AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45990.t1 MTR_7g066260 61.304 460 124 8 10 425 14 463 0.0 533
MS.gene45990.t1 MTR_7g066340 53.896 462 163 6 3 425 4 454 3.13e-157 452
MS.gene45990.t1 MTR_7g066360 56.842 475 130 11 1 425 1 450 1.45e-156 451
MS.gene45990.t1 MTR_7g066290 55.202 471 124 8 1 425 5 434 2.08e-156 449
MS.gene45990.t1 MTR_7g066350 54.626 454 147 8 10 420 8 445 6.46e-148 428
MS.gene45990.t1 MTR_7g012680 54.725 455 165 12 1 424 1 445 6.88e-144 418
MS.gene45990.t1 MTR_7g066570 51.534 489 163 11 1 424 1 480 1.25e-143 421
MS.gene45990.t1 MTR_1g041315 50.759 461 164 8 1 408 1 451 3.00e-136 400
MS.gene45990.t1 MTR_7g066310 51.537 423 154 8 10 425 6 384 2.80e-131 384
MS.gene45990.t1 MTR_7g066400 48.124 453 161 7 11 420 12 433 1.54e-130 384
MS.gene45990.t1 MTR_7g066400 29.947 187 104 7 10 192 239 402 8.29e-11 63.9
MS.gene45990.t1 MTR_7g058710 47.590 498 163 12 2 424 3 477 1.97e-130 385
MS.gene45990.t1 MTR_7g066580 49.451 455 167 11 17 421 1 442 9.30e-126 371
MS.gene45990.t1 MTR_7g066580 31.034 203 114 7 11 193 215 411 1.41e-13 72.8
MS.gene45990.t1 MTR_1g014060 46.963 428 152 11 20 424 9 384 1.16e-108 326
MS.gene45990.t1 MTR_7g066410 39.885 524 202 13 3 425 2 513 1.37e-105 322
MS.gene45990.t1 MTR_2g029400 46.137 453 157 14 1 414 1 405 6.68e-105 317
MS.gene45990.t1 MTR_7g066430 40.041 492 207 11 11 424 4 485 1.17e-104 319
MS.gene45990.t1 MTR_7g058700 45.077 457 130 8 23 424 531 921 4.18e-104 329
MS.gene45990.t1 MTR_7g066480 41.814 452 183 8 10 425 15 422 4.80e-96 295
MS.gene45990.t1 MTR_7g066280 44.554 404 143 10 90 425 1 391 2.19e-95 292
MS.gene45990.t1 MTR_7g062300 39.014 487 213 11 2 422 3 471 6.55e-93 288
MS.gene45990.t1 MTR_7g062280 39.122 501 211 11 3 425 2 486 1.12e-92 288
MS.gene45990.t1 MTR_7g063920 39.789 475 190 7 1 424 1 430 1.49e-91 283
MS.gene45990.t1 MTR_7g063880 40.900 489 199 15 1 425 1 463 6.00e-90 280
MS.gene45990.t1 MTR_7g063820 39.148 493 213 11 3 424 2 478 2.67e-88 276
MS.gene45990.t1 MTR_7g063660 36.401 489 222 9 6 425 4 472 1.01e-87 275
MS.gene45990.t1 MTR_7g066490 41.096 438 190 9 11 425 16 408 2.11e-87 272
MS.gene45990.t1 MTR_7g063830 38.166 469 213 9 3 425 2 439 2.11e-84 265
MS.gene45990.t1 MTR_3g007740 39.957 463 206 11 9 425 7 443 9.22e-82 258
MS.gene45990.t1 MTR_7g063900 38.554 498 215 11 3 425 2 483 1.35e-81 259
MS.gene45990.t1 MTR_7g063840 37.137 482 222 13 7 425 5 468 3.08e-80 255
MS.gene45990.t1 MTR_7g063670 38.178 461 214 10 12 425 16 452 1.29e-76 246
MS.gene45990.t1 MTR_4g019310 34.517 507 227 15 5 424 2 490 2.58e-74 241
MS.gene45990.t1 MTR_7g063890 38.008 492 215 12 8 425 24 499 3.98e-72 235
MS.gene45990.t1 MTR_3g065200 37.029 451 189 12 11 411 3 408 9.08e-71 230
MS.gene45990.t1 MTR_7g066680 46.557 305 95 6 176 420 38 334 1.24e-67 219
MS.gene45990.t1 MTR_7g066680 27.723 202 123 8 5 192 80 272 1.41e-11 65.9
MS.gene45990.t1 MTR_4g019340 32.636 478 230 13 12 412 39 501 9.05e-60 202
MS.gene45990.t1 MTR_4g017830 30.888 518 247 17 1 424 1 501 1.00e-59 203
MS.gene45990.t1 MTR_4g017410 30.754 491 248 19 12 425 10 485 1.55e-55 191
MS.gene45990.t1 MTR_4g017440 31.335 517 247 18 1 424 1 502 2.71e-55 191
MS.gene45990.t1 MTR_4g017610 30.785 484 234 15 14 420 16 475 5.44e-54 187
MS.gene45990.t1 MTR_7g066390 59.477 153 32 1 273 425 1 123 2.19e-50 167
MS.gene45990.t1 MTR_4g017470 28.265 513 238 14 1 425 1 471 5.72e-45 163
MS.gene45990.t1 MTR_7g063720 41.509 212 113 3 222 422 13 224 2.40e-43 152
MS.gene45990.t1 MTR_7g063720 30.811 185 109 6 11 192 23 191 3.80e-18 83.6
MS.gene45990.t1 MTR_4g017550 30.603 464 225 18 41 421 21 470 1.72e-41 153
MS.gene45990.t1 MTR_7g062270 40.838 191 104 6 1 184 1 189 1.76e-33 129
MS.gene45990.t1 MTR_8g023240 26.305 479 252 16 8 416 34 481 6.34e-29 119
MS.gene45990.t1 MTR_7g063690 32.374 278 90 6 12 259 13 222 2.13e-28 112
MS.gene45990.t1 MTR_2g067310 44.375 160 54 5 21 179 57 182 1.34e-27 110
MS.gene45990.t1 MTR_7g063850 34.081 223 113 5 232 425 66 283 2.13e-26 108
MS.gene45990.t1 MTR_7g100420 30.816 331 164 7 144 424 82 397 4.89e-26 109
MS.gene45990.t1 MTR_7g100420 55.769 52 23 0 2 53 30 81 1.82e-11 65.9
MS.gene45990.t1 MTR_1g115440 29.218 243 121 4 1 197 1 238 6.59e-20 88.6
MS.gene45990.t1 MTR_8g445860 28.163 245 116 8 1 198 7 238 1.69e-18 84.7
MS.gene45990.t1 MTR_0150s0010 30.570 193 100 5 3 172 2 183 2.50e-17 81.3
MS.gene45990.t1 MTR_4g019330 32.597 181 86 5 246 422 32 180 3.89e-17 79.7
MS.gene45990.t1 MTR_4g019240 38.889 108 56 4 12 111 14 119 5.22e-16 76.3
MS.gene45990.t1 MTR_1g115450 38.947 95 49 2 1 95 1 86 1.53e-15 73.6
MS.gene45990.t1 MTR_7g063760 52.308 65 30 1 361 424 3 67 3.06e-15 70.9
MS.gene45990.t1 MTR_1g115470 41.758 91 48 1 8 98 3 88 9.37e-14 73.2
MS.gene45990.t1 MTR_1g115455 37.363 91 52 1 5 95 3 88 8.57e-13 68.2
MS.gene45990.t1 MTR_8g445920 38.462 91 51 2 3 93 2 87 2.15e-12 63.9
MS.gene45990.t1 MTR_8g044890 38.462 91 51 2 3 93 2 87 2.15e-12 63.9
MS.gene45990.t1 MTR_0150s0030 35.165 91 53 2 5 94 2 87 5.01e-12 65.5
MS.gene45990.t1 MTR_8g445910 36.264 91 52 2 5 94 2 87 3.20e-11 63.9
MS.gene45990.t1 MTR_8g044880 36.264 91 52 2 5 94 2 87 4.10e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45990.t1 AT5G01120 28.631 482 265 10 12 420 10 485 7.01e-49 174
MS.gene45990.t1 AT5G01150 30.146 481 257 14 13 425 11 480 3.71e-46 166
MS.gene45990.t1 AT5G01130 29.828 466 245 13 11 424 9 444 4.67e-45 162
MS.gene45990.t1 AT5G43240 30.470 489 251 16 12 420 10 489 8.69e-44 160
MS.gene45990.t1 AT5G43240 30.470 489 251 16 12 420 10 489 8.69e-44 160
MS.gene45990.t1 AT5G43240 30.470 489 251 16 12 420 10 489 8.69e-44 160
MS.gene45990.t1 AT3G09140 29.860 499 254 16 5 420 4 489 1.23e-42 157
MS.gene45990.t1 AT3G09110 32.710 321 171 9 13 297 11 322 2.33e-41 150
MS.gene45990.t1 AT5G01140 28.898 481 247 12 1 420 1 447 1.99e-40 150
MS.gene45990.t1 AT3G09140 28.488 516 267 16 5 420 4 517 1.69e-38 146
MS.gene45990.t1 AT3G09120 33.229 319 155 11 10 283 5 310 1.44e-32 125
MS.gene45990.t1 AT5G37320 27.406 478 258 17 21 425 19 480 1.34e-30 123
MS.gene45990.t1 AT5G43240 27.835 291 163 7 164 420 68 345 1.56e-14 75.1

Find 88 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTTGGATTGGAATAT+TGG 0.140891 7.2:+44270798 None:intergenic
GATCCCAAATCCCCTGTTTC+TGG 0.158108 7.2:-44270405 MS.gene45990:CDS
ACGTTCCACAAAGGCATTTC+TGG 0.186386 7.2:+44271212 None:intergenic
CAATTTCCTCAATGTCATTC+AGG 0.211667 7.2:+44270277 None:intergenic
GTTTCTTGACATTGCCTTTA+GGG 0.212197 7.2:-44271489 MS.gene45990:CDS
TCCTCCAGAAACAGGGGATT+TGG 0.246382 7.2:+44270401 None:intergenic
CAAGACCTCGCCACCGTCTT+TGG 0.252896 7.2:+44270437 None:intergenic
CAATGGCTTTGTTAAAGATA+TGG 0.263863 7.2:-44271152 MS.gene45990:CDS
AGTTTCTTGACATTGCCTTT+AGG 0.278405 7.2:-44271490 MS.gene45990:CDS
GCCCTTTCCAATACCAATCT+TGG 0.287710 7.2:+44270785 None:intergenic
AATATCGAAGCAATGAAATT+TGG 0.294760 7.2:-44271436 MS.gene45990:CDS
GAGGAAATTGTCGTTAATAT+TGG 0.297073 7.2:-44270264 MS.gene45990:CDS
CACAGGACCAACAACGATTA+TGG 0.311810 7.2:-44270373 MS.gene45990:CDS
TTCCAATCCAAGATTGGTAT+TGG 0.348676 7.2:-44270792 MS.gene45990:CDS
GTGACATATCCTCCAGAAAC+AGG 0.363395 7.2:+44270393 None:intergenic
AAAGCCATTGTCAAAGGAAC+TGG 0.377492 7.2:+44271165 None:intergenic
CCTCCAGAAACAGGGGATTT+GGG 0.381514 7.2:+44270402 None:intergenic
TCAACTAGAAACATTCTGTT+TGG 0.399046 7.2:-44270711 MS.gene45990:CDS
TTCTGTAATGCCTAATGATC+TGG 0.425766 7.2:-44271104 MS.gene45990:intron
TCCAAGATTGGTATTGGAAA+GGG 0.431425 7.2:-44270786 MS.gene45990:CDS
TTCCAATACCAATCTTGGAT+TGG 0.445667 7.2:+44270790 None:intergenic
ATCTTGATGGGAAATATCTA+TGG 0.446238 7.2:-44271381 MS.gene45990:CDS
TGAAGTTACATTGAAAGTTA+TGG 0.448393 7.2:-44271578 MS.gene45990:CDS
CCAATATTCCAATCCAAGAT+TGG 0.459727 7.2:-44270798 MS.gene45990:CDS
CTACCTTCCATGGAGTTCCT+TGG 0.467829 7.2:+44271328 None:intergenic
TCTGTCACCATAATCGTTGT+TGG 0.469184 7.2:+44270366 None:intergenic
TCTGTATGCTGATGCAGAAA+AGG 0.472268 7.2:-44271533 MS.gene45990:CDS
CAAAGCGTGGAAGATCTTGA+TGG 0.480157 7.2:-44271394 MS.gene45990:CDS
TGTCCCAGTTCCTTTGACAA+TGG 0.481284 7.2:-44271169 MS.gene45990:CDS
ACACCATCAAACGATGTCAT+TGG 0.485386 7.2:+44270327 None:intergenic
TGAGTCCAGAGAGATGTTTA+CGG 0.491599 7.2:-44270557 MS.gene45990:CDS
AATTTCCTCAATGTCATTCA+GGG 0.500560 7.2:+44270278 None:intergenic
ATAGTTTGTAATACTATGGC+TGG 0.501997 7.2:-44271622 None:intergenic
ACTCCAATGACATCGTTTGA+TGG 0.503158 7.2:-44270330 MS.gene45990:CDS
CCTCCTACAACTACCTTCCA+TGG 0.511757 7.2:+44271318 None:intergenic
AAGCCCTCATCTGCATATGT+TGG 0.515996 7.2:+44270840 None:intergenic
TGGTTCCTTACTCCATATGT+AGG 0.516443 7.2:+44270492 None:intergenic
AGGAACCAGAAATGCCTTTG+TGG 0.516773 7.2:-44271217 MS.gene45990:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.2:-44270630 MS.gene45990:CDS
AGTACTTTATCTCTGAGGGC+TGG 0.520016 7.2:-44271264 MS.gene45990:CDS
TTTAACAAAGCCATTGTCAA+AGG 0.526591 7.2:+44271159 None:intergenic
ACTCCATGGAAGGTAGTTGT+AGG 0.528561 7.2:-44271321 MS.gene45990:CDS
GATTATGGTGACAGACGACT+TGG 0.531122 7.2:-44270358 MS.gene45990:CDS
ACTCACCTAAGTAGTGTTTG+AGG 0.535054 7.2:+44270095 None:intergenic
ATTGTCAAAGGAACTGGGAC+AGG 0.536280 7.2:+44271171 None:intergenic
TGTCGTTAATATTGGAGTGA+AGG 0.536937 7.2:-44270256 MS.gene45990:CDS
TGTGACCGTAAACATCTCTC+TGG 0.540356 7.2:+44270552 None:intergenic
AGTCTTGCAATAGTCCCTAA+AGG 0.541322 7.2:+44271475 None:intergenic
CGTTAATATTGGAGTGAAGG+AGG 0.542677 7.2:-44270253 MS.gene45990:intron
CAGAGGAGTCTTCGAGAGCA+AGG 0.548998 7.2:+44270887 None:intergenic
TCGACATCTGCTTTGACTAA+CGG 0.558603 7.2:-44270118 MS.gene45990:CDS
ATCCAAGATTGGTATTGGAA+AGG 0.566598 7.2:-44270787 MS.gene45990:CDS
AAAGCGTGGAAGATCTTGAT+GGG 0.579877 7.2:-44271393 MS.gene45990:CDS
TTCATATCTAGAAAGAATGA+AGG 0.581383 7.2:-44270304 MS.gene45990:CDS
TGGGAAATATCTATGGTCAC+AGG 0.588806 7.2:-44271374 MS.gene45990:CDS
ATTGGCTTACCCTCTTCAGA+TGG 0.594507 7.2:+44270816 None:intergenic
GTTTCTGGAGGATATGTCAC+AGG 0.594537 7.2:-44270390 MS.gene45990:CDS
GAAACCAACATATGCAGATG+AGG 0.595214 7.2:-44270844 MS.gene45990:CDS
TGAGGGCTTACCATCTGAAG+AGG 0.596168 7.2:-44270826 MS.gene45990:CDS
AACGGCCTCAAACACTACTT+AGG 0.596286 7.2:-44270100 MS.gene45990:intron
CCCAAATCCCCTGTTTCTGG+AGG 0.597019 7.2:-44270402 MS.gene45990:CDS
ATCTGCTTACCCTCTTCAGA+TGG 0.597746 7.2:+44270759 None:intergenic
CCATGGAAGGTAGTTGTAGG+AGG 0.601693 7.2:-44271318 MS.gene45990:CDS
TGACATATCCTCCAGAAACA+GGG 0.601751 7.2:+44270394 None:intergenic
TCAGAGATAAAGTACTGTAT+CGG 0.601793 7.2:+44271271 None:intergenic
ACTCAAGCCAAGGAACTCCA+TGG 0.606428 7.2:-44271335 MS.gene45990:CDS
ATACAGTACTTTATCTCTGA+GGG 0.610697 7.2:-44271268 MS.gene45990:CDS
AAGAAATGCTACTCAAGCCA+AGG 0.611550 7.2:-44271345 MS.gene45990:CDS
AAAGGGCTTACCATCTGAAG+AGG 0.612181 7.2:-44270769 MS.gene45990:CDS
CATTCTGTTTGGTATAGCAG+AGG 0.612193 7.2:-44270700 MS.gene45990:CDS
TAGCTCACTTTATCAAAGCG+TGG 0.619163 7.2:-44271407 MS.gene45990:CDS
AAGCCATTGTCAAAGGAACT+GGG 0.620227 7.2:+44271166 None:intergenic
AGGGACTATTGCAAGACTAG+TGG 0.623463 7.2:-44271470 MS.gene45990:CDS
AAACCAACATATGCAGATGA+GGG 0.635875 7.2:-44270843 MS.gene45990:CDS
GCTGTGCTTACTTCCAAAGA+CGG 0.639419 7.2:-44270450 MS.gene45990:CDS
AAGCCAAGGAACTCCATGGA+AGG 0.641089 7.2:-44271331 MS.gene45990:CDS
TACTTCCAAAGACGGTGGCG+AGG 0.644172 7.2:-44270442 MS.gene45990:CDS
TTGAAGATAAAGTCTGTCAG+AGG 0.653285 7.2:+44270870 None:intergenic
ATTTCCTCAATGTCATTCAG+GGG 0.654185 7.2:+44270279 None:intergenic
TTTCCTCAATGTCATTCAGG+GGG 0.662963 7.2:+44270280 None:intergenic
ATTTGCAACACTCCTCCTAG+TGG 0.665153 7.2:+44270639 None:intergenic
AAGGGCTTACCATCTGAAGA+GGG 0.666261 7.2:-44270768 MS.gene45990:CDS
GAGGGCTTACCATCTGAAGA+GGG 0.666261 7.2:-44270825 MS.gene45990:CDS
GACATATCCTCCAGAAACAG+GGG 0.675682 7.2:+44270395 None:intergenic
GTTAGTCAAAGCAGATGTCG+AGG 0.681782 7.2:+44270120 None:intergenic
GATACAGTACTTTATCTCTG+AGG 0.684381 7.2:-44271269 MS.gene45990:CDS
TGTTACAATACGTTCCACAA+AGG 0.700027 7.2:+44271203 None:intergenic
GTGCTTACTTCCAAAGACGG+TGG 0.717388 7.2:-44270447 MS.gene45990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCTTTAGATAATTAC+TGG - chr7.2:44271293-44271312 MS.gene45990:CDS 15.0%
!! TCAAATGTTATAAAACAAAA+TGG + chr7.2:44271505-44271524 None:intergenic 15.0%
!!! AATTTCTATATTTTTATCAC+TGG - chr7.2:44270307-44270326 MS.gene45990:CDS 15.0%
!! AAAAATTGGTAAAACCATTA+AGG - chr7.2:44271404-44271423 MS.gene45990:CDS 20.0%
!! ATATCTATGTTTATATGTGT+AGG - chr7.2:44270348-44270367 MS.gene45990:CDS 20.0%
! AATATCGAAGCAATGAAATT+TGG - chr7.2:44269843-44269862 MS.gene45990:intron 25.0%
! GGTAGTAAATTAGTGTATAA+TGG + chr7.2:44271374-44271393 None:intergenic 25.0%
! TACCATCTTCTCATAAAAAT+TGG - chr7.2:44271390-44271409 MS.gene45990:CDS 25.0%
! TGAAGTTACATTGAAAGTTA+TGG - chr7.2:44269701-44269720 MS.gene45990:intron 25.0%
! TTCATATCTAGAAAGAATGA+AGG - chr7.2:44270975-44270994 MS.gene45990:intron 25.0%
! TTGACATTTCTTATCCTTAA+TGG + chr7.2:44271421-44271440 None:intergenic 25.0%
!! ATAATTTGTATCTATGGTGA+TGG - chr7.2:44271103-44271122 MS.gene45990:intron 25.0%
!! ATTTTCATCTATGCAAATCT+TGG - chr7.2:44271444-44271463 MS.gene45990:CDS 25.0%
!! GATTGCATAATTTGTATCTA+TGG - chr7.2:44271097-44271116 MS.gene45990:intron 25.0%
!! TACCAATTTTTATGAGAAGA+TGG + chr7.2:44271395-44271414 None:intergenic 25.0%
!! TTTTCATCTATGCAAATCTT+GGG - chr7.2:44271445-44271464 MS.gene45990:CDS 25.0%
AACTCATTCAGTATTTCACA+TGG + chr7.2:44271340-44271359 None:intergenic 30.0%
AATGATCTGGTAAAAGGTTT+AGG - chr7.2:44270188-44270207 MS.gene45990:intron 30.0%
AATTTCCTCAATGTCATTCA+GGG + chr7.2:44271004-44271023 None:intergenic 30.0%
ACTCATTCAGTATTTCACAT+GGG + chr7.2:44271339-44271358 None:intergenic 30.0%
ATACAGTACTTTATCTCTGA+GGG - chr7.2:44270011-44270030 MS.gene45990:intron 30.0%
ATCTTGATGGGAAATATCTA+TGG - chr7.2:44269898-44269917 MS.gene45990:intron 30.0%
CCATATGTAGGAAAAATTTG+AGG + chr7.2:44270778-44270797 None:intergenic 30.0%
GAGGAAATTGTCGTTAATAT+TGG - chr7.2:44271015-44271034 MS.gene45990:intron 30.0%
TCAACTAGAAACATTCTGTT+TGG - chr7.2:44270568-44270587 MS.gene45990:CDS 30.0%
TTTAACAAAGCCATTGTCAA+AGG + chr7.2:44270123-44270142 None:intergenic 30.0%
! AAACCTTTTACCAGATCATT+AGG + chr7.2:44270188-44270207 None:intergenic 30.0%
! CCTCAAATTTTTCCTACATA+TGG - chr7.2:44270775-44270794 MS.gene45990:CDS 30.0%
! TGAAGTGTGTGAGTATTTTT+AGG - chr7.2:44270042-44270061 MS.gene45990:intron 30.0%
! TGTTATGTATGACGAGATTT+TGG + chr7.2:44271229-44271248 None:intergenic 30.0%
! TTTTTCCTACATATGGAGTA+AGG - chr7.2:44270782-44270801 MS.gene45990:CDS 30.0%
!! ATGACGAGATTTTGGTAATT+TGG + chr7.2:44271221-44271240 None:intergenic 30.0%
!! CAATGGCTTTGTTAAAGATA+TGG - chr7.2:44270127-44270146 MS.gene45990:CDS 30.0%
!! TCAGAGATAAAGTACTGTAT+CGG + chr7.2:44270011-44270030 None:intergenic 30.0%
!!! CTGTTTTGATTGGTAAAATC+TGG + chr7.2:44270810-44270829 None:intergenic 30.0%
AAACCAACATATGCAGATGA+GGG - chr7.2:44270436-44270455 MS.gene45990:CDS 35.0%
AACACTACTTATCAGCAAGA+AGG - chr7.2:44270259-44270278 MS.gene45990:CDS 35.0%
AGTTTCTTGACATTGCCTTT+AGG - chr7.2:44269789-44269808 MS.gene45990:intron 35.0%
ATGCCTAATGATCTGGTAAA+AGG - chr7.2:44270182-44270201 MS.gene45990:intron 35.0%
ATTTCCTCAATGTCATTCAG+GGG + chr7.2:44271003-44271022 None:intergenic 35.0%
CAATTTCCTCAATGTCATTC+AGG + chr7.2:44271005-44271024 None:intergenic 35.0%
CCAATATTCCAATCCAAGAT+TGG - chr7.2:44270481-44270500 MS.gene45990:CDS 35.0%
GATACAGTACTTTATCTCTG+AGG - chr7.2:44270010-44270029 MS.gene45990:intron 35.0%
GTTTCTTGACATTGCCTTTA+GGG - chr7.2:44269790-44269809 MS.gene45990:intron 35.0%
TGTCGTTAATATTGGAGTGA+AGG - chr7.2:44271023-44271042 MS.gene45990:intron 35.0%
TGTTACAATACGTTCCACAA+AGG + chr7.2:44270079-44270098 None:intergenic 35.0%
TTAGGTTTACTGCAGATGAA+CGG - chr7.2:44270206-44270225 MS.gene45990:intron 35.0%
TTCCAATACCAATCTTGGAT+TGG + chr7.2:44270492-44270511 None:intergenic 35.0%
TTCCAATCCAAGATTGGTAT+TGG - chr7.2:44270487-44270506 MS.gene45990:CDS 35.0%
TTCTGTAATGCCTAATGATC+TGG - chr7.2:44270175-44270194 MS.gene45990:intron 35.0%
TTGAAGATAAAGTCTGTCAG+AGG + chr7.2:44270412-44270431 None:intergenic 35.0%
! ATCCAAGATTGGTATTGGAA+AGG - chr7.2:44270492-44270511 MS.gene45990:CDS 35.0%
! CCAATCTTGGATTGGAATAT+TGG + chr7.2:44270484-44270503 None:intergenic 35.0%
! CTTTTTAACCATGAAGTGTG+TGG + chr7.2:44271473-44271492 None:intergenic 35.0%
! TATAGCAGAGGAAGATTTTG+CGG - chr7.2:44270591-44270610 MS.gene45990:CDS 35.0%
! TCCAAGATTGGTATTGGAAA+GGG - chr7.2:44270493-44270512 MS.gene45990:CDS 35.0%
!! AGTTTTCTCACTTTTCCACT+AGG - chr7.2:44270625-44270644 MS.gene45990:CDS 35.0%
AAAGCCATTGTCAAAGGAAC+TGG + chr7.2:44270117-44270136 None:intergenic 40.0%
AAAGCGTGGAAGATCTTGAT+GGG - chr7.2:44269886-44269905 MS.gene45990:intron 40.0%
AAGAAATGCTACTCAAGCCA+AGG - chr7.2:44269934-44269953 MS.gene45990:intron 40.0%
AAGCCATTGTCAAAGGAACT+GGG + chr7.2:44270116-44270135 None:intergenic 40.0%
ACACCATCAAACGATGTCAT+TGG + chr7.2:44270955-44270974 None:intergenic 40.0%
ACTACTTATCAGCAAGAAGG+AGG - chr7.2:44270262-44270281 MS.gene45990:CDS 40.0%
ACTCACCTAAGTAGTGTTTG+AGG + chr7.2:44271187-44271206 None:intergenic 40.0%
ACTCCAATGACATCGTTTGA+TGG - chr7.2:44270949-44270968 MS.gene45990:intron 40.0%
AGTCTTGCAATAGTCCCTAA+AGG + chr7.2:44269807-44269826 None:intergenic 40.0%
CATTCTGTTTGGTATAGCAG+AGG - chr7.2:44270579-44270598 MS.gene45990:CDS 40.0%
CGTTAATATTGGAGTGAAGG+AGG - chr7.2:44271026-44271045 MS.gene45990:intron 40.0%
GAAACCAACATATGCAGATG+AGG - chr7.2:44270435-44270454 MS.gene45990:CDS 40.0%
TAGCTCACTTTATCAAAGCG+TGG - chr7.2:44269872-44269891 MS.gene45990:intron 40.0%
TCGACATCTGCTTTGACTAA+CGG - chr7.2:44271161-44271180 MS.gene45990:CDS 40.0%
TCTGTATGCTGATGCAGAAA+AGG - chr7.2:44269746-44269765 MS.gene45990:intron 40.0%
TCTGTCACCATAATCGTTGT+TGG + chr7.2:44270916-44270935 None:intergenic 40.0%
TGACATATCCTCCAGAAACA+GGG + chr7.2:44270888-44270907 None:intergenic 40.0%
TGAGTCCAGAGAGATGTTTA+CGG - chr7.2:44270722-44270741 MS.gene45990:CDS 40.0%
TGGGAAATATCTATGGTCAC+AGG - chr7.2:44269905-44269924 MS.gene45990:intron 40.0%
TGGTTCCTTACTCCATATGT+AGG + chr7.2:44270790-44270809 None:intergenic 40.0%
TTTCCTCAATGTCATTCAGG+GGG + chr7.2:44271002-44271021 None:intergenic 40.0%
!! TTTCTCACTTTTCCACTAGG+AGG - chr7.2:44270628-44270647 MS.gene45990:CDS 40.0%
!!! GTAAGCACAGCTGTTTTGAT+TGG + chr7.2:44270820-44270839 None:intergenic 40.0%
AAAGGGCTTACCATCTGAAG+AGG - chr7.2:44270510-44270529 MS.gene45990:CDS 45.0%
AACGGCCTCAAACACTACTT+AGG - chr7.2:44271179-44271198 MS.gene45990:CDS 45.0%
AAGCCCTCATCTGCATATGT+TGG + chr7.2:44270442-44270461 None:intergenic 45.0%
AAGGGCTTACCATCTGAAGA+GGG - chr7.2:44270511-44270530 MS.gene45990:CDS 45.0%
ACTCCATGGAAGGTAGTTGT+AGG - chr7.2:44269958-44269977 MS.gene45990:intron 45.0%
AGGAACCAGAAATGCCTTTG+TGG - chr7.2:44270062-44270081 MS.gene45990:intron 45.0%
AGGGACTATTGCAAGACTAG+TGG - chr7.2:44269809-44269828 MS.gene45990:intron 45.0%
ATCTGCTTACCCTCTTCAGA+TGG + chr7.2:44270523-44270542 None:intergenic 45.0%
ATTGTCAAAGGAACTGGGAC+AGG + chr7.2:44270111-44270130 None:intergenic 45.0%
ATTTGCAACACTCCTCCTAG+TGG + chr7.2:44270643-44270662 None:intergenic 45.0%
CAAAGCGTGGAAGATCTTGA+TGG - chr7.2:44269885-44269904 MS.gene45990:intron 45.0%
CACAGGACCAACAACGATTA+TGG - chr7.2:44270906-44270925 MS.gene45990:CDS 45.0%
GACATATCCTCCAGAAACAG+GGG + chr7.2:44270887-44270906 None:intergenic 45.0%
GATTATGGTGACAGACGACT+TGG - chr7.2:44270921-44270940 MS.gene45990:intron 45.0%
GCCCTTTCCAATACCAATCT+TGG + chr7.2:44270497-44270516 None:intergenic 45.0%
GCTGTGCTTACTTCCAAAGA+CGG - chr7.2:44270829-44270848 MS.gene45990:CDS 45.0%
GTGACATATCCTCCAGAAAC+AGG + chr7.2:44270889-44270908 None:intergenic 45.0%
GTTAGTCAAAGCAGATGTCG+AGG + chr7.2:44271162-44271181 None:intergenic 45.0%
TGTCCCAGTTCCTTTGACAA+TGG - chr7.2:44270110-44270129 MS.gene45990:CDS 45.0%
TGTGACCGTAAACATCTCTC+TGG + chr7.2:44270730-44270749 None:intergenic 45.0%
! AGTACTTTATCTCTGAGGGC+TGG - chr7.2:44270015-44270034 MS.gene45990:intron 45.0%
! ATTGGCTTACCCTCTTCAGA+TGG + chr7.2:44270466-44270485 None:intergenic 45.0%
! GTTTCTGGAGGATATGTCAC+AGG - chr7.2:44270889-44270908 MS.gene45990:CDS 45.0%
!! ACGTTCCACAAAGGCATTTC+TGG + chr7.2:44270070-44270089 None:intergenic 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG - chr7.2:44270649-44270668 MS.gene45990:CDS 45.0%
!! GTATCTATGGTGATGGTGCA+GGG - chr7.2:44271110-44271129 MS.gene45990:CDS 45.0%
!! TGTATCTATGGTGATGGTGC+AGG - chr7.2:44271109-44271128 MS.gene45990:CDS 45.0%
AAGCCAAGGAACTCCATGGA+AGG - chr7.2:44269948-44269967 MS.gene45990:intron 50.0%
ACTCAAGCCAAGGAACTCCA+TGG - chr7.2:44269944-44269963 MS.gene45990:intron 50.0%
CCATGGAAGGTAGTTGTAGG+AGG - chr7.2:44269961-44269980 MS.gene45990:intron 50.0%
CCTCCAGAAACAGGGGATTT+GGG + chr7.2:44270880-44270899 None:intergenic 50.0%
CCTCCTACAACTACCTTCCA+TGG + chr7.2:44269964-44269983 None:intergenic 50.0%
CTACCTTCCATGGAGTTCCT+TGG + chr7.2:44269954-44269973 None:intergenic 50.0%
GAGGGCTTACCATCTGAAGA+GGG - chr7.2:44270454-44270473 MS.gene45990:CDS 50.0%
GATCCCAAATCCCCTGTTTC+TGG - chr7.2:44270874-44270893 MS.gene45990:CDS 50.0%
GTGCTTACTTCCAAAGACGG+TGG - chr7.2:44270832-44270851 MS.gene45990:CDS 50.0%
TCCTCCAGAAACAGGGGATT+TGG + chr7.2:44270881-44270900 None:intergenic 50.0%
TGAGGGCTTACCATCTGAAG+AGG - chr7.2:44270453-44270472 MS.gene45990:CDS 50.0%
! AGAAGGAGGCATGCTTTCTC+TGG - chr7.2:44270276-44270295 MS.gene45990:CDS 50.0%
CAGAGGAGTCTTCGAGAGCA+AGG + chr7.2:44270395-44270414 None:intergenic 55.0%
CTTGGGAGCCACACACTTCA+TGG - chr7.2:44271462-44271481 MS.gene45990:CDS 55.0%
GGTCCCCCTGAATGACATTG+AGG - chr7.2:44270996-44271015 MS.gene45990:intron 55.0%
TACTTCCAAAGACGGTGGCG+AGG - chr7.2:44270837-44270856 MS.gene45990:CDS 55.0%
!! CCCAAATCCCCTGTTTCTGG+AGG - chr7.2:44270877-44270896 MS.gene45990:CDS 55.0%
CAAGACCTCGCCACCGTCTT+TGG + chr7.2:44270845-44270864 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44269672 44271629 44269672 ID=MS.gene45990
chr7.2 mRNA 44269672 44271629 44269672 ID=MS.gene45990.t1;Parent=MS.gene45990
chr7.2 exon 44271105 44271629 44271105 ID=MS.gene45990.t1.exon1;Parent=MS.gene45990.t1
chr7.2 CDS 44271105 44271629 44271105 ID=cds.MS.gene45990.t1;Parent=MS.gene45990.t1
chr7.2 exon 44270254 44270931 44270254 ID=MS.gene45990.t1.exon2;Parent=MS.gene45990.t1
chr7.2 CDS 44270254 44270931 44270254 ID=cds.MS.gene45990.t1;Parent=MS.gene45990.t1
chr7.2 exon 44270101 44270170 44270101 ID=MS.gene45990.t1.exon3;Parent=MS.gene45990.t1
chr7.2 CDS 44270101 44270170 44270101 ID=cds.MS.gene45990.t1;Parent=MS.gene45990.t1
chr7.2 exon 44269672 44269676 44269672 ID=MS.gene45990.t1.exon4;Parent=MS.gene45990.t1
chr7.2 CDS 44269672 44269676 44269672 ID=cds.MS.gene45990.t1;Parent=MS.gene45990.t1
Gene Sequence

>MS.gene45990

ATGGCTGGCACTACAACTAAATCAGATGATGAAGTTACATTGAAAGTTATGGTCGACAGAGAAAGAAACAAAGTTCTGTATGCTGATGCAGAAAAGGATTTTGTTGACGTTCTTTTGAGTTTCTTGACATTGCCTTTAGGGACTATTGCAAGACTAGTGGCTGCAGAATCAAATATCGAAGCAATGAAATTTGGCAGCATTAGCTCACTTTATCAAAGCGTGGAAGATCTTGATGGGAAATATCTATGGTCACAGGAATGCAAAGAAATGCTACTCAAGCCAAGGAACTCCATGGAAGGTAGTTGTAGGAGGCTCAAACTGAACATCGATGACACACCGATACAGTACTTTATCTCTGAGGGCTGGATTTTGAAGTGTGTGAGTATTTTTAGGAACCAGAAATGCCTTTGTGGAACGTATTGTAACAGAGAAGTTACCTGTCCCAGTTCCTTTGACAATGGCTTTGTTAAAGATATGGCTAGTTTTATAATTCATGATGATCTTTCTGTAATGCCTAATGATCTGGTAAAAGGTTTAGGTTTACTGCAGATGAACGGAATCAATGACATTGCAGATATCGAGAGAAAAACACTACTTATCAGCAAGAAGGAGGCATGCTTTCTCTGGATTTTCTAAATTTCTATATTTTTATCACTGGTGTTGATTTTTTGAATGAATATCTATGTTTATATGTGTAGGTAGTCGATCTTCTCAAGTTGTCCTTGCTCTCGAAGACTCCTCTGACAGACTTTATCTTCAAGAAGAAACCAACATATGCAGATGAGGGCTTACCATCTGAAGAGGGTAAGCCAATATTCCAATCCAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGGTAAGCAGATACTGATAAAGCTACTTGTTAGAAAATCAACTAGAAACATTCTGTTTGGTATAGCAGAGGAAGATTTTGCGGACTTTCTTTTCAGTTTTCTCACTTTTCCACTAGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCTTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAGTCCAGAGAGATGTTTACGGTCACATGAACTTAAAAACAATCTAAGTAAGCCTCAAATTTTTCCTACATATGGAGTAAGGAACCAGATTTTACCAATCAAAACAGCTGTGCTTACTTCCAAAGACGGTGGCGAGGTCTTGAAATTTGTTGATCCCAAATCCCCTGTTTCTGGAGGATATGTCACAGGACCAACAACGATTATGGTGACAGACGACTTGGTTGTGACTCCAATGACATCGTTTGATGGTGTTTCATATCTAGAAAGAATGAAGGTCCCCCTGAATGACATTGAGGAAATTGTCGTTAATATTGGAGTGAAGGAGGTAAAGTGTCTGAGACAATATTTAGCACAATTTTTCATTAATATTTCTTGATTGCATAATTTGTATCTATGGTGATGGTGCAGGGTCTCAGCATACTAAAAGCTTCATTGACCTCGACATCTGCTTTGACTAACGGCCTCAAACACTACTTAGGTGAGTTCAATATTCAACCAAATTACCAAAATCTCGTCATACATAACAATTATAATAAAAACAATATCAAAGCTCATGCAGAATTTGTTTTAATTTATCTTTAGATAATTACTGGTTGTTCTTTTATTCAAAAGTCCCATGTGAAATACTGAATGAGTTAAGTATTATAACCATTATACACTAATTTACTACCATCTTCTCATAAAAATTGGTAAAACCATTAAGGATAAGAAATGTCAATTTATTTTCATCTATGCAAATCTTGGGAGCCACACACTTCATGGTTAAAAAGATTAGATTACCATTTTGTTTTATAACATTTGAGAGTAATTTAGTCTCTCATAATTTTGTTGATTTTTCTGTAAAATATTCTGAATTAGATCAATGATTTCTTTACTTTTCTAATCAATATTATTTCTTCTAGCATGA
Protein sequence

>MS.gene45990.t1

MAGTTTKSDDEVTLKVMVDRERNKVLYADAEKDFVDVLLSFLTLPLGTIARLVAAESNIEAMKFGSISSLYQSVEDLDGKYLWSQECKEMLLKPRNSMEGSCRRLKLNIDDTPIQYFISEGWILKCVSIFRNQKCLCGTYCNREVTCPSSFDNGFVKDMASFIIHDDLSVMPNDLVVDLLKLSLLSKTPLTDFIFKKKPTYADEGLPSEEGKPIFQSKIGIGKGLPSEEGKQILIKLLVRKSTRNILFGIAEEDFADFLFSFLTFPLGGVLQMLEGFSSLSCIDILYKSMTELSPERCLRSHELKNNLSKPQIFPTYGVRNQILPIKTAVLTSKDGGEVLKFVDPKSPVSGGYVTGPTTIMVTDDLVVTPMTSFDGVSYLERMKVPLNDIEEIVVNIGVKEGLSILKASLTSTSALTNGLKHYLA