AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94779

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94779.t1 MTR_7g066260 90.688 494 34 1 1 482 1 494 0.0 920
MS.gene94779.t1 MTR_7g066290 64.871 464 120 4 1 451 1 434 0.0 560
MS.gene94779.t1 MTR_7g066360 63.179 497 152 9 1 482 1 481 0.0 552
MS.gene94779.t1 MTR_7g066340 57.113 485 175 7 9 477 6 473 1.14e-176 504
MS.gene94779.t1 MTR_7g066570 57.570 502 165 11 1 464 1 492 2.57e-175 504
MS.gene94779.t1 MTR_1g041315 56.893 457 165 7 3 434 2 451 7.54e-167 480
MS.gene94779.t1 MTR_7g066350 60.265 453 151 10 11 446 5 445 5.71e-166 477
MS.gene94779.t1 MTR_7g012680 55.699 465 180 8 3 456 2 451 4.07e-163 469
MS.gene94779.t1 MTR_7g066400 52.495 461 159 8 11 446 8 433 2.44e-153 444
MS.gene94779.t1 MTR_7g058710 50.701 499 175 13 1 450 1 477 9.79e-146 426
MS.gene94779.t1 MTR_7g066310 52.677 467 153 9 12 477 4 403 1.39e-144 420
MS.gene94779.t1 MTR_7g066580 50.104 479 164 14 21 456 1 447 3.70e-136 400
MS.gene94779.t1 MTR_1g014060 48.409 440 154 8 28 456 13 390 2.18e-122 363
MS.gene94779.t1 MTR_7g058700 48.344 453 143 9 27 450 531 921 4.27e-118 369
MS.gene94779.t1 MTR_7g066430 43.121 487 221 11 15 450 4 485 4.83e-117 353
MS.gene94779.t1 MTR_7g066430 25.630 238 153 7 5 223 247 479 3.10e-11 65.9
MS.gene94779.t1 MTR_2g029400 44.050 479 146 11 6 440 5 405 3.05e-112 338
MS.gene94779.t1 MTR_7g066280 47.597 437 149 12 94 477 1 410 3.21e-112 338
MS.gene94779.t1 MTR_7g066280 25.581 258 128 10 11 223 146 384 1.57e-11 66.6
MS.gene94779.t1 MTR_7g066410 40.430 512 230 12 10 450 5 512 1.04e-107 330
MS.gene94779.t1 MTR_7g066410 26.860 242 149 8 2 223 273 506 1.04e-12 70.5
MS.gene94779.t1 MTR_7g066480 43.326 457 195 11 14 453 15 424 2.42e-99 305
MS.gene94779.t1 MTR_7g062300 40.748 481 235 9 6 448 3 471 1.29e-97 302
MS.gene94779.t1 MTR_7g063660 40.084 479 226 11 14 448 8 469 3.10e-96 299
MS.gene94779.t1 MTR_7g063880 40.984 488 222 14 5 451 1 463 1.27e-95 297
MS.gene94779.t1 MTR_7g062280 39.104 491 231 12 14 450 9 485 3.45e-94 294
MS.gene94779.t1 MTR_7g066490 43.213 442 201 12 15 453 16 410 1.74e-93 290
MS.gene94779.t1 MTR_7g063820 41.260 492 219 16 9 448 3 476 3.45e-90 284
MS.gene94779.t1 MTR_7g063900 41.118 501 221 17 1 448 1 480 3.72e-90 284
MS.gene94779.t1 MTR_7g063920 38.494 478 210 8 5 448 1 428 2.69e-86 272
MS.gene94779.t1 MTR_7g063890 42.094 487 214 14 14 448 26 496 1.65e-85 272
MS.gene94779.t1 MTR_7g063830 38.412 466 224 13 11 448 6 436 1.49e-83 265
MS.gene94779.t1 MTR_3g007740 40.426 470 208 15 14 448 8 440 1.76e-82 262
MS.gene94779.t1 MTR_7g063840 38.105 475 232 13 16 448 11 465 1.60e-81 261
MS.gene94779.t1 MTR_3g065200 38.190 453 203 14 15 437 3 408 1.70e-80 258
MS.gene94779.t1 MTR_4g019310 36.747 498 236 16 12 446 5 486 6.78e-79 255
MS.gene94779.t1 MTR_7g063670 39.362 470 212 14 16 448 16 449 2.17e-75 244
MS.gene94779.t1 MTR_4g017830 34.275 531 255 18 6 462 3 513 1.71e-73 241
MS.gene94779.t1 MTR_4g019340 34.864 479 240 16 16 438 39 501 7.95e-70 231
MS.gene94779.t1 MTR_7g066680 48.161 299 94 6 207 446 38 334 1.62e-66 218
MS.gene94779.t1 MTR_4g017440 33.333 507 255 18 8 446 7 498 4.20e-65 219
MS.gene94779.t1 MTR_4g017610 32.258 496 253 16 8 446 6 475 8.21e-64 214
MS.gene94779.t1 MTR_4g017410 33.943 492 259 17 9 447 3 481 2.88e-63 214
MS.gene94779.t1 MTR_2g067310 56.044 182 36 3 20 201 53 190 8.76e-54 181
MS.gene94779.t1 MTR_4g017550 33.543 477 224 20 42 448 18 471 2.25e-53 187
MS.gene94779.t1 MTR_4g017550 29.016 193 97 7 15 186 247 420 5.84e-11 65.1
MS.gene94779.t1 MTR_7g066390 54.450 191 52 3 298 488 1 156 4.83e-53 176
MS.gene94779.t1 MTR_4g017470 30.000 530 246 15 11 469 8 483 1.94e-51 182
MS.gene94779.t1 MTR_7g063720 43.069 202 103 4 260 450 26 226 1.95e-41 148
MS.gene94779.t1 MTR_7g062270 47.126 174 84 4 16 187 11 178 4.81e-41 151
MS.gene94779.t1 MTR_8g023240 28.807 486 263 19 16 451 38 490 1.04e-35 140
MS.gene94779.t1 MTR_7g100420 36.449 321 157 11 165 450 89 397 1.31e-32 129
MS.gene94779.t1 MTR_7g100420 59.322 59 20 1 16 70 40 98 3.21e-12 68.6
MS.gene94779.t1 MTR_7g063850 35.616 219 108 6 260 450 69 282 8.46e-28 112
MS.gene94779.t1 MTR_7g063690 32.270 282 106 9 16 284 13 222 1.03e-25 105
MS.gene94779.t1 MTR_1g115440 30.588 255 131 7 5 229 1 239 7.01e-24 100
MS.gene94779.t1 MTR_1g115440 26.068 234 136 4 247 444 1 233 1.66e-15 76.6
MS.gene94779.t1 MTR_8g445860 30.932 236 125 8 241 443 1 231 3.06e-23 98.6
MS.gene94779.t1 MTR_8g445860 29.508 244 125 8 15 229 13 238 4.71e-21 92.4
MS.gene94779.t1 MTR_0150s0010 30.638 235 139 4 14 229 9 238 1.55e-21 94.0
MS.gene94779.t1 MTR_0150s0010 29.091 220 119 6 260 443 13 231 1.29e-17 82.4
MS.gene94779.t1 MTR_4g019240 40.870 115 54 5 11 115 9 119 1.37e-17 81.3
MS.gene94779.t1 MTR_1g115450 40.000 85 46 1 15 99 7 86 1.59e-14 71.2
MS.gene94779.t1 MTR_7g063760 49.206 63 31 1 387 448 3 65 8.67e-14 67.0
MS.gene94779.t1 MTR_8g445910 40.000 95 48 3 15 105 8 97 4.27e-13 69.7
MS.gene94779.t1 MTR_8g044880 42.353 85 43 2 15 98 8 87 8.66e-13 69.3
MS.gene94779.t1 MTR_1g115455 41.176 85 45 1 15 99 9 88 8.91e-13 68.2
MS.gene94779.t1 MTR_0150s0030 37.895 95 50 3 15 105 8 97 1.94e-12 66.6
MS.gene94779.t1 MTR_1g115470 41.053 95 49 2 17 109 8 97 2.46e-12 69.3
MS.gene94779.t1 MTR_8g445920 40.000 80 43 1 14 93 9 83 1.19e-11 62.0
MS.gene94779.t1 MTR_8g044890 40.000 80 43 1 14 93 9 83 1.19e-11 62.0
MS.gene94779.t1 MTR_7g063870 45.833 72 34 1 9 75 25 96 4.92e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94779.t1 AT5G43240 31.346 520 279 16 16 477 10 509 1.92e-55 193
MS.gene94779.t1 AT5G43240 31.346 520 279 16 16 477 10 509 1.92e-55 193
MS.gene94779.t1 AT5G43240 31.346 520 279 16 16 477 10 509 1.92e-55 193
MS.gene94779.t1 AT5G01130 31.808 459 267 11 15 450 9 444 7.95e-55 190
MS.gene94779.t1 AT5G01120 30.143 491 284 13 16 454 10 493 1.89e-54 191
MS.gene94779.t1 AT3G09140 29.960 504 274 13 12 451 6 494 1.43e-52 185
MS.gene94779.t1 AT5G01150 29.865 519 281 14 17 481 11 500 8.34e-50 178
MS.gene94779.t1 AT3G09140 28.383 532 274 13 12 451 6 522 1.81e-47 172
MS.gene94779.t1 AT5G01140 28.685 502 273 13 17 483 11 462 2.61e-47 171
MS.gene94779.t1 AT3G09110 33.540 322 188 9 17 322 11 322 9.02e-46 163
MS.gene94779.t1 AT3G09120 33.851 322 178 11 10 308 1 310 1.21e-42 154
MS.gene94779.t1 AT5G37320 29.388 490 278 22 10 446 1 475 4.95e-39 148
MS.gene94779.t1 AT5G43240 28.726 369 194 13 162 477 13 365 5.71e-20 92.0

Find 91 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTAAATCCTCTCTTTC+TGG 0.176316 7.1:+36237629 MS.gene94779:CDS
CTTACCATCTGATTCTAATA+AGG 0.204419 7.1:+36237259 MS.gene94779:CDS
GACAGACTTTATCTTTAAAA+AGG 0.227200 7.1:+36237184 MS.gene94779:CDS
GATATTGAAGCAGTGAAATT+TGG 0.241924 7.1:+36236576 MS.gene94779:CDS
CTAACCCAACGTTACGGTTT+AGG 0.261344 7.1:+36237225 MS.gene94779:CDS
GATTTCTATAAGTGGTTATA+CGG 0.266948 7.1:-36236800 None:intergenic
CAAAGGACCATTAACAATTA+TGG 0.282360 7.1:+36237661 MS.gene94779:CDS
TACGCCTCCATTGAGTTTCT+AGG 0.284614 7.1:-36236684 None:intergenic
CAAAGCTACTGCCGTCAAAA+TGG 0.299246 7.1:+36236851 MS.gene94779:CDS
CTGGTTCTTGAGTTCAAAAT+TGG 0.299308 7.1:-36237540 None:intergenic
CGAAGTCACCTTGAGAGTTT+TGG 0.304893 7.1:+36236434 MS.gene94779:CDS
TAGCATTTCTTTGCAGGTAT+TGG 0.307775 7.1:-36236655 None:intergenic
GTTGAGTAGCATTTCTTTGC+AGG 0.309715 7.1:-36236661 None:intergenic
TCTTGTAGGGGATATCTTAA+TGG 0.317613 7.1:+36236774 MS.gene94779:CDS
ACGTTCCAATTGGTAGTATC+TGG 0.342892 7.1:-36237559 None:intergenic
AATATCTATCAAAGCAGTTT+TGG 0.346758 7.1:-36238355 None:intergenic
CCTCCAGAAAGAGAGGATTT+AGG 0.352149 7.1:-36237632 None:intergenic
GCAAGGACTGGCAGTCTTGT+AGG 0.369793 7.1:+36236760 MS.gene94779:CDS
AAACTTGTTCCAAGATCATT+AGG 0.370772 7.1:-36236948 None:intergenic
TGAATGCAGAGAGATGTTTA+AGG 0.380741 7.1:+36237474 MS.gene94779:CDS
TTACCATCTGATTCTAATAA+GGG 0.396508 7.1:+36237260 MS.gene94779:CDS
TGTGTGATGCCTAATGATCT+TGG 0.396811 7.1:+36236939 MS.gene94779:CDS
CTATCAAACGTGCAAGTTAA+CGG 0.406251 7.1:-36237584 None:intergenic
AGCTTCTTAACCTTACCATT+AGG 0.407652 7.1:+36236522 MS.gene94779:CDS
ATCTTGATGAACACTATCTA+TGG 0.410521 7.1:+36236631 MS.gene94779:CDS
TGTTGGGAATGGCTTTGTTA+AGG 0.411761 7.1:+36236884 MS.gene94779:CDS
ATTTCCTCCACGTCATTAAG+AGG 0.412745 7.1:-36237755 None:intergenic
TCTGTCACCATAATTGTTAA+TGG 0.421237 7.1:-36237668 None:intergenic
CTTGTAGGGGATATCTTAAT+GGG 0.429632 7.1:+36236775 MS.gene94779:CDS
GATTTCTATCCTATGGCATC+TGG 0.438641 7.1:+36236381 None:intergenic
TTAACTTGCACGTTTGATAG+TGG 0.443642 7.1:+36237587 MS.gene94779:CDS
CAAGGACTGGCAGTCTTGTA+GGG 0.455929 7.1:+36236761 MS.gene94779:CDS
CCAACGTTACGGTTTAGGAT+TGG 0.461151 7.1:+36237230 MS.gene94779:CDS
CAATCCTAAACCGTAACGTT+GGG 0.469960 7.1:-36237229 None:intergenic
AAAGTTGTATATGCTGAAGC+AGG 0.470963 7.1:+36236474 MS.gene94779:CDS
TAGATATGAAACAGCGTCAA+TGG 0.470976 7.1:-36237717 None:intergenic
TTAACAAAGCCATTCCCAAC+AGG 0.471013 7.1:-36236882 None:intergenic
AAAATGGATTTGACTCCTGT+TGG 0.472696 7.1:+36236867 MS.gene94779:CDS
AGTCTAGAAATAGTTCCTAA+TGG 0.475346 7.1:-36236537 None:intergenic
GCATTTCTGATTTCTATAAG+TGG 0.478212 7.1:-36236808 None:intergenic
AAATGGATTTGACTCCTGTT+GGG 0.478666 7.1:+36236868 MS.gene94779:CDS
ACGCCTCCATTGAGTTTCTA+GGG 0.488729 7.1:-36236683 None:intergenic
AAGAACCAGATACTACCAAT+TGG 0.496758 7.1:+36237554 MS.gene94779:CDS
GTTAACGGACACGTTCCAAT+TGG 0.498290 7.1:-36237569 None:intergenic
GATTTGACTCCTGTTGGGAA+TGG 0.500795 7.1:+36236873 MS.gene94779:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.1:+36237401 MS.gene94779:CDS
TTTCGTTAGTATTGGTGTAG+AGG 0.525427 7.1:+36237778 MS.gene94779:CDS
AGGAACTATTTCTAGACTTG+TGG 0.530374 7.1:+36236542 MS.gene94779:CDS
CATTTGCAACACTCCTCCCA+TGG 0.530725 7.1:-36237393 None:intergenic
AATTATGGTGACAGACGACT+TGG 0.536351 7.1:+36237676 MS.gene94779:CDS
TATTTCTAGACTTGTGGCAA+AGG 0.538395 7.1:+36236548 MS.gene94779:CDS
TCAACATCCGCTTTGACAAA+CGG 0.540818 7.1:+36237922 MS.gene94779:CDS
AGAAATAGTTCCTAATGGTA+AGG 0.545251 7.1:-36236532 None:intergenic
ACTCAACCCTAGAAACTCAA+TGG 0.548659 7.1:+36236677 MS.gene94779:CDS
GTAATTCTAACCCAACGTTA+CGG 0.548747 7.1:+36237219 MS.gene94779:CDS
CGTTAGTATTGGTGTAGAGG+AGG 0.549157 7.1:+36237781 MS.gene94779:CDS
TTACGGTTTAGGATTGGAAA+CGG 0.560759 7.1:+36237236 MS.gene94779:CDS
ATACCCTTATTAGAATCAGA+TGG 0.560811 7.1:-36237263 None:intergenic
CACTTTGATACAGTGTACTC+AGG 0.563119 7.1:-36236602 None:intergenic
TTTCTAACATTTCCCATGGG+AGG 0.563322 7.1:+36237380 MS.gene94779:CDS
ATCAGAAATGCATCTGTGGA+AGG 0.565067 7.1:+36236820 MS.gene94779:CDS
CCAATCCTAAACCGTAACGT+TGG 0.569630 7.1:-36237230 None:intergenic
TTAAAGATAAAGTCTGTCAG+AGG 0.571141 7.1:-36237179 None:intergenic
TTAGGATCAACAAGTTTCGC+GGG 0.571667 7.1:-36237614 None:intergenic
GACATATCCTCCAGAAAGAG+AGG 0.573373 7.1:-36237639 None:intergenic
TGTATATGCTGAAGCAGGGA+AGG 0.577810 7.1:+36236479 MS.gene94779:CDS
TTCATATCTAGAAAGAATGA+AGG 0.578901 7.1:+36237730 MS.gene94779:CDS
TTTAGGATCAACAAGTTTCG+CGG 0.579897 7.1:-36237615 None:intergenic
CTTTCTGGAGGATATGTCAA+AGG 0.584702 7.1:+36237644 MS.gene94779:CDS
GGCTTCTTCAGGTTGTACAA+TGG 0.592081 7.1:-36238378 None:intergenic
TTACATTTGCTTCAGACACA+CGG 0.601680 7.1:+36236969 MS.gene94779:CDS
GTTGCAATGCCAGATGCCAT+AGG 0.603282 7.1:-36236390 None:intergenic
CTTGAGGCCGTTTGTCAAAG+CGG 0.611309 7.1:-36237929 None:intergenic
ACAGCGTCAATGGATGACAT+TGG 0.611356 7.1:-36237707 None:intergenic
GTTGTCGACCAAAACTCTCA+AGG 0.613169 7.1:-36236442 None:intergenic
TTTCCTCCACGTCATTAAGA+GGG 0.615237 7.1:-36237754 None:intergenic
ATTTGCAACACTCCTCCCAT+GGG 0.620362 7.1:-36237392 None:intergenic
GTTTGTCAAAGCGGATGTTG+AGG 0.622650 7.1:-36237920 None:intergenic
AGAAATCAGAAATGCATCTG+TGG 0.624051 7.1:+36236816 MS.gene94779:CDS
TTGCACGTAAAATACTGCGC+AGG 0.631734 7.1:-36236741 None:intergenic
AAGTTGTATATGCTGAAGCA+GGG 0.633791 7.1:+36236475 MS.gene94779:CDS
AACGGCCTCAAGCAGTACAT+AGG 0.634113 7.1:+36237940 MS.gene94779:CDS
CCTAAATCCTCTCTTTCTGG+AGG 0.635757 7.1:+36237632 MS.gene94779:CDS
GTACAACCTGAAGAAGCCAA+AGG 0.662118 7.1:+36238383 MS.gene94779:CDS
AAGGACTGGCAGTCTTGTAG+GGG 0.662149 7.1:+36236762 MS.gene94779:CDS
GAAGGTCCCTCTTAATGACG+TGG 0.665769 7.1:+36237748 MS.gene94779:CDS
ACTAACCTATGTACTGCTTG+AGG 0.678228 7.1:-36237945 None:intergenic
GCAACTGAATCACTTGAACA+AGG 0.688328 7.1:+36236408 MS.gene94779:CDS
GGTCCCTCTTAATGACGTGG+AGG 0.689620 7.1:+36237751 MS.gene94779:CDS
CAACCCTAGAAACTCAATGG+AGG 0.697460 7.1:+36236680 MS.gene94779:CDS
ACACGGACTAAATGACATAG+CGG 0.746163 7.1:+36236986 MS.gene94779:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGTTAATAATTTTTAAT+TGG + chr7.1:36238263-36238282 MS.gene94779:intron 10.0%
!! TTTAAAAAGGAAAAAATTCT+TGG + chr7.1:36237197-36237216 MS.gene94779:CDS 15.0%
!! AAAAGAAACATTCAAATCAT+TGG + chr7.1:36238007-36238026 MS.gene94779:intron 20.0%
!! ACAATATTTGATTGCATATA+TGG + chr7.1:36237863-36237882 MS.gene94779:intron 20.0%
!! TATTAAGTATTTATTTGTGC+AGG + chr7.1:36237118-36237137 MS.gene94779:intron 20.0%
!!! AAACTGCTACTTTTATAATT+CGG + chr7.1:36236907-36236926 MS.gene94779:CDS 20.0%
!!! TACTAATGTAAAGTTTTGTT+TGG - chr7.1:36237982-36238001 None:intergenic 20.0%
! AACTAAATATTGTTTCAACC+AGG + chr7.1:36238186-36238205 MS.gene94779:intron 25.0%
! AGAAATAATAAGTACTACGA+CGG - chr7.1:36238100-36238119 None:intergenic 25.0%
! GATTTCTATAAGTGGTTATA+CGG - chr7.1:36236803-36236822 None:intergenic 25.0%
! TTACCATCTGATTCTAATAA+GGG + chr7.1:36237260-36237279 MS.gene94779:CDS 25.0%
! TTCATATCTAGAAAGAATGA+AGG + chr7.1:36237730-36237749 MS.gene94779:CDS 25.0%
!! AATATCTATCAAAGCAGTTT+TGG - chr7.1:36238358-36238377 None:intergenic 25.0%
!! GACAGACTTTATCTTTAAAA+AGG + chr7.1:36237184-36237203 MS.gene94779:CDS 25.0%
!!! AACTGCTACTTTTATAATTC+GGG + chr7.1:36236908-36236927 MS.gene94779:CDS 25.0%
AAAGGAAAAAGAAGAAGCTT+GGG + chr7.1:36238401-36238420 MS.gene94779:CDS 30.0%
AACACTAGTTATCAACAAGA+AGG + chr7.1:36237022-36237041 MS.gene94779:intron 30.0%
AGAAATAGTTCCTAATGGTA+AGG - chr7.1:36236535-36236554 None:intergenic 30.0%
AGTCTAGAAATAGTTCCTAA+TGG - chr7.1:36236540-36236559 None:intergenic 30.0%
ATACCCTTATTAGAATCAGA+TGG - chr7.1:36237266-36237285 None:intergenic 30.0%
ATCTTGATGAACACTATCTA+TGG + chr7.1:36236631-36236650 MS.gene94779:CDS 30.0%
CAAAGGACCATTAACAATTA+TGG + chr7.1:36237661-36237680 MS.gene94779:CDS 30.0%
CTTACCATCTGATTCTAATA+AGG + chr7.1:36237259-36237278 MS.gene94779:CDS 30.0%
GATATTGAAGCAGTGAAATT+TGG + chr7.1:36236576-36236595 MS.gene94779:CDS 30.0%
GCATTTCTGATTTCTATAAG+TGG - chr7.1:36236811-36236830 None:intergenic 30.0%
TCAAAATTGGCAAAAATACG+AGG - chr7.1:36237530-36237549 None:intergenic 30.0%
TCTGTCACCATAATTGTTAA+TGG - chr7.1:36237671-36237690 None:intergenic 30.0%
TCTTTATATCTGCATGTACA+TGG + chr7.1:36238299-36238318 MS.gene94779:intron 30.0%
TTAAAGATAAAGTCTGTCAG+AGG - chr7.1:36237182-36237201 None:intergenic 30.0%
! AAACTTGTTCCAAGATCATT+AGG - chr7.1:36236951-36236970 None:intergenic 30.0%
! AGTTTTCTAACATTTCCCAT+GGG + chr7.1:36237377-36237396 MS.gene94779:CDS 30.0%
! GAGGAAATTTTCGTTAGTAT+TGG + chr7.1:36237770-36237789 MS.gene94779:CDS 30.0%
! TAGTTTTCTAACATTTCCCA+TGG + chr7.1:36237376-36237395 MS.gene94779:CDS 30.0%
AAAGTTGTATATGCTGAAGC+AGG + chr7.1:36236474-36236493 MS.gene94779:CDS 35.0%
AAGAACCAGATACTACCAAT+TGG + chr7.1:36237554-36237573 MS.gene94779:CDS 35.0%
AAGTTGTATATGCTGAAGCA+GGG + chr7.1:36236475-36236494 MS.gene94779:CDS 35.0%
ACTAGTTATCAACAAGAAGG+AGG + chr7.1:36237025-36237044 MS.gene94779:intron 35.0%
AGAAATCAGAAATGCATCTG+TGG + chr7.1:36236816-36236835 MS.gene94779:CDS 35.0%
AGCTTCTTAACCTTACCATT+AGG + chr7.1:36236522-36236541 MS.gene94779:CDS 35.0%
CAAAGGAAAAAGAAGAAGCT+TGG + chr7.1:36238400-36238419 MS.gene94779:CDS 35.0%
CTATCAAACGTGCAAGTTAA+CGG - chr7.1:36237587-36237606 None:intergenic 35.0%
CTTACTTCTTGATCCAACTT+CGG - chr7.1:36238158-36238177 None:intergenic 35.0%
CTTGTAGGGGATATCTTAAT+GGG + chr7.1:36236775-36236794 MS.gene94779:CDS 35.0%
GTAATTCTAACCCAACGTTA+CGG + chr7.1:36237219-36237238 MS.gene94779:CDS 35.0%
TAGATATGAAACAGCGTCAA+TGG - chr7.1:36237720-36237739 None:intergenic 35.0%
TAGCATTTCTTTGCAGGTAT+TGG - chr7.1:36236658-36236677 None:intergenic 35.0%
TCTTGTAGGGGATATCTTAA+TGG + chr7.1:36236774-36236793 MS.gene94779:CDS 35.0%
TGAATGCAGAGAGATGTTTA+AGG + chr7.1:36237474-36237493 MS.gene94779:CDS 35.0%
TGATTGCATATATGGTTGCA+GGG + chr7.1:36237871-36237890 MS.gene94779:intron 35.0%
TTACATTTGCTTCAGACACA+CGG + chr7.1:36236969-36236988 MS.gene94779:CDS 35.0%
TTGATTGCATATATGGTTGC+AGG + chr7.1:36237870-36237889 MS.gene94779:intron 35.0%
! AAAATGGATTTGACTCCTGT+TGG + chr7.1:36236867-36236886 MS.gene94779:CDS 35.0%
! AAATGGATTTGACTCCTGTT+GGG + chr7.1:36236868-36236887 MS.gene94779:CDS 35.0%
! AGGAGTCAAATCCATTTTGA+CGG - chr7.1:36236865-36236884 None:intergenic 35.0%
! CAAGCTTCTTCTTTTTCCTT+TGG - chr7.1:36238402-36238421 None:intergenic 35.0%
! CTGGTTCTTGAGTTCAAAAT+TGG - chr7.1:36237543-36237562 None:intergenic 35.0%
! TTACGGTTTAGGATTGGAAA+CGG + chr7.1:36237236-36237255 MS.gene94779:CDS 35.0%
! TTTAGGATCAACAAGTTTCG+CGG - chr7.1:36237618-36237637 None:intergenic 35.0%
!! AGGAACTATTTCTAGACTTG+TGG + chr7.1:36236542-36236561 MS.gene94779:CDS 35.0%
!! TATTTCTAGACTTGTGGCAA+AGG + chr7.1:36236548-36236567 MS.gene94779:CDS 35.0%
!! TTAACTTGCACGTTTGATAG+TGG + chr7.1:36237587-36237606 MS.gene94779:CDS 35.0%
!! TTTCGTTAGTATTGGTGTAG+AGG + chr7.1:36237778-36237797 MS.gene94779:CDS 35.0%
AACAACCATGCTTCATTCGA+TGG - chr7.1:36238242-36238261 None:intergenic 40.0%
AATTATGGTGACAGACGACT+TGG + chr7.1:36237676-36237695 MS.gene94779:CDS 40.0%
AATTGCCATCGAATGAAGCA+TGG + chr7.1:36238234-36238253 MS.gene94779:intron 40.0%
ACTAACCTATGTACTGCTTG+AGG - chr7.1:36237948-36237967 None:intergenic 40.0%
ACTCAACCCTAGAAACTCAA+TGG + chr7.1:36236677-36236696 MS.gene94779:CDS 40.0%
ATCAGAAATGCATCTGTGGA+AGG + chr7.1:36236820-36236839 MS.gene94779:CDS 40.0%
ATTGGTGTAGAGGAGGTAAA+TGG + chr7.1:36237788-36237807 MS.gene94779:intron 40.0%
ATTTCCTCCACGTCATTAAG+AGG - chr7.1:36237758-36237777 None:intergenic 40.0%
CAATCCTAAACCGTAACGTT+GGG - chr7.1:36237232-36237251 None:intergenic 40.0%
CACTTTGATACAGTGTACTC+AGG - chr7.1:36236605-36236624 None:intergenic 40.0%
GAGAACACGAATTTGAATCC+TGG - chr7.1:36238207-36238226 None:intergenic 40.0%
GATCCTAAATCCTCTCTTTC+TGG + chr7.1:36237629-36237648 MS.gene94779:CDS 40.0%
GCAACTGAATCACTTGAACA+AGG + chr7.1:36236408-36236427 MS.gene94779:CDS 40.0%
GTTGAGTAGCATTTCTTTGC+AGG - chr7.1:36236664-36236683 None:intergenic 40.0%
TATATCTGCATGTACATGGC+AGG + chr7.1:36238303-36238322 MS.gene94779:intron 40.0%
TCAACATCCGCTTTGACAAA+CGG + chr7.1:36237922-36237941 MS.gene94779:CDS 40.0%
TCCACGTTATGAAAGCAGAA+AGG + chr7.1:36238119-36238138 MS.gene94779:intron 40.0%
TCCTTTCTGCTTTCATAACG+TGG - chr7.1:36238123-36238142 None:intergenic 40.0%
TGTGTGATGCCTAATGATCT+TGG + chr7.1:36236939-36236958 MS.gene94779:CDS 40.0%
TTAACAAAGCCATTCCCAAC+AGG - chr7.1:36236885-36236904 None:intergenic 40.0%
TTAGGATCAACAAGTTTCGC+GGG - chr7.1:36237617-36237636 None:intergenic 40.0%
TTTCCTCCACGTCATTAAGA+GGG - chr7.1:36237757-36237776 None:intergenic 40.0%
TTTCTAACATTTCCCATGGG+AGG + chr7.1:36237380-36237399 MS.gene94779:CDS 40.0%
! ACACGGACTAAATGACATAG+CGG + chr7.1:36236986-36237005 MS.gene94779:CDS 40.0%
! ACGTTCCAATTGGTAGTATC+TGG - chr7.1:36237562-36237581 None:intergenic 40.0%
! AGTATTTTACGTGCAAGGAC+TGG + chr7.1:36236748-36236767 MS.gene94779:CDS 40.0%
! CTTTCTGGAGGATATGTCAA+AGG + chr7.1:36237644-36237663 MS.gene94779:CDS 40.0%
!! AAGAAGGAGGCATGTTTTCT+CGG + chr7.1:36237038-36237057 MS.gene94779:intron 40.0%
!! CTTTTTCCTTTGGCTTCTTC+AGG - chr7.1:36238392-36238411 None:intergenic 40.0%
!! TGTTGGGAATGGCTTTGTTA+AGG + chr7.1:36236884-36236903 MS.gene94779:CDS 40.0%
AAGTCCTGGTAATCCGAAGT+TGG + chr7.1:36238142-36238161 MS.gene94779:intron 45.0%
ACAGCGTCAATGGATGACAT+TGG - chr7.1:36237710-36237729 None:intergenic 45.0%
ACGCCTCCATTGAGTTTCTA+GGG - chr7.1:36236686-36236705 None:intergenic 45.0%
ATTTGCAACACTCCTCCCAT+GGG - chr7.1:36237395-36237414 None:intergenic 45.0%
CAAAGCTACTGCCGTCAAAA+TGG + chr7.1:36236851-36236870 MS.gene94779:CDS 45.0%
CAACCCTAGAAACTCAATGG+AGG + chr7.1:36236680-36236699 MS.gene94779:CDS 45.0%
CCAATCCTAAACCGTAACGT+TGG - chr7.1:36237233-36237252 None:intergenic 45.0%
CCTAAATCCTCTCTTTCTGG+AGG + chr7.1:36237632-36237651 MS.gene94779:CDS 45.0%
CCTCCAGAAAGAGAGGATTT+AGG - chr7.1:36237635-36237654 None:intergenic 45.0%
CTAACCCAACGTTACGGTTT+AGG + chr7.1:36237225-36237244 MS.gene94779:CDS 45.0%
GACATATCCTCCAGAAAGAG+AGG - chr7.1:36237642-36237661 None:intergenic 45.0%
GATTTGACTCCTGTTGGGAA+TGG + chr7.1:36236873-36236892 MS.gene94779:CDS 45.0%
GTACAACCTGAAGAAGCCAA+AGG + chr7.1:36238383-36238402 MS.gene94779:CDS 45.0%
GTTGTCGACCAAAACTCTCA+AGG - chr7.1:36236445-36236464 None:intergenic 45.0%
GTTTGTCAAAGCGGATGTTG+AGG - chr7.1:36237923-36237942 None:intergenic 45.0%
TACGCCTCCATTGAGTTTCT+AGG - chr7.1:36236687-36236706 None:intergenic 45.0%
TGAAAGCAGAAAGGAAGTCC+TGG + chr7.1:36238128-36238147 MS.gene94779:intron 45.0%
TGATCCAACTTCGGATTACC+AGG - chr7.1:36238149-36238168 None:intergenic 45.0%
TGTATATGCTGAAGCAGGGA+AGG + chr7.1:36236479-36236498 MS.gene94779:CDS 45.0%
TTGCACGTAAAATACTGCGC+AGG - chr7.1:36236744-36236763 None:intergenic 45.0%
! CCAACGTTACGGTTTAGGAT+TGG + chr7.1:36237230-36237249 MS.gene94779:CDS 45.0%
! CGAAGTCACCTTGAGAGTTT+TGG + chr7.1:36236434-36236453 MS.gene94779:CDS 45.0%
! GTTAACGGACACGTTCCAAT+TGG - chr7.1:36237572-36237591 None:intergenic 45.0%
! TGCGCAGTATTTTACGTGCA+AGG + chr7.1:36236743-36236762 MS.gene94779:CDS 45.0%
!! CGTTAGTATTGGTGTAGAGG+AGG + chr7.1:36237781-36237800 MS.gene94779:CDS 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG + chr7.1:36237401-36237420 MS.gene94779:CDS 45.0%
!! GGCTTCTTCAGGTTGTACAA+TGG - chr7.1:36238381-36238400 None:intergenic 45.0%
AACGGCCTCAAGCAGTACAT+AGG + chr7.1:36237940-36237959 MS.gene94779:CDS 50.0%
CATTTGCAACACTCCTCCCA+TGG - chr7.1:36237396-36237415 None:intergenic 50.0%
CTTGAGGCCGTTTGTCAAAG+CGG - chr7.1:36237932-36237951 None:intergenic 50.0%
GAAGGTCCCTCTTAATGACG+TGG + chr7.1:36237748-36237767 MS.gene94779:CDS 50.0%
! AAGGACTGGCAGTCTTGTAG+GGG + chr7.1:36236762-36236781 MS.gene94779:CDS 50.0%
! CAAGGACTGGCAGTCTTGTA+GGG + chr7.1:36236761-36236780 MS.gene94779:CDS 50.0%
GGTCCCTCTTAATGACGTGG+AGG + chr7.1:36237751-36237770 MS.gene94779:CDS 55.0%
! GCAAGGACTGGCAGTCTTGT+AGG + chr7.1:36236760-36236779 MS.gene94779:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 36236393 36238446 36236393 ID=MS.gene94779
chr7.1 mRNA 36236393 36238446 36236393 ID=MS.gene94779.t1;Parent=MS.gene94779
chr7.1 exon 36236393 36237010 36236393 ID=MS.gene94779.t1.exon1;Parent=MS.gene94779.t1
chr7.1 CDS 36236393 36237010 36236393 ID=cds.MS.gene94779.t1;Parent=MS.gene94779.t1
chr7.1 exon 36237140 36237802 36237140 ID=MS.gene94779.t1.exon2;Parent=MS.gene94779.t1
chr7.1 CDS 36237140 36237802 36237140 ID=cds.MS.gene94779.t1;Parent=MS.gene94779.t1
chr7.1 exon 36237892 36237961 36237892 ID=MS.gene94779.t1.exon3;Parent=MS.gene94779.t1
chr7.1 CDS 36237892 36237961 36237892 ID=cds.MS.gene94779.t1;Parent=MS.gene94779.t1
chr7.1 exon 36238325 36238446 36238325 ID=MS.gene94779.t1.exon4;Parent=MS.gene94779.t1
chr7.1 CDS 36238325 36238446 36238325 ID=cds.MS.gene94779.t1;Parent=MS.gene94779.t1
Gene Sequence

>MS.gene94779

ATGGCATCTGGCATTGCAACTGAATCACTTGAACAAGGTGACGAAGTCACCTTGAGAGTTTTGGTCGACAACGAAATAAACAAAGTTGTATATGCTGAAGCAGGGAAGGATTTTGTTGATGCTCTTTTCAGCTTCTTAACCTTACCATTAGGAACTATTTCTAGACTTGTGGCAAAGGAGTCAGATATTGAAGCAGTGAAATTTGGCAGCCTGAGTACACTGTATCAAAGTGTATCAGATCTTGATGAACACTATCTATGGTCCAATACCTGCAAAGAAATGCTACTCAACCCTAGAAACTCAATGGAGGCGTATTGTCGACAACTCAAACTGAATATTGATGACACACCTGCGCAGTATTTTACGTGCAAGGACTGGCAGTCTTGTAGGGGATATCTTAATGGGAGCCGTATAACCACTTATAGAAATCAGAAATGCATCTGTGGAAGGCTTTTGAACAAAGCTACTGCCGTCAAAATGGATTTGACTCCTGTTGGGAATGGCTTTGTTAAGGAAACTGCTACTTTTATAATTCGGGATGATCTTTGTGTGATGCCTAATGATCTTGGAACAAGTTTACATTTGCTTCAGACACACGGACTAAATGACATAGCGGATGTTGAGAAAAAAACACTAGTTATCAACAAGAAGGAGGCATGTTTTCTCGGTTTCTATATATCATCATCTTTTTTGTTGATTTTTTAGATGAATTTATATTATTCTTATATTAAGTATTTATTTGTGCAGGTAGTTGATCTTCTAAAATTGTCGTTGCTCTCAAAAACTCCTCTGACAGACTTTATCTTTAAAAAGGAAAAAATTCTTGGTAATTCTAACCCAACGTTACGGTTTAGGATTGGAAACGGCTTACCATCTGATTCTAATAAGGGTATGAAGAATATGATTGTGAAAGTATTGCTAAGAAAATCAAAAAGAAAAATTTTGTTTGCTACAGCAAATGAAGATTTTGCAGATTTTCTTTTTAGTTTTCTAACATTTCCCATGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCTTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAATGCAGAGAGATGTTTAAGGTCACAGAAACTCAAAGACAAACTAACTAAGCCTCGTATTTTTGCCAATTTTGAACTCAAGAACCAGATACTACCAATTGGAACGTGTCCGTTAACTTGCACGTTTGATAGTGGTGAACCCGCGAAACTTGTTGATCCTAAATCCTCTCTTTCTGGAGGATATGTCAAAGGACCATTAACAATTATGGTGACAGACGACTTGGTTGTAACTCCAATGTCATCCATTGACGCTGTTTCATATCTAGAAAGAATGAAGGTCCCTCTTAATGACGTGGAGGAAATTTTCGTTAGTATTGGTGTAGAGGAGGTAAATGGAGTGTGTGAGATTTTAGTTTTAATATTTCTTGTTTCAGACTCGTAACAACTAACAATATTTGATTGCATATATGGTTGCAGGGTCTCAGTATACTAAAAGCTTCGTTGACCTCAACATCCGCTTTGACAAACGGCCTCAAGCAGTACATAGGTTAGTACAGCATTCAACCAAACAAAACTTTACATTAGTATTTATAAAAGAAACATTCAAATCATTGGTTTTATACACTGCTTCTTGCGTAAAAAAAAATTATCATCAAATATTCATTTAGCATGCATATCGCATCCGTCGTAGTACTTATTATTTCTCCACGTTATGAAAGCAGAAAGGAAGTCCTGGTAATCCGAAGTTGGATCAAGAAGTAAGTAAAGTCTAACTAAATATTGTTTCAACCAGGATTCAAATTCGTGTTCTCTCAAAAAAATTGCCATCGAATGAAGCATGGTTGTTGTCAAGTTAATAATTTTTAATTGGTACTAATTACACTTCTTTATATCTGCATGTACATGGCAGGAAGTTCAACTGTTCAAGCTAATTTGTCATCCAAAACTGCTTTGATAGATATTCCATTGTACAACCTGAAGAAGCCAAAGGAAAAAGAAGAAGCTTGGGCTAATCTATGTTTTGATAACTGA
Protein sequence

>MS.gene94779.t1

MASGIATESLEQGDEVTLRVLVDNEINKVVYAEAGKDFVDALFSFLTLPLGTISRLVAKESDIEAVKFGSLSTLYQSVSDLDEHYLWSNTCKEMLLNPRNSMEAYCRQLKLNIDDTPAQYFTCKDWQSCRGYLNGSRITTYRNQKCICGRLLNKATAVKMDLTPVGNGFVKETATFIIRDDLCVMPNDLGTSLHLLQTHGLNDIADVVDLLKLSLLSKTPLTDFIFKKEKILGNSNPTLRFRIGNGLPSDSNKGMKNMIVKVLLRKSKRKILFATANEDFADFLFSFLTFPMGGVLQMLEGFSSLSCIDILYKSMTELNAERCLRSQKLKDKLTKPRIFANFELKNQILPIGTCPLTCTFDSGEPAKLVDPKSSLSGGYVKGPLTIMVTDDLVVTPMSSIDAVSYLERMKVPLNDVEEIFVSIGVEEGLSILKASLTSTSALTNGLKQYIGSSTVQANLSSKTALIDIPLYNLKKPKEKEEAWANLCFDN