AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037548

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037548.t1 MTR_4g017410 60.124 484 104 8 1 417 1 462 8.41e-177 504
MS.gene037548.t1 MTR_4g017440 57.353 476 141 7 4 417 5 480 4.99e-160 462
MS.gene037548.t1 MTR_4g017610 52.965 489 160 8 1 433 1 475 6.85e-156 450
MS.gene037548.t1 MTR_4g017830 54.209 487 150 11 3 421 2 483 2.47e-153 446
MS.gene037548.t1 MTR_4g017470 59.465 449 149 11 1 417 1 448 1.17e-151 440
MS.gene037548.t1 MTR_4g017550 54.470 481 148 12 27 443 3 476 1.11e-149 434
MS.gene037548.t1 MTR_4g019340 51.753 485 133 10 12 421 37 495 1.68e-139 409
MS.gene037548.t1 MTR_4g019340 30.769 234 117 8 223 423 41 262 6.28e-13 70.9
MS.gene037548.t1 MTR_4g019310 32.394 497 234 13 1 421 1 471 1.19e-64 216
MS.gene037548.t1 MTR_7g066350 31.013 474 222 11 7 420 3 431 5.65e-56 192
MS.gene037548.t1 MTR_7g066350 29.279 222 122 6 220 421 9 215 1.80e-12 69.3
MS.gene037548.t1 MTR_7g058710 30.342 468 260 13 1 416 1 454 1.89e-51 181
MS.gene037548.t1 MTR_7g066570 31.250 480 243 16 1 416 1 457 4.13e-48 174
MS.gene037548.t1 MTR_7g063900 30.998 471 239 16 12 416 9 459 1.69e-47 170
MS.gene037548.t1 MTR_7g066340 28.998 469 238 11 3 416 2 430 4.65e-46 166
MS.gene037548.t1 MTR_7g066430 29.536 474 247 14 14 416 5 462 1.95e-45 165
MS.gene037548.t1 MTR_7g063660 30.217 460 237 14 14 413 10 445 1.09e-44 162
MS.gene037548.t1 MTR_1g041315 29.158 487 214 13 9 416 10 444 1.71e-44 162
MS.gene037548.t1 MTR_7g066260 29.701 468 236 11 6 416 8 439 1.00e-43 160
MS.gene037548.t1 MTR_7g066260 29.439 214 128 6 223 421 18 223 1.15e-12 70.1
MS.gene037548.t1 MTR_7g066400 29.977 437 237 12 14 416 13 414 2.33e-43 158
MS.gene037548.t1 MTR_7g012680 30.901 466 225 15 2 416 3 422 2.61e-42 155
MS.gene037548.t1 MTR_7g066290 36.000 325 155 10 6 281 8 328 2.93e-39 147
MS.gene037548.t1 MTR_7g066290 30.055 183 107 3 9 188 263 427 3.01e-12 68.6
MS.gene037548.t1 MTR_7g066580 29.530 447 241 12 19 416 1 422 5.28e-38 144
MS.gene037548.t1 MTR_7g066360 31.102 463 224 13 6 416 7 426 9.94e-38 143
MS.gene037548.t1 MTR_7g063890 29.701 468 244 15 14 416 28 475 1.04e-36 141
MS.gene037548.t1 MTR_7g066410 28.687 495 255 15 14 421 11 494 1.05e-36 141
MS.gene037548.t1 MTR_7g066410 27.234 235 138 8 221 433 11 234 1.24e-11 67.0
MS.gene037548.t1 MTR_7g063880 27.848 474 251 14 1 417 1 440 2.60e-36 139
MS.gene037548.t1 MTR_7g063920 28.348 448 248 13 1 416 1 407 3.80e-36 138
MS.gene037548.t1 MTR_7g063840 27.350 468 251 15 10 417 7 445 2.59e-35 137
MS.gene037548.t1 MTR_7g062280 28.831 496 245 16 2 421 4 467 7.22e-35 135
MS.gene037548.t1 MTR_7g062300 28.333 480 254 17 2 421 6 455 4.60e-34 133
MS.gene037548.t1 MTR_7g066480 28.194 454 213 12 14 421 17 403 1.92e-33 130
MS.gene037548.t1 MTR_2g029400 28.605 430 238 14 9 416 10 392 2.61e-32 127
MS.gene037548.t1 MTR_7g063820 29.622 476 256 15 1 417 1 456 4.35e-32 128
MS.gene037548.t1 MTR_7g058700 26.185 443 201 12 25 416 531 898 4.57e-31 127
MS.gene037548.t1 MTR_7g058700 28.090 178 110 3 14 188 753 915 2.61e-11 66.2
MS.gene037548.t1 MTR_7g063670 27.778 450 253 13 10 418 12 430 1.06e-30 123
MS.gene037548.t1 MTR_4g019240 60.396 101 36 2 1 101 1 97 3.10e-30 115
MS.gene037548.t1 MTR_7g063830 29.894 378 186 11 1 316 1 361 4.60e-30 121
MS.gene037548.t1 MTR_3g007740 27.009 448 244 13 14 416 10 419 6.83e-30 121
MS.gene037548.t1 MTR_7g066310 27.314 443 192 13 14 416 8 360 1.21e-29 119
MS.gene037548.t1 MTR_7g066490 28.132 455 198 15 14 421 17 389 1.78e-29 119
MS.gene037548.t1 MTR_7g066680 32.184 261 151 6 171 417 37 285 1.69e-25 107
MS.gene037548.t1 MTR_7g066280 28.809 361 202 11 83 416 35 367 1.85e-25 108
MS.gene037548.t1 MTR_7g100420 28.266 421 200 16 13 416 39 374 2.10e-25 107
MS.gene037548.t1 MTR_6g006800 70.833 48 12 1 1 48 1 46 5.15e-14 67.0
MS.gene037548.t1 MTR_1g014060 29.911 224 106 8 22 197 9 229 3.83e-13 71.2
MS.gene037548.t1 MTR_8g445860 28.054 221 128 8 219 420 12 220 1.85e-12 67.4
MS.gene037548.t1 MTR_0150s0010 26.496 234 126 6 215 420 5 220 3.70e-12 66.2
MS.gene037548.t1 MTR_1g115440 27.149 221 133 7 219 420 10 221 8.25e-12 65.5
MS.gene037548.t1 MTR_8g445920 40.299 67 40 0 215 281 5 71 1.16e-11 62.0
MS.gene037548.t1 MTR_8g044890 40.299 67 40 0 215 281 5 71 1.16e-11 62.0
MS.gene037548.t1 MTR_1g115450 40.000 80 40 1 219 290 6 85 1.99e-11 62.0
MS.gene037548.t1 MTR_1g115455 36.782 87 47 1 212 290 1 87 3.13e-11 63.5
MS.gene037548.t1 MTR_0150s0030 34.091 88 49 1 215 293 3 90 6.90e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037548.t1 AT5G01130 27.907 473 235 14 6 421 3 426 9.14e-41 151
MS.gene037548.t1 AT5G01150 26.735 490 253 11 7 421 3 461 1.23e-37 144
MS.gene037548.t1 AT5G01120 26.850 473 277 12 10 420 6 471 4.61e-37 142
MS.gene037548.t1 AT3G09140 26.494 502 253 15 7 421 3 475 4.59e-36 139
MS.gene037548.t1 AT5G43240 26.585 489 254 12 14 420 10 475 1.80e-33 132
MS.gene037548.t1 AT5G43240 26.585 489 254 12 14 420 10 475 1.80e-33 132
MS.gene037548.t1 AT5G43240 26.585 489 254 12 14 420 10 475 1.80e-33 132
MS.gene037548.t1 AT3G09110 28.440 327 165 7 10 281 6 318 9.11e-32 124
MS.gene037548.t1 AT3G09140 25.094 530 253 16 7 421 3 503 2.13e-31 126
MS.gene037548.t1 AT5G01140 27.021 470 231 13 16 421 12 433 9.13e-31 124
MS.gene037548.t1 AT3G09120 27.385 325 162 8 10 274 3 313 1.64e-25 106
MS.gene037548.t1 AT3G09120 27.354 223 130 6 220 421 6 217 8.84e-12 66.2
MS.gene037548.t1 AT5G37320 24.786 468 262 15 20 421 18 461 5.88e-20 92.4
MS.gene037548.t1 AT5G43240 26.048 334 194 9 117 420 21 331 3.24e-19 89.4

Find 102 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAGCCAGCTTATTATTT+TGG 0.124078 4.3:+81972598 MS.gene037548:CDS
TCCTCCCTTTGTATAATAAT+TGG 0.173244 4.3:-81972659 None:intergenic
GTTTGTCCACTAACACTTTC+AGG 0.174169 4.3:-81971403 None:intergenic
TGGCATACAGCCATGGAATT+TGG 0.179175 4.3:+81971815 MS.gene037548:CDS
AGGTGGGTTGTCTTTGTTCT+TGG 0.216712 4.3:-81972257 None:intergenic
ATTCCCTTTACTTGTGTTGT+AGG 0.261930 4.3:+81972985 MS.gene037548:CDS
CGGGTCCATTGTAAAGCTTT+TGG 0.265521 4.3:+81972438 MS.gene037548:CDS
CACCAATAACAGAAGTAAAA+TGG 0.276087 4.3:+81972315 MS.gene037548:CDS
TTGATCATTGTTGCTGTTGA+TGG 0.292170 4.3:-81971528 None:intergenic
TAGTGTGGCTGAAACGTTTC+TGG 0.310990 4.3:+81971863 MS.gene037548:CDS
TTGCAGCTGTTGAAGGAATT+CGG 0.312659 4.3:+81971930 MS.gene037548:CDS
AAGTTACGTGAATCAATTAT+AGG 0.328775 4.3:+81972691 MS.gene037548:CDS
AGCTTTCTTACCATGCCATT+CGG 0.346241 4.3:+81972418 MS.gene037548:CDS
ATTCTGAGGGTCAGTTGAAT+AGG 0.371830 4.3:+81971838 MS.gene037548:CDS
GCCTCTCACAAATACAATCT+TGG 0.374861 4.3:+81972225 MS.gene037548:CDS
TGCAGCTGTTGAAGGAATTC+GGG 0.386713 4.3:+81971931 MS.gene037548:CDS
TCTTGATCCCTCTTTCGCTT+TGG 0.389102 4.3:-81972631 None:intergenic
TGCTGTTGATGGTGGCTAAA+AGG 0.392005 4.3:-81971517 None:intergenic
CAGAAGTAAAATGGATGTTA+AGG 0.394664 4.3:+81972324 MS.gene037548:CDS
CAGAAAACAATTTATAAACT+TGG 0.396019 4.3:-81972945 None:intergenic
GCTTTCTTACCATGCCATTC+GGG 0.404087 4.3:+81972419 MS.gene037548:CDS
TCTAGTGCCATCAAGGATTT+CGG 0.406512 4.3:-81972715 None:intergenic
AAATTCCATGGCTGTATGCC+AGG 0.407093 4.3:-81971813 None:intergenic
GAGAGGCTCGTTAGTGGTTA+AGG 0.413109 4.3:-81972209 None:intergenic
CATCGTCTGAATTGAGGTCT+TGG 0.415737 4.3:-81971613 None:intergenic
GACATACTTGCAGCTGTTGA+AGG 0.421440 4.3:+81971923 MS.gene037548:CDS
GGAATGTTGAAGGGTTGGTT+TGG 0.427066 4.3:-81972568 None:intergenic
CCTCTCACAAATACAATCTT+GGG 0.454373 4.3:+81972226 MS.gene037548:CDS
AAAGCCTACAACACAAGTAA+AGG 0.460855 4.3:-81972989 None:intergenic
GATTCCCCTGAAAGTGTTAG+TGG 0.461151 4.3:+81971397 MS.gene037548:CDS
AAGCCTACAACACAAGTAAA+GGG 0.462906 4.3:-81972988 None:intergenic
ACACATCCAGCAAAAGAGTT+AGG 0.466364 4.3:-81972463 None:intergenic
TATAGGTCCGAAATCCTTGA+TGG 0.468124 4.3:+81972708 MS.gene037548:CDS
GGATTGAGTAACACAGAAAC+GGG 0.473027 4.3:-81972520 None:intergenic
CACGAGGAATGTTGAAGGGT+TGG 0.473876 4.3:-81972573 None:intergenic
TTTGTCCACTAACACTTTCA+GGG 0.476352 4.3:-81971402 None:intergenic
GTTTCTGTGTTACTCAATCC+TGG 0.478867 4.3:+81972523 MS.gene037548:CDS
TGGTTAAGGTATACTTGAGT+AGG 0.482160 4.3:-81972195 None:intergenic
GTACAATAGTGTGAAGAACT+TGG 0.482756 4.3:+81972495 MS.gene037548:CDS
GTTTGGAAAACCAACCTCTA+GGG 0.484257 4.3:-81972551 None:intergenic
TGGTGCCAAGTGGAAGAGAT+AGG 0.487529 4.3:-81971487 None:intergenic
AGCTTCCTATCTCTTCCACT+TGG 0.491188 4.3:+81971482 MS.gene037548:CDS
CGAAACCTTAACTGCACTTG+TGG 0.496385 4.3:+81971783 MS.gene037548:CDS
TTCAGACTTGACTCAAATAG+AGG 0.500328 4.3:+81971956 MS.gene037548:CDS
GGTTTGGAAAACCAACCTCT+AGG 0.502092 4.3:-81972552 None:intergenic
ACTGTTGGTGCAGATTGCTT+AGG 0.504136 4.3:-81972277 None:intergenic
GTTGGTGCAGATTGCTTAGG+TGG 0.508685 4.3:-81972274 None:intergenic
AGGATTGAGTAACACAGAAA+CGG 0.515205 4.3:-81972521 None:intergenic
GACAGGTCAAAAGGTGTTGT+AGG 0.515602 4.3:+81972751 MS.gene037548:CDS
GTCTGAATTGAGGTCTTGGA+TGG 0.519900 4.3:-81971609 None:intergenic
TTCTACACGAGGAATGTTGA+AGG 0.521839 4.3:-81972578 None:intergenic
ATTTGTGAGAGGCTCGTTAG+TGG 0.522997 4.3:-81972215 None:intergenic
TTACTTCTGTTATTGGTGCA+AGG 0.527701 4.3:-81972310 None:intergenic
GCCATGGAATTTGGATTCTG+AGG 0.528284 4.3:+81971824 MS.gene037548:CDS
CCTAAGCCAAAATAATAAGC+TGG 0.530209 4.3:-81972604 None:intergenic
AAGTCCAATTATTATACAAA+GGG 0.533133 4.3:+81972655 MS.gene037548:CDS
CCAACCTCTAGGGGTATACC+AGG 0.537768 4.3:-81972541 None:intergenic
TCTTGGGTCTAGTGCCATCA+AGG 0.537782 4.3:-81972722 None:intergenic
ATCATTGTTGCTGTTGATGG+TGG 0.539275 4.3:-81971525 None:intergenic
TAGGAACGCCAAAGCGAAAG+AGG 0.542595 4.3:+81972623 MS.gene037548:CDS
CCCTCAGAATCCAAATTCCA+TGG 0.542858 4.3:-81971825 None:intergenic
TCCAATTATTATACAAAGGG+AGG 0.543047 4.3:+81972658 MS.gene037548:CDS
ACCAAACATCGTCTGAATTG+AGG 0.548115 4.3:-81971619 None:intergenic
CTTCAAGATCATCAAGAGGA+AGG 0.549012 4.3:-81972870 None:intergenic
ATGGTGATGATTCTGAGAGT+TGG 0.552671 4.3:-81971556 None:intergenic
CAAGTCCAATTATTATACAA+AGG 0.557972 4.3:+81972654 MS.gene037548:CDS
GCATTGGTGAAGCTGAGGTA+AGG 0.566686 4.3:+81972905 MS.gene037548:CDS
AGACGCGAATAAACAGAAAG+TGG 0.569116 4.3:-81972826 None:intergenic
AATTCCATGGCTGTATGCCA+GGG 0.570531 4.3:-81971812 None:intergenic
CCATGGAATTTGGATTCTGA+GGG 0.571821 4.3:+81971825 MS.gene037548:CDS
CCCAAGATTGTATTTGTGAG+AGG 0.572271 4.3:-81972226 None:intergenic
CAAGGCATTACTCCAACTGT+TGG 0.575256 4.3:-81972292 None:intergenic
GAAGTCAACAAAATCTCCGT+TGG 0.575489 4.3:-81972389 None:intergenic
AAGCAATCTGCACCAACAGT+TGG 0.576657 4.3:+81972280 MS.gene037548:CDS
TTGGTGCAGATTGCTTAGGT+GGG 0.579593 4.3:-81972273 None:intergenic
CCTGGTATACCCCTAGAGGT+TGG 0.584272 4.3:+81972541 MS.gene037548:CDS
TTGTCCACTAACACTTTCAG+GGG 0.591923 4.3:-81971401 None:intergenic
GAGGAAATCACACACAACAT+TGG 0.597623 4.3:+81971975 MS.gene037548:CDS
AGGTCCCAAAAGCTTTACAA+TGG 0.609484 4.3:-81972443 None:intergenic
TACAATGGACCCGAATGGCA+TGG 0.610188 4.3:-81972428 None:intergenic
ATGATCTTTGTAGAAGCCAA+CGG 0.617543 4.3:+81972373 MS.gene037548:CDS
AAGTGTTAGTGGACAAACAA+AGG 0.621379 4.3:+81971408 MS.gene037548:CDS
TTCACTTCAAGATCATCAAG+AGG 0.622399 4.3:-81972874 None:intergenic
TTTGGAAAACCAACCTCTAG+GGG 0.622428 4.3:-81972550 None:intergenic
GATAAGCATTGGTGAAGCTG+AGG 0.623006 4.3:+81972900 MS.gene037548:CDS
GGTCTTGGATGGTTTCGTAG+AGG 0.631330 4.3:-81971598 None:intergenic
AGGAACGCCAAAGCGAAAGA+GGG 0.635468 4.3:+81972624 MS.gene037548:CDS
ACACAACATTGGCAAGCAAG+AGG 0.636713 4.3:+81971986 MS.gene037548:CDS
TTGTTCGTGTTGAGAAGCCA+TGG 0.638508 4.3:-81971357 None:intergenic
TCTACACGAGGAATGTTGAA+GGG 0.646068 4.3:-81972577 None:intergenic
AGCTTTACAATGGACCCGAA+TGG 0.646881 4.3:-81972433 None:intergenic
AAGTATGTCTCATACGAACA+AGG 0.653818 4.3:-81971909 None:intergenic
ATTCCATGGCTGTATGCCAG+GGG 0.663395 4.3:-81971811 None:intergenic
CAATCCTGGTATACCCCTAG+AGG 0.663504 4.3:+81972537 MS.gene037548:CDS
TCAGTTGAATAGGACTAGTG+TGG 0.666324 4.3:+81971848 MS.gene037548:CDS
GGTGGCTAAAAGGCGGACAA+TGG 0.668124 4.3:-81971507 None:intergenic
GAAGTGAAGATGATAAGCAT+TGG 0.669635 4.3:+81972889 MS.gene037548:CDS
TTCCATGGCTGTATGCCAGG+GGG 0.683468 4.3:-81971810 None:intergenic
ACAAGTAAAGGGAATCCAAG+AGG 0.684150 4.3:-81972977 None:intergenic
AGGCGGACAATGGTGCCAAG+TGG 0.686421 4.3:-81971497 None:intergenic
TAAGCTGGCTGTTCTACACG+AGG 0.728528 4.3:-81972589 None:intergenic
TGTTGATGGTGGCTAAAAGG+CGG 0.769976 4.3:-81971514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTCCAATTATTATACAAA+GGG + chr4.3:81972655-81972674 MS.gene037548:CDS 20.0%
!! CAGAAAACAATTTATAAACT+TGG - chr4.3:81972948-81972967 None:intergenic 20.0%
!! CATTAAGAATTGAAATTGAT+TGG - chr4.3:81972105-81972124 None:intergenic 20.0%
! AAGTTACGTGAATCAATTAT+AGG + chr4.3:81972691-81972710 MS.gene037548:CDS 25.0%
! CAAGTCCAATTATTATACAA+AGG + chr4.3:81972654-81972673 MS.gene037548:CDS 25.0%
! GTTTCGAAAAATAGTAAACT+TGG - chr4.3:81971769-81971788 None:intergenic 25.0%
! TCAATATCTATACATCAGAA+AGG - chr4.3:81972174-81972193 None:intergenic 25.0%
!! ATCCATTTTACTTCTGTTAT+TGG - chr4.3:81972320-81972339 None:intergenic 25.0%
!!! AAAAATGGATTATATGCTGT+TGG + chr4.3:81972784-81972803 MS.gene037548:CDS 25.0%
!!! TTTCTGTTATTTTAACCTCT+TGG + chr4.3:81972962-81972981 MS.gene037548:CDS 25.0%
!!! TTTTTGATGTTTTCAAGGAA+TGG - chr4.3:81971578-81971597 None:intergenic 25.0%
AGAATTGAAATTGATTGGAC+AGG - chr4.3:81972100-81972119 None:intergenic 30.0%
CACCAATAACAGAAGTAAAA+TGG + chr4.3:81972315-81972334 MS.gene037548:CDS 30.0%
CAGAAGTAAAATGGATGTTA+AGG + chr4.3:81972324-81972343 MS.gene037548:CDS 30.0%
GTAAAAAAATGTGACGACAA+AGG - chr4.3:81972030-81972049 None:intergenic 30.0%
GTAGGATTTGTGAAGAAAAA+TGG + chr4.3:81972769-81972788 MS.gene037548:CDS 30.0%
TCCAATTATTATACAAAGGG+AGG + chr4.3:81972658-81972677 MS.gene037548:CDS 30.0%
TCCTCCCTTTGTATAATAAT+TGG - chr4.3:81972662-81972681 None:intergenic 30.0%
TTGGACAGGTTAAAACAATA+AGG - chr4.3:81972086-81972105 None:intergenic 30.0%
! AGAGGTTTTTGATGTTTTCA+AGG - chr4.3:81971583-81971602 None:intergenic 30.0%
!!! AAGGAACAAAGTTGTTTTTG+TGG + chr4.3:81971427-81971446 MS.gene037548:CDS 30.0%
AAAGCCTACAACACAAGTAA+AGG - chr4.3:81972992-81973011 None:intergenic 35.0%
AAGCCTACAACACAAGTAAA+GGG - chr4.3:81972991-81973010 None:intergenic 35.0%
AAGTATGTCTCATACGAACA+AGG - chr4.3:81971912-81971931 None:intergenic 35.0%
AGGATTGAGTAACACAGAAA+CGG - chr4.3:81972524-81972543 None:intergenic 35.0%
AGTAAGTCACATGGATTTCT+TGG - chr4.3:81971677-81971696 None:intergenic 35.0%
ATGATCTTTGTAGAAGCCAA+CGG + chr4.3:81972373-81972392 MS.gene037548:CDS 35.0%
ATTCCCTTTACTTGTGTTGT+AGG + chr4.3:81972985-81973004 MS.gene037548:CDS 35.0%
CCTAAGCCAAAATAATAAGC+TGG - chr4.3:81972607-81972626 None:intergenic 35.0%
CCTCTCACAAATACAATCTT+GGG + chr4.3:81972226-81972245 MS.gene037548:CDS 35.0%
GAAGTGAAGATGATAAGCAT+TGG + chr4.3:81972889-81972908 MS.gene037548:CDS 35.0%
GTACAATAGTGTGAAGAACT+TGG + chr4.3:81972495-81972514 MS.gene037548:CDS 35.0%
GTGAAGCTTCATGATTAAGA+CGG - chr4.3:81972064-81972083 None:intergenic 35.0%
TGAAGCTTCATGATTAAGAC+GGG - chr4.3:81972063-81972082 None:intergenic 35.0%
TGGTTAAGGTATACTTGAGT+AGG - chr4.3:81972198-81972217 None:intergenic 35.0%
TTACTTCTGTTATTGGTGCA+AGG - chr4.3:81972313-81972332 None:intergenic 35.0%
TTCACTTCAAGATCATCAAG+AGG - chr4.3:81972877-81972896 None:intergenic 35.0%
TTCAGACTTGACTCAAATAG+AGG + chr4.3:81971956-81971975 MS.gene037548:CDS 35.0%
TTTGTCCACTAACACTTTCA+GGG - chr4.3:81971405-81971424 None:intergenic 35.0%
! AAGTGTTAGTGGACAAACAA+AGG + chr4.3:81971408-81971427 MS.gene037548:CDS 35.0%
! GAACAGCCAGCTTATTATTT+TGG + chr4.3:81972598-81972617 MS.gene037548:CDS 35.0%
! TTGATCATTGTTGCTGTTGA+TGG - chr4.3:81971531-81971550 None:intergenic 35.0%
!! TGTTTTTGTGGAAGCAACAA+AGG + chr4.3:81971439-81971458 MS.gene037548:CDS 35.0%
!!! CCAGCTTATTATTTTGGCTT+AGG + chr4.3:81972604-81972623 MS.gene037548:CDS 35.0%
AAAATGTGACGACAAAGGAG+AGG - chr4.3:81972025-81972044 None:intergenic 40.0%
AAATGTGACGACAAAGGAGA+GGG - chr4.3:81972024-81972043 None:intergenic 40.0%
ACAAGTAAAGGGAATCCAAG+AGG - chr4.3:81972980-81972999 None:intergenic 40.0%
ACACATCCAGCAAAAGAGTT+AGG - chr4.3:81972466-81972485 None:intergenic 40.0%
ACCAAACATCGTCTGAATTG+AGG - chr4.3:81971622-81971641 None:intergenic 40.0%
ACCTCAATTCAGACGATGTT+TGG + chr4.3:81971618-81971637 MS.gene037548:intron 40.0%
AGACGCGAATAAACAGAAAG+TGG - chr4.3:81972829-81972848 None:intergenic 40.0%
AGCTTTCTTACCATGCCATT+CGG + chr4.3:81972418-81972437 MS.gene037548:CDS 40.0%
AGGTCCCAAAAGCTTTACAA+TGG - chr4.3:81972446-81972465 None:intergenic 40.0%
CCATGGAATTTGGATTCTGA+GGG + chr4.3:81971825-81971844 MS.gene037548:CDS 40.0%
CCCAAGATTGTATTTGTGAG+AGG - chr4.3:81972229-81972248 None:intergenic 40.0%
CTTCAAGATCATCAAGAGGA+AGG - chr4.3:81972873-81972892 None:intergenic 40.0%
GAAGTCAACAAAATCTCCGT+TGG - chr4.3:81972392-81972411 None:intergenic 40.0%
GAGGAAATCACACACAACAT+TGG + chr4.3:81971975-81971994 MS.gene037548:CDS 40.0%
GCCTCTCACAAATACAATCT+TGG + chr4.3:81972225-81972244 MS.gene037548:CDS 40.0%
GGATTGAGTAACACAGAAAC+GGG - chr4.3:81972523-81972542 None:intergenic 40.0%
GTTTGGAAAACCAACCTCTA+GGG - chr4.3:81972554-81972573 None:intergenic 40.0%
GTTTGTCCACTAACACTTTC+AGG - chr4.3:81971406-81971425 None:intergenic 40.0%
TATAGGTCCGAAATCCTTGA+TGG + chr4.3:81972708-81972727 MS.gene037548:CDS 40.0%
TCTACACGAGGAATGTTGAA+GGG - chr4.3:81972580-81972599 None:intergenic 40.0%
TCTAGTGCCATCAAGGATTT+CGG - chr4.3:81972718-81972737 None:intergenic 40.0%
TTCATGCACAGTAAGTCACA+TGG - chr4.3:81971686-81971705 None:intergenic 40.0%
TTCTACACGAGGAATGTTGA+AGG - chr4.3:81972581-81972600 None:intergenic 40.0%
TTGCAGCTGTTGAAGGAATT+CGG + chr4.3:81971930-81971949 MS.gene037548:CDS 40.0%
TTGTCCACTAACACTTTCAG+GGG - chr4.3:81971404-81971423 None:intergenic 40.0%
TTTGGAAAACCAACCTCTAG+GGG - chr4.3:81972553-81972572 None:intergenic 40.0%
! AACTCTTTTGCTGGATGTGT+TGG + chr4.3:81972466-81972485 MS.gene037548:CDS 40.0%
! ATCATTGTTGCTGTTGATGG+TGG - chr4.3:81971528-81971547 None:intergenic 40.0%
! ATGGTGATGATTCTGAGAGT+TGG - chr4.3:81971559-81971578 None:intergenic 40.0%
! ATTCTGAGGGTCAGTTGAAT+AGG + chr4.3:81971838-81971857 MS.gene037548:CDS 40.0%
! GGGTCCATTGTAAAGCTTTT+GGG + chr4.3:81972439-81972458 MS.gene037548:CDS 40.0%
! GTTTCTGTGTTACTCAATCC+TGG + chr4.3:81972523-81972542 MS.gene037548:CDS 40.0%
! GTTTTCCACAAGTGCAGTTA+AGG - chr4.3:81971791-81971810 None:intergenic 40.0%
! TACAACACCTTTTGACCTGT+CGG - chr4.3:81972752-81972771 None:intergenic 40.0%
! TCAGTTGAATAGGACTAGTG+TGG + chr4.3:81971848-81971867 MS.gene037548:CDS 40.0%
AAATTCCATGGCTGTATGCC+AGG - chr4.3:81971816-81971835 None:intergenic 45.0%
AAGCAATCTGCACCAACAGT+TGG + chr4.3:81972280-81972299 MS.gene037548:CDS 45.0%
AATTCCATGGCTGTATGCCA+GGG - chr4.3:81971815-81971834 None:intergenic 45.0%
ACACAACATTGGCAAGCAAG+AGG + chr4.3:81971986-81972005 MS.gene037548:CDS 45.0%
ACTGTTGGTGCAGATTGCTT+AGG - chr4.3:81972280-81972299 None:intergenic 45.0%
AGCTTCCTATCTCTTCCACT+TGG + chr4.3:81971482-81971501 MS.gene037548:CDS 45.0%
AGCTTTACAATGGACCCGAA+TGG - chr4.3:81972436-81972455 None:intergenic 45.0%
ATTTGTGAGAGGCTCGTTAG+TGG - chr4.3:81972218-81972237 None:intergenic 45.0%
CATCGTCTGAATTGAGGTCT+TGG - chr4.3:81971616-81971635 None:intergenic 45.0%
CCCTCAGAATCCAAATTCCA+TGG - chr4.3:81971828-81971847 None:intergenic 45.0%
CGAAACCTTAACTGCACTTG+TGG + chr4.3:81971783-81971802 MS.gene037548:CDS 45.0%
GACATACTTGCAGCTGTTGA+AGG + chr4.3:81971923-81971942 MS.gene037548:CDS 45.0%
GCCATGGAATTTGGATTCTG+AGG + chr4.3:81971824-81971843 MS.gene037548:CDS 45.0%
GCTTTCTTACCATGCCATTC+GGG + chr4.3:81972419-81972438 MS.gene037548:CDS 45.0%
GGTTTGGAAAACCAACCTCT+AGG - chr4.3:81972555-81972574 None:intergenic 45.0%
GTCTGAATTGAGGTCTTGGA+TGG - chr4.3:81971612-81971631 None:intergenic 45.0%
TAGTGTGGCTGAAACGTTTC+TGG + chr4.3:81971863-81971882 MS.gene037548:CDS 45.0%
TCTTGATCCCTCTTTCGCTT+TGG - chr4.3:81972634-81972653 None:intergenic 45.0%
TGCAGCTGTTGAAGGAATTC+GGG + chr4.3:81971931-81971950 MS.gene037548:CDS 45.0%
TGGCATACAGCCATGGAATT+TGG + chr4.3:81971815-81971834 MS.gene037548:CDS 45.0%
TTGGTGCAGATTGCTTAGGT+GGG - chr4.3:81972276-81972295 None:intergenic 45.0%
! ACAACACCTTTTGACCTGTC+GGG - chr4.3:81972751-81972770 None:intergenic 45.0%
! CAAGGCATTACTCCAACTGT+TGG - chr4.3:81972295-81972314 None:intergenic 45.0%
! CGGGTCCATTGTAAAGCTTT+TGG + chr4.3:81972438-81972457 MS.gene037548:CDS 45.0%
! TTGGGACCTAACTCTTTTGC+TGG + chr4.3:81972457-81972476 MS.gene037548:CDS 45.0%
!! AGGTGGGTTGTCTTTGTTCT+TGG - chr4.3:81972260-81972279 None:intergenic 45.0%
!! GACAGGTCAAAAGGTGTTGT+AGG + chr4.3:81972751-81972770 MS.gene037548:CDS 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG + chr4.3:81972900-81972919 MS.gene037548:CDS 45.0%
!! GATTCCCCTGAAAGTGTTAG+TGG + chr4.3:81971397-81971416 MS.gene037548:CDS 45.0%
!! GGAATGTTGAAGGGTTGGTT+TGG - chr4.3:81972571-81972590 None:intergenic 45.0%
!! TGCTGTTGATGGTGGCTAAA+AGG - chr4.3:81971520-81971539 None:intergenic 45.0%
!! TGTTGATGGTGGCTAAAAGG+CGG - chr4.3:81971517-81971536 None:intergenic 45.0%
AGGAACGCCAAAGCGAAAGA+GGG + chr4.3:81972624-81972643 MS.gene037548:CDS 50.0%
ATTCCATGGCTGTATGCCAG+GGG - chr4.3:81971814-81971833 None:intergenic 50.0%
CAATCCTGGTATACCCCTAG+AGG + chr4.3:81972537-81972556 MS.gene037548:CDS 50.0%
CACGAGGAATGTTGAAGGGT+TGG - chr4.3:81972576-81972595 None:intergenic 50.0%
GAGAGGCTCGTTAGTGGTTA+AGG - chr4.3:81972212-81972231 None:intergenic 50.0%
GGTCTTGGATGGTTTCGTAG+AGG - chr4.3:81971601-81971620 None:intergenic 50.0%
GTTGGTGCAGATTGCTTAGG+TGG - chr4.3:81972277-81972296 None:intergenic 50.0%
TAAGCTGGCTGTTCTACACG+AGG - chr4.3:81972592-81972611 None:intergenic 50.0%
TACAATGGACCCGAATGGCA+TGG - chr4.3:81972431-81972450 None:intergenic 50.0%
TAGGAACGCCAAAGCGAAAG+AGG + chr4.3:81972623-81972642 MS.gene037548:CDS 50.0%
TCTTGGGTCTAGTGCCATCA+AGG - chr4.3:81972725-81972744 None:intergenic 50.0%
! AACACCTTTTGACCTGTCGG+GGG - chr4.3:81972749-81972768 None:intergenic 50.0%
! CAACACCTTTTGACCTGTCG+GGG - chr4.3:81972750-81972769 None:intergenic 50.0%
! GCATTGGTGAAGCTGAGGTA+AGG + chr4.3:81972905-81972924 MS.gene037548:CDS 50.0%
! TGGTGCCAAGTGGAAGAGAT+AGG - chr4.3:81971490-81971509 None:intergenic 50.0%
AGATCCCCCGACAGGTCAAA+AGG + chr4.3:81972742-81972761 MS.gene037548:CDS 55.0%
CCTGGTATACCCCTAGAGGT+TGG + chr4.3:81972541-81972560 MS.gene037548:CDS 55.0%
GGTGGCTAAAAGGCGGACAA+TGG - chr4.3:81971510-81971529 None:intergenic 55.0%
TGCACTTGTGGAAAACCCCC+TGG + chr4.3:81971795-81971814 MS.gene037548:CDS 55.0%
TTCCATGGCTGTATGCCAGG+GGG - chr4.3:81971813-81971832 None:intergenic 55.0%
TTGACCTGTCGGGGGATCTT+GGG - chr4.3:81972741-81972760 None:intergenic 55.0%
TTTGACCTGTCGGGGGATCT+TGG - chr4.3:81972742-81972761 None:intergenic 55.0%
! CCAACCTCTAGGGGTATACC+AGG - chr4.3:81972544-81972563 None:intergenic 55.0%
AACCCCCTGGCATACAGCCA+TGG + chr4.3:81971808-81971827 MS.gene037548:CDS 60.0%
TAGACCCAAGATCCCCCGAC+AGG + chr4.3:81972734-81972753 MS.gene037548:CDS 60.0%
! AGGCGGACAATGGTGCCAAG+TGG - chr4.3:81971500-81971519 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 81971359 81973023 81971359 ID=MS.gene037548
chr4.3 mRNA 81971359 81973023 81971359 ID=MS.gene037548.t1;Parent=MS.gene037548
chr4.3 exon 81971359 81971634 81971359 ID=MS.gene037548.t1.exon1;Parent=MS.gene037548.t1
chr4.3 CDS 81971359 81971634 81971359 ID=cds.MS.gene037548.t1;Parent=MS.gene037548.t1
chr4.3 exon 81971771 81972007 81971771 ID=MS.gene037548.t1.exon2;Parent=MS.gene037548.t1
chr4.3 CDS 81971771 81972007 81971771 ID=cds.MS.gene037548.t1;Parent=MS.gene037548.t1
chr4.3 exon 81972187 81973023 81972187 ID=MS.gene037548.t1.exon3;Parent=MS.gene037548.t1
chr4.3 CDS 81972187 81973023 81972187 ID=cds.MS.gene037548.t1;Parent=MS.gene037548.t1
Gene Sequence

>MS.gene037548

ATGGCTTCTCAACACGAACAACATGAAGAGTCAAAAACGATTCCCCTGAAAGTGTTAGTGGACAAACAAAGGAACAAAGTTGTTTTTGTGGAAGCAACAAAGGACTTTGTTGACACTCTCTTCAGCTTCCTATCTCTTCCACTTGGCACCATTGTCCGCCTTTTAGCCACCATCAACAGCAACAATGATCAACAAAACCAACTCTCAGAATCATCACCATTCCTTGAAAACATCAAAAACCTCTACGAAACCATCCAAGACCTCAATTCAGACGATGTTTGGTACAACTCTTTCTGCAAACATATGTTGTTGCATCCAAGAAATCCATGTGACTTACTGTGCATGAAGTTGTTCTTGAATATTGATGATACTGATACATCAAATAAATTTTGTGTGTCATGCTTGTTCCAAGTTTACTATTTTTCGAAACCTTAACTGCACTTGTGGAAAACCCCCTGGCATACAGCCATGGAATTTGGATTCTGAGGGTCAGTTGAATAGGACTAGTGTGGCTGAAACGTTTCTGGTGTCTGATGATTTGAAGATTGTGCCTTGTTCGTATGAGACATACTTGCAGCTGTTGAAGGAATTCGGGTATTCAGACTTGACTCAAATAGAGGAAATCACACACAACATTGGCAAGCAAGAGGTAACTACTTATGCCCTCTCCTTTGTCGTCACATTTTTTTACTTTTTTTATACCCGTCTTAATCATGAAGCTTCACCTTATTGTTTTAACCTGTCCAATCAATTTCAATTCTTAATGTTGTGATTTATTGCTTCATTTTTTTTTAAGAAGAAATTGATCACTTCCTTTCTGATGTATAGATATTGAACCTACTCAAGTATACCTTAACCACTAACGAGCCTCTCACAAATACAATCTTGGGATGTAGCTCCAAGAACAAAGACAACCCACCTAAGCAATCTGCACCAACAGTTGGAGTAATGCCTTGCACCAATAACAGAAGTAAAATGGATGTTAAGGTAGTGCAAAGTAAATCTCAGAAAAAGATGATCTTTGTAGAAGCCAACGGAGATTTTGTTGACTTCATTTTTAGCTTTCTTACCATGCCATTCGGGTCCATTGTAAAGCTTTTGGGACCTAACTCTTTTGCTGGATGTGTTGGTAATTTGTACAATAGTGTGAAGAACTTGGATCCCGTTTCTGTGTTACTCAATCCTGGTATACCCCTAGAGGTTGGTTTTCCAAACCAACCCTTCAACATTCCTCGTGTAGAACAGCCAGCTTATTATTTTGGCTTAGGAACGCCAAAGCGAAAGAGGGATCAAGACAAGTCCAATTATTATACAAAGGGAGGAGTGATTTCTAAGTTACGTGAATCAATTATAGGTCCGAAATCCTTGATGGCACTAGACCCAAGATCCCCCGACAGGTCAAAAGGTGTTGTAGGATTTGTGAAGAAAAATGGATTATATGCTGTTGGAGATGATCTAAAAGTAAAACCACTTTCTGTTTATTCGCGTCTTTCATATTTGAAAGAGTTAAGCCTTCCTCTTGATGATCTTGAAGTGAAGATGATAAGCATTGGTGAAGCTGAGGTAAGGTTGCTATTATTTTACGACCAAGTTTATAAATTGTTTTCTGTTATTTTAACCTCTTGGATTCCCTTTACTTGTGTTGTAGGCTTTGAGATTCCTTGA
Protein sequence

>MS.gene037548.t1

MASQHEQHEESKTIPLKVLVDKQRNKVVFVEATKDFVDTLFSFLSLPLGTIVRLLATINSNNDQQNQLSESSPFLENIKNLYETIQDLNSDDFTIFRNLNCTCGKPPGIQPWNLDSEGQLNRTSVAETFLVSDDLKIVPCSYETYLQLLKEFGYSDLTQIEEITHNIGKQEILNLLKYTLTTNEPLTNTILGCSSKNKDNPPKQSAPTVGVMPCTNNRSKMDVKVVQSKSQKKMIFVEANGDFVDFIFSFLTMPFGSIVKLLGPNSFAGCVGNLYNSVKNLDPVSVLLNPGIPLEVGFPNQPFNIPRVEQPAYYFGLGTPKRKRDQDKSNYYTKGGVISKLRESIIGPKSLMALDPRSPDRSKGVVGFVKKNGLYAVGDDLKVKPLSVYSRLSYLKELSLPLDDLEVKMISIGEAEVRLLLFYDQVYKLFSVILTSWIPFTCVVGFEIP