AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92596

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92596.t1 MTR_4g019340 79.052 401 54 3 1 396 128 503 0.0 627
MS.gene92596.t1 MTR_4g017830 74.155 414 100 3 1 411 97 506 0.0 612
MS.gene92596.t1 MTR_4g017440 69.100 411 117 5 1 410 105 506 0.0 548
MS.gene92596.t1 MTR_4g017410 65.625 416 112 5 1 410 98 488 0.0 525
MS.gene92596.t1 MTR_4g017550 67.482 409 118 7 1 406 77 473 0.0 519
MS.gene92596.t1 MTR_4g017470 62.228 413 116 3 1 411 101 475 1.00e-166 478
MS.gene92596.t1 MTR_4g017610 56.716 402 148 6 1 402 100 475 6.96e-148 429
MS.gene92596.t1 MTR_4g019310 43.552 411 204 12 1 402 95 486 2.97e-94 293
MS.gene92596.t1 MTR_4g019310 28.163 245 146 7 171 399 8 238 4.06e-14 74.7
MS.gene92596.t1 MTR_7g066340 34.048 420 206 12 1 406 91 453 1.62e-60 204
MS.gene92596.t1 MTR_7g066340 28.216 241 140 8 171 399 12 231 2.42e-19 90.5
MS.gene92596.t1 MTR_7g066570 35.172 435 214 16 1 410 93 484 1.14e-59 204
MS.gene92596.t1 MTR_7g066400 34.112 428 211 12 1 415 75 444 9.18e-58 196
MS.gene92596.t1 MTR_7g058710 32.553 427 249 10 1 411 79 482 7.97e-57 195
MS.gene92596.t1 MTR_7g058710 25.862 232 147 5 171 399 12 221 9.50e-15 76.3
MS.gene92596.t1 MTR_7g066260 33.729 421 212 12 1 406 94 462 7.00e-56 192
MS.gene92596.t1 MTR_7g066260 29.412 238 135 9 174 399 18 234 9.36e-14 73.6
MS.gene92596.t1 MTR_7g066410 33.557 447 233 12 1 406 89 512 1.28e-55 192
MS.gene92596.t1 MTR_7g066350 33.253 415 207 9 1 402 88 445 1.93e-52 182
MS.gene92596.t1 MTR_7g066350 28.992 238 142 5 171 400 9 227 1.46e-18 87.8
MS.gene92596.t1 MTR_7g066430 33.781 447 245 14 1 423 83 502 3.99e-47 169
MS.gene92596.t1 MTR_7g062280 32.648 438 232 16 1 411 89 490 1.06e-46 168
MS.gene92596.t1 MTR_7g062280 31.048 248 132 11 172 399 11 239 1.59e-14 75.9
MS.gene92596.t1 MTR_7g012680 32.477 428 200 14 1 410 93 449 3.88e-45 163
MS.gene92596.t1 MTR_7g012680 26.506 249 137 9 159 400 2 211 2.18e-13 72.0
MS.gene92596.t1 MTR_7g066360 33.890 419 202 14 1 406 93 449 3.18e-43 158
MS.gene92596.t1 MTR_7g063900 33.492 421 238 16 1 406 89 482 4.26e-43 158
MS.gene92596.t1 MTR_7g063900 28.862 246 138 9 171 404 10 230 6.80e-15 77.0
MS.gene92596.t1 MTR_1g041315 30.549 419 202 14 1 390 93 451 1.18e-42 157
MS.gene92596.t1 MTR_7g062300 30.641 421 237 14 1 405 91 472 4.51e-42 155
MS.gene92596.t1 MTR_7g062300 30.453 243 128 11 172 399 13 229 2.61e-13 72.0
MS.gene92596.t1 MTR_7g063660 31.604 424 242 14 1 411 88 476 2.10e-41 153
MS.gene92596.t1 MTR_7g063660 38.938 113 60 3 171 276 9 119 1.61e-15 79.0
MS.gene92596.t1 MTR_7g066280 28.103 427 249 11 1 406 1 390 2.76e-41 151
MS.gene92596.t1 MTR_7g063880 29.647 425 246 15 1 415 90 471 1.77e-40 150
MS.gene92596.t1 MTR_7g063880 28.750 240 135 9 171 399 11 225 2.15e-14 75.5
MS.gene92596.t1 MTR_7g063840 30.374 428 237 15 1 411 89 472 5.26e-40 149
MS.gene92596.t1 MTR_7g066580 30.549 419 223 13 1 404 74 439 1.82e-39 147
MS.gene92596.t1 MTR_7g066310 29.087 416 167 13 1 406 86 383 3.41e-38 143
MS.gene92596.t1 MTR_3g065200 30.073 409 212 14 1 400 72 415 3.64e-36 138
MS.gene92596.t1 MTR_7g063890 31.354 421 246 14 1 406 106 498 1.38e-35 137
MS.gene92596.t1 MTR_7g063890 27.966 236 136 7 174 399 30 241 4.60e-13 71.2
MS.gene92596.t1 MTR_7g066290 36.823 277 151 9 1 262 94 361 3.19e-34 132
MS.gene92596.t1 MTR_7g063670 30.140 428 227 15 2 411 83 456 3.27e-34 133
MS.gene92596.t1 MTR_7g063820 29.535 430 250 14 1 411 88 483 1.24e-33 132
MS.gene92596.t1 MTR_7g063820 35.185 108 64 2 165 266 4 111 1.98e-11 66.2
MS.gene92596.t1 MTR_7g058700 33.333 285 129 10 1 254 584 838 8.07e-33 132
MS.gene92596.t1 MTR_7g063920 28.537 417 221 12 1 411 90 435 1.20e-32 128
MS.gene92596.t1 MTR_3g007740 29.469 414 235 14 2 406 77 442 5.26e-31 124
MS.gene92596.t1 MTR_7g063830 31.894 301 175 9 1 287 89 373 2.70e-30 122
MS.gene92596.t1 MTR_7g063830 26.971 241 133 8 174 399 13 225 1.63e-12 69.3
MS.gene92596.t1 MTR_7g066680 31.132 318 161 7 123 402 37 334 7.26e-29 116
MS.gene92596.t1 MTR_2g029400 26.764 411 184 10 1 394 93 403 6.60e-24 103
MS.gene92596.t1 MTR_4g019350 53.535 99 33 2 229 327 1 86 1.54e-23 94.4
MS.gene92596.t1 MTR_7g063720 30.252 238 128 3 168 402 20 222 3.62e-23 98.2
MS.gene92596.t1 MTR_7g066480 35.556 270 138 12 1 253 95 345 8.19e-23 100
MS.gene92596.t1 MTR_8g445860 28.740 254 123 7 171 400 13 232 2.16e-22 95.9
MS.gene92596.t1 MTR_7g100420 31.690 284 166 5 123 402 134 393 7.66e-22 97.4
MS.gene92596.t1 MTR_1g115440 29.707 239 143 7 171 400 11 233 9.43e-19 85.5
MS.gene92596.t1 MTR_4g019240 89.583 48 5 0 364 411 112 159 1.08e-18 84.0
MS.gene92596.t1 MTR_7g066490 31.034 261 148 9 1 253 95 331 5.26e-18 85.9
MS.gene92596.t1 MTR_1g014060 31.280 211 104 4 201 406 210 384 5.74e-18 85.5
MS.gene92596.t1 MTR_0150s0010 30.901 233 148 7 171 400 10 232 7.05e-18 83.2
MS.gene92596.t1 MTR_7g063850 28.063 253 155 7 169 417 64 293 1.14e-17 83.6
MS.gene92596.t1 MTR_8g023240 24.309 362 233 9 59 408 159 491 9.46e-17 82.8
MS.gene92596.t1 MTR_1g115450 39.241 79 46 1 171 247 7 85 2.96e-13 67.4
MS.gene92596.t1 MTR_4g019330 42.857 91 50 2 323 411 97 187 6.36e-12 64.7
MS.gene92596.t1 MTR_0150s0030 30.081 123 65 3 171 290 8 112 6.57e-12 65.1
MS.gene92596.t1 MTR_8g445910 30.894 123 64 3 171 290 8 112 9.75e-12 65.5
MS.gene92596.t1 MTR_1g115455 36.709 79 48 1 171 247 9 87 1.58e-11 64.3
MS.gene92596.t1 MTR_7g066390 37.815 119 65 3 320 434 41 154 3.61e-11 61.6
MS.gene92596.t1 MTR_8g044880 38.095 84 48 2 171 251 8 90 3.81e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92596.t1 AT5G01120 30.216 417 257 11 1 402 88 485 2.85e-42 156
MS.gene92596.t1 AT5G01140 32.195 410 236 14 1 402 72 447 1.58e-41 153
MS.gene92596.t1 AT5G01130 29.147 422 238 12 1 419 88 451 2.70e-39 147
MS.gene92596.t1 AT5G43240 30.211 427 248 14 1 402 88 489 1.01e-38 146
MS.gene92596.t1 AT5G43240 30.211 427 248 14 1 402 88 489 1.01e-38 146
MS.gene92596.t1 AT5G43240 30.211 427 248 14 1 402 88 489 1.01e-38 146
MS.gene92596.t1 AT3G09140 29.861 432 243 15 1 402 88 489 1.78e-34 134
MS.gene92596.t1 AT3G09140 27.049 244 162 7 167 399 5 243 1.60e-14 75.9
MS.gene92596.t1 AT5G01150 29.730 444 239 16 1 416 88 486 7.25e-31 124
MS.gene92596.t1 AT5G43240 30.028 363 213 10 58 402 6 345 9.35e-31 122
MS.gene92596.t1 AT3G09140 28.043 460 243 16 1 402 88 517 9.26e-30 121
MS.gene92596.t1 AT3G09140 26.794 209 138 6 167 365 5 208 7.77e-12 67.4
MS.gene92596.t1 AT5G37320 27.460 437 242 14 1 407 89 480 5.88e-27 113
MS.gene92596.t1 AT3G09110 33.058 242 141 7 1 232 88 318 9.92e-26 107
MS.gene92596.t1 AT3G09120 32.780 241 135 10 1 225 84 313 1.38e-23 100
MS.gene92596.t1 AT3G09120 29.289 239 145 8 171 400 6 229 9.72e-15 75.1

Find 97 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAAACAACCTAAGAATT+TGG 0.172998 4.2:+83069652 MS.gene92596:CDS
CGTAAATCCCTTTCTATCTT+TGG 0.216309 4.2:-83072681 None:intergenic
TCCTGATGTAATACTTGTTT+TGG 0.263891 4.2:-83073666 None:intergenic
ACCATCCAAAACCTTTATAA+TGG 0.287548 4.2:-83072469 None:intergenic
ACCATTAGGGTCCATTATAA+AGG 0.300457 4.2:+83072458 MS.gene92596:CDS
CTCACCACTACATATTATTA+TGG 0.301079 4.2:+83072648 MS.gene92596:CDS
CCCTCAGAATCCAAATTCTT+AGG 0.303798 4.2:-83069662 None:intergenic
ATGCACCCGTGACATTAAAA+TGG 0.306519 4.2:+83072341 MS.gene92596:CDS
CAGGGGAATGAGGTTCAAAA+TGG 0.309879 4.2:+83069686 MS.gene92596:CDS
GAAGGTTGTGCCTAGTTCTT+TGG 0.316285 4.2:+83069757 MS.gene92596:CDS
ATTGATTTGTTAGGAGATCT+TGG 0.318054 4.2:-83072810 None:intergenic
ATGCAGATGTTGGTGGAGTT+AGG 0.331679 4.2:+83069788 MS.gene92596:CDS
AGGGTCCATTATAAAGGTTT+TGG 0.333963 4.2:+83072464 MS.gene92596:CDS
AATGATTCACATGGATTCTT+CGG 0.347163 4.2:-83069509 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.351633 4.2:+83072444 MS.gene92596:CDS
GTGAAGAGACCGGCATTATA+TGG 0.352416 4.2:+83072852 MS.gene92596:CDS
TGGTAGGTTGTCTTTCTTCT+CGG 0.353419 4.2:-83072286 None:intergenic
CTCTGACTGCTGATGCAAAC+TGG 0.370802 4.2:-83072311 None:intergenic
TTCAAAATTGTATTTGTCAA+TGG 0.373137 4.2:-83072255 None:intergenic
GAATTTGGATTCTGAGGGTC+AGG 0.378169 4.2:+83069667 MS.gene92596:CDS
CACACACAACATTGGAAAAC+AGG 0.378988 4.2:+83069841 MS.gene92596:CDS
GCTTCCTTACAATACCATTA+GGG 0.381396 4.2:+83072445 MS.gene92596:CDS
TAGAGAACTTGGACTCTTCC+TGG 0.392959 4.2:+83072532 MS.gene92596:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4.2:-83072612 None:intergenic
TTCTGATTTGAGTCAATTAG+AGG 0.405222 4.2:+83069814 MS.gene92596:CDS
ATTCTTAGGTTGTTTATTAG+TGG 0.415277 4.2:-83069648 None:intergenic
TTTGGTGTTTGATGATTTGA+AGG 0.426957 4.2:+83069739 MS.gene92596:CDS
TTCTTAGGTTGTTTATTAGT+GGG 0.444372 4.2:-83069647 None:intergenic
CAGAATCTTGGTTGTACTTG+TGG 0.449712 4.2:+83069620 MS.gene92596:CDS
ACTGCTGATGCAAACTGGTT+TGG 0.450650 4.2:-83072306 None:intergenic
TGCAGATGTTGGTGGAGTTA+GGG 0.452689 4.2:+83069789 MS.gene92596:CDS
AAGACAATCTTTGCAGAAAC+CGG 0.453087 4.2:+83072396 MS.gene92596:CDS
AGGGGAATGAGGTTCAAAAT+GGG 0.466903 4.2:+83069687 MS.gene92596:CDS
GGAGTGATTTCCAAGACAAT+GGG 0.469540 4.2:+83072750 MS.gene92596:CDS
CCTGGTGTCGCACCACAGTT+TGG 0.469731 4.2:+83072585 MS.gene92596:CDS
ATAAATTGACCCCATTGTCT+TGG 0.470276 4.2:-83072760 None:intergenic
CAGGAACACCAAAGATAGAA+AGG 0.471454 4.2:+83072673 MS.gene92596:CDS
ACCTAAGAATTTGGATTCTG+AGG 0.484684 4.2:+83069661 MS.gene92596:CDS
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4.2:-83072617 None:intergenic
AACAGTAGAAGTACCGGTAG+TGG 0.490753 4.2:+83072725 MS.gene92596:CDS
GGTTGTGCCTAGTTCTTTGG+TGG 0.496010 4.2:+83069760 MS.gene92596:CDS
CGCTCCGCGTTACTCAATCC+TGG 0.496411 4.2:+83072567 MS.gene92596:CDS
ACCTTTATAATGGACCCTAA+TGG 0.499664 4.2:-83072459 None:intergenic
CCAAACTGTGGTGCGACACC+AGG 0.503303 4.2:-83072585 None:intergenic
TCTTGGATCCATTGCAGTCA+AGG 0.503976 4.2:-83072793 None:intergenic
GCCAAAACAAGTATTACATC+AGG 0.508721 4.2:+83073665 MS.gene92596:CDS
GTACAAGAGTGTAGAGAACT+TGG 0.512946 4.2:+83072521 MS.gene92596:CDS
CTTTCACTTCAAGATCATCA+AGG 0.513607 4.2:-83072950 None:intergenic
TTAATTCTTTCAAATATGAA+AGG 0.513759 4.2:-83072920 None:intergenic
GGTGGCTTCCATGCAGATGT+TGG 0.516496 4.2:+83069778 MS.gene92596:CDS
TTCTGAGGGTCAGGGGAATG+AGG 0.516607 4.2:+83069676 MS.gene92596:CDS
TGGACCCTAATGGTATTGTA+AGG 0.519001 4.2:-83072449 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.521118 4.2:+83072654 MS.gene92596:CDS
TGAATATTGATGACACTGAA+TGG 0.522820 4.2:+83069549 MS.gene92596:CDS
TGCAAAAGCCTTGACTGCAA+TGG 0.525800 4.2:+83072785 MS.gene92596:CDS
ATGGAAGCCACCAAAGAACT+AGG 0.533783 4.2:-83069767 None:intergenic
AGGCAAGAATTAGCAGAAAG+TGG 0.533853 4.2:-83072900 None:intergenic
CTTGGACTCTTCCTGGTGTA+CGG 0.536964 4.2:+83072539 MS.gene92596:CDS
GAAATCACTCCTCCCACTAC+CGG 0.538904 4.2:-83072738 None:intergenic
AATTACACTGACTAGTGGAC+TGG 0.540900 4.2:+83073626 MS.gene92596:CDS
GGCTTCCATGCAGATGTTGG+TGG 0.546842 4.2:+83069781 MS.gene92596:CDS
AGGAGTGATTTCCAAGACAA+TGG 0.549627 4.2:+83072749 MS.gene92596:CDS
CCTAAGAATTTGGATTCTGA+GGG 0.549967 4.2:+83069662 MS.gene92596:CDS
TTTCACTTCAAGATCATCAA+GGG 0.554864 4.2:-83072949 None:intergenic
CTTCAAGATCATCAAGGGGA+AGG 0.560418 4.2:-83072944 None:intergenic
AGGAACACCAAAGATAGAAA+GGG 0.570269 4.2:+83072674 MS.gene92596:CDS
GGAGCGCGAGTCCGTACACC+AGG 0.576521 4.2:-83072550 None:intergenic
CTGATGCAAACTGGTTTGGT+AGG 0.578003 4.2:-83072302 None:intergenic
ATTTGGATTCTGAGGGTCAG+GGG 0.580968 4.2:+83069669 MS.gene92596:CDS
GAGGAAGTCACACACAACAT+TGG 0.582955 4.2:+83069833 MS.gene92596:CDS
TTATAAAACAGTAGAAGTAC+CGG 0.583526 4.2:+83072719 MS.gene92596:CDS
TTGTACATGAGGAATGTTGA+GGG 0.587586 4.2:-83072622 None:intergenic
ACAGTAGAAGTACCGGTAGT+GGG 0.598116 4.2:+83072726 MS.gene92596:CDS
TTTCCTACACCATATAATGC+CGG 0.599710 4.2:-83072861 None:intergenic
AATTTGGATTCTGAGGGTCA+GGG 0.610725 4.2:+83069668 MS.gene92596:CDS
TAACTCCACCAACATCTGCA+TGG 0.611734 4.2:-83069786 None:intergenic
GATAAGCATTGGTGAAGCTG+AGG 0.615886 4.2:+83072974 MS.gene92596:CDS
TTCTTGCATAATGATTCACA+TGG 0.617558 4.2:-83069518 None:intergenic
GTGGTGAGTGTTTGTACATG+AGG 0.631505 4.2:-83072633 None:intergenic
TTCACTTCAAGATCATCAAG+GGG 0.637334 4.2:-83072948 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.638916 4.2:-83073602 None:intergenic
ATTTGTCAATGGCTCACGAG+AGG 0.643796 4.2:-83072244 None:intergenic
AGACCGGCATTATATGGTGT+AGG 0.644719 4.2:+83072858 MS.gene92596:CDS
AGGCTAAGCTGTACTTGAGG+AGG 0.644722 4.2:-83072224 None:intergenic
GAAGTGAAAGTGATAAGCAT+TGG 0.646678 4.2:+83072963 MS.gene92596:CDS
TGTACCATAATAATATGTAG+TGG 0.647988 4.2:-83072652 None:intergenic
GGTGGGATTTGTGAAGAGAC+CGG 0.651602 4.2:+83072842 MS.gene92596:CDS
GGGGAATGAGGTTCAAAATG+GGG 0.661152 4.2:+83069688 MS.gene92596:CDS
GAGAGGCTAAGCTGTACTTG+AGG 0.684796 4.2:-83072227 None:intergenic
GTAGAAGTACCGGTAGTGGG+AGG 0.686576 4.2:+83072729 MS.gene92596:CDS
ACACAACATTGGAAAACAGG+AGG 0.691626 4.2:+83069844 MS.gene92596:CDS
TGTACATGAGGAATGTTGAG+GGG 0.709478 4.2:-83072621 None:intergenic
TTTGTACATGAGGAATGTTG+AGG 0.712351 4.2:-83072623 None:intergenic
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4.2:-83073599 None:intergenic
GAGTGATTTCCAAGACAATG+GGG 0.725912 4.2:+83072751 MS.gene92596:CDS
TGGTTTGGACAACCAAACTG+TGG 0.732553 4.2:-83072597 None:intergenic
GACACCAGGATTGAGTAACG+CGG 0.813956 4.2:-83072571 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATGAAAATAGAAAA+TGG + chr4.2:83071938-83071957 MS.gene92596:intron 10.0%
!! AAAAAGATAATGTAATAAGT+AGG + chr4.2:83070962-83070981 MS.gene92596:intron 15.0%
!! AAATATTATTGATATAGGTT+GGG + chr4.2:83073367-83073386 MS.gene92596:intron 15.0%
!! AAGTTCAAACAATAAATTAT+AGG - chr4.2:83070733-83070752 None:intergenic 15.0%
!! TAACAAATCAATTAAAAATG+TGG + chr4.2:83072821-83072840 MS.gene92596:CDS 15.0%
!! TTAATTCTTTCAAATATGAA+AGG - chr4.2:83072923-83072942 None:intergenic 15.0%
!!! AAAAGAATCAATAAAAGTAT+TGG - chr4.2:83073197-83073216 None:intergenic 15.0%
!!! ACATTTTTAATTGATTTGTT+AGG - chr4.2:83072822-83072841 None:intergenic 15.0%
!! AAAGAATATAAAGGAAAGTA+AGG + chr4.2:83070896-83070915 MS.gene92596:intron 20.0%
!! AAATCAATTAAAAATGTGGT+GGG + chr4.2:83072825-83072844 MS.gene92596:CDS 20.0%
!! AATGGTTTCACAAAATTAAA+CGG + chr4.2:83071956-83071975 MS.gene92596:intron 20.0%
!! ATTTGCCATTAAAATAAACT+TGG + chr4.2:83071565-83071584 MS.gene92596:intron 20.0%
!! CGTAGAAATATTATTGATAT+AGG + chr4.2:83073362-83073381 MS.gene92596:intron 20.0%
!! GAAATATTATTGATATAGGT+TGG + chr4.2:83073366-83073385 MS.gene92596:intron 20.0%
!! TAACAGAATGTAATAAGTAA+GGG + chr4.2:83071226-83071245 MS.gene92596:intron 20.0%
!! TAATAAACAACCTAAGAATT+TGG + chr4.2:83069652-83069671 MS.gene92596:CDS 20.0%
!! TTCAAAATTGTATTTGTCAA+TGG - chr4.2:83072258-83072277 None:intergenic 20.0%
!! TTGATATTGTAGTAAAATGA+AGG + chr4.2:83070393-83070412 MS.gene92596:intron 20.0%
!! TTTGCCATTAAAATAAACTT+GGG + chr4.2:83071566-83071585 MS.gene92596:intron 20.0%
!!! AAATACAACTAACACATTTT+AGG - chr4.2:83071630-83071649 None:intergenic 20.0%
!!! ATAAAAGTATTGGATACTTA+TGG - chr4.2:83073187-83073206 None:intergenic 20.0%
!!! GTTTTGAAAAAAAAAACTGT+AGG + chr4.2:83070289-83070308 MS.gene92596:intron 20.0%
!!! TAAAAGTATTGGATACTTAT+GGG - chr4.2:83073186-83073205 None:intergenic 20.0%
!!! TAAATTAGTGTTTTTGTCAT+TGG + chr4.2:83072003-83072022 MS.gene92596:intron 20.0%
!!! TACAAACTATCTTAAGTTTT+AGG - chr4.2:83071082-83071101 None:intergenic 20.0%
!!! TATATAACTTGATGCTTTTA+GGG + chr4.2:83070803-83070822 MS.gene92596:intron 20.0%
!!! TTCATTTTACTACAATATCA+AGG - chr4.2:83070394-83070413 None:intergenic 20.0%
! AAGATAATGTAATAAGTAGG+AGG + chr4.2:83070965-83070984 MS.gene92596:intron 25.0%
! AATATAAAGGAAAGTAAGGA+GGG + chr4.2:83070900-83070919 MS.gene92596:intron 25.0%
! AATGGAAAGGAAAATAAGTA+GGG + chr4.2:83071170-83071189 MS.gene92596:intron 25.0%
! AATTTAACAATGAGCCATTA+AGG - chr4.2:83071989-83072008 None:intergenic 25.0%
! ACAAACAAGTTTACATTACT+TGG - chr4.2:83072162-83072181 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG + chr4.2:83072654-83072673 MS.gene92596:CDS 25.0%
! AGATAATGTAATAAGTAGGA+GGG + chr4.2:83070966-83070985 MS.gene92596:intron 25.0%
! AGTTTGTATTTGACATAGTA+AGG + chr4.2:83071094-83071113 MS.gene92596:intron 25.0%
! ATAAGATAAAATGCTAGCTA+GGG - chr4.2:83071818-83071837 None:intergenic 25.0%
! CAAATCAATTAAAAATGTGG+TGG + chr4.2:83072824-83072843 MS.gene92596:CDS 25.0%
! CAGAACAACAAATAAACAAA+AGG - chr4.2:83073037-83073056 None:intergenic 25.0%
! CTATGTGAGAAAGAATATAA+AGG + chr4.2:83070887-83070906 MS.gene92596:intron 25.0%
! CTTTATATTCTTTCTCACAT+AGG - chr4.2:83070889-83070908 None:intergenic 25.0%
! GTAACAGAATGTAATAAGTA+AGG + chr4.2:83071225-83071244 MS.gene92596:intron 25.0%
! GTTGGTTGTATTTATTAACA+AGG + chr4.2:83071667-83071686 MS.gene92596:intron 25.0%
! GTTTGTATTTGACATAGTAA+GGG + chr4.2:83071095-83071114 MS.gene92596:intron 25.0%
! TACAAGATGTTAAAACGAAA+CGG - chr4.2:83072133-83072152 None:intergenic 25.0%
! TATTAACAAGGAAAATGTGT+CGG + chr4.2:83071679-83071698 MS.gene92596:intron 25.0%
! TATTAACCAAGAAAATGTGT+TGG + chr4.2:83071649-83071668 MS.gene92596:intron 25.0%
! TGTACCATAATAATATGTAG+TGG - chr4.2:83072655-83072674 None:intergenic 25.0%
! TTGCCATTAAAATAAACTTG+GGG + chr4.2:83071567-83071586 MS.gene92596:intron 25.0%
! TTGTAGTAAAATGAAGGTAA+AGG + chr4.2:83070399-83070418 MS.gene92596:intron 25.0%
!! AAATGTTTTCACAAAGTACA+CGG - chr4.2:83071594-83071613 None:intergenic 25.0%
!! ATTCTTAGGTTGTTTATTAG+TGG - chr4.2:83069651-83069670 None:intergenic 25.0%
!! CTATATAACTTGATGCTTTT+AGG + chr4.2:83070802-83070821 MS.gene92596:intron 25.0%
!! CTTAGGTTTACTTGTTAATA+AGG - chr4.2:83071878-83071897 None:intergenic 25.0%
!! GTACTTCTACTGTTTTATAA+CGG - chr4.2:83072719-83072738 None:intergenic 25.0%
!! TACTTCTACTGTTTTATAAC+GGG - chr4.2:83072718-83072737 None:intergenic 25.0%
!! TACTTGTTCTTTATTTCAAG+AGG - chr4.2:83071902-83071921 None:intergenic 25.0%
!! TTATAAAACAGTAGAAGTAC+CGG + chr4.2:83072719-83072738 MS.gene92596:CDS 25.0%
!! TTCTTAGGTTGTTTATTAGT+GGG - chr4.2:83069650-83069669 None:intergenic 25.0%
!! TTTACAACTTTTCAGAATCT+TGG + chr4.2:83069608-83069627 MS.gene92596:CDS 25.0%
!!! CTAAAAGCATCAAGTTATAT+AGG - chr4.2:83070804-83070823 None:intergenic 25.0%
!!! TAACATCCATTTTAATGTCA+CGG - chr4.2:83072350-83072369 None:intergenic 25.0%
!!! TCGCAATATAAAGGTTTTAT+AGG - chr4.2:83070460-83070479 None:intergenic 25.0%
AACCTCAAAGGGAATTAATT+GGG + chr4.2:83071424-83071443 MS.gene92596:intron 30.0%
AATGATTCACATGGATTCTT+CGG - chr4.2:83069512-83069531 None:intergenic 30.0%
ACCATCCAAAACCTTTATAA+TGG - chr4.2:83072472-83072491 None:intergenic 30.0%
AGAACTATGTTGTTAATCGT+TGG + chr4.2:83070508-83070527 MS.gene92596:intron 30.0%
CTCACCACTACATATTATTA+TGG + chr4.2:83072648-83072667 MS.gene92596:CDS 30.0%
GAAGGTTCATAATTCAAGAA+TGG - chr4.2:83070779-83070798 None:intergenic 30.0%
GAATATAAAGGAAAGTAAGG+AGG + chr4.2:83070899-83070918 MS.gene92596:intron 30.0%
GAATGGAAAGGAAAATAAGT+AGG + chr4.2:83071169-83071188 MS.gene92596:intron 30.0%
GAATTGCAATAGGAATTCAA+TGG - chr4.2:83071378-83071397 None:intergenic 30.0%
GATAAGATAAAATGCTAGCT+AGG - chr4.2:83071819-83071838 None:intergenic 30.0%
GGAAAAAGAAGAACTTTATC+AGG - chr4.2:83071357-83071376 None:intergenic 30.0%
GGAAACAAATTATAAACTGC+AGG - chr4.2:83071306-83071325 None:intergenic 30.0%
TAATTGGGTAAAAGAGAAGA+TGG + chr4.2:83071439-83071458 MS.gene92596:intron 30.0%
TACAGAAGTAAGTGAGAATT+GGG + chr4.2:83071254-83071273 MS.gene92596:intron 30.0%
TATCGAAAATGTAGTGTATC+TGG - chr4.2:83073292-83073311 None:intergenic 30.0%
TCATATCATACTATGTATCC+AGG + chr4.2:83073539-83073558 MS.gene92596:intron 30.0%
TCCAATGTAATCATAAGTGT+CGG - chr4.2:83070034-83070053 None:intergenic 30.0%
TTACAGAAGTAAGTGAGAAT+TGG + chr4.2:83071253-83071272 MS.gene92596:intron 30.0%
TTCTTGCATAATGATTCACA+TGG - chr4.2:83069521-83069540 None:intergenic 30.0%
TTTCACTTCAAGATCATCAA+GGG - chr4.2:83072952-83072971 None:intergenic 30.0%
TTTGAACTTTGAACTTGCAT+CGG + chr4.2:83070744-83070763 MS.gene92596:intron 30.0%
! AAGAGACACAATTGTGTTTT+TGG + chr4.2:83073327-83073346 MS.gene92596:intron 30.0%
! AGAGACACAATTGTGTTTTT+GGG + chr4.2:83073328-83073347 MS.gene92596:intron 30.0%
! ATACAACCAACACATTTTCT+TGG - chr4.2:83071658-83071677 None:intergenic 30.0%
! ATTATTGATATAGGTTGGGT+GGG + chr4.2:83073371-83073390 MS.gene92596:intron 30.0%
! CAGTGTAATTTTTGATGTCA+AGG - chr4.2:83073616-83073635 None:intergenic 30.0%
! CATCAAGTTATATAGGTTGA+AGG - chr4.2:83070797-83070816 None:intergenic 30.0%
! CTTCAAAATTAGAGAAGTGT+TGG + chr4.2:83073108-83073127 MS.gene92596:intron 30.0%
! GGGTTTTTGTTAAGGAAAAT+GGG + chr4.2:83069708-83069727 MS.gene92596:CDS 30.0%
! GTTTCAGTCTAGGATTATTT+GGG + chr4.2:83070533-83070552 MS.gene92596:intron 30.0%
! TATTATTGATATAGGTTGGG+TGG + chr4.2:83073370-83073389 MS.gene92596:intron 30.0%
! TCAAAAATTACACTGACTAG+TGG + chr4.2:83073621-83073640 MS.gene92596:CDS 30.0%
! TCAAAATGGGGTTTTTGTTA+AGG + chr4.2:83069700-83069719 MS.gene92596:CDS 30.0%
! TCCTGATGTAATACTTGTTT+TGG - chr4.2:83073669-83073688 None:intergenic 30.0%
! TCTTTATTTCAAGAGGTCTT+AGG - chr4.2:83071895-83071914 None:intergenic 30.0%
! TGAATATTGATGACACTGAA+TGG + chr4.2:83069549-83069568 MS.gene92596:CDS 30.0%
! TGTTTCAGTCTAGGATTATT+TGG + chr4.2:83070532-83070551 MS.gene92596:intron 30.0%
! TTCTGATTAAAGGTGTGTTT+AGG + chr4.2:83069983-83070002 MS.gene92596:intron 30.0%
! TTCTGATTTGAGTCAATTAG+AGG + chr4.2:83069814-83069833 MS.gene92596:CDS 30.0%
! TTTAAAGTGAGTCTTTGTGA+TGG - chr4.2:83071843-83071862 None:intergenic 30.0%
!! AACATCCATTTTAATGTCAC+GGG - chr4.2:83072349-83072368 None:intergenic 30.0%
!! AAGCGTTAACATTTTAGTCT+AGG + chr4.2:83070567-83070586 MS.gene92596:intron 30.0%
!! ATTGATTTGTTAGGAGATCT+TGG - chr4.2:83072813-83072832 None:intergenic 30.0%
!! TTAACATTTTAGTCTAGGCT+TGG + chr4.2:83070572-83070591 MS.gene92596:intron 30.0%
!! TTTGGTGTTTGATGATTTGA+AGG + chr4.2:83069739-83069758 MS.gene92596:CDS 30.0%
!!! TCCATTATAAAGGTTTTGGA+TGG + chr4.2:83072468-83072487 MS.gene92596:CDS 30.0%
AAAACTCAGTATGCAGTTCA+AGG - chr4.2:83070274-83070293 None:intergenic 35.0%
AAACACTCCTTAGAGTAACT+TGG + chr4.2:83072046-83072065 MS.gene92596:intron 35.0%
AAATAAGTAGGGAAATCGAG+TGG + chr4.2:83071181-83071200 MS.gene92596:intron 35.0%
AAATCAAGAGGTAAGAATCC+TGG - chr4.2:83073560-83073579 None:intergenic 35.0%
AACAATGAGCCATTAAGGTA+AGG - chr4.2:83071984-83072003 None:intergenic 35.0%
AAGACAATCTTTGCAGAAAC+CGG + chr4.2:83072396-83072415 MS.gene92596:CDS 35.0%
AAGTAAGGAGGGAAATAAAG+TGG + chr4.2:83070911-83070930 MS.gene92596:intron 35.0%
AATGTAGTGTATCTGGAAGA+CGG - chr4.2:83073285-83073304 None:intergenic 35.0%
ACCATTAGGGTCCATTATAA+AGG + chr4.2:83072458-83072477 MS.gene92596:CDS 35.0%
ACCTAAGAATTTGGATTCTG+AGG + chr4.2:83069661-83069680 MS.gene92596:CDS 35.0%
AGAGAAAGATTTCTCCTTCA+AGG + chr4.2:83071491-83071510 MS.gene92596:intron 35.0%
AGCCACTACTCATATACAAA+GGG - chr4.2:83071522-83071541 None:intergenic 35.0%
AGCTTCCTTACAATACCATT+AGG + chr4.2:83072444-83072463 MS.gene92596:CDS 35.0%
AGGAACACCAAAGATAGAAA+GGG + chr4.2:83072674-83072693 MS.gene92596:CDS 35.0%
AGTTCAAGGACCAACTAATT+TGG - chr4.2:83070260-83070279 None:intergenic 35.0%
ATAAATTGACCCCATTGTCT+TGG - chr4.2:83072763-83072782 None:intergenic 35.0%
ATAGGGTTCAACAACACTTA+AGG - chr4.2:83071402-83071421 None:intergenic 35.0%
CAATTGCAGTCGCAATATAA+AGG - chr4.2:83070469-83070488 None:intergenic 35.0%
CCAATGTAATCATAAGTGTC+GGG - chr4.2:83070033-83070052 None:intergenic 35.0%
CCTAAGAATTTGGATTCTGA+GGG + chr4.2:83069662-83069681 MS.gene92596:CDS 35.0%
CGTAAATCCCTTTCTATCTT+TGG - chr4.2:83072684-83072703 None:intergenic 35.0%
CTTTCACTTCAAGATCATCA+AGG - chr4.2:83072953-83072972 None:intergenic 35.0%
GAACCTCAAAGGGAATTAAT+TGG + chr4.2:83071423-83071442 MS.gene92596:intron 35.0%
GAAGGAGAAATCTTTCTCTT+TGG - chr4.2:83071490-83071509 None:intergenic 35.0%
GAAGTGAAAGTGATAAGCAT+TGG + chr4.2:83072963-83072982 MS.gene92596:CDS 35.0%
GAGAAAGATTTCTCCTTCAA+GGG + chr4.2:83071492-83071511 MS.gene92596:intron 35.0%
GATACTTATGGGTAGGTATT+AGG - chr4.2:83073175-83073194 None:intergenic 35.0%
GATTTGTCTCCCAAATTAGT+TGG + chr4.2:83070247-83070266 MS.gene92596:intron 35.0%
GCCAAAACAAGTATTACATC+AGG + chr4.2:83073665-83073684 MS.gene92596:CDS 35.0%
GCTTCCTTACAATACCATTA+GGG + chr4.2:83072445-83072464 MS.gene92596:CDS 35.0%
GTAATAAGTAGGAGGGAATA+GGG + chr4.2:83070973-83070992 MS.gene92596:intron 35.0%
GTTCAAGGACCAACTAATTT+GGG - chr4.2:83070259-83070278 None:intergenic 35.0%
GTTGATACCAAGTTACTCTA+AGG - chr4.2:83072056-83072075 None:intergenic 35.0%
GTTTCAAAATGCTACTCGAA+CGG + chr4.2:83070619-83070638 MS.gene92596:intron 35.0%
TAAACGGATCCTTACCTTAA+TGG + chr4.2:83071972-83071991 MS.gene92596:intron 35.0%
TAACGTGACATCTCAATTCT+CGG - chr4.2:83069946-83069965 None:intergenic 35.0%
TAATAAGTAGGAGGGAATAG+GGG + chr4.2:83070974-83070993 MS.gene92596:intron 35.0%
TACCCAATTAATTCCCTTTG+AGG - chr4.2:83071429-83071448 None:intergenic 35.0%
TAGGGTTCAACAACACTTAA+GGG - chr4.2:83071401-83071420 None:intergenic 35.0%
TGAATCATCGTTCCAAATTG+TGG + chr4.2:83070344-83070363 MS.gene92596:intron 35.0%
TGTAATAAGTAGGAGGGAAT+AGG + chr4.2:83070972-83070991 MS.gene92596:intron 35.0%
TTCACTTCAAGATCATCAAG+GGG - chr4.2:83072951-83072970 None:intergenic 35.0%
TTGTACATGAGGAATGTTGA+GGG - chr4.2:83072625-83072644 None:intergenic 35.0%
TTTCCTACACCATATAATGC+CGG - chr4.2:83072864-83072883 None:intergenic 35.0%
TTTGTACATGAGGAATGTTG+AGG - chr4.2:83072626-83072645 None:intergenic 35.0%
! AACCTCATAAGAGTGCATTA+AGG + chr4.2:83071130-83071149 MS.gene92596:intron 35.0%
! ACACCTTTAATCAGAAGTGT+CGG - chr4.2:83069979-83069998 None:intergenic 35.0%
! AGGGTCCATTATAAAGGTTT+TGG + chr4.2:83072464-83072483 MS.gene92596:CDS 35.0%
! AGTATTGGATACTTATGGGT+AGG - chr4.2:83073182-83073201 None:intergenic 35.0%
! CAATGTAATCATAAGTGTCG+GGG - chr4.2:83070032-83070051 None:intergenic 35.0%
! GAAGTCAACAAAGTTTTCAC+CGG - chr4.2:83072418-83072437 None:intergenic 35.0%
! GGGGTTTTTGTTAAGGAAAA+TGG + chr4.2:83069707-83069726 MS.gene92596:CDS 35.0%
! GTCGGTTGTATTTGTTAACA+AGG + chr4.2:83071697-83071716 MS.gene92596:intron 35.0%
! TTATTGATATAGGTTGGGTG+GGG + chr4.2:83073372-83073391 MS.gene92596:intron 35.0%
! TTGGATGGTAACTCTTTTGT+TGG + chr4.2:83072483-83072502 MS.gene92596:CDS 35.0%
!! ACCTTTATAATGGACCCTAA+TGG - chr4.2:83072462-83072481 None:intergenic 35.0%
!! GAGACACAATTGTGTTTTTG+GGG + chr4.2:83073329-83073348 MS.gene92596:intron 35.0%
!! TCTGTTAGTTTGCAGCTTAT+CGG - chr4.2:83070943-83070962 None:intergenic 35.0%
!!! AGACACAATTGTGTTTTTGG+GGG + chr4.2:83073330-83073349 MS.gene92596:intron 35.0%
!!! CTTTTAGGGTAGGATGTATT+TGG + chr4.2:83070817-83070836 MS.gene92596:intron 35.0%
!!! GGACCCCAAGTTTATTTTAA+TGG - chr4.2:83071573-83071592 None:intergenic 35.0%
!!! TAACTTGATGCTTTTAGGGT+AGG + chr4.2:83070807-83070826 MS.gene92596:intron 35.0%
!!! TGCAAGCAAGCTTTTGTTTT+TGG - chr4.2:83073712-83073731 None:intergenic 35.0%
AACGTGACATCTCAATTCTC+GGG - chr4.2:83069945-83069964 None:intergenic 40.0%
ACACAACATTGGAAAACAGG+AGG + chr4.2:83069844-83069863 MS.gene92596:CDS 40.0%
ACTGCAGGCTAATTTAAGAG+TGG - chr4.2:83071291-83071310 None:intergenic 40.0%
ACTTATGGGTAGGTATTAGG+AGG - chr4.2:83073172-83073191 None:intergenic 40.0%
AGGAGTGATTTCCAAGACAA+TGG + chr4.2:83072749-83072768 MS.gene92596:CDS 40.0%
AGGCAAGAATTAGCAGAAAG+TGG - chr4.2:83072903-83072922 None:intergenic 40.0%
AGGGGAATGAGGTTCAAAAT+GGG + chr4.2:83069687-83069706 MS.gene92596:CDS 40.0%
AGGGTTCAACAACACTTAAG+GGG - chr4.2:83071400-83071419 None:intergenic 40.0%
ATGCACCCGTGACATTAAAA+TGG + chr4.2:83072341-83072360 MS.gene92596:CDS 40.0%
CACACACAACATTGGAAAAC+AGG + chr4.2:83069841-83069860 MS.gene92596:CDS 40.0%
CACCTTAATGCACTCTTATG+AGG - chr4.2:83071135-83071154 None:intergenic 40.0%
CACTTAAGGGGAATTGCAAT+AGG - chr4.2:83071388-83071407 None:intergenic 40.0%
CAGAATCTTGGTTGTACTTG+TGG + chr4.2:83069620-83069639 MS.gene92596:CDS 40.0%
CAGGAACACCAAAGATAGAA+AGG + chr4.2:83072673-83072692 MS.gene92596:CDS 40.0%
CATTGGAAAACAGGAGGTAA+TGG + chr4.2:83069850-83069869 MS.gene92596:intron 40.0%
CCACTACTCATATACAAAGG+GGG - chr4.2:83071520-83071539 None:intergenic 40.0%
CCCGACACTTATGATTACAT+TGG + chr4.2:83070030-83070049 MS.gene92596:intron 40.0%
CCCTCAGAATCCAAATTCTT+AGG - chr4.2:83069665-83069684 None:intergenic 40.0%
CCTGCAAATTGCAAATCAAG+AGG - chr4.2:83073572-83073591 None:intergenic 40.0%
CTATGCGAGAAAGAATGGAA+AGG + chr4.2:83071157-83071176 MS.gene92596:intron 40.0%
CTTATGGGTAGGTATTAGGA+GGG - chr4.2:83073171-83073190 None:intergenic 40.0%
GAGCCACTACTCATATACAA+AGG - chr4.2:83071523-83071542 None:intergenic 40.0%
GAGTGATTTCCAAGACAATG+GGG + chr4.2:83072751-83072770 MS.gene92596:CDS 40.0%
GAGTTTGTAGAGTAAGACCA+TGG + chr4.2:83070095-83070114 MS.gene92596:intron 40.0%
GCCACTACTCATATACAAAG+GGG - chr4.2:83071521-83071540 None:intergenic 40.0%
GGAGTGATTTCCAAGACAAT+GGG + chr4.2:83072750-83072769 MS.gene92596:CDS 40.0%
GTTGTAACTGATGTAGCTGA+GGG + chr4.2:83071203-83071222 MS.gene92596:intron 40.0%
TCTATGCTTCATAGACCACA+CGG - chr4.2:83073086-83073105 None:intergenic 40.0%
TCTCGAACTCATTATTCGTC+AGG - chr4.2:83070664-83070683 None:intergenic 40.0%
TCTGATCCTATTGATCCAGA+GGG + chr4.2:83071326-83071345 MS.gene92596:intron 40.0%
TGCAGAATTAGGTGTGAACT+GGG + chr4.2:83070997-83071016 MS.gene92596:intron 40.0%
TGGACCCTAATGGTATTGTA+AGG - chr4.2:83072452-83072471 None:intergenic 40.0%
TGGTAGGTTGTCTTTCTTCT+CGG - chr4.2:83072289-83072308 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG - chr4.2:83072624-83072643 None:intergenic 40.0%
TTCGAATACGAGACTTTGAG+AGG - chr4.2:83070152-83070171 None:intergenic 40.0%
TTCGTACACATCTCAATGCA+CGG - chr4.2:83072078-83072097 None:intergenic 40.0%
! AATTACACTGACTAGTGGAC+TGG + chr4.2:83073626-83073645 MS.gene92596:CDS 40.0%
! AATTTGGATTCTGAGGGTCA+GGG + chr4.2:83069668-83069687 MS.gene92596:CDS 40.0%
! ACAGACTAGCCCACAAAAAT+TGG - chr4.2:83070186-83070205 None:intergenic 40.0%
! AGTGAGAATTGGGAGAGTTT+TGG + chr4.2:83071264-83071283 MS.gene92596:intron 40.0%
! ATCGTTGGTTGTTTCAGTCT+AGG + chr4.2:83070523-83070542 MS.gene92596:intron 40.0%
! CTCATAAGAGTGCATTAAGG+TGG + chr4.2:83071133-83071152 MS.gene92596:intron 40.0%
! GTACAAGAGTGTAGAGAACT+TGG + chr4.2:83072521-83072540 MS.gene92596:CDS 40.0%
! GTGAGAATTGGGAGAGTTTT+GGG + chr4.2:83071265-83071284 MS.gene92596:intron 40.0%
! TCTAGGCTTGGTTAGAATTC+TGG + chr4.2:83070584-83070603 MS.gene92596:intron 40.0%
! TGTGAACTGGGAGAGTTTTT+GGG + chr4.2:83071009-83071028 MS.gene92596:intron 40.0%
! TTCCCAGTGCCAATTTTTGT+GGG + chr4.2:83070174-83070193 MS.gene92596:intron 40.0%
! TTTGAGAGGAGTATACTCCT+AGG - chr4.2:83070138-83070157 None:intergenic 40.0%
!! AATTCCCTTTGAGGTTCGAT+AGG - chr4.2:83071420-83071439 None:intergenic 40.0%
!! ATTCCCTTTGAGGTTCGATA+GGG - chr4.2:83071419-83071438 None:intergenic 40.0%
!! CCTCTTGATTTGCAATTTGC+AGG + chr4.2:83073569-83073588 MS.gene92596:intron 40.0%
!! GGAAAATGGGTCGTTGTTTT+TGG + chr4.2:83069721-83069740 MS.gene92596:CDS 40.0%
!! GTTACTCTAAGGAGTGTTTG+AGG - chr4.2:83072045-83072064 None:intergenic 40.0%
!! TGTACAGCTCTGGCTTTAAT+TGG + chr4.2:83070203-83070222 MS.gene92596:intron 40.0%
AACAGCGTGTGTGTTTGTGT+AGG - chr4.2:83072103-83072122 None:intergenic 45.0%
ACTGCTGATGCAAACTGGTT+TGG - chr4.2:83072309-83072328 None:intergenic 45.0%
AGACCGGCATTATATGGTGT+AGG + chr4.2:83072858-83072877 MS.gene92596:CDS 45.0%
AGCCCACAAAAATTGGCACT+GGG - chr4.2:83070179-83070198 None:intergenic 45.0%
AGCTAGGGATGTTGCATTTC+AGG - chr4.2:83071803-83071822 None:intergenic 45.0%
ATGGAAGCCACCAAAGAACT+AGG - chr4.2:83069770-83069789 None:intergenic 45.0%
ATTTGTCAATGGCTCACGAG+AGG - chr4.2:83072247-83072266 None:intergenic 45.0%
CAGGGGAATGAGGTTCAAAA+TGG + chr4.2:83069686-83069705 MS.gene92596:CDS 45.0%
CCAAATTGTGGTCGCAATTG+TGG + chr4.2:83070356-83070375 MS.gene92596:intron 45.0%
CCACAATTGCGACCACAATT+TGG - chr4.2:83070359-83070378 None:intergenic 45.0%
CCCCCTTTGTATATGAGTAG+TGG + chr4.2:83071517-83071536 MS.gene92596:intron 45.0%
CTATGCTTCATAGACCACAC+GGG - chr4.2:83073085-83073104 None:intergenic 45.0%
CTCTGATCCTATTGATCCAG+AGG + chr4.2:83071325-83071344 MS.gene92596:intron 45.0%
CTCTGGATCAATAGGATCAG+AGG - chr4.2:83071327-83071346 None:intergenic 45.0%
CTTCAAGATCATCAAGGGGA+AGG - chr4.2:83072947-83072966 None:intergenic 45.0%
CTTTATCAGGATCAACCCTC+TGG - chr4.2:83071344-83071363 None:intergenic 45.0%
GAACCCTATCGAACCTCAAA+GGG + chr4.2:83071413-83071432 MS.gene92596:intron 45.0%
GAGGAAGTCACACACAACAT+TGG + chr4.2:83069833-83069852 MS.gene92596:CDS 45.0%
GATCAACCCTCTGGATCAAT+AGG - chr4.2:83071335-83071354 None:intergenic 45.0%
GGGGAATGAGGTTCAAAATG+GGG + chr4.2:83069688-83069707 MS.gene92596:CDS 45.0%
GGTTGTAACTGATGTAGCTG+AGG + chr4.2:83071202-83071221 MS.gene92596:intron 45.0%
GTGAAGAGACCGGCATTATA+TGG + chr4.2:83072852-83072871 MS.gene92596:CDS 45.0%
GTGCAGAATTAGGTGTGAAC+TGG + chr4.2:83070996-83071015 MS.gene92596:intron 45.0%
GTGGTCTATGCGAGAAAGAA+TGG + chr4.2:83071152-83071171 MS.gene92596:intron 45.0%
GTGGTGAGTGTTTGTACATG+AGG - chr4.2:83072636-83072655 None:intergenic 45.0%
TAACTCCACCAACATCTGCA+TGG - chr4.2:83069789-83069808 None:intergenic 45.0%
TAGAGAACTTGGACTCTTCC+TGG + chr4.2:83072532-83072551 MS.gene92596:CDS 45.0%
TAGCCCACAAAAATTGGCAC+TGG - chr4.2:83070180-83070199 None:intergenic 45.0%
TCTTGGATCCATTGCAGTCA+AGG - chr4.2:83072796-83072815 None:intergenic 45.0%
TGAACCCTATCGAACCTCAA+AGG + chr4.2:83071412-83071431 MS.gene92596:intron 45.0%
TGCAAAAGCCTTGACTGCAA+TGG + chr4.2:83072785-83072804 MS.gene92596:CDS 45.0%
TTCAACGTGACACAGATACG+AGG - chr4.2:83073518-83073537 None:intergenic 45.0%
TTGATGTCAAGGAAGCTGCA+AGG - chr4.2:83073605-83073624 None:intergenic 45.0%
! ATGCAGATGTTGGTGGAGTT+AGG + chr4.2:83069788-83069807 MS.gene92596:CDS 45.0%
! ATTTGGATTCTGAGGGTCAG+GGG + chr4.2:83069669-83069688 MS.gene92596:CDS 45.0%
! CTTCCCAGTGCCAATTTTTG+TGG + chr4.2:83070173-83070192 MS.gene92596:intron 45.0%
! GAAGGTTGTGCCTAGTTCTT+TGG + chr4.2:83069757-83069776 MS.gene92596:CDS 45.0%
! GAATTTGGATTCTGAGGGTC+AGG + chr4.2:83069667-83069686 MS.gene92596:CDS 45.0%
! GCACCGACACTTCTGATTAA+AGG + chr4.2:83069973-83069992 MS.gene92596:intron 45.0%
! GTGAACTGGGAGAGTTTTTG+GGG + chr4.2:83071010-83071029 MS.gene92596:intron 45.0%
! GTGTGAACTGGGAGAGTTTT+TGG + chr4.2:83071008-83071027 MS.gene92596:intron 45.0%
! TGCAGATGTTGGTGGAGTTA+GGG + chr4.2:83069789-83069808 MS.gene92596:CDS 45.0%
! TGGTTTGGACAACCAAACTG+TGG - chr4.2:83072600-83072619 None:intergenic 45.0%
! TTGCGACTGCAATTGCTGTT+TGG + chr4.2:83070474-83070493 MS.gene92596:intron 45.0%
!! AACAGTAGAAGTACCGGTAG+TGG + chr4.2:83072725-83072744 MS.gene92596:CDS 45.0%
!! ACAGTAGAAGTACCGGTAGT+GGG + chr4.2:83072726-83072745 MS.gene92596:CDS 45.0%
!! CTGATGCAAACTGGTTTGGT+AGG - chr4.2:83072305-83072324 None:intergenic 45.0%
!! GAGAAGTGTTGGTGTTTGAC+AGG + chr4.2:83073119-83073138 MS.gene92596:intron 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG + chr4.2:83072974-83072993 MS.gene92596:CDS 45.0%
!! GTAATCATAAGTGTCGGGGT+CGG - chr4.2:83070028-83070047 None:intergenic 45.0%
!! TGCGACTGCAATTGCTGTTT+GGG + chr4.2:83070475-83070494 MS.gene92596:intron 45.0%
AAGACGGCTGTGTCTTGAGT+TGG - chr4.2:83073269-83073288 None:intergenic 50.0%
ACCATGGAGTGTGCATGCTT+GGG + chr4.2:83070111-83070130 MS.gene92596:intron 50.0%
AGGCTAAGCTGTACTTGAGG+AGG - chr4.2:83072227-83072246 None:intergenic 50.0%
ATGTCAAGGAAGCTGCAAGG+AGG - chr4.2:83073602-83073621 None:intergenic 50.0%
CGACATCGCAACTGCAATTG+TGG - chr4.2:83070428-83070447 None:intergenic 50.0%
CTCTGACTGCTGATGCAAAC+TGG - chr4.2:83072314-83072333 None:intergenic 50.0%
CTTGGACTCTTCCTGGTGTA+CGG + chr4.2:83072539-83072558 MS.gene92596:CDS 50.0%
GAAATCACTCCTCCCACTAC+CGG - chr4.2:83072741-83072760 None:intergenic 50.0%
GACACCAGGATTGAGTAACG+CGG - chr4.2:83072574-83072593 None:intergenic 50.0%
GAGAGGCTAAGCTGTACTTG+AGG - chr4.2:83072230-83072249 None:intergenic 50.0%
GCTACTCGAACGGTAATGTC+TGG + chr4.2:83070629-83070648 MS.gene92596:intron 50.0%
GGTGGGATTTGTGAAGAGAC+CGG + chr4.2:83072842-83072861 MS.gene92596:CDS 50.0%
TTTAATTGGAGCCCCACAGG+TGG + chr4.2:83070217-83070236 MS.gene92596:intron 50.0%
! GGGAATAGGGGTGCAGAATT+AGG + chr4.2:83070986-83071005 MS.gene92596:intron 50.0%
! GGTTGTGCCTAGTTCTTTGG+TGG + chr4.2:83069760-83069779 MS.gene92596:CDS 50.0%
AAATCCCACCGTCCACCTGT+GGG - chr4.2:83070232-83070251 None:intergenic 55.0%
AGTGTGCATGCTTGGGACCT+AGG + chr4.2:83070118-83070137 MS.gene92596:intron 55.0%
CATGAGGAATGTTGAGGGGC+TGG - chr4.2:83072620-83072639 None:intergenic 55.0%
CTTCATAGACCACACGGGAG+GGG - chr4.2:83073080-83073099 None:intergenic 55.0%
GACCATGGAGTGTGCATGCT+TGG + chr4.2:83070110-83070129 MS.gene92596:intron 55.0%
GCTTCATAGACCACACGGGA+GGG - chr4.2:83073081-83073100 None:intergenic 55.0%
GGCTTCCATGCAGATGTTGG+TGG + chr4.2:83069781-83069800 MS.gene92596:CDS 55.0%
GGTGGCTTCCATGCAGATGT+TGG + chr4.2:83069778-83069797 MS.gene92596:CDS 55.0%
TACAAAGGGGGAGCCCTTGA+AGG - chr4.2:83071508-83071527 None:intergenic 55.0%
TCCCAAGCATGCACACTCCA+TGG - chr4.2:83070115-83070134 None:intergenic 55.0%
TGCTTCATAGACCACACGGG+AGG - chr4.2:83073082-83073101 None:intergenic 55.0%
TTCATAGACCACACGGGAGG+GGG - chr4.2:83073079-83073098 None:intergenic 55.0%
! GGCTTTAATTGGAGCCCCAC+AGG + chr4.2:83070214-83070233 MS.gene92596:intron 55.0%
! TTCTGAGGGTCAGGGGAATG+AGG + chr4.2:83069676-83069695 MS.gene92596:CDS 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG - chr4.2:83072615-83072634 None:intergenic 55.0%
!! GTAGAAGTACCGGTAGTGGG+AGG + chr4.2:83072729-83072748 MS.gene92596:CDS 55.0%
!! TGGGCTAGTCTGTACAGCTC+TGG + chr4.2:83070193-83070212 MS.gene92596:intron 55.0%
AATCCCACCGTCCACCTGTG+GGG - chr4.2:83070231-83070250 None:intergenic 60.0%
ACACGGGAGGGGGATCAAAG+AGG - chr4.2:83073069-83073088 None:intergenic 60.0%
ATTGGAGCCCCACAGGTGGA+CGG + chr4.2:83070221-83070240 MS.gene92596:intron 60.0%
CAAATCCCACCGTCCACCTG+TGG - chr4.2:83070233-83070252 None:intergenic 60.0%
CCAAACTGTGGTGCGACACC+AGG - chr4.2:83072588-83072607 None:intergenic 60.0%
CGCTCCGCGTTACTCAATCC+TGG + chr4.2:83072567-83072586 MS.gene92596:CDS 60.0%
TCTTTGATCCCCCTCCCGTG+TGG + chr4.2:83073068-83073087 MS.gene92596:intron 60.0%
!! CCTGGTGTCGCACCACAGTT+TGG + chr4.2:83072585-83072604 MS.gene92596:CDS 60.0%
GAGCCCCACAGGTGGACGGT+GGG + chr4.2:83070225-83070244 MS.gene92596:intron 70.0%
GGAGCGCGAGTCCGTACACC+AGG - chr4.2:83072553-83072572 None:intergenic 70.0%
GGAGCCCCACAGGTGGACGG+TGG + chr4.2:83070224-83070243 MS.gene92596:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 83069497 83073746 83069497 ID=MS.gene92596
chr4.2 mRNA 83069497 83073746 83069497 ID=MS.gene92596.t1;Parent=MS.gene92596
chr4.2 exon 83069497 83069865 83069497 ID=MS.gene92596.t1.exon1;Parent=MS.gene92596.t1
chr4.2 CDS 83069497 83069865 83069497 ID=cds.MS.gene92596.t1;Parent=MS.gene92596.t1
chr4.2 exon 83072216 83072995 83072216 ID=MS.gene92596.t1.exon2;Parent=MS.gene92596.t1
chr4.2 CDS 83072216 83072995 83072216 ID=cds.MS.gene92596.t1;Parent=MS.gene92596.t1
chr4.2 exon 83073591 83073746 83073591 ID=MS.gene92596.t1.exon3;Parent=MS.gene92596.t1
chr4.2 CDS 83073591 83073746 83073591 ID=cds.MS.gene92596.t1;Parent=MS.gene92596.t1
Gene Sequence

>MS.gene92596

ATGTTGTTGAATCCGAAGAATCCATGTGAATCATTATGCAAGAAACTTTTCTTGAATATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATGCTTGCAACAAGTTTACAACTTTTCAGAATCTTGGTTGTACTTGTGGAAAACCCACTAATAAACAACCTAAGAATTTGGATTCTGAGGGTCAGGGGAATGAGGTTCAAAATGGGGTTTTTGTTAAGGAAAATGGGTCGTTGTTTTTGGTGTTTGATGATTTGAAGGTTGTGCCTAGTTCTTTGGTGGCTTCCATGCAGATGTTGGTGGAGTTAGGGTATTCTGATTTGAGTCAATTAGAGGAAGTCACACACAACATTGGAAAACAGGAGGTAATGGTGTTGTGTTTTGCAATATGTATTTATCTCACTTTTTTCTTTTTCTCTTTCATTTCGAGTTTTGAGTAAACCCGAGAATTGAGATGTCACGTTACTCTGTTGCACCGACACTTCTGATTAAAGGTGTGTTTAGGTGTCTAACACATGTCGTGTCCGACCCCGACACTTATGATTACATTGGATTATGTCATTTTCTCATAATTTTATTGACTTCATAATATGTGAGTTTGTAGAGTAAGACCATGGAGTGTGCATGCTTGGGACCTAGGAGTATACTCCTCTCAAAGTCTCGTATTCGAATCTTCCCAGTGCCAATTTTTGTGGGCTAGTCTGTACAGCTCTGGCTTTAATTGGAGCCCCACAGGTGGACGGTGGGATTTGTCTCCCAAATTAGTTGGTCCTTGAACTGCATACTGAGTTTTGAAAAAAAAAACTGTAGGTTAAGAAAATTCAAAAAAAATATTTGAAACTATGAATCATCGTTCCAAATTGTGGTCGCAATTGTGGCTGCGATGCGAACCTTGATATTGTAGTAAAATGAAGGTAAAGGCAACCACAATTGCAGTTGCGATGTCGTTGCAGAGACCTATAAAACCTTTATATTGCGACTGCAATTGCTGTTTGGGACTGCAACTTAGAACTATGTTGTTAATCGTTGGTTGTTTCAGTCTAGGATTATTTGGGACTCAGATCTTAAGCGTTAACATTTTAGTCTAGGCTTGGTTAGAATTCTGGTGTTGACTATGAGTTTCAAAATGCTACTCGAACGGTAATGTCTGGATCAAAATACCTGACGAATAATGAGTTCGAGATCTTTTCTGATTTTTTTTCTTGTTTCACAAACAATTTTAACAATGTCCTATAATTTATTGTTTGAACTTTGAACTTGCATCGGAACTTTAGACCATTCTTGAATTATGAACCTTCAACCTATATAACTTGATGCTTTTAGGGTAGGATGTATTTGGCATAGTATCTGTTAAGAAGCTGATAGAAGAGCATTTATTAAGAAAGCCTATGTGAGAAAGAATATAAAGGAAAGTAAGGAGGGAAATAAAGTGGTAGTAACCGATAAGCTGCAAACTAACAGAAAAAGATAATGTAATAAGTAGGAGGGAATAGGGGTGCAGAATTAGGTGTGAACTGGGAGAGTTTTTGGGGCATATACTCTGAATCTTTAGATCGTACTTGAATTATGAATCTTTGTCCTAAAACTTAAGATAGTTTGTATTTGACATAGTAAGGGACATTTGTTAAGAACCTCATAAGAGTGCATTAAGGTGGTCTATGCGAGAAAGAATGGAAAGGAAAATAAGTAGGGAAATCGAGTGGTTGTAACTGATGTAGCTGAGGGTAACAGAATGTAATAAGTAAGGGACTCTTACAGAAGTAAGTGAGAATTGGGAGAGTTTTGGGCCACTCTTAAATTAGCCTGCAGTTTATAATTTGTTTCCTCTGATCCTATTGATCCAGAGGGTTGATCCTGATAAAGTTCTTCTTTTTCCATTGAATTCCTATTGCAATTCCCCTTAAGTGTTGTTGAACCCTATCGAACCTCAAAGGGAATTAATTGGGTAAAAGAGAAGATGGTTTTTACTGATTGAATTAAACAAAACCAAAGAGAAAGATTTCTCCTTCAAGGGCTCCCCCTTTGTATATGAGTAGTGGCTCTCGCTTTTTGATCAATACTAACATTTGCCATTAAAATAAACTTGGGGTCCGTGTACTTTGTGAAAACATTTACTATTTTCATTTCCTAAAATGTGTTAGTTGTATTTATTAACCAAGAAAATGTGTTGGTTGTATTTATTAACAAGGAAAATGTGTCGGTTGTATTTGTTAACAAGGAAAAAAAGAATCTTGAATTAAACAATTGTCTTGCATTTCAAGAAACAATGAAAATATCGAAAGCACTATTTTCATTATTTCCTGAAATGCAACATCCCTAGCTAGCATTTTATCTTATCTCCATCACAAAGACTCACTTTAAAAGTCTTTTTTCTCCTTATTAACAAGTAAACCTAAGACCTCTTGAAATAAAGAACAAGTAAAACTAACACAAATTCTATAAAATGAAAATAGAAAATGGTTTCACAAAATTAAACGGATCCTTACCTTAATGGCTCATTGTTAAATTAGTGTTTTTGTCATTGGCTTCAGACGAATGTTTCCTCAAACACTCCTTAGAGTAACTTGGTATCAACCGTGCATTGAGATGTGTACGAACACCTACACAAACACACACGCTGTTATTCTTACCGTTTCGTTTTAACATCTTGTATATATGCCAAGTAATGTAAACTTGTTTGTGAAATATTTTAACAAATACAATTTTGATGTACAGATGTTGAACCTCCTCAAGTACAGCTTAGCCTCTCGTGAGCCATTGACAAATACAATTTTGAAAAGCAGCTCCGAGAAGAAAGACAACCTACCAAACCAGTTTGCATCAGCAGTCAGAGTAAAAACATGCACCCGTGACATTAAAATGGATGTTAAGCTAGTGCGAAGTAAATCTCAGAAAAAGACAATCTTTGCAGAAACCGGTGAAAACTTTGTTGACTTCATGTTTAGCTTCCTTACAATACCATTAGGGTCCATTATAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGAACTTGGACTCTTCCTGGTGTACGGACTCGCGCTCCGCGTTACTCAATCCTGGTGTCGCACCACAGTTTGGTTGTCCAAACCAGCCCCTCAACATTCCTCATGTACAAACACTCACCACTACATATTATTATGGTACAGGAACACCAAAGATAGAAAGGGATTTACGCTATAGTAGTGCCCGTTATAAAACAGTAGAAGTACCGGTAGTGGGAGGAGTGATTTCCAAGACAATGGGGTCAATTTATAATGCAAAAGCCTTGACTGCAATGGATCCAAGATCTCCTAACAAATCAATTAAAAATGTGGTGGGATTTGTGAAGAGACCGGCATTATATGGTGTAGGAAATGATCTAAAAGTAAAACCACTTTCTGCTAATTCTTGCCTTTCATATTTGAAAGAATTAAGCCTTCCCCTTGATGATCTTGAAGTGAAAGTGATAAGCATTGGTGAAGCTGAGGTAAAGTGACTACTATTACTAAACTTATAATTTTTTTTCCTTTTGTTTATTTGTTGTTCTGAGTTTTTAGCCTCTTTGATCCCCCTCCCGTGTGGTCTATGAAGCATAGATACTTCAAAATTAGAGAAGTGTTGGTGTTTGACAGGTATGTGATACTGATACGCATCACACACCCTCCTAATACCTACCCATAAGTATCCAATACTTTTATTGATTCTTTTTAAAAATATTTTCATTGATACTTCTCAAATACATCTTCAATACTTCTTACCAACTCAAGACACAGCCGTCTTCCAGATACACTACATTTTCGATATGCTTTACGAACTAAAAGAGACACAATTGTGTTTTTGGGGGCACATTCTTCGTAGAAATATTATTGATATAGGTTGGGTGGGGTAATTATATATATATATATATGTAACTATGCTTACATGTTATGATTGCAAGTACTTTTTTGTAAATTGCGATTACAAATAAACGTTTTTGAATGCTATACATATCTTGGTTTTGTCGTATCCTCGTATCTGTGTCACGTTGAATTCATATCATACTATGTATCCAGGATTCTTACCTCTTGATTTGCAATTTGCAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAAATTACACTGACTAGTGGACTGGAAGAATTTTTTAATGTGCCAAAACAAGTATTACATCAGGAAGAAGAAGAGCATAAATCATCCAAAAACAAAAGCTTGCTTGCATATCAAGTTATCTAG
Protein sequence

>MS.gene92596.t1

MLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDACNKFTTFQNLGCTCGKPTNKQPKNLDSEGQGNEVQNGVFVKENGSLFLVFDDLKVVPSSLVASMQMLVELGYSDLSQLEEVTHNIGKQEMLNLLKYSLASREPLTNTILKSSSEKKDNLPNQFASAVRVKTCTRDIKMDVKLVRSKSQKKTIFAETGENFVDFMFSFLTIPLGSIIKVLDGNSFVGCVDNLYKSVENLDSSWCTDSRSALLNPGVAPQFGCPNQPLNIPHVQTLTTTYYYGTGTPKIERDLRYSSARYKTVEVPVVGGVISKTMGSIYNAKALTAMDPRSPNKSIKNVVGFVKRPALYGVGNDLKVKPLSANSCLSYLKELSLPLDDLEVKVISIGEAEALSLLAASLTSKITLTSGLEEFFNVPKQVLHQEEEEHKSSKNKSLLAYQVI