078 None:intergenic 40.0%
! GTGAGCCAAACCATTTGTTA+GGG + chr7.3:42844049-42844068 None:intergenic 40.0%
! TTTTACCTCCTTGATGCCAA+TGG + chr7.3:42843904-42843923 None:intergenic 40.0%
!! AAAGTCTTGTTTGCTGAAGC+AGG - chr7.3:42842544-42842563 MS.gene96847:CDS 40.0%
!! AAGTCTTGTTTGCTGAAGCA+GGG - chr7.3:42842545-42842564 MS.gene96847:CDS 40.0%
!! TTATCGAAGTGTTGCAGATC+TGG - chr7.3:42842684-42842703 MS.gene96847:CDS 40.0%
AACCATCCCTCGAGAAATCA+AGG - chr7.3:42843265-42843284 MS.gene96847:CDS 45.0%
AACCTTGATTTCTCGAGGGA+TGG + chr7.3:42843270-42843289 None:intergenic 45.0%
AGTTGTCACCATTGGCATCA+AGG - chr7.3:42843893-42843912 MS.gene96847:CDS 45.0%
ATAGGAGCGACGTCTAGATT+CGG + chr7.3:42842833-42842852 None:intergenic 45.0%
ATCCGTACAATTCCACCCAA+AGG + chr7.3:42843429-42843448 None:intergenic 45.0%
CAAACCATTGATGCTTCCCA+AGG + chr7.3:42843469-42843488 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7.3:42843529-42843548 MS.gene96847:CDS 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7.3:42843056-42843075 MS.gene96847:CDS 45.0%
TTAACAAATCCTTGGGGGAG+AGG + chr7.3:42842937-42842956 None:intergenic 45.0%
! GCACATGTGAAGTACTTCGT+TGG + chr7.3:42842811-42842830 None:intergenic 45.0%
!! CCTGGTGATGGTTATGTCAA+GGG - chr7.3:42843759-42843778 MS.gene96847:CDS 45.0%
!! CTCCCCCAAGGATTTGTTAA+TGG - chr7.3:42842937-42842956 MS.gene96847:CDS 45.0%
!! TCCTGGTGATGGTTATGTCA+AGG - chr7.3:42843758-42843777 MS.gene96847:CDS 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7.3:42843462-42843481 MS.gene96847:intron 45.0%
ATCCTTGGGGGAGAGGTTTA+AGG + chr7.3:42842930-42842949 None:intergenic 50.0%
CCCTTGACATAACCATCACC+AGG + chr7.3:42843762-42843781 None:intergenic 50.0%
TGTCACCATTGGCATCAAGG+AGG - chr7.3:42843896-42843915 MS.gene96847:CDS 50.0%
TTCCTTAAACCTCTCCCCCA+AGG - chr7.3:42842925-42842944 MS.gene96847:CDS 50.0%
! CTTGTTTGCTGAAGCAGGGA+AGG - chr7.3:42842549-42842568 MS.gene96847:intron 50.0%
TGTAACTGTGGGGCAATGCG+AGG + chr7.3:42843564-42843583 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42842472 42844098 42842472 ID=MS.gene96847
chr7.3 mRNA 42842472 42844098 42842472 ID=MS.gene96847.t1;Parent=MS.gene96847
chr7.3 exon 42843469 42844098 42843469 ID=MS.gene96847.t1.exon1;Parent=MS.gene96847.t1
chr7.3 CDS 42843469 42844098 42843469 ID=cds.MS.gene96847.t1;Parent=MS.gene96847.t1
chr7.3 exon 42842653 42843372 42842653 ID=MS.gene96847.t1.exon2;Parent=MS.gene96847.t1
chr7.3 CDS 42842653 42843372 42842653 ID=cds.MS.gene96847.t1;Parent=MS.gene96847.t1
chr7.3 exon 42842472 42842564 42842472 ID=MS.gene96847.t1.exon3;Parent=MS.gene96847.t1
chr7.3 CDS 42842472 42842564 42842472 ID=cds.MS.gene96847.t1;Parent=MS.gene96847.t1
Gene Sequence

>MS.gene96847

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCTGAAGCAGGGAAGGACTTTGTCGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAAGAATCTAACATAGGGCAAGTTACAGTCGGCTGTCTGAACTCTCTTTATCGAAGTGTTGCAGATCTGGAAGAATGTTGTTTCTCTACTGAGATAATCAAGCAAATGCTGCTAATCAACTCATCGGAAGATTATTGTAACGCTCTTAAAATCAACATTGACGACAATCAACCAACGAAGTACTTCACATGTGCCGAATCTAGACGTCGCTCCTATCATGAGATGATCACATCAACAGATAAAGATAAACATAAATGTCCATGTGGTCGTTCTTTTACACTTCCAATTTTCCTTAAACCTCTCCCCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATTGACTATACAAGCTTTAGTCTGTTCACGGAGTTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTAGTTGAATATTGTGATTGTTTATAACTTCTATACAAACACCTCTCTTAATTTTTTGATTGATTATAACTTCTACTGTTTTATACTGCAGGTACTTGATTTGCTAAAGTGTTCTTTGCTTTCCAAGACAACCTTGACAGATTTGTTTTTAGGGAAGAAACCATCCCTCGAGAAATCAAGGTTTATCTTGTGTGATGTTGAAATTAGTGGTAATATCCAAATCAATCTAAAGCTAGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTACGGATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAATGGTTTGTACAACAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTGATCCTCGCATTGCCCCACAGTTACAGTTAAGCAAGCAGATATTACCAATTCTTGATCCTGGTGTTCATGTATATTATGGTGATTTTAAAAGTTCTGCTAACAGTAATAATAATATTATTCATTTTCAAATTTTCAAATCTGTAATAGAATATTGTTATGTTAGGGATTTGGAGAAACTGTATTTATCTAATCTGATGATTCCTGGTGATGGTTATGTCAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTGTAGCATCCTTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGTTTGAAAACTCCTCTTGATGATTTAAAGGAAAAAGTTGTCACCATTGGCATCAAGGAGGTAAAAGCATATAGTAAAATTCTTAATCTATTTTTAATCTTTACATTATTTATAAATATGTTTAGTTTACCTTATTGTCTTGTTGTAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAACATCTGCCCTAACAAATGGTTTGGCTCACATGTTAGCTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene96847.t1

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESNIGQVTVGCLNSLYRSVADLEECCFSTEIIKQMLLINSSEDYCNALKINIDDNQPTKYFTCAESRRRSYHEMITSTDKDKHKCPCGRSFTLPIFLKPLPQGFVNGVATFVITDDLTIKPNCIDYTSFSLFTEFGIKNPSSVKEVVLNVTKEKVLDLLKCSLLSKTTLTDLFLGKKPSLEKSRFILCDVEISGNIQINLKLVIRKSDNKVLYAQGQQDFANLLLSFLTFPLGGIVRIFGGNCSLGSINGLYNSIVDLDENQYLTSSDAKNRLVDPRIAPQLQLSKQILPILDPGVHVYYGDFKSSANSNNNIIHFQIFKSVIEYCYVRDLEKLYLSNLMIPGDGYVKGPAMYFATDDLVVASLTPISALGLLNRLKTPLDDLKEKVVTIGIKECLSILKASLTSTSALTNGLAHMLAEVKEEK