AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84623

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84623.t1 MTR_7g066430 84.168 499 78 1 1 499 1 498 0.0 856
MS.gene84623.t1 MTR_7g066410 52.277 505 217 5 4 486 10 512 9.06e-173 497
MS.gene84623.t1 MTR_7g066570 47.782 496 228 10 5 492 15 487 4.43e-138 410
MS.gene84623.t1 MTR_7g058710 41.818 495 247 10 4 486 12 477 1.73e-123 370
MS.gene84623.t1 MTR_7g012680 44.581 489 219 9 4 491 14 451 8.63e-123 367
MS.gene84623.t1 MTR_7g066260 42.213 488 237 10 4 486 15 462 5.17e-116 351
MS.gene84623.t1 MTR_7g066260 27.586 232 154 5 255 480 12 235 1.99e-16 82.4
MS.gene84623.t1 MTR_7g066340 42.363 491 226 13 4 486 12 453 8.72e-112 340
MS.gene84623.t1 MTR_1g041315 41.164 481 226 11 4 470 14 451 1.49e-109 335
MS.gene84623.t1 MTR_1g041315 26.033 242 148 8 258 480 14 243 1.30e-11 67.0
MS.gene84623.t1 MTR_7g066580 40.763 498 231 12 10 493 1 448 2.55e-109 332
MS.gene84623.t1 MTR_7g066350 41.529 484 233 11 4 483 9 446 4.32e-108 330
MS.gene84623.t1 MTR_7g062280 40.079 504 253 9 4 486 10 485 1.90e-105 324
MS.gene84623.t1 MTR_7g062300 39.344 488 259 8 4 483 12 470 2.20e-100 310
MS.gene84623.t1 MTR_7g063660 38.446 489 269 8 4 486 9 471 2.87e-98 305
MS.gene84623.t1 MTR_7g066400 38.367 490 227 11 2 482 10 433 1.84e-97 302
MS.gene84623.t1 MTR_7g066360 39.431 492 243 11 2 489 12 452 2.43e-97 303
MS.gene84623.t1 MTR_7g063900 40.733 491 265 9 4 486 10 482 2.63e-96 300
MS.gene84623.t1 MTR_7g066290 39.796 490 217 11 4 486 15 433 2.05e-95 296
MS.gene84623.t1 MTR_7g063880 37.782 487 264 11 4 486 11 462 8.64e-91 285
MS.gene84623.t1 MTR_7g063840 37.243 486 272 11 5 486 11 467 7.50e-90 283
MS.gene84623.t1 MTR_7g063840 27.966 236 148 10 252 480 4 224 5.57e-13 71.2
MS.gene84623.t1 MTR_7g063820 38.211 492 281 9 5 491 11 484 1.08e-89 283
MS.gene84623.t1 MTR_7g058700 38.477 499 190 11 16 499 531 927 1.11e-89 294
MS.gene84623.t1 MTR_7g066480 49.422 346 143 9 4 336 16 342 3.69e-89 280
MS.gene84623.t1 MTR_7g066480 62.651 83 31 0 412 494 347 429 1.63e-24 106
MS.gene84623.t1 MTR_7g063830 37.959 490 244 12 5 491 11 443 3.46e-85 270
MS.gene84623.t1 MTR_7g066490 46.588 337 154 7 3 336 15 328 1.44e-84 268
MS.gene84623.t1 MTR_7g066490 61.446 83 32 0 412 494 333 415 1.18e-23 103
MS.gene84623.t1 MTR_2g029400 37.131 474 213 10 4 475 14 404 8.59e-84 265
MS.gene84623.t1 MTR_4g019310 37.022 497 277 13 4 482 8 486 1.06e-83 268
MS.gene84623.t1 MTR_3g007740 37.577 487 247 12 4 486 9 442 1.76e-83 266
MS.gene84623.t1 MTR_7g063920 35.611 483 248 5 4 486 11 430 1.06e-82 263
MS.gene84623.t1 MTR_7g063890 38.477 499 264 12 4 486 27 498 7.05e-78 253
MS.gene84623.t1 MTR_7g063890 28.696 230 145 6 257 480 26 242 5.44e-19 90.1
MS.gene84623.t1 MTR_7g063670 37.832 489 244 9 5 486 16 451 6.03e-77 249
MS.gene84623.t1 MTR_3g065200 34.183 471 244 12 3 472 2 407 4.24e-75 244
MS.gene84623.t1 MTR_4g019340 34.615 494 268 12 5 474 39 501 1.46e-67 226
MS.gene84623.t1 MTR_4g019340 27.200 250 146 7 257 482 37 274 5.46e-11 65.1
MS.gene84623.t1 MTR_4g017440 32.411 506 304 14 5 488 15 504 1.39e-66 223
MS.gene84623.t1 MTR_4g017830 33.858 508 295 15 5 488 13 503 2.79e-66 223
MS.gene84623.t1 MTR_4g017830 27.801 241 150 6 255 482 9 238 6.92e-14 74.3
MS.gene84623.t1 MTR_7g066680 42.857 308 133 6 208 482 37 334 7.40e-64 211
MS.gene84623.t1 MTR_4g017610 32.530 498 278 17 7 483 16 476 2.31e-62 211
MS.gene84623.t1 MTR_4g017610 28.049 246 149 6 253 482 8 241 6.38e-16 80.5
MS.gene84623.t1 MTR_4g017410 30.912 537 289 15 1 496 1 496 1.34e-59 205
MS.gene84623.t1 MTR_4g017470 31.274 518 282 11 5 496 13 482 1.65e-55 193
MS.gene84623.t1 MTR_7g066280 33.790 438 208 15 83 486 1 390 3.17e-54 188
MS.gene84623.t1 MTR_4g017550 32.454 493 279 18 18 482 3 469 1.96e-52 185
MS.gene84623.t1 MTR_1g014060 43.128 211 116 3 13 223 9 215 1.44e-50 177
MS.gene84623.t1 MTR_1g014060 43.415 205 91 4 288 491 210 390 2.08e-37 142
MS.gene84623.t1 MTR_1g014060 29.858 211 131 5 267 471 9 208 2.54e-16 81.3
MS.gene84623.t1 MTR_7g066310 40.157 254 101 4 246 486 168 383 4.77e-47 169
MS.gene84623.t1 MTR_7g066310 46.809 141 73 2 4 143 7 146 1.00e-34 135
MS.gene84623.t1 MTR_7g063720 39.394 231 99 4 261 483 26 223 2.29e-41 149
MS.gene84623.t1 MTR_7g063720 28.261 230 129 7 2 225 21 220 2.07e-16 79.3
MS.gene84623.t1 MTR_7g100420 37.386 329 172 9 159 482 94 393 1.55e-39 148
MS.gene84623.t1 MTR_7g063850 35.294 272 147 9 238 504 46 293 6.40e-36 135
MS.gene84623.t1 MTR_7g062270 40.116 172 99 1 5 176 11 178 3.07e-35 136
MS.gene84623.t1 MTR_8g023240 26.800 500 284 19 5 478 38 481 1.70e-30 125
MS.gene84623.t1 MTR_8g445860 30.901 233 136 7 258 479 13 231 5.66e-20 89.4
MS.gene84623.t1 MTR_8g445860 28.395 243 149 7 2 233 11 239 8.99e-17 80.1
MS.gene84623.t1 MTR_7g066390 52.055 73 35 0 414 486 50 122 1.95e-17 80.1
MS.gene84623.t1 MTR_7g063690 37.086 151 86 3 135 285 81 222 3.56e-17 81.6
MS.gene84623.t1 MTR_7g063690 62.500 48 18 0 5 52 13 60 1.26e-11 65.1
MS.gene84623.t1 MTR_4g019240 44.330 97 46 2 5 93 14 110 3.93e-16 77.0
MS.gene84623.t1 MTR_1g115440 29.046 241 144 8 4 230 11 238 2.05e-14 73.2
MS.gene84623.t1 MTR_0150s0010 26.721 247 142 6 4 230 10 237 3.40e-14 72.8
MS.gene84623.t1 MTR_1g115455 27.668 253 137 9 2 233 7 234 3.64e-13 69.7
MS.gene84623.t1 MTR_2g067310 31.447 159 66 4 15 173 58 173 6.13e-13 68.9
MS.gene84623.t1 MTR_7g063760 52.239 67 31 1 421 486 1 67 1.37e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84623.t1 AT5G01140 32.172 488 275 14 4 483 9 448 1.49e-60 206
MS.gene84623.t1 AT5G01120 33.534 498 289 12 5 482 10 485 9.40e-60 205
MS.gene84623.t1 AT5G43240 30.784 510 291 13 5 482 10 489 6.23e-59 203
MS.gene84623.t1 AT5G43240 30.784 510 291 13 5 482 10 489 6.23e-59 203
MS.gene84623.t1 AT5G43240 30.784 510 291 13 5 482 10 489 6.23e-59 203
MS.gene84623.t1 AT3G09140 31.226 522 301 15 2 492 7 501 9.90e-58 200
MS.gene84623.t1 AT3G09140 25.000 240 165 6 255 480 6 244 2.98e-12 69.3
MS.gene84623.t1 AT5G01150 30.426 516 321 11 4 505 9 500 2.31e-57 199
MS.gene84623.t1 AT5G01150 25.564 266 165 8 254 499 5 257 3.88e-11 65.9
MS.gene84623.t1 AT3G09140 29.872 549 301 15 2 492 7 529 3.08e-55 194
MS.gene84623.t1 AT3G09140 25.000 224 151 6 255 463 6 227 5.76e-11 65.5
MS.gene84623.t1 AT3G09110 34.708 291 182 5 4 293 9 292 3.02e-49 173
MS.gene84623.t1 AT3G09120 34.688 320 190 8 2 312 4 313 4.54e-49 171
MS.gene84623.t1 AT3G09120 24.786 234 161 4 255 480 3 229 9.31e-13 69.7
MS.gene84623.t1 AT5G01130 30.658 486 276 13 4 482 9 440 8.62e-47 169
MS.gene84623.t1 AT5G37320 29.264 516 299 12 3 491 8 484 6.07e-45 165
MS.gene84623.t1 AT5G43240 27.666 347 198 10 160 482 28 345 3.20e-21 95.9

Find 79 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCGAAGAACAACAATTT+TGG 0.193641 7.3:-38707806 MS.gene84623:CDS
TATTCTTCCATTGAATTCTT+TGG 0.235584 7.3:+38707753 None:intergenic
AACTCTCTCGAAGTAATATA+TGG 0.304601 7.3:+38706643 None:intergenic
TGGGATTCCTTCTTCCGATT+TGG 0.309886 7.3:-38706455 MS.gene84623:CDS
CTTACTTTCTCAATGTTAGA+TGG 0.325555 7.3:+38707867 None:intergenic
CGGGGTAGAACACATGTTAA+AGG 0.327870 7.3:-38706908 MS.gene84623:CDS
TTGAATTGGTGCGCAAGTTT+AGG 0.342447 7.3:+38706781 None:intergenic
CAAATTTAAAATGCAGTTGC+GGG 0.349657 7.3:-38707620 MS.gene84623:CDS
ACTGCCCAACCCTGTTGTAT+TGG 0.353634 7.3:-38707079 MS.gene84623:CDS
CCATGCACATTTAACTGCTT+TGG 0.356014 7.3:-38706671 MS.gene84623:CDS
TTGTCAAAATCCAATACAAC+AGG 0.360905 7.3:+38707069 None:intergenic
TCGTCTTCTGCTCTGACTAA+TGG 0.361646 7.3:-38706266 MS.gene84623:CDS
AAATTGTTGTTCTTCGAGAT+TGG 0.371839 7.3:+38707809 None:intergenic
CTAGTGACACAAAATATATT+AGG 0.371958 7.3:+38706718 None:intergenic
ATACAAGAGCATCCTTGAAT+TGG 0.380895 7.3:-38706854 MS.gene84623:CDS
AACATTGAGAAAGTAAGCTT+TGG 0.387986 7.3:-38707861 MS.gene84623:CDS
TTCAAGTGCAAGAAGATTCA+TGG 0.391251 7.3:+38707458 None:intergenic
TCAACTTTGACTTTAAGAAA+TGG 0.411254 7.3:+38706236 None:intergenic
TGAGACACTTCTCAAAGTTA+AGG 0.415167 7.3:-38706216 MS.gene84623:CDS
TCCTTACATTTCCCTTGGGC+GGG 0.415979 7.3:-38706927 MS.gene84623:CDS
TTCTGATTTAAAAGATAAGC+TGG 0.417425 7.3:-38706809 MS.gene84623:CDS
TAGTTTCCTTACATTTCCCT+TGG 0.418561 7.3:-38706932 MS.gene84623:CDS
TTTGTGTCACTAGACATAAT+AGG 0.420484 7.3:-38706708 MS.gene84623:CDS
TCTGCTCTGACTAATGGTCT+TGG 0.434350 7.3:-38706260 MS.gene84623:CDS
CAAAGGTGTGTTTGAGACTA+AGG 0.434805 7.3:+38707143 None:intergenic
TCAAGGAGGCAAAGATTTCA+TGG 0.435034 7.3:-38707949 MS.gene84623:CDS
ACTGGTTACGAAGTTTGAAT+TGG 0.441110 7.3:+38706767 None:intergenic
TAAGGATGAGCTCAAAGTTA+AGG 0.447408 7.3:-38706198 MS.gene84623:CDS
CTTTCCTCCAAATCGGAAGA+AGG 0.453157 7.3:+38706448 None:intergenic
GATTCCTTCTTCCGATTTGG+AGG 0.454490 7.3:-38706452 MS.gene84623:CDS
ATGTGTCACTGTCCAATTCA+AGG 0.455231 7.3:+38706842 None:intergenic
GATCATTCTTTCCTCCAAAT+CGG 0.457025 7.3:+38706441 None:intergenic
AAGCCTAGCAATTGTAGCTA+AGG 0.458301 7.3:+38707899 None:intergenic
TCTTCAACCAAAGAATTCAA+TGG 0.459163 7.3:-38707760 MS.gene84623:CDS
TTGGAGCCACAGTCATCAAA+TGG 0.468782 7.3:-38706601 MS.gene84623:CDS
AGACATAATAGGAGAAGAAC+TGG 0.475136 7.3:-38706697 MS.gene84623:CDS
TTTCATCAAAGGGCAACAAC+TGG 0.478419 7.3:+38706749 None:intergenic
ACACAAAATATATTAGGATC+AGG 0.478516 7.3:+38706724 None:intergenic
AAATCCAATACAACAGGGTT+GGG 0.479589 7.3:+38707075 None:intergenic
GAGGAAAGAATGATCACCAT+TGG 0.483156 7.3:-38706433 MS.gene84623:CDS
AGTTTCCTTACATTTCCCTT+GGG 0.483205 7.3:-38706931 MS.gene84623:CDS
GGATCAGGCATTTCATCAAA+GGG 0.495430 7.3:+38706739 None:intergenic
AGGATCAGGCATTTCATCAA+AGG 0.497099 7.3:+38706738 None:intergenic
GTAACAAGAGTATCAGTTTG+AGG 0.511310 7.3:+38706166 None:intergenic
TTCCTTACATTTCCCTTGGG+CGG 0.512120 7.3:-38706928 MS.gene84623:CDS
AAAATCCAATACAACAGGGT+TGG 0.520441 7.3:+38707074 None:intergenic
GGGGTAGAACACATGTTAAA+GGG 0.523293 7.3:-38706907 MS.gene84623:CDS
TCAAATTTAAAATGCAGTTG+CGG 0.524990 7.3:-38707621 MS.gene84623:CDS
TCAAGTGCAAGAAGATTCAT+GGG 0.529660 7.3:+38707459 None:intergenic
TTCCCTTAGCTACAATTGCT+AGG 0.535607 7.3:-38707902 MS.gene84623:CDS
TCAGTCACCATGTAAAATGC+TGG 0.536470 7.3:+38706535 None:intergenic
TTACATGGTGACTGATGACT+TGG 0.536780 7.3:-38706527 MS.gene84623:CDS
CAGAGCAGAAGACGACATCA+AGG 0.539091 7.3:+38706274 None:intergenic
CCTTACATTTCCCTTGGGCG+GGG 0.543355 7.3:-38706926 MS.gene84623:CDS
TATGGTGATTGTGGTGGAAG+AGG 0.543911 7.3:-38706571 MS.gene84623:CDS
TGCTTACAAGTTTATGAGCG+TGG 0.546472 7.3:-38707427 MS.gene84623:CDS
AAAGCATAACATCGATGTCT+CGG 0.547614 7.3:-38707718 MS.gene84623:CDS
TCATCAAATGGCGAAGCGTA+TGG 0.553248 7.3:-38706589 MS.gene84623:CDS
CCCCGCCCAAGGGAAATGTA+AGG 0.553475 7.3:+38706926 None:intergenic
CCAAAGCAGTTAAATGTGCA+TGG 0.559218 7.3:+38706671 None:intergenic
AGCCTAGCAATTGTAGCTAA+GGG 0.571248 7.3:+38707900 None:intergenic
CATGTGTTCTACCCCGCCCA+AGG 0.595789 7.3:+38706915 None:intergenic
ATGTGTTCTACCCCGCCCAA+GGG 0.607536 7.3:+38706916 None:intergenic
ATGACAGAAACAGAGGTACA+TGG 0.613741 7.3:+38706496 None:intergenic
AGTGGTCAACAATCCACCAC+TGG 0.619436 7.3:+38707647 None:intergenic
GGCGAAGCGTATGGTGATTG+TGG 0.623203 7.3:-38706580 MS.gene84623:CDS
AATACTGTCAATGAAAACGA+AGG 0.627418 7.3:-38707045 MS.gene84623:CDS
AATTCTCAGTGAAATTTGTG+TGG 0.632684 7.3:+38708007 None:intergenic
TAGCACGCTGTATGAAAGTG+TGG 0.633787 7.3:-38707832 MS.gene84623:CDS
ATACTGTCAATGAAAACGAA+GGG 0.638947 7.3:-38707044 MS.gene84623:CDS
ATGTTAAAGGGAAACTCATG+TGG 0.642490 7.3:-38706895 MS.gene84623:CDS
GCTTCGCCATTTGATGACTG+TGG 0.659915 7.3:+38706595 None:intergenic
TGTAGTCGTCAATCCAGTGG+TGG 0.663241 7.3:-38707660 MS.gene84623:CDS
GATTGTAGTCGTCAATCCAG+TGG 0.678128 7.3:-38707663 MS.gene84623:CDS
GCATAACATCGATGTCTCGG+AGG 0.684769 7.3:-38707715 MS.gene84623:CDS
AAATGAAATGACAGAAACAG+AGG 0.690630 7.3:+38706489 None:intergenic
TGTCAAAATCCAATACAACA+GGG 0.693439 7.3:+38707070 None:intergenic
GAAGCGTATGGTGATTGTGG+TGG 0.710145 7.3:-38706577 MS.gene84623:CDS
CGTGGATGTCACTTTCAACG+AGG 0.734846 7.3:-38707409 MS.gene84623:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAATATTTATAACA+TGG + chr7.3:38706830-38706849 None:intergenic 10.0%
!! AAAAATGTACTAGTATTTAA+TGG + chr7.3:38706907-38706926 None:intergenic 15.0%
!!! AAAGAAAAAATTGATAATGA+AGG - chr7.3:38706625-38706644 MS.gene84623:CDS 15.0%
!!! ATTAAATACTAGTACATTTT+TGG - chr7.3:38706906-38706925 MS.gene84623:CDS 15.0%
!! AGGGAAGAAAATAAAAATAA+AGG - chr7.3:38707164-38707183 MS.gene84623:CDS 20.0%
!!! AATAAAGTTTTATTTGCTCA+AGG - chr7.3:38706223-38706242 MS.gene84623:CDS 20.0%
!!! TATTTGTATTTTGTAGATAC+TGG - chr7.3:38707008-38707027 MS.gene84623:CDS 20.0%
!!! TGCAAATAAAATTTTGTTGT+TGG + chr7.3:38707205-38707224 None:intergenic 20.0%
!!! TTTGGATTTTTTTTTTTGCA+GGG - chr7.3:38707872-38707891 MS.gene84623:CDS 20.0%
! ACACAAAATATATTAGGATC+AGG + chr7.3:38707468-38707487 None:intergenic 25.0%
! CTAGTGACACAAAATATATT+AGG + chr7.3:38707474-38707493 None:intergenic 25.0%
! CTGCAAAAAAAAAAATCCAA+AGG + chr7.3:38707873-38707892 None:intergenic 25.0%
! TATTCTTCCATTGAATTCTT+TGG + chr7.3:38706439-38706458 None:intergenic 25.0%
! TTCTGATTTAAAAGATAAGC+TGG - chr7.3:38707380-38707399 MS.gene84623:intron 25.0%
!! ATGTGTTCTATTGAAGTTTT+TGG - chr7.3:38707569-38707588 MS.gene84623:CDS 25.0%
!! GCATTTTAAATTTGAGAAAG+TGG + chr7.3:38706563-38706582 None:intergenic 25.0%
!! TCAAATTTAAAATGCAGTTG+CGG - chr7.3:38706568-38706587 MS.gene84623:CDS 25.0%
!! TCAACTTTGACTTTAAGAAA+TGG + chr7.3:38707956-38707975 None:intergenic 25.0%
!!! ATTGGTTCATTTTATTCCTT+TGG - chr7.3:38707854-38707873 MS.gene84623:CDS 25.0%
!!! ATTTCATTTTTGAGTAAGCT+TGG - chr7.3:38707714-38707733 MS.gene84623:CDS 25.0%
!!! CGATGTTATGCTTTAATTTT+TGG + chr7.3:38706465-38706484 None:intergenic 25.0%
!!! CTTTGGATTTTTTTTTTTGC+AGG - chr7.3:38707871-38707890 MS.gene84623:CDS 25.0%
!!! TTTCATTTTTGAGTAAGCTT+GGG - chr7.3:38707715-38707734 MS.gene84623:CDS 25.0%
AAATGAAATGACAGAAACAG+AGG + chr7.3:38707703-38707722 None:intergenic 30.0%
AACATTGAGAAAGTAAGCTT+TGG - chr7.3:38706328-38706347 MS.gene84623:intron 30.0%
AACTCTCTCGAAGTAATATA+TGG + chr7.3:38707549-38707568 None:intergenic 30.0%
AACTTCATTACACAACACAT+TGG - chr7.3:38707836-38707855 MS.gene84623:CDS 30.0%
AATACTGTCAATGAAAACGA+AGG - chr7.3:38707144-38707163 MS.gene84623:CDS 30.0%
AATTCTCAGTGAAATTTGTG+TGG + chr7.3:38706185-38706204 None:intergenic 30.0%
AGCAAAAAAATGTCTGTCAA+AGG + chr7.3:38707066-38707085 None:intergenic 30.0%
ATACTGTCAATGAAAACGAA+GGG - chr7.3:38707145-38707164 MS.gene84623:CDS 30.0%
CTTACTTTCTCAATGTTAGA+TGG + chr7.3:38706325-38706344 None:intergenic 30.0%
TCTTCAACCAAAGAATTCAA+TGG - chr7.3:38706429-38706448 MS.gene84623:CDS 30.0%
TGTCAAAATCCAATACAACA+GGG + chr7.3:38707122-38707141 None:intergenic 30.0%
TTGTCAAAATCCAATACAAC+AGG + chr7.3:38707123-38707142 None:intergenic 30.0%
! AAATTGTTGTTCTTCGAGAT+TGG + chr7.3:38706383-38706402 None:intergenic 30.0%
! AGTTTTTAATATGCGACGAT+TGG - chr7.3:38706503-38706522 MS.gene84623:CDS 30.0%
! ATCTCGAAGAACAACAATTT+TGG - chr7.3:38706383-38706402 MS.gene84623:intron 30.0%
! CAAATTTAAAATGCAGTTGC+GGG - chr7.3:38706569-38706588 MS.gene84623:CDS 30.0%
! GTTTTTAATATGCGACGATT+GGG - chr7.3:38706504-38706523 MS.gene84623:CDS 30.0%
! TGCAGCAACTTTTTGTATTT+CGG - chr7.3:38706660-38706679 MS.gene84623:CDS 30.0%
! TTTGTGTCACTAGACATAAT+AGG - chr7.3:38707481-38707500 MS.gene84623:CDS 30.0%
!!! AAAGTTTTATTTGCTCAAGG+AGG - chr7.3:38706226-38706245 MS.gene84623:CDS 30.0%
!!! CTTTACCTCTTTTTTTCCAA+TGG + chr7.3:38707775-38707794 None:intergenic 30.0%
!!! TTTTTTTTTTTGCAGGGTCT+TGG - chr7.3:38707878-38707897 MS.gene84623:CDS 30.0%
AAAATCCAATACAACAGGGT+TGG + chr7.3:38707118-38707137 None:intergenic 35.0%
AAAGCATAACATCGATGTCT+CGG - chr7.3:38706471-38706490 MS.gene84623:CDS 35.0%
AAATCCAATACAACAGGGTT+GGG + chr7.3:38707117-38707136 None:intergenic 35.0%
ACTGGTTACGAAGTTTGAAT+TGG + chr7.3:38707425-38707444 None:intergenic 35.0%
AGACATAATAGGAGAAGAAC+TGG - chr7.3:38707492-38707511 MS.gene84623:CDS 35.0%
AGTTTCCTTACATTTCCCTT+GGG - chr7.3:38707258-38707277 MS.gene84623:intron 35.0%
ATGTTAAAGGGAAACTCATG+TGG - chr7.3:38707294-38707313 MS.gene84623:intron 35.0%
GATCACCATTGGAAAAAAAG+AGG - chr7.3:38707767-38707786 MS.gene84623:CDS 35.0%
GATCATTCTTTCCTCCAAAT+CGG + chr7.3:38707751-38707770 None:intergenic 35.0%
TAAGGATGAGCTCAAAGTTA+AGG - chr7.3:38707991-38708010 MS.gene84623:CDS 35.0%
TAGTTTCCTTACATTTCCCT+TGG - chr7.3:38707257-38707276 MS.gene84623:intron 35.0%
TCAAGTGCAAGAAGATTCAT+GGG + chr7.3:38706733-38706752 None:intergenic 35.0%
TGAGACACTTCTCAAAGTTA+AGG - chr7.3:38707973-38707992 MS.gene84623:CDS 35.0%
TTCAAGTGCAAGAAGATTCA+TGG + chr7.3:38706734-38706753 None:intergenic 35.0%
! GACAAGATCGTTTCTTTTGT+TGG - chr7.3:38706867-38706886 MS.gene84623:CDS 35.0%
!! ATACAAGAGCATCCTTGAAT+TGG - chr7.3:38707335-38707354 MS.gene84623:intron 35.0%
AAGCCTAGCAATTGTAGCTA+AGG + chr7.3:38706293-38706312 None:intergenic 40.0%
AGCCTAGCAATTGTAGCTAA+GGG + chr7.3:38706292-38706311 None:intergenic 40.0%
AGGATCAGGCATTTCATCAA+AGG + chr7.3:38707454-38707473 None:intergenic 40.0%
CCAAAGCAGTTAAATGTGCA+TGG + chr7.3:38707521-38707540 None:intergenic 40.0%
CCATGCACATTTAACTGCTT+TGG - chr7.3:38707518-38707537 MS.gene84623:CDS 40.0%
GAGGAAAGAATGATCACCAT+TGG - chr7.3:38707756-38707775 MS.gene84623:CDS 40.0%
GGATCAGGCATTTCATCAAA+GGG + chr7.3:38707453-38707472 None:intergenic 40.0%
GGGGTAGAACACATGTTAAA+GGG - chr7.3:38707282-38707301 MS.gene84623:intron 40.0%
TCAAGGAGGCAAAGATTTCA+TGG - chr7.3:38706240-38706259 MS.gene84623:CDS 40.0%
TCAGTCACCATGTAAAATGC+TGG + chr7.3:38707657-38707676 None:intergenic 40.0%
TGCTTACAAGTTTATGAGCG+TGG - chr7.3:38706762-38706781 MS.gene84623:CDS 40.0%
TTACATGGTGACTGATGACT+TGG - chr7.3:38707662-38707681 MS.gene84623:CDS 40.0%
TTCCCTTAGCTACAATTGCT+AGG - chr7.3:38706287-38706306 MS.gene84623:CDS 40.0%
TTGAATTGGTGCGCAAGTTT+AGG + chr7.3:38707411-38707430 None:intergenic 40.0%
TTTCATCAAAGGGCAACAAC+TGG + chr7.3:38707443-38707462 None:intergenic 40.0%
! ATGACAGAAACAGAGGTACA+TGG + chr7.3:38707696-38707715 None:intergenic 40.0%
! ATGTGTCACTGTCCAATTCA+AGG + chr7.3:38707350-38707369 None:intergenic 40.0%
! CAAAGGTGTGTTTGAGACTA+AGG + chr7.3:38707049-38707068 None:intergenic 40.0%
! GAAGAGTCCAGCATTTTACA+TGG - chr7.3:38707647-38707666 MS.gene84623:CDS 40.0%
!!! AGAAGCATTTTCTTACACGC+AGG + chr7.3:38706412-38706431 None:intergenic 40.0%
CGGGGTAGAACACATGTTAA+AGG - chr7.3:38707281-38707300 MS.gene84623:intron 45.0%
CTTTCCTCCAAATCGGAAGA+AGG + chr7.3:38707744-38707763 None:intergenic 45.0%
GATTGTAGTCGTCAATCCAG+TGG - chr7.3:38706526-38706545 MS.gene84623:CDS 45.0%
TAGCACGCTGTATGAAAGTG+TGG - chr7.3:38706357-38706376 MS.gene84623:intron 45.0%
TCATCAAATGGCGAAGCGTA+TGG - chr7.3:38707600-38707619 MS.gene84623:CDS 45.0%
TCGTCTTCTGCTCTGACTAA+TGG - chr7.3:38707923-38707942 MS.gene84623:CDS 45.0%
TCTGCTCTGACTAATGGTCT+TGG - chr7.3:38707929-38707948 MS.gene84623:CDS 45.0%
TGGGATTCCTTCTTCCGATT+TGG - chr7.3:38707734-38707753 MS.gene84623:CDS 45.0%
TTCCTTACATTTCCCTTGGG+CGG - chr7.3:38707261-38707280 MS.gene84623:intron 45.0%
TTGGAGCCACAGTCATCAAA+TGG - chr7.3:38707588-38707607 MS.gene84623:CDS 45.0%
! TATGGTGATTGTGGTGGAAG+AGG - chr7.3:38707618-38707637 MS.gene84623:CDS 45.0%
!! GATTCCTTCTTCCGATTTGG+AGG - chr7.3:38707737-38707756 MS.gene84623:CDS 45.0%
ACTGCCCAACCCTGTTGTAT+TGG - chr7.3:38707110-38707129 MS.gene84623:CDS 50.0%
AGTGGTCAACAATCCACCAC+TGG + chr7.3:38706545-38706564 None:intergenic 50.0%
CAGAGCAGAAGACGACATCA+AGG + chr7.3:38707918-38707937 None:intergenic 50.0%
GAAGCGTATGGTGATTGTGG+TGG - chr7.3:38707612-38707631 MS.gene84623:CDS 50.0%
GCATAACATCGATGTCTCGG+AGG - chr7.3:38706474-38706493 MS.gene84623:CDS 50.0%
TCCTTACATTTCCCTTGGGC+GGG - chr7.3:38707262-38707281 MS.gene84623:intron 50.0%
TGTAGTCGTCAATCCAGTGG+TGG - chr7.3:38706529-38706548 MS.gene84623:CDS 50.0%
! GCTTCGCCATTTGATGACTG+TGG + chr7.3:38707597-38707616 None:intergenic 50.0%
!! CGTGGATGTCACTTTCAACG+AGG - chr7.3:38706780-38706799 MS.gene84623:CDS 50.0%
ATGTGTTCTACCCCGCCCAA+GGG + chr7.3:38707276-38707295 None:intergenic 55.0%
CCTTACATTTCCCTTGGGCG+GGG - chr7.3:38707263-38707282 MS.gene84623:intron 55.0%
GGCGAAGCGTATGGTGATTG+TGG - chr7.3:38707609-38707628 MS.gene84623:CDS 55.0%
CATGTGTTCTACCCCGCCCA+AGG + chr7.3:38707277-38707296 None:intergenic 60.0%
CCCCGCCCAAGGGAAATGTA+AGG + chr7.3:38707266-38707285 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38706178 38708033 38706178 ID=MS.gene84623
chr7.3 mRNA 38706178 38708033 38706178 ID=MS.gene84623.t1;Parent=MS.gene84623
chr7.3 exon 38707410 38708033 38707410 ID=MS.gene84623.t1.exon1;Parent=MS.gene84623.t1
chr7.3 CDS 38707410 38708033 38707410 ID=cds.MS.gene84623.t1;Parent=MS.gene84623.t1
chr7.3 exon 38706423 38707187 38706423 ID=MS.gene84623.t1.exon2;Parent=MS.gene84623.t1
chr7.3 CDS 38706423 38707187 38706423 ID=cds.MS.gene84623.t1;Parent=MS.gene84623.t1
chr7.3 exon 38706178 38706318 38706178 ID=MS.gene84623.t1.exon3;Parent=MS.gene84623.t1
chr7.3 CDS 38706178 38706318 38706178 ID=cds.MS.gene84623.t1;Parent=MS.gene84623.t1
Gene Sequence

>MS.gene84623

ATGGCCACACAAATTTCACTGAGAATTCTGATCGATGAAGAGAAAAATAAAGTTTTATTTGCTCAAGGAGGCAAAGATTTCATGGATATCATGCTTAGTTTCTTAACATTTCCCTTAGCTACAATTGCTAGGCTTGTTAACACGCCATCTAACATTGAGAAAGTAAGCTTTGGAAGCATTAGCACGCTGTATGAAAGTGTGGCCAATCTCGAAGAACAACAATTTTGGACACCTGCGTGTAAGAAAATGCTTCTTCAACCAAAGAATTCAATGGAAGAATATTGCCAAAAATTAAAGCATAACATCGATGTCTCGGAGGAAACTAAGTTTTTAATATGCGACGATTGGGATTGTAGTCGTCAATCCAGTGGTGGATTGTTGACCACTTTCTCAAATTTAAAATGCAGTTGCGGGAGTTTTATGTCTCAATCGATATATCTTGCTGATAAAGAAAAAATTGATAATGAAGGATTTGTTGCAGATGCAGCAACTTTTTGTATTTCGGATGATTTAAGTGTGAAGTCTGATAGTTTTCAAAATTCTATTTGTGAACCCATGAATCTTCTTGCACTTGAAAACTTCAGTGCTTACAAGTTTATGAGCGTGGATGTCACTTTCAACGAGGTATCTTTTTCTCTTACGCAAAATTCCATGTTATAAATATTTTGTTTAGTGAGTTTCTTGCTTTTGACAAGATCGTTTCTTTTGTTGGATCTTAATATTTTGCCATTAAATACTAGTACATTTTTGGAATTATTTATTAAAATAATGTGAATACTAGAATTTTATTAAAAAAATTGCTTCGTTTTAATGTAGTGCACTGCATTGTTTATTTGTATTTTGTAGATACTGGATTTGTTGAAGTGCTCCTTAGTCTCAAACACACCTTTGACAGACATTTTTTTGCTGAAGAAACAGAATTTTGAGAATTCACTGCCCAACCCTGTTGTATTGGATTTTGACAATAATACTGTCAATGAAAACGAAGGGAAGAAAATAAAAATAAAGGTAATGCTGCAAAAATCCAACAACAAAATTTTATTTGCATTAGCTGATGCTGATTTTGCAGACTTCATTCTTAGTTTCCTTACATTTCCCTTGGGCGGGGTAGAACACATGTTAAAGGGAAACTCATGTGGATCAAGCATAGACAATTTATACAAGAGCATCCTTGAATTGGACAGTGACACATACTTGAGATCTTCTGATTTAAAAGATAAGCTGGTTAAACCTAAACTTGCGCACCAATTCAAACTTCGTAACCAGTTGTTGCCCTTTGATGAAATGCCTGATCCTAATATATTTTGTGTCACTAGACATAATAGGAGAAGAACTGGTTTCCATGCACATTTAACTGCTTTGGAAGATCCATATATTACTTCGAGAGAGTTATGTGTTCTATTGAAGTTTTTGGAGCCACAGTCATCAAATGGCGAAGCGTATGGTGATTGTGGTGGAAGAGGATTCATGAAGAGTCCAGCATTTTACATGGTGACTGATGACTTGGTTGTCACGCCATGTACCTCTGTTTCTGTCATTTCATTTTTGAGTAAGCTTGGGATTCCTTCTTCCGATTTGGAGGAAAGAATGATCACCATTGGAAAAAAAGAGGTAAAGTAAAGCATGTTACTTTCACATTAGTATTCATTGTTTCAACAAACTTCATTACACAACACATTGGTTCATTTTATTCCTTTGGATTTTTTTTTTTGCAGGGTCTTGGCATTTTGAAAGCTTCCTTGATGTCGTCTTCTGCTCTGACTAATGGTCTTGGTCCATTTCTTAAAGTCAAAGTTGAGACACTTCTCAAAGTTAAGGATGAGCTCAAAGTTAAGGATGAGAATACCTCAAACTGA
Protein sequence

>MS.gene84623.t1

MATQISLRILIDEEKNKVLFAQGGKDFMDIMLSFLTFPLATIARLVNTPSNIEKVSFGSISTLYESVANLEEQQFWTPACKKMLLQPKNSMEEYCQKLKHNIDVSEETKFLICDDWDCSRQSSGGLLTTFSNLKCSCGSFMSQSIYLADKEKIDNEGFVADAATFCISDDLSVKSDSFQNSICEPMNLLALENFSAYKFMSVDVTFNEILDLLKCSLVSNTPLTDIFLLKKQNFENSLPNPVVLDFDNNTVNENEGKKIKIKVMLQKSNNKILFALADADFADFILSFLTFPLGGVEHMLKGNSCGSSIDNLYKSILELDSDTYLRSSDLKDKLVKPKLAHQFKLRNQLLPFDEMPDPNIFCVTRHNRRRTGFHAHLTALEDPYITSRELCVLLKFLEPQSSNGEAYGDCGGRGFMKSPAFYMVTDDLVVTPCTSVSVISFLSKLGIPSSDLEERMITIGKKEGLGILKASLMSSSALTNGLGPFLKVKVETLLKVKDELKVKDENTSN