AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45996

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45996.t1 MTR_7g066340 93.697 476 30 0 1 476 1 476 0.0 907
MS.gene45996.t1 MTR_7g066310 72.436 468 64 4 9 476 4 406 0.0 651
MS.gene45996.t1 MTR_7g066350 66.667 456 136 8 1 450 1 446 0.0 577
MS.gene45996.t1 MTR_7g066280 68.119 436 66 3 91 476 1 413 0.0 568
MS.gene45996.t1 MTR_1g041315 62.500 448 146 7 7 437 9 451 0.0 528
MS.gene45996.t1 MTR_7g066260 58.607 488 181 7 6 476 9 492 0.0 525
MS.gene45996.t1 MTR_7g066400 57.602 467 148 8 1 450 1 434 2.24e-172 492
MS.gene45996.t1 MTR_7g066570 56.287 501 172 9 3 468 5 493 5.33e-171 493
MS.gene45996.t1 MTR_7g066360 55.236 487 185 11 6 475 8 478 3.41e-155 450
MS.gene45996.t1 MTR_7g012680 55.085 472 172 8 3 459 5 451 2.38e-152 441
MS.gene45996.t1 MTR_7g066290 55.411 462 157 8 6 454 9 434 5.36e-151 437
MS.gene45996.t1 MTR_7g058710 49.900 499 182 12 1 453 1 477 5.10e-144 421
MS.gene45996.t1 MTR_7g066580 47.992 473 169 9 22 453 5 441 8.60e-129 381
MS.gene45996.t1 MTR_7g066580 27.692 260 130 10 6 234 209 441 5.92e-12 67.8
MS.gene45996.t1 MTR_7g066430 43.408 493 223 11 12 456 4 488 3.26e-119 358
MS.gene45996.t1 MTR_7g066430 27.801 241 142 6 9 232 254 479 2.03e-14 75.9
MS.gene45996.t1 MTR_7g058700 47.111 450 163 8 24 455 531 923 9.04e-117 365
MS.gene45996.t1 MTR_2g029400 44.770 478 152 10 1 441 1 403 1.77e-113 341
MS.gene45996.t1 MTR_7g066410 41.617 507 225 13 13 453 11 512 4.65e-111 338
MS.gene45996.t1 MTR_7g066410 30.833 240 130 8 12 232 284 506 8.78e-19 89.4
MS.gene45996.t1 MTR_7g066480 40.848 448 219 8 11 453 15 421 4.55e-97 299
MS.gene45996.t1 MTR_7g063900 41.107 506 233 17 1 462 1 485 4.40e-93 291
MS.gene45996.t1 MTR_7g062300 38.289 491 239 15 1 449 1 469 7.23e-93 290
MS.gene45996.t1 MTR_7g066490 41.071 448 204 12 12 454 16 408 1.64e-91 285
MS.gene45996.t1 MTR_7g062280 36.667 510 241 14 1 453 1 485 4.10e-91 286
MS.gene45996.t1 MTR_7g063660 36.897 477 254 11 11 453 8 471 9.61e-90 282
MS.gene45996.t1 MTR_7g063880 39.876 484 233 16 5 454 4 463 9.79e-89 279
MS.gene45996.t1 MTR_7g063830 38.612 461 246 12 5 453 3 438 1.56e-87 275
MS.gene45996.t1 MTR_7g063820 37.243 486 258 9 5 453 3 478 1.11e-86 274
MS.gene45996.t1 MTR_7g063890 38.323 501 247 14 5 462 20 501 4.50e-81 260
MS.gene45996.t1 MTR_7g063890 25.541 231 134 6 254 447 13 242 2.43e-14 75.5
MS.gene45996.t1 MTR_7g063920 34.375 480 231 8 5 453 4 430 5.17e-81 258
MS.gene45996.t1 MTR_7g063840 35.744 484 263 13 1 453 1 467 1.41e-80 258
MS.gene45996.t1 MTR_4g017830 33.714 525 274 13 1 464 1 512 4.79e-79 256
MS.gene45996.t1 MTR_4g019310 34.538 498 259 13 6 449 2 486 1.01e-78 254
MS.gene45996.t1 MTR_4g019310 29.046 241 143 9 8 235 262 487 9.64e-16 80.1
MS.gene45996.t1 MTR_3g007740 38.731 457 244 12 11 453 8 442 3.11e-78 251
MS.gene45996.t1 MTR_4g017440 33.591 518 269 14 3 459 5 508 4.29e-77 250
MS.gene45996.t1 MTR_3g065200 36.966 468 198 15 10 440 1 408 1.02e-76 248
MS.gene45996.t1 MTR_4g019340 35.356 478 247 12 13 442 39 502 1.98e-76 248
MS.gene45996.t1 MTR_4g019340 29.032 217 136 6 12 227 303 502 1.85e-15 79.0
MS.gene45996.t1 MTR_4g017410 33.015 524 273 17 5 475 2 500 9.60e-72 236
MS.gene45996.t1 MTR_1g014060 56.279 215 89 3 21 234 9 219 2.23e-71 231
MS.gene45996.t1 MTR_1g014060 48.000 175 77 2 293 453 210 384 1.22e-36 139
MS.gene45996.t1 MTR_4g017610 33.198 494 265 15 2 450 3 476 2.02e-70 232
MS.gene45996.t1 MTR_7g066680 47.492 299 94 6 215 450 37 335 3.74e-70 227
MS.gene45996.t1 MTR_7g066680 26.484 219 142 7 6 217 80 286 3.22e-11 65.1
MS.gene45996.t1 MTR_7g063670 35.076 459 265 9 8 453 13 451 2.07e-67 223
MS.gene45996.t1 MTR_4g017470 30.189 530 263 11 1 468 1 485 7.25e-62 209
MS.gene45996.t1 MTR_4g017550 30.962 478 237 17 41 451 20 471 3.34e-50 178
MS.gene45996.t1 MTR_4g017550 26.971 241 134 7 12 231 247 466 1.54e-15 79.3
MS.gene45996.t1 MTR_7g066390 53.165 158 46 1 304 461 1 130 6.17e-45 154
MS.gene45996.t1 MTR_7g062270 41.935 186 100 4 1 184 1 180 6.60e-36 137
MS.gene45996.t1 MTR_7g063720 36.493 211 119 4 257 453 17 226 4.84e-34 128
MS.gene45996.t1 MTR_7g063720 27.778 234 135 9 3 232 17 220 1.14e-16 79.7
MS.gene45996.t1 MTR_2g067310 41.579 190 70 3 7 196 42 190 7.76e-30 117
MS.gene45996.t1 MTR_8g023240 24.900 502 303 15 13 471 38 508 2.15e-26 112
MS.gene45996.t1 MTR_7g100420 32.743 339 177 11 147 453 78 397 2.51e-26 110
MS.gene45996.t1 MTR_7g100420 50.649 77 32 2 13 83 40 116 7.88e-12 67.4
MS.gene45996.t1 MTR_1g115440 33.200 250 137 9 5 238 4 239 4.72e-26 106
MS.gene45996.t1 MTR_7g063850 29.431 299 160 8 186 453 4 282 9.76e-26 107
MS.gene45996.t1 MTR_8g445860 30.453 243 148 7 4 236 5 236 2.94e-24 101
MS.gene45996.t1 MTR_8g445860 29.911 224 116 6 261 446 11 231 6.43e-20 89.4
MS.gene45996.t1 MTR_7g063690 30.108 279 125 8 13 290 13 222 2.42e-23 99.0
MS.gene45996.t1 MTR_0150s0010 29.675 246 151 7 5 238 3 238 7.90e-21 91.7
MS.gene45996.t1 MTR_0150s0010 29.515 227 116 5 261 446 8 231 2.12e-19 87.8
MS.gene45996.t1 MTR_4g019330 33.696 184 82 7 277 453 32 182 2.14e-16 77.8
MS.gene45996.t1 MTR_1g115455 27.778 252 146 8 5 239 2 234 1.18e-15 76.6
MS.gene45996.t1 MTR_4g019240 40.777 103 53 3 3 97 4 106 3.39e-15 74.3
MS.gene45996.t1 MTR_7g063760 46.970 66 34 1 389 453 2 67 6.58e-13 64.3
MS.gene45996.t1 MTR_1g115450 39.326 89 49 1 7 95 2 85 6.73e-13 66.2
MS.gene45996.t1 MTR_1g115470 40.678 118 55 5 1 115 1 106 1.71e-12 69.7
MS.gene45996.t1 MTR_0150s0030 38.043 92 51 2 6 96 2 88 1.75e-12 67.0
MS.gene45996.t1 MTR_8g044880 38.144 97 54 2 6 101 2 93 3.72e-12 67.0
MS.gene45996.t1 MTR_8g445910 39.130 92 50 2 6 96 2 88 1.30e-11 65.5
MS.gene45996.t1 MTR_7g063870 54.545 55 25 0 6 60 25 79 2.66e-11 64.3
MS.gene45996.t1 MTR_8g445920 39.535 86 47 1 5 90 3 83 8.58e-11 59.3
MS.gene45996.t1 MTR_8g044890 39.535 86 47 1 5 90 3 83 8.58e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45996.t1 AT5G01120 30.196 510 297 16 13 475 10 507 2.58e-61 209
MS.gene45996.t1 AT5G01140 30.556 504 289 11 1 475 1 472 2.89e-59 202
MS.gene45996.t1 AT3G09140 31.028 506 283 15 1 453 1 493 3.71e-59 202
MS.gene45996.t1 AT5G43240 30.350 514 295 17 13 475 10 511 3.36e-57 197
MS.gene45996.t1 AT5G43240 30.350 514 295 17 13 475 10 511 3.36e-57 197
MS.gene45996.t1 AT5G43240 30.350 514 295 17 13 475 10 511 3.36e-57 197
MS.gene45996.t1 AT3G09140 29.323 532 286 15 1 453 1 521 2.53e-55 193
MS.gene45996.t1 AT5G01150 30.992 484 281 13 12 454 9 480 1.44e-53 188
MS.gene45996.t1 AT3G09110 33.022 321 204 5 12 328 9 322 9.69e-52 179
MS.gene45996.t1 AT5G01130 30.407 467 288 11 1 453 1 444 3.21e-51 180
MS.gene45996.t1 AT3G09120 31.464 321 194 8 11 317 5 313 1.50e-39 145
MS.gene45996.t1 AT3G09120 26.718 262 145 10 260 479 3 259 5.72e-13 70.1
MS.gene45996.t1 AT5G37320 26.804 485 296 15 13 453 10 479 1.35e-36 141
MS.gene45996.t1 AT5G43240 29.143 350 203 12 164 475 25 367 8.02e-25 105

Find 84 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAACACCATTAACATTTA+TGG 0.167833 7.2:-44111693 MS.gene45996:CDS
CCATTTCCTCCACGTCATTA+AGG 0.184539 7.2:+44111597 None:intergenic
TTTCTACCTTTGGCTTCTTC+AGG 0.207589 7.2:+44110686 None:intergenic
TGATCTTCTCAAATTGTCTT+TGG 0.230468 7.2:-44112191 MS.gene45996:CDS
CCAGCATATCCACCTGTAAT+AGG 0.242061 7.2:+44111713 None:intergenic
AGCTTCTTATCATTGCCTTT+AGG 0.249361 7.2:-44112817 MS.gene45996:CDS
GCTTCTTATCATTGCCTTTA+GGG 0.256901 7.2:-44112816 MS.gene45996:CDS
CTTGGTGATGTTGATATTGA+TGG 0.264784 7.2:+44112321 None:intergenic
CCTTTAGCACCACAACTCTA+AGG 0.276542 7.2:+44112896 None:intergenic
AGCAAAAGATACCTCTTTCT+TGG 0.276786 7.2:+44112303 None:intergenic
CCACCTGTAATAGGGGATTT+AGG 0.282026 7.2:+44111722 None:intergenic
GGTACTGTTTGAGTTACTTT+AGG 0.289233 7.2:-44112540 MS.gene45996:CDS
ATTGAGTAGCATTTCCTTGC+AGG 0.290117 7.2:+44112678 None:intergenic
AAGAAGCCAAAGGTAGAAAA+AGG 0.313800 7.2:-44110682 MS.gene45996:CDS
AACCAATTGGAAGTTAATAT+TGG 0.317943 7.2:-44112100 MS.gene45996:CDS
ATTCAGCGGGTGCTTATTGC+TGG 0.323973 7.2:-44112648 MS.gene45996:CDS
AAACTTGTCGTAACAACATT+TGG 0.329105 7.2:+44112397 None:intergenic
CAATTTCTTTACTCAAAATC+CGG 0.330753 7.2:+44112473 None:intergenic
TCTGTCACCATAAATGTTAA+TGG 0.349053 7.2:+44111686 None:intergenic
AATATTGAAGCAGTGAGATT+TGG 0.357605 7.2:-44112763 MS.gene45996:CDS
TTCTACCTTTGGCTTCTTCA+GGG 0.358571 7.2:+44110687 None:intergenic
GAGGAAATGGTCGTTAATAT+TGG 0.365896 7.2:-44111584 MS.gene45996:CDS
GATCCTAAATCCCCTATTAC+AGG 0.369144 7.2:-44111725 MS.gene45996:CDS
CAGCATATCCACCTGTAATA+GGG 0.383028 7.2:+44111714 None:intergenic
TGCAGGTATTAGACATGTTC+AGG 0.387295 7.2:-44110734 MS.gene45996:intron
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.2:-44111415 MS.gene45996:intron
CATGTTTATATGTGGACAAT+AGG 0.397277 7.2:-44112561 MS.gene45996:CDS
CATTTCCTCCACGTCATTAA+GGG 0.403582 7.2:+44111598 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.2:-44112376 MS.gene45996:CDS
AAAGTTCTGTTTGCTGAGGC+AGG 0.405727 7.2:-44112865 MS.gene45996:CDS
GAGTTCAGATTGAGCAGAAA+TGG 0.407484 7.2:+44111814 None:intergenic
TTTAGTTCTAAGTAACCAAT+TGG 0.411255 7.2:-44112113 MS.gene45996:CDS
CCTTAGAGTTGTGGTGCTAA+AGG 0.411974 7.2:-44112896 MS.gene45996:CDS
CCTTAATGACGTGGAGGAAA+TGG 0.412198 7.2:-44111597 MS.gene45996:CDS
GTCGGACTTTATATTTAAAA+CGG 0.412644 7.2:-44112152 MS.gene45996:CDS
AGAGGAAGAATCTGATGAAA+TGG 0.420787 7.2:-44112071 MS.gene45996:CDS
TACCAATATTAACTTCCAAT+TGG 0.431128 7.2:+44112098 None:intergenic
ATCTTGATACACAATATCTA+TGG 0.433771 7.2:-44112708 MS.gene45996:CDS
AAGATATGAAATACCATCAA+TGG 0.434003 7.2:+44111637 None:intergenic
TAAGCACCCGCTGAATTGTT+CGG 0.455019 7.2:+44112655 None:intergenic
GCAGAGGTAGTAGGACTTCA+AGG 0.456406 7.2:+44112594 None:intergenic
TAATATACTAACCAATGAAC+TGG 0.462240 7.2:+44111404 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.469659 7.2:+44111952 None:intergenic
TCAAAATCTGCCTTGACAAA+CGG 0.470384 7.2:-44111433 MS.gene45996:CDS
CCTATTACAGGTGGATATGC+TGG 0.481859 7.2:-44111713 MS.gene45996:CDS
TTCATATCTTGAAAGAATGA+AGG 0.484244 7.2:-44111624 MS.gene45996:CDS
AGCTTACAAAAGAGAATCCT+TGG 0.499942 7.2:+44111927 None:intergenic
AATTTCTTTACTCAAAATCC+GGG 0.500885 7.2:+44112474 None:intergenic
TGAGTTCAGACAAGTGTTTG+AGG 0.508556 7.2:-44111871 MS.gene45996:CDS
CTACCTTTGGCTTCTTCAGG+GGG 0.513478 7.2:+44110689 None:intergenic
CAAAGTTTCCCTTAGAGTTG+TGG 0.516766 7.2:-44112905 MS.gene45996:CDS
CACATTCTCGCAGAGGTAGT+AGG 0.523635 7.2:+44112585 None:intergenic
TTGAGCAGAAATGGTTGGAC+TGG 0.524156 7.2:+44111823 None:intergenic
TATCAACATCACCAAGAAAG+AGG 0.532453 7.2:-44112314 MS.gene45996:intron
TCTGTTTGCTGAGGCAGGGA+AGG 0.534123 7.2:-44112860 MS.gene45996:CDS
CTGGTTGAGGCCGTTTGTCA+AGG 0.537345 7.2:+44111423 None:intergenic
CCTTGCAAAACTTGTGGCTA+AGG 0.537453 7.2:-44112791 MS.gene45996:CDS
TCAGATTGAGCAGAAATGGT+TGG 0.541398 7.2:+44111818 None:intergenic
ACTCCAATGTCATCCATTGA+TGG 0.546893 7.2:-44111650 MS.gene45996:CDS
TCTACCTTTGGCTTCTTCAG+GGG 0.550005 7.2:+44110688 None:intergenic
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.2:+44112368 None:intergenic
AGTTAATATTGGTAAAGAAG+AGG 0.563830 7.2:-44112089 MS.gene45996:CDS
CTCAATCCGAACAATTCAGC+GGG 0.564495 7.2:-44112661 MS.gene45996:CDS
CTTTAGCACCACAACTCTAA+GGG 0.565677 7.2:+44112897 None:intergenic
AAGTTCTGTTTGCTGAGGCA+GGG 0.567485 7.2:-44112864 MS.gene45996:CDS
GAATGTGTCATGTTTATATG+TGG 0.574923 7.2:-44112569 MS.gene45996:CDS
AGGGACCCTTGCAAAACTTG+TGG 0.575071 7.2:-44112797 MS.gene45996:CDS
AGCATATCCACCTGTAATAG+GGG 0.575488 7.2:+44111715 None:intergenic
ATTTCCTCCACGTCATTAAG+GGG 0.575782 7.2:+44111599 None:intergenic
ACTAACCAATGAACTGGTTG+AGG 0.582536 7.2:+44111410 None:intergenic
ATATGCAACACTGCTCCTAA+GGG 0.592224 7.2:+44111953 None:intergenic
CCTAAATCCCCTATTACAGG+TGG 0.600307 7.2:-44111722 MS.gene45996:CDS
CGTTAATATTGGCCAGAAGG+AGG 0.604404 7.2:-44111573 MS.gene45996:intron
TTAAATATAAAGTCCGACAA+AGG 0.604537 7.2:+44112157 None:intergenic
TTTCTGCTCAATCTGAACTC+AGG 0.604931 7.2:-44111811 MS.gene45996:CDS
ATACCATCAATGGATGACAT+TGG 0.606080 7.2:+44111647 None:intergenic
GGTCGTTAATATTGGCCAGA+AGG 0.607810 7.2:-44111576 MS.gene45996:CDS
AAACAAAGTTCTGTTTGCTG+AGG 0.615217 7.2:-44112869 MS.gene45996:CDS
GCAGTGTTGCATATTCTCCA+AGG 0.619271 7.2:-44111944 MS.gene45996:CDS
TTTGTCGACTTGCTCAGCTG+AGG 0.622308 7.2:+44112924 None:intergenic
TCTATGGTCACACACCTGCA+AGG 0.646114 7.2:-44112692 MS.gene45996:CDS
TTTCCTCCACGTCATTAAGG+GGG 0.685681 7.2:+44111600 None:intergenic
AACATGACACATTCTCGCAG+AGG 0.696830 7.2:+44112578 None:intergenic
ACTCAATCCGAACAATTCAG+CGG 0.705686 7.2:-44112662 MS.gene45996:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATTATAATTAAAATGT+AGG + chr7.2:44112246-44112265 None:intergenic 10.0%
!!! CTTTTTTAATTTAACAATTA+AGG - chr7.2:44112530-44112549 MS.gene45996:CDS 10.0%
!!! AGTAATTTAAAATGAACAAA+AGG - chr7.2:44112740-44112759 MS.gene45996:CDS 15.0%
!!! TTATAATTGTTTTTAGGTAT+CGG + chr7.2:44111833-44111852 None:intergenic 15.0%
!! ATAAGTGTTAAATATGTTGT+TGG + chr7.2:44112414-44112433 None:intergenic 20.0%
!! ATTTGAAGAGTGATTAAAAA+TGG - chr7.2:44112367-44112386 MS.gene45996:CDS 20.0%
!! GATACCTAAAAACAATTATA+AGG - chr7.2:44111832-44111851 MS.gene45996:CDS 20.0%
!! TTTGAGTAGATTAAAATAGT+CGG + chr7.2:44112564-44112583 None:intergenic 20.0%
!!! AAAATTTGGTCTCTAAATTT+TGG + chr7.2:44112341-44112360 None:intergenic 20.0%
!!! AATAGTACTAATTTTCCATA+AGG - chr7.2:44112642-44112661 MS.gene45996:CDS 20.0%
!!! ATATTATCTTTAGAATTGAC+TGG - chr7.2:44112438-44112457 MS.gene45996:CDS 20.0%
!!! ATTTGTTATATTAAATGCAG+TGG + chr7.2:44112625-44112644 None:intergenic 20.0%
!!! TAAAGAAATTGGTTTTGTTA+AGG - chr7.2:44111145-44111164 MS.gene45996:intron 20.0%
!!! TTTGCCTTATAATTGTTTTT+AGG + chr7.2:44111839-44111858 None:intergenic 20.0%
! AAATACATACAGTTACCTTA+TGG + chr7.2:44112660-44112679 None:intergenic 25.0%
! AACCAATTGGAAGTTAATAT+TGG - chr7.2:44111506-44111525 MS.gene45996:intron 25.0%
! AAGATATGAAATACCATCAA+TGG + chr7.2:44111972-44111991 None:intergenic 25.0%
! AATTTCTTTACTCAAAATCC+GGG + chr7.2:44111135-44111154 None:intergenic 25.0%
! AGGAATCAAAAATGTATTTG+CGG - chr7.2:44111086-44111105 MS.gene45996:intron 25.0%
! AGTTAATATTGGTAAAGAAG+AGG - chr7.2:44111517-44111536 MS.gene45996:intron 25.0%
! ATCTTGATACACAATATCTA+TGG - chr7.2:44110898-44110917 MS.gene45996:intron 25.0%
! CAAATATGAAAATAGTATGC+AGG + chr7.2:44112469-44112488 None:intergenic 25.0%
! CAATTTCTTTACTCAAAATC+CGG + chr7.2:44111136-44111155 None:intergenic 25.0%
! CTTCAAATTCCTTCAAAATT+TGG + chr7.2:44112355-44112374 None:intergenic 25.0%
! GTCGGACTTTATATTTAAAA+CGG - chr7.2:44111454-44111473 MS.gene45996:CDS 25.0%
! TAATATACTAACCAATGAAC+TGG + chr7.2:44112205-44112224 None:intergenic 25.0%
! TACCAATATTAACTTCCAAT+TGG + chr7.2:44111511-44111530 None:intergenic 25.0%
! TTAAATATAAAGTCCGACAA+AGG + chr7.2:44111452-44111471 None:intergenic 25.0%
! TTCATATCTTGAAAGAATGA+AGG - chr7.2:44111982-44112001 MS.gene45996:CDS 25.0%
!! ATTTAGAGACCAAATTTTGA+AGG - chr7.2:44112343-44112362 MS.gene45996:CDS 25.0%
!! TAAGGTAACTGTATGTATTT+TGG - chr7.2:44112660-44112679 MS.gene45996:CDS 25.0%
!!! AAAAAGTGTTAGTGATGTAA+TGG + chr7.2:44112516-44112535 None:intergenic 25.0%
!!! TTTAGTTCTAAGTAACCAAT+TGG - chr7.2:44111493-44111512 MS.gene45996:intron 25.0%
AAAATGAACAAAAGGTGAGA+AGG - chr7.2:44112748-44112767 MS.gene45996:CDS 30.0%
AAACTTGTCGTAACAACATT+TGG + chr7.2:44111212-44111231 None:intergenic 30.0%
AAATGAACAAAAGGTGAGAA+GGG - chr7.2:44112749-44112768 MS.gene45996:CDS 30.0%
AATATTGAAGCAGTGAGATT+TGG - chr7.2:44110843-44110862 MS.gene45996:intron 30.0%
AGTTGTCATGAATCTAATAC+AGG + chr7.2:44112095-44112114 None:intergenic 30.0%
ATGTAGGATGAGATTATGTT+TGG + chr7.2:44112230-44112249 None:intergenic 30.0%
CAACCACATGAAATCAAATA+TGG + chr7.2:44112120-44112139 None:intergenic 30.0%
CATGTTTATATGTGGACAAT+AGG - chr7.2:44111045-44111064 MS.gene45996:intron 30.0%
CTCACTAATTCTTCAATATG+TGG - chr7.2:44111378-44111397 MS.gene45996:intron 30.0%
GAATGTGTCATGTTTATATG+TGG - chr7.2:44111037-44111056 MS.gene45996:intron 30.0%
GAGTGATTAAAAATGGAAGT+TGG - chr7.2:44112374-44112393 MS.gene45996:CDS 30.0%
TCTGTCACCATAAATGTTAA+TGG + chr7.2:44111923-44111942 None:intergenic 30.0%
TGATCTTCTCAAATTGTCTT+TGG - chr7.2:44111415-44111434 MS.gene45996:intron 30.0%
TGGAACACCATTAACATTTA+TGG - chr7.2:44111913-44111932 MS.gene45996:CDS 30.0%
! TCACCATATTTGATTTCATG+TGG - chr7.2:44112114-44112133 MS.gene45996:CDS 30.0%
!! ATGGAAGTTGGTATATTTAG+AGG - chr7.2:44112386-44112405 MS.gene45996:CDS 30.0%
!! CGGATTTTGAGTAAAGAAAT+TGG - chr7.2:44111134-44111153 MS.gene45996:intron 30.0%
!! TGGAAGTTGGTATATTTAGA+GGG - chr7.2:44112387-44112406 MS.gene45996:CDS 30.0%
!!! GATTTTTTTTCTTGAAGCTG+AGG - chr7.2:44111592-44111611 MS.gene45996:CDS 30.0%
!!! TTTTAGGTATCGGTAATATC+TGG + chr7.2:44111823-44111842 None:intergenic 30.0%
AAGAAAGTAGGAGTCATGAA+GGG - chr7.2:44112772-44112791 MS.gene45996:CDS 35.0%
AAGAAGCCAAAGGTAGAAAA+AGG - chr7.2:44112924-44112943 MS.gene45996:CDS 35.0%
AGAGGAAGAATCTGATGAAA+TGG - chr7.2:44111535-44111554 MS.gene45996:intron 35.0%
AGCAAAAGATACCTCTTTCT+TGG + chr7.2:44111306-44111325 None:intergenic 35.0%
AGCTTACAAAAGAGAATCCT+TGG + chr7.2:44111682-44111701 None:intergenic 35.0%
AGCTTCTTATCATTGCCTTT+AGG - chr7.2:44110789-44110808 MS.gene45996:intron 35.0%
ATACCATCAATGGATGACAT+TGG + chr7.2:44111962-44111981 None:intergenic 35.0%
CTTCAATATGTGGTTTGAAC+AGG - chr7.2:44111388-44111407 MS.gene45996:intron 35.0%
GAGGAAATGGTCGTTAATAT+TGG - chr7.2:44112022-44112041 MS.gene45996:CDS 35.0%
GCTTCTTATCATTGCCTTTA+GGG - chr7.2:44110790-44110809 MS.gene45996:intron 35.0%
TATCAACATCACCAAGAAAG+AGG - chr7.2:44111292-44111311 MS.gene45996:intron 35.0%
TCAAAATCTGCCTTGACAAA+CGG - chr7.2:44112173-44112192 MS.gene45996:CDS 35.0%
TGGATCTTCATATGATCCAA+GGG - chr7.2:44112680-44112699 MS.gene45996:CDS 35.0%
TTAAATCTCCTTCAGAAGCT+TGG - chr7.2:44111230-44111249 MS.gene45996:intron 35.0%
TTGGATCTTCATATGATCCA+AGG - chr7.2:44112679-44112698 MS.gene45996:CDS 35.0%
! AAACAAAGTTCTGTTTGCTG+AGG - chr7.2:44110737-44110756 MS.gene45996:intron 35.0%
! ATTTGATTTCATGTGGTTGC+AGG - chr7.2:44112121-44112140 MS.gene45996:CDS 35.0%
! GGTACTGTTTGAGTTACTTT+AGG - chr7.2:44111066-44111085 MS.gene45996:intron 35.0%
! TCAAAATCCGGGATTTTTCT+CGG + chr7.2:44111124-44111143 None:intergenic 35.0%
! TTTGATTTCATGTGGTTGCA+GGG - chr7.2:44112122-44112141 MS.gene45996:CDS 35.0%
!! AGTTTTCTCACTTTTCCCTT+AGG - chr7.2:44111638-44111657 MS.gene45996:CDS 35.0%
!! CTTGGTGATGTTGATATTGA+TGG + chr7.2:44111288-44111307 None:intergenic 35.0%
AATATGCAACACTGCTCCTA+AGG + chr7.2:44111657-44111676 None:intergenic 40.0%
ACTAACCAATGAACTGGTTG+AGG + chr7.2:44112199-44112218 None:intergenic 40.0%
ACTCAATCCGAACAATTCAG+CGG - chr7.2:44110944-44110963 MS.gene45996:intron 40.0%
ACTCCAATGTCATCCATTGA+TGG - chr7.2:44111956-44111975 MS.gene45996:CDS 40.0%
AGCATATCCACCTGTAATAG+GGG + chr7.2:44111894-44111913 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG + chr7.2:44111656-44111675 None:intergenic 40.0%
ATTGAGTAGCATTTCCTTGC+AGG + chr7.2:44110931-44110950 None:intergenic 40.0%
ATTTCCTCCACGTCATTAAG+GGG + chr7.2:44112010-44112029 None:intergenic 40.0%
CAAAGTTTCCCTTAGAGTTG+TGG - chr7.2:44110701-44110720 MS.gene45996:CDS 40.0%
CAATATGTGGTTTGAACAGG+TGG - chr7.2:44111391-44111410 MS.gene45996:intron 40.0%
CAGCATATCCACCTGTAATA+GGG + chr7.2:44111895-44111914 None:intergenic 40.0%
CATATGATCCAAGGGTAATG+TGG - chr7.2:44112688-44112707 MS.gene45996:CDS 40.0%
CATTTCCTCCACGTCATTAA+GGG + chr7.2:44112011-44112030 None:intergenic 40.0%
CTTTAGCACCACAACTCTAA+GGG + chr7.2:44110712-44110731 None:intergenic 40.0%
GAAGAAAGTAGGAGTCATGA+AGG - chr7.2:44112771-44112790 MS.gene45996:CDS 40.0%
GAGTTCAGATTGAGCAGAAA+TGG + chr7.2:44111795-44111814 None:intergenic 40.0%
GATCCTAAATCCCCTATTAC+AGG - chr7.2:44111881-44111900 MS.gene45996:CDS 40.0%
GGTCTCAAAAACTCCTTTGT+CGG - chr7.2:44111436-44111455 MS.gene45996:CDS 40.0%
TCAGATTGAGCAGAAATGGT+TGG + chr7.2:44111791-44111810 None:intergenic 40.0%
TGAGTTCAGACAAGTGTTTG+AGG - chr7.2:44111735-44111754 MS.gene45996:CDS 40.0%
TGCAGGTATTAGACATGTTC+AGG - chr7.2:44112872-44112891 MS.gene45996:CDS 40.0%
TGTTGAACCGAGAAAAATCC+CGG - chr7.2:44111114-44111133 MS.gene45996:intron 40.0%
TTATACGTGCATGTACATGC+AGG - chr7.2:44112855-44112874 MS.gene45996:CDS 40.0%
TTTCTGCTCAATCTGAACTC+AGG - chr7.2:44111795-44111814 MS.gene45996:CDS 40.0%
! CTTAGCCACAAGTTTTGCAA+GGG + chr7.2:44110817-44110836 None:intergenic 40.0%
! GAGCTTCCTTTTTCTACCTT+TGG + chr7.2:44112933-44112952 None:intergenic 40.0%
! GTTTGTCAAGGCAGATTTTG+AGG + chr7.2:44112174-44112193 None:intergenic 40.0%
! TCATGAAGGGTGTGTAATCT+TGG - chr7.2:44112785-44112804 MS.gene45996:CDS 40.0%
! TTCTACCTTTGGCTTCTTCA+GGG + chr7.2:44112922-44112941 None:intergenic 40.0%
! TTTCTACCTTTGGCTTCTTC+AGG + chr7.2:44112923-44112942 None:intergenic 40.0%
AACATGACACATTCTCGCAG+AGG + chr7.2:44111031-44111050 None:intergenic 45.0%
AGGGTAATGTGGAGTAAGGA+CGG - chr7.2:44112699-44112718 MS.gene45996:CDS 45.0%
AGGTGAGAAGGGAAGAAAGT+AGG - chr7.2:44112760-44112779 MS.gene45996:CDS 45.0%
ATTGGCCAGAAGGAGGTAAA+AGG - chr7.2:44112040-44112059 MS.gene45996:CDS 45.0%
CCACCTGTAATAGGGGATTT+AGG + chr7.2:44111887-44111906 None:intergenic 45.0%
CCAGCATATCCACCTGTAAT+AGG + chr7.2:44111896-44111915 None:intergenic 45.0%
CCATTTCCTCCACGTCATTA+AGG + chr7.2:44112012-44112031 None:intergenic 45.0%
CCTAAATCCCCTATTACAGG+TGG - chr7.2:44111884-44111903 MS.gene45996:CDS 45.0%
CCTATTACAGGTGGATATGC+TGG - chr7.2:44111893-44111912 MS.gene45996:CDS 45.0%
CCTTAATGACGTGGAGGAAA+TGG - chr7.2:44112009-44112028 MS.gene45996:CDS 45.0%
CCTTGCAAAACTTGTGGCTA+AGG - chr7.2:44110815-44110834 MS.gene45996:intron 45.0%
CCTTTAGCACCACAACTCTA+AGG + chr7.2:44110713-44110732 None:intergenic 45.0%
CGTTAATATTGGCCAGAAGG+AGG - chr7.2:44112033-44112052 MS.gene45996:CDS 45.0%
CTCAATCCGAACAATTCAGC+GGG - chr7.2:44110945-44110964 MS.gene45996:intron 45.0%
GCAGTGTTGCATATTCTCCA+AGG - chr7.2:44111662-44111681 MS.gene45996:CDS 45.0%
GGTCGTTAATATTGGCCAGA+AGG - chr7.2:44112030-44112049 MS.gene45996:CDS 45.0%
TAAGCACCCGCTGAATTGTT+CGG + chr7.2:44110954-44110973 None:intergenic 45.0%
TCCAAGGGTAATGTGGAGTA+AGG - chr7.2:44112695-44112714 MS.gene45996:CDS 45.0%
TCCTTACTCCACATTACCCT+TGG + chr7.2:44112699-44112718 None:intergenic 45.0%
TTGAGCAGAAATGGTTGGAC+TGG + chr7.2:44111786-44111805 None:intergenic 45.0%
TTGGCCAGAAGGAGGTAAAA+GGG - chr7.2:44112041-44112060 MS.gene45996:CDS 45.0%
TTTCCTCCACGTCATTAAGG+GGG + chr7.2:44112009-44112028 None:intergenic 45.0%
! AAAGTTCTGTTTGCTGAGGC+AGG - chr7.2:44110741-44110760 MS.gene45996:intron 45.0%
! AAGTTCTGTTTGCTGAGGCA+GGG - chr7.2:44110742-44110761 MS.gene45996:intron 45.0%
! AGTTTTGCAAGGGTCCCTAA+AGG + chr7.2:44110807-44110826 None:intergenic 45.0%
! CCTTAGAGTTGTGGTGCTAA+AGG - chr7.2:44110710-44110729 MS.gene45996:CDS 45.0%
! CCTTAGCCACAAGTTTTGCA+AGG + chr7.2:44110818-44110837 None:intergenic 45.0%
! TCTACCTTTGGCTTCTTCAG+GGG + chr7.2:44112921-44112940 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG + chr7.2:44111241-44111260 None:intergenic 45.0%
AACGGCCTCAACCAGTTCAT+TGG - chr7.2:44112191-44112210 MS.gene45996:CDS 50.0%
AGGGACCCTTGCAAAACTTG+TGG - chr7.2:44110809-44110828 MS.gene45996:intron 50.0%
ATTCAGCGGGTGCTTATTGC+TGG - chr7.2:44110958-44110977 MS.gene45996:intron 50.0%
CACATTCTCGCAGAGGTAGT+AGG + chr7.2:44111024-44111043 None:intergenic 50.0%
GCAGAGGTAGTAGGACTTCA+AGG + chr7.2:44111015-44111034 None:intergenic 50.0%
TCTATGGTCACACACCTGCA+AGG - chr7.2:44110914-44110933 MS.gene45996:intron 50.0%
! CACTCCCTTTTACCTCCTTC+TGG + chr7.2:44112048-44112067 None:intergenic 50.0%
! CTACCTTTGGCTTCTTCAGG+GGG + chr7.2:44112920-44112939 None:intergenic 50.0%
!! TTTGTCGACTTGCTCAGCTG+AGG + chr7.2:44110685-44110704 None:intergenic 50.0%
CTGGTTGAGGCCGTTTGTCA+AGG + chr7.2:44112186-44112205 None:intergenic 55.0%
GAAGGTCCCCCTTAATGACG+TGG - chr7.2:44112000-44112019 MS.gene45996:CDS 55.0%
! TCTGTTTGCTGAGGCAGGGA+AGG - chr7.2:44110746-44110765 MS.gene45996:intron 55.0%
GGTCCCCCTTAATGACGTGG+AGG - chr7.2:44112003-44112022 MS.gene45996:CDS 60.0%
TCGCCCCCTGAAGAAGCCAA+AGG - chr7.2:44112914-44112933 MS.gene45996:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44110669 44112959 44110669 ID=MS.gene45996
chr7.2 mRNA 44110669 44112959 44110669 ID=MS.gene45996.t1;Parent=MS.gene45996
chr7.2 exon 44112315 44112959 44112315 ID=MS.gene45996.t1.exon1;Parent=MS.gene45996.t1
chr7.2 CDS 44112315 44112959 44112315 ID=cds.MS.gene45996.t1;Parent=MS.gene45996.t1
chr7.2 exon 44111574 44112218 44111574 ID=MS.gene45996.t1.exon2;Parent=MS.gene45996.t1
chr7.2 CDS 44111574 44112218 44111574 ID=cds.MS.gene45996.t1;Parent=MS.gene45996.t1
chr7.2 exon 44111416 44111485 44111416 ID=MS.gene45996.t1.exon3;Parent=MS.gene45996.t1
chr7.2 CDS 44111416 44111485 44111416 ID=cds.MS.gene45996.t1;Parent=MS.gene45996.t1
chr7.2 exon 44110669 44110751 44110669 ID=MS.gene45996.t1.exon4;Parent=MS.gene45996.t1
chr7.2 CDS 44110669 44110751 44110669 ID=cds.MS.gene45996.t1;Parent=MS.gene45996.t1
Gene Sequence

>MS.gene45996

ATGGCTGAAAATTCCTCAGCTGAGCAAGTCGACAAAGTTTCCCTTAGAGTTGTGGTGCTAAAGGAGAAAAACAAAGTTCTGTTTGCTGAGGCAGGGAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTATCATTGCCTTTAGGGACCCTTGCAAAACTTGTGGCTAAGGACTCAAATATTGAAGCAGTGAGATTTGGCAGCATAAGCTCACTGTATCAAAGTGTGTCAGATCTTGATACACAATATCTATGGTCACACACCTGCAAGGAAATGCTACTCAATCCGAACAATTCAGCGGGTGCTTATTGCTGGAATATGAAATTAAACATTGACAATACTGAGTCCTTGAAGTCCTACTACCTCTGCGAGAATGTGTCATGTTTATATGTGGACAATAGGTACTGTTTGAGTTACTTTAGGAATCAAAAATGTATTTGCGGAAAGCTGTTGAACCGAGAAAAATCCCGGATTTTGAGTAAAGAAATTGGTTTTGTTAAGGAAATGTCAACATTTATCATATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGATGCTATTGATAAACAAACCATCAATATCAACATCACCAAGAAAGAGGTATCTTTTGCTGTTCTGTGTTTGTATGACATATTTTTTGTTGATTATTATTATTGTTTTTTCTCTCACTAATTCTTCAATATGTGGTTTGAACAGGTGGTTGATCTTCTCAAATTGTCTTTGGTCTCAAAAACTCCTTTGTCGGACTTTATATTTAAAACGGAACATTTTGTTGAAGATTTAGTTCTAAGTAACCAATTGGAAGTTAATATTGGTAAAGAAGAGGAAGAATCTGATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCGAGTAAACAGATTTTTTTTCTTGAAGCTGAGGAAGATTTTGCTGATTTTGTTTTTAGTTTTCTCACTTTTCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGATTCTCTTTTGTAAGCTGCATTGATAATTTATATAAGAGCGTGACTGAGTTGAGTTCAGACAAGTGTTTGAGGTCACAGCTTTTCAAAGACATACTAACCAGTCCAACCATTTCTGCTCAATCTGAACTCAGGAACCAGATATTACCGATACCTAAAAACAATTATAAGGCAAAAAATATGTCATACAAATTTGTTGATCCTAAATCCCCTATTACAGGTGGATATGCTGGAACACCATTAACATTTATGGTGACAGACGAATTAGTTGTGACTCCAATGTCATCCATTGATGGTATTTCATATCTTGAAAGAATGAAGGTCCCCCTTAATGACGTGGAGGAAATGGTCGTTAATATTGGCCAGAAGGAGGTAAAAGGGAGTGTGTTCGTCTTTCAGTTTAATATTTCCTGTATTAGATTCATGACAACTCACCATATTTGATTTCATGTGGTTGCAGGGTCTCAGCATACTTAGAGCTTCATTGACCTCAAAATCTGCCTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATATTAGACCAAACATAATCTCATCCTACATTTTAATTATAATAAACACAATATTAAAGTTCATCTATAAAATTCTTCAAAAATAGTCGCTTCGAACATGTTAAGTGAACTTTTGTTAACCAAAATTTAGAGACCAAATTTTGAAGGAATTTGAAGAGTGATTAAAAATGGAAGTTGGTATATTTAGAGGGACCAACAACATATTTAACACTTATTTGTATATTATCTTTAGAATTGACTGGTTGTGCCTGCATACTATTTTCATATTTGAAATACTTGTGTAAACTAACATAGCCATTACATCACTAACACTTTTTTAATTTAACAATTAAGGAGAAATTACCGACTATTTTAATCTACTCAAATGTGCTACGCAACTCATGCTTATAAAAATATTAGATGACCACTGCATTTAATATAACAAATAGTACTAATTTTCCATAAGGTAACTGTATGTATTTTGGATCTTCATATGATCCAAGGGTAATGTGGAGTAAGGACGGTTAATGTCAAGAAAATTAAGTAATTTAAAATGAACAAAAGGTGAGAAGGGAAGAAAGTAGGAGTCATGAAGGGTGTGTAATCTTGGTCACTTGTTTGTTAAATAATTTTTAATATGTGCTAACTACTTTTTTATTATACGTGCATGTACATGCAGGTATTAGACATGTTCAGGCTAATTTGTCATCTAATGCTCGCCCCCTGAAGAAGCCAAAGGTAGAAAAAGGAAGCTCGAGATAA
Protein sequence

>MS.gene45996.t1

MAENSSAEQVDKVSLRVVVLKEKNKVLFAEAGKDFVDVLLSFLSLPLGTLAKLVAKDSNIEAVRFGSISSLYQSVSDLDTQYLWSHTCKEMLLNPNNSAGAYCWNMKLNIDNTESLKSYYLCENVSCLYVDNRYCLSYFRNQKCICGKLLNREKSRILSKEIGFVKEMSTFIISDDLYVMPNVVTTSLNLLQKLGVNDIDAIDKQTININITKKEVVDLLKLSLVSKTPLSDFIFKTEHFVEDLVLSNQLEVNIGKEEEESDEMVVKVLRRKSSKQIFFLEAEEDFADFVFSFLTFPLGAVLHILQGFSFVSCIDNLYKSVTELSSDKCLRSQLFKDILTSPTISAQSELRNQILPIPKNNYKAKNMSYKFVDPKSPITGGYAGTPLTFMVTDELVVTPMSSIDGISYLERMKVPLNDVEEMVVNIGQKEGLSILRASLTSKSALTNGLNQFIGIRHVQANLSSNARPLKKPKVEKGSSR