AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89816

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89816.t1 MTR_7g062300 54.968 473 197 8 2 461 3 472 1.41e-171 491
MS.gene89816.t1 MTR_7g062280 53.144 493 201 9 3 468 2 491 6.02e-169 485
MS.gene89816.t1 MTR_7g063840 55.391 473 191 10 9 468 8 473 3.94e-164 473
MS.gene89816.t1 MTR_7g063900 54.268 492 194 8 3 468 2 488 1.47e-161 466
MS.gene89816.t1 MTR_7g063920 52.092 478 177 6 1 468 1 436 6.80e-156 450
MS.gene89816.t1 MTR_7g063880 54.733 486 184 13 1 468 1 468 7.56e-156 451
MS.gene89816.t1 MTR_7g063830 51.266 474 194 10 3 469 2 445 1.39e-152 442
MS.gene89816.t1 MTR_7g063890 54.786 491 190 11 4 468 20 504 1.34e-149 437
MS.gene89816.t1 MTR_7g063660 50.420 476 209 11 12 468 10 477 5.42e-147 429
MS.gene89816.t1 MTR_7g063660 28.936 235 136 8 8 228 247 464 3.15e-17 84.3
MS.gene89816.t1 MTR_7g063820 50.909 495 202 11 3 468 2 484 1.71e-141 415
MS.gene89816.t1 MTR_3g007740 51.483 472 179 10 7 462 5 442 5.45e-140 410
MS.gene89816.t1 MTR_7g063670 49.053 475 197 10 9 468 13 457 7.74e-133 392
MS.gene89816.t1 MTR_7g063720 78.455 246 44 4 234 478 1 238 4.57e-131 379
MS.gene89816.t1 MTR_7g063720 30.137 219 126 9 14 229 26 220 1.15e-15 77.0
MS.gene89816.t1 MTR_7g066570 42.324 482 231 13 12 462 15 480 2.47e-109 336
MS.gene89816.t1 MTR_3g065200 43.601 461 181 13 12 449 4 408 3.83e-102 313
MS.gene89816.t1 MTR_7g066260 40.890 472 251 6 3 462 7 462 1.61e-100 310
MS.gene89816.t1 MTR_7g058710 37.573 511 245 12 2 468 3 483 7.06e-94 293
MS.gene89816.t1 MTR_7g066480 39.525 463 204 9 12 459 17 418 1.61e-93 290
MS.gene89816.t1 MTR_7g066430 38.843 484 254 9 12 459 5 482 3.81e-92 289
MS.gene89816.t1 MTR_7g012680 38.925 465 236 8 12 462 15 445 1.58e-91 286
MS.gene89816.t1 MTR_7g066410 36.417 508 266 9 9 462 8 512 6.19e-90 284
MS.gene89816.t1 MTR_7g066410 30.738 244 135 8 5 229 278 506 1.30e-16 82.8
MS.gene89816.t1 MTR_7g066340 38.831 479 250 14 1 462 1 453 3.14e-88 278
MS.gene89816.t1 MTR_7g066400 37.815 476 230 11 10 465 11 440 5.07e-87 274
MS.gene89816.t1 MTR_7g066360 40.421 475 236 13 1 458 1 445 1.04e-86 275
MS.gene89816.t1 MTR_7g066350 37.214 481 237 11 12 465 10 452 4.30e-86 272
MS.gene89816.t1 MTR_7g066350 30.131 229 133 9 252 456 2 227 7.92e-15 77.0
MS.gene89816.t1 MTR_7g066290 39.224 464 223 11 12 462 16 433 2.02e-84 267
MS.gene89816.t1 MTR_7g066490 37.061 456 211 9 12 459 17 404 1.21e-83 265
MS.gene89816.t1 MTR_7g066490 26.606 218 126 6 256 456 16 216 8.50e-11 64.3
MS.gene89816.t1 MTR_7g066580 35.579 475 243 9 17 462 1 441 1.32e-82 263
MS.gene89816.t1 MTR_7g066580 29.614 233 138 9 14 230 218 440 9.59e-15 76.6
MS.gene89816.t1 MTR_1g041315 35.088 456 256 7 12 446 15 451 1.03e-80 259
MS.gene89816.t1 MTR_1g041315 25.210 238 145 8 249 456 9 243 2.94e-11 65.9
MS.gene89816.t1 MTR_4g019310 32.869 502 292 9 5 468 2 496 2.23e-70 232
MS.gene89816.t1 MTR_7g058700 34.188 468 215 10 23 468 531 927 3.04e-70 241
MS.gene89816.t1 MTR_4g017830 33.397 527 278 17 1 471 1 510 1.40e-69 231
MS.gene89816.t1 MTR_2g029400 34.279 458 215 10 12 451 15 404 2.20e-64 214
MS.gene89816.t1 MTR_2g029400 25.581 215 116 10 249 456 6 183 8.77e-12 67.4
MS.gene89816.t1 MTR_7g066310 33.040 454 223 13 12 462 8 383 2.20e-63 211
MS.gene89816.t1 MTR_7g063850 44.371 302 139 7 182 468 1 288 5.87e-63 207
MS.gene89816.t1 MTR_4g019340 33.054 478 266 13 12 450 39 501 2.72e-61 209
MS.gene89816.t1 MTR_4g019340 28.000 225 130 8 9 224 301 502 1.42e-13 73.2
MS.gene89816.t1 MTR_4g017440 30.938 501 279 14 14 462 17 502 7.38e-58 199
MS.gene89816.t1 MTR_4g017610 31.515 495 284 13 1 459 1 476 2.72e-57 197
MS.gene89816.t1 MTR_7g062270 55.319 188 80 4 1 187 1 185 2.05e-56 192
MS.gene89816.t1 MTR_7g100420 39.080 348 180 9 128 458 61 393 1.02e-54 188
MS.gene89816.t1 MTR_7g100420 64.000 50 18 0 5 54 33 82 1.24e-13 72.8
MS.gene89816.t1 MTR_4g017410 30.648 509 295 15 4 471 2 493 4.97e-54 189
MS.gene89816.t1 MTR_7g063690 43.728 279 87 7 9 283 10 222 8.73e-54 181
MS.gene89816.t1 MTR_4g017470 28.190 525 277 14 1 471 1 479 1.72e-51 182
MS.gene89816.t1 MTR_1g014060 44.118 204 107 4 20 220 9 208 1.98e-42 155
MS.gene89816.t1 MTR_1g014060 37.640 178 107 2 286 462 210 384 9.39e-29 117
MS.gene89816.t1 MTR_7g066680 36.545 301 134 8 212 458 37 334 3.12e-42 153
MS.gene89816.t1 MTR_7g066680 28.846 208 131 8 14 214 89 286 1.02e-15 79.0
MS.gene89816.t1 MTR_7g066280 29.604 429 207 13 90 462 1 390 5.98e-41 152
MS.gene89816.t1 MTR_8g023240 27.349 479 285 17 8 454 34 481 8.62e-38 145
MS.gene89816.t1 MTR_4g017550 28.903 474 256 18 41 458 21 469 1.62e-34 135
MS.gene89816.t1 MTR_4g017550 28.333 240 134 7 14 233 250 471 1.28e-12 70.1
MS.gene89816.t1 MTR_8g445860 35.772 246 133 8 1 235 7 238 3.15e-32 123
MS.gene89816.t1 MTR_1g115440 36.111 252 127 8 1 233 1 237 3.83e-32 123
MS.gene89816.t1 MTR_0150s0010 34.025 241 143 3 3 233 2 236 1.04e-27 111
MS.gene89816.t1 MTR_7g063870 65.789 76 26 0 144 219 82 157 1.09e-23 100
MS.gene89816.t1 MTR_7g063870 75.000 56 14 0 5 60 25 80 4.19e-18 84.3
MS.gene89816.t1 MTR_7g063870 28.509 228 96 10 259 457 34 223 8.54e-11 62.8
MS.gene89816.t1 MTR_1g115455 33.054 239 142 9 4 233 2 231 3.40e-23 98.6
MS.gene89816.t1 MTR_2g067310 34.737 190 75 7 12 195 44 190 1.63e-17 82.4
MS.gene89816.t1 MTR_7g063760 48.611 72 36 1 398 468 2 73 6.18e-16 72.8
MS.gene89816.t1 MTR_7g066390 32.934 167 66 2 297 462 1 122 1.16e-14 72.0
MS.gene89816.t1 MTR_4g019240 40.909 110 55 3 12 113 14 121 2.07e-14 72.0
MS.gene89816.t1 MTR_1g115450 41.053 95 47 2 1 95 1 86 5.30e-14 69.7
MS.gene89816.t1 MTR_8g445920 41.758 91 48 1 3 93 2 87 5.12e-13 65.9
MS.gene89816.t1 MTR_8g044890 41.758 91 48 1 3 93 2 87 5.12e-13 65.9
MS.gene89816.t1 MTR_1g115470 41.489 94 48 2 14 105 9 97 2.28e-12 69.3
MS.gene89816.t1 MTR_0150s0030 41.053 95 47 3 1 94 1 87 3.86e-12 65.9
MS.gene89816.t1 MTR_8g445910 42.105 95 46 3 1 94 1 87 2.30e-11 64.7
MS.gene89816.t1 MTR_8g044880 42.105 95 46 3 1 94 1 87 2.44e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89816.t1 AT3G09140 31.151 504 291 12 3 462 2 493 2.62e-60 206
MS.gene89816.t1 AT5G01130 31.789 475 288 13 4 468 2 450 5.55e-58 198
MS.gene89816.t1 AT5G01120 31.818 484 285 12 12 458 10 485 1.99e-57 198
MS.gene89816.t1 AT5G01150 31.548 504 286 13 4 468 2 485 9.15e-56 194
MS.gene89816.t1 AT3G09140 29.511 532 291 13 3 462 2 521 4.57e-55 192
MS.gene89816.t1 AT5G43240 31.670 521 292 16 4 478 2 504 4.82e-54 189
MS.gene89816.t1 AT5G43240 31.670 521 292 16 4 478 2 504 4.82e-54 189
MS.gene89816.t1 AT5G43240 31.670 521 292 16 4 478 2 504 4.82e-54 189
MS.gene89816.t1 AT3G09110 36.991 319 182 5 14 321 12 322 3.03e-53 183
MS.gene89816.t1 AT5G01140 28.425 489 305 12 1 472 1 461 4.98e-51 180
MS.gene89816.t1 AT3G09120 37.097 310 181 7 12 310 7 313 7.39e-48 167
MS.gene89816.t1 AT5G37320 26.749 486 307 11 16 467 14 484 1.36e-35 138
MS.gene89816.t1 AT5G43240 28.857 350 202 11 162 478 25 360 1.83e-21 96.3

Find 78 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCAACAATTCTATTCT+TGG 0.237094 7.3:-41530412 None:intergenic
CATTCAAAGGAGTTTGAAAA+TGG 0.274574 7.3:-41530686 None:intergenic
GTTTGAAGGAAACTGTTCTT+TGG 0.289961 7.3:+41530320 MS.gene89816:CDS
ATAAAACATTGTTGCTCTCT+TGG 0.301043 7.3:-41529378 None:intergenic
GCACCATAGCATACTTGATT+TGG 0.311535 7.3:+41530359 MS.gene89816:CDS
CTTGTAATATCCATTGAGTT+TGG 0.311703 7.3:-41529856 None:intergenic
TTTGGTATGCTCCAGAGTTT+TGG 0.326522 7.3:+41529880 MS.gene89816:CDS
TGGAATAAAGCACACTAGTT+TGG 0.327661 7.3:+41529900 MS.gene89816:CDS
CCTGATGATGATTGTTGGTT+TGG 0.329531 7.3:+41529739 MS.gene89816:CDS
AACTCCTTTGAATGACTTGA+AGG 0.334806 7.3:+41530695 MS.gene89816:CDS
TCAATGGATATTACAAGCTT+TGG 0.378411 7.3:+41529862 MS.gene89816:CDS
ATTAAATGTAAAACTGAAGT+TGG 0.382735 7.3:-41530660 None:intergenic
CCTCATTTATCCCCACAGTT+TGG 0.398100 7.3:+41530432 MS.gene89816:CDS
AGCTTCTTAACATTACCATT+TGG 0.402316 7.3:+41529439 MS.gene89816:CDS
TTTGAAGGAAACTGTTCTTT+GGG 0.409224 7.3:+41530321 MS.gene89816:CDS
TTTGAATGACTTGAAGGAAA+AGG 0.415391 7.3:+41530701 MS.gene89816:CDS
AATACACTTGTAATACTTTG+TGG 0.418975 7.3:-41529662 None:intergenic
GGATCTTCTGAAGTGCTCAT+TGG 0.422757 7.3:+41530071 MS.gene89816:CDS
GCAACCACATAACTCCTTTG+AGG 0.422934 7.3:+41529597 MS.gene89816:CDS
ATACACTTGTAATACTTTGT+GGG 0.426799 7.3:-41529661 None:intergenic
TGGTTCACCACAAGTTTCAA+TGG 0.432835 7.3:-41529358 None:intergenic
TACAAATGGTCTTGGACACT+TGG 0.433960 7.3:+41530899 MS.gene89816:CDS
CAACCATTGGATTGTCATCA+AGG 0.434484 7.3:+41530136 MS.gene89816:CDS
TGCAATGGATTTGTTAAAGA+TGG 0.450449 7.3:+41529796 MS.gene89816:CDS
CTATGTTGTCACAGATGACT+TGG 0.452913 7.3:+41530620 MS.gene89816:CDS
GAAAATATTGTATGCTCAAG+GGG 0.458367 7.3:+41530233 MS.gene89816:CDS
CGTCAATGTCACAAAGGAAA+AGG 0.462700 7.3:+41529936 MS.gene89816:CDS
CCAAACCAACAATCATCATC+AGG 0.464161 7.3:-41529739 None:intergenic
GGTTTCTAAGTCAACTTTGA+CGG 0.468220 7.3:+41530092 MS.gene89816:CDS
ACAATGGGATCTGTTACAAT+TGG 0.470466 7.3:+41529493 MS.gene89816:CDS
CCCTTCACATAACCATCAAC+AGG 0.474193 7.3:-41530588 None:intergenic
CTTGATGACAATCCAATGGT+TGG 0.475321 7.3:-41530135 None:intergenic
CATTCAATTCACAATTAAGC+TGG 0.492693 7.3:+41530191 MS.gene89816:CDS
AATGTCCTGATGATGATTGT+TGG 0.495820 7.3:+41529734 MS.gene89816:CDS
AAGAGTCATGCCAAACTCAA+TGG 0.497378 7.3:+41529846 MS.gene89816:CDS
GCAGCTCTTACAAATGGTCT+TGG 0.502895 7.3:+41530891 MS.gene89816:CDS
AAGGAAAAGGTTATCAACAT+TGG 0.509621 7.3:+41530714 MS.gene89816:CDS
TGTGCTTTATTCCAAAACTC+TGG 0.510085 7.3:-41529891 None:intergenic
GCAGTGCCTAAGCATATTGA+AGG 0.515824 7.3:+41530851 MS.gene89816:intron
GGGAAAATATTGTATGCTCA+AGG 0.519918 7.3:+41530231 MS.gene89816:CDS
TATCAACATTGGTCTTAATG+AGG 0.522803 7.3:+41530725 MS.gene89816:CDS
TGTCAAGATCTGCCACACTT+TGG 0.525138 7.3:-41529534 None:intergenic
CATCCAAATCAAGTATGCTA+TGG 0.525951 7.3:-41530362 None:intergenic
AAAGCACACTAGTTTGGTAA+AGG 0.525988 7.3:+41529906 MS.gene89816:CDS
TTAAGAATGAAACCAACCAT+TGG 0.528522 7.3:+41530123 MS.gene89816:CDS
TCAACAGCAGCTCTTACAAA+TGG 0.533519 7.3:+41530885 MS.gene89816:CDS
TGTTCTTTGGGAAGTATCGA+TGG 0.542058 7.3:+41530333 MS.gene89816:CDS
GGTGTTGTGCGTATGTTTGA+AGG 0.544358 7.3:+41530306 MS.gene89816:CDS
TTTATTTGCTGAAGCAGGAA+AGG 0.548519 7.3:+41529396 MS.gene89816:CDS
ATACGCACAACACCTCCTAA+AGG 0.555347 7.3:-41530297 None:intergenic
CTGGTTATTAGAAAATCAGA+TGG 0.557095 7.3:+41530210 MS.gene89816:CDS
GGAAAATATTGTATGCTCAA+GGG 0.563569 7.3:+41530232 MS.gene89816:CDS
ATTTGTAAGAGCTGCTGTTG+AGG 0.575365 7.3:-41530883 None:intergenic
CAAGTCATCTGTGACAACAT+AGG 0.575372 7.3:-41530619 None:intergenic
AGTCGTGTGATGGTTCCAAA+TGG 0.578063 7.3:-41529454 None:intergenic
GAATTGCGTCTGCAAACTCA+TGG 0.578728 7.3:-41530257 None:intergenic
GATTCTTCAGACCAAACTGT+GGG 0.578821 7.3:-41530443 None:intergenic
GGTGATTGAAGAACAAGAGG+AGG 0.590930 7.3:+41530920 MS.gene89816:CDS
GATTGTATGAAAGAAGAGAA+AGG 0.592818 7.3:+41529559 MS.gene89816:CDS
CTTGGTGATTGAAGAACAAG+AGG 0.594154 7.3:+41530917 MS.gene89816:CDS
TAATCCTCAAAGGAGTTATG+TGG 0.599519 7.3:-41529601 None:intergenic
AGAGCTGCAATAATCCTCAA+AGG 0.612957 7.3:-41529611 None:intergenic
CCTGTTGATGGTTATGTGAA+GGG 0.618307 7.3:+41530588 MS.gene89816:CDS
AATCCTTGATGACAATCCAA+TGG 0.620913 7.3:-41530139 None:intergenic
CCAAACTGTGGGGATAAATG+AGG 0.623529 7.3:-41530432 None:intergenic
TTCTAGTTCTACTCAATCAG+AGG 0.624316 7.3:+41529327 MS.gene89816:CDS
AAGATGCCTTCAATATGCTT+AGG 0.630281 7.3:-41530857 None:intergenic
GTGATTGAAGAACAAGAGGA+GGG 0.641908 7.3:+41530921 MS.gene89816:CDS
TGATTCTTCAGACCAAACTG+TGG 0.648098 7.3:-41530444 None:intergenic
ACCTGTTGATGGTTATGTGA+AGG 0.654826 7.3:+41530587 MS.gene89816:CDS
TAACAATCTCTACCAAAGTG+TGG 0.667124 7.3:+41529522 MS.gene89816:CDS
TCACATAACCATCAACAGGT+AGG 0.667372 7.3:-41530584 None:intergenic
TGGTTATTAGAAAATCAGAT+GGG 0.669816 7.3:+41530211 MS.gene89816:CDS
AATGATCGTCAATGTCACAA+AGG 0.671247 7.3:+41529930 MS.gene89816:CDS
GTATGTGCCATTGAAACTTG+TGG 0.696200 7.3:+41529351 MS.gene89816:CDS
ATTCTTCAGACCAAACTGTG+GGG 0.725443 7.3:-41530442 None:intergenic
AAAATATTGTATGCTCAAGG+GGG 0.738285 7.3:+41530234 MS.gene89816:CDS
TTGTGATGTTGAAAACGCTG+AGG 0.770040 7.3:+41530167 MS.gene89816:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAACAAGTTAAT+AGG - chr7.3:41530829-41530848 None:intergenic 10.0%
!! ATTTGTTTAATATTCTATAT+AGG + chr7.3:41530044-41530063 MS.gene89816:intron 10.0%
!! ATTAAACAAATCAATCAAAA+AGG - chr7.3:41530035-41530054 None:intergenic 15.0%
!!! AAAAGATAGATTATTTTGAT+TGG + chr7.3:41530529-41530548 MS.gene89816:CDS 15.0%
!! ATTAAATGTAAAACTGAAGT+TGG - chr7.3:41530663-41530682 None:intergenic 20.0%
!! TTAATATTCTATATAGGTAC+TGG + chr7.3:41530050-41530069 MS.gene89816:intron 20.0%
!!! TTTGAAATTGGAATCTATAT+AGG - chr7.3:41530766-41530785 None:intergenic 20.0%
! AATACACTTGTAATACTTTG+TGG - chr7.3:41529665-41529684 None:intergenic 25.0%
! ATACACTTGTAATACTTTGT+GGG - chr7.3:41529664-41529683 None:intergenic 25.0%
! TGGTTATTAGAAAATCAGAT+GGG + chr7.3:41530211-41530230 MS.gene89816:CDS 25.0%
!! ATCTATCTTTTCACAAGTTA+TGG - chr7.3:41530520-41530539 None:intergenic 25.0%
!! GAAGCACAAAAATTTGAAAT+TGG - chr7.3:41530778-41530797 None:intergenic 25.0%
AAAATATTGTATGCTCAAGG+GGG + chr7.3:41530234-41530253 MS.gene89816:CDS 30.0%
AAGGAAAAGGTTATCAACAT+TGG + chr7.3:41530714-41530733 MS.gene89816:CDS 30.0%
AGCTTCTTAACATTACCATT+TGG + chr7.3:41529439-41529458 MS.gene89816:CDS 30.0%
AGGATCAACAATTCTATTCT+TGG - chr7.3:41530415-41530434 None:intergenic 30.0%
ATAAAACATTGTTGCTCTCT+TGG - chr7.3:41529381-41529400 None:intergenic 30.0%
CATTCAAAGGAGTTTGAAAA+TGG - chr7.3:41530689-41530708 None:intergenic 30.0%
CATTCAATTCACAATTAAGC+TGG + chr7.3:41530191-41530210 MS.gene89816:CDS 30.0%
CTGGTTATTAGAAAATCAGA+TGG + chr7.3:41530210-41530229 MS.gene89816:CDS 30.0%
CTTCAAAAAGAGTCAACAAT+GGG + chr7.3:41529478-41529497 MS.gene89816:CDS 30.0%
CTTGTAATATCCATTGAGTT+TGG - chr7.3:41529859-41529878 None:intergenic 30.0%
GAAAATATTGTATGCTCAAG+GGG + chr7.3:41530233-41530252 MS.gene89816:CDS 30.0%
GATTGTATGAAAGAAGAGAA+AGG + chr7.3:41529559-41529578 MS.gene89816:CDS 30.0%
GGAAAATATTGTATGCTCAA+GGG + chr7.3:41530232-41530251 MS.gene89816:CDS 30.0%
TAGGAGCAATAGTTTACAAT+AGG - chr7.3:41530810-41530829 None:intergenic 30.0%
TCAATGGATATTACAAGCTT+TGG + chr7.3:41529862-41529881 MS.gene89816:CDS 30.0%
TCTTCAAAAAGAGTCAACAA+TGG + chr7.3:41529477-41529496 MS.gene89816:CDS 30.0%
TTAAGAATGAAACCAACCAT+TGG + chr7.3:41530123-41530142 MS.gene89816:CDS 30.0%
TTTGAAGGAAACTGTTCTTT+GGG + chr7.3:41530321-41530340 MS.gene89816:CDS 30.0%
TTTGAATGACTTGAAGGAAA+AGG + chr7.3:41530701-41530720 MS.gene89816:CDS 30.0%
! AGTTTTCTGACTTTTCCTTT+AGG + chr7.3:41530282-41530301 MS.gene89816:CDS 30.0%
! ATCAGATTTTTCCAATTCGT+CGG + chr7.3:41530463-41530482 MS.gene89816:CDS 30.0%
! TGACAATAAAACTTTTCACG+TGG - chr7.3:41530489-41530508 None:intergenic 30.0%
! TTTTCCTTCAAGTCATTCAA+AGG - chr7.3:41530702-41530721 None:intergenic 30.0%
!! TATCAACATTGGTCTTAATG+AGG + chr7.3:41530725-41530744 MS.gene89816:CDS 30.0%
!! TGCAATGGATTTGTTAAAGA+TGG + chr7.3:41529796-41529815 MS.gene89816:CDS 30.0%
!!! AATGTTTTATTTGCTGAAGC+AGG + chr7.3:41529391-41529410 MS.gene89816:CDS 30.0%
!!! CGTGAAAAGTTTTATTGTCA+TGG + chr7.3:41530489-41530508 MS.gene89816:CDS 30.0%
AACTCCTTTGAATGACTTGA+AGG + chr7.3:41530695-41530714 MS.gene89816:CDS 35.0%
AAGATGCCTTCAATATGCTT+AGG - chr7.3:41530860-41530879 None:intergenic 35.0%
AATGATCGTCAATGTCACAA+AGG + chr7.3:41529930-41529949 MS.gene89816:CDS 35.0%
ACAATGGGATCTGTTACAAT+TGG + chr7.3:41529493-41529512 MS.gene89816:CDS 35.0%
CATCCAAATCAAGTATGCTA+TGG - chr7.3:41530365-41530384 None:intergenic 35.0%
CTGGAAAAACAATTCTGCAA+TGG + chr7.3:41529781-41529800 MS.gene89816:CDS 35.0%
GGGAAAATATTGTATGCTCA+AGG + chr7.3:41530231-41530250 MS.gene89816:CDS 35.0%
GGTTTCTAAGTCAACTTTGA+CGG + chr7.3:41530092-41530111 MS.gene89816:CDS 35.0%
GTTTGAAGGAAACTGTTCTT+TGG + chr7.3:41530320-41530339 MS.gene89816:CDS 35.0%
TAACAATCTCTACCAAAGTG+TGG + chr7.3:41529522-41529541 MS.gene89816:CDS 35.0%
TAATCCTCAAAGGAGTTATG+TGG - chr7.3:41529604-41529623 None:intergenic 35.0%
TGGAATAAAGCACACTAGTT+TGG + chr7.3:41529900-41529919 MS.gene89816:CDS 35.0%
TTTGGAAAAACCCATGTAGT+TGG + chr7.3:41529757-41529776 MS.gene89816:CDS 35.0%
! AAAGCACACTAGTTTGGTAA+AGG + chr7.3:41529906-41529925 MS.gene89816:CDS 35.0%
! AATCCTTGATGACAATCCAA+TGG - chr7.3:41530142-41530161 None:intergenic 35.0%
! AATGTCCTGATGATGATTGT+TGG + chr7.3:41529734-41529753 MS.gene89816:CDS 35.0%
! ATCATCATCAGGACATTTTG+TGG - chr7.3:41529731-41529750 None:intergenic 35.0%
! TCTGTGACAACATAGGTTTT+TGG - chr7.3:41530615-41530634 None:intergenic 35.0%
! TGTGCTTTATTCCAAAACTC+TGG - chr7.3:41529894-41529913 None:intergenic 35.0%
! TTTATTTGCTGAAGCAGGAA+AGG + chr7.3:41529396-41529415 MS.gene89816:CDS 35.0%
! TTTCTGACTTTTCCTTTAGG+AGG + chr7.3:41530285-41530304 MS.gene89816:CDS 35.0%
! TTTTTCCAGACCAACTACAT+GGG - chr7.3:41529770-41529789 None:intergenic 35.0%
!! TTCTAGTTCTACTCAATCAG+AGG + chr7.3:41529327-41529346 MS.gene89816:CDS 35.0%
!! TTTTTGAAGAAGTCGTGTGA+TGG - chr7.3:41529467-41529486 None:intergenic 35.0%
!!! GTTTTTTACCTACCTGTTGA+TGG + chr7.3:41530576-41530595 MS.gene89816:CDS 35.0%
AAAAACCCATGTAGTTGGTC+TGG + chr7.3:41529762-41529781 MS.gene89816:CDS 40.0%
AAGAGTCATGCCAAACTCAA+TGG + chr7.3:41529846-41529865 MS.gene89816:CDS 40.0%
AGAGCTGCAATAATCCTCAA+AGG - chr7.3:41529614-41529633 None:intergenic 40.0%
ATTCTTCAGACCAAACTGTG+GGG - chr7.3:41530445-41530464 None:intergenic 40.0%
ATTTGTAAGAGCTGCTGTTG+AGG - chr7.3:41530886-41530905 None:intergenic 40.0%
CAACCATTGGATTGTCATCA+AGG + chr7.3:41530136-41530155 MS.gene89816:CDS 40.0%
CAAGTCATCTGTGACAACAT+AGG - chr7.3:41530622-41530641 None:intergenic 40.0%
CCAAACCAACAATCATCATC+AGG - chr7.3:41529742-41529761 None:intergenic 40.0%
CGTCAATGTCACAAAGGAAA+AGG + chr7.3:41529936-41529955 MS.gene89816:CDS 40.0%
CTATGTTGTCACAGATGACT+TGG + chr7.3:41530620-41530639 MS.gene89816:CDS 40.0%
GATTCTTCAGACCAAACTGT+GGG - chr7.3:41530446-41530465 None:intergenic 40.0%
GCACCATAGCATACTTGATT+TGG + chr7.3:41530359-41530378 MS.gene89816:CDS 40.0%
GGTCTTAATGAGGTATGTGA+TGG + chr7.3:41530735-41530754 MS.gene89816:intron 40.0%
GTGATTGAAGAACAAGAGGA+GGG + chr7.3:41530921-41530940 MS.gene89816:CDS 40.0%
TCAACAGCAGCTCTTACAAA+TGG + chr7.3:41530885-41530904 MS.gene89816:CDS 40.0%
TCACATAACCATCAACAGGT+AGG - chr7.3:41530587-41530606 None:intergenic 40.0%
TGATTCTTCAGACCAAACTG+TGG - chr7.3:41530447-41530466 None:intergenic 40.0%
TGGTTCACCACAAGTTTCAA+TGG - chr7.3:41529361-41529380 None:intergenic 40.0%
TTGTGATGTTGAAAACGCTG+AGG + chr7.3:41530167-41530186 MS.gene89816:CDS 40.0%
! CCTGATGATGATTGTTGGTT+TGG + chr7.3:41529739-41529758 MS.gene89816:CDS 40.0%
! CTTGATGACAATCCAATGGT+TGG - chr7.3:41530138-41530157 None:intergenic 40.0%
! CTTGGTGATTGAAGAACAAG+AGG + chr7.3:41530917-41530936 MS.gene89816:CDS 40.0%
! GTATGTGCCATTGAAACTTG+TGG + chr7.3:41529351-41529370 MS.gene89816:CDS 40.0%
! GTTTTTCCAGACCAACTACA+TGG - chr7.3:41529771-41529790 None:intergenic 40.0%
! TACAAATGGTCTTGGACACT+TGG + chr7.3:41530899-41530918 MS.gene89816:CDS 40.0%
! TTTGGTATGCTCCAGAGTTT+TGG + chr7.3:41529880-41529899 MS.gene89816:CDS 40.0%
!! ACCTGTTGATGGTTATGTGA+AGG + chr7.3:41530587-41530606 MS.gene89816:CDS 40.0%
!! CCTGTTGATGGTTATGTGAA+GGG + chr7.3:41530588-41530607 MS.gene89816:CDS 40.0%
!! TGTTCTTTGGGAAGTATCGA+TGG + chr7.3:41530333-41530352 MS.gene89816:CDS 40.0%
AGTCGTGTGATGGTTCCAAA+TGG - chr7.3:41529457-41529476 None:intergenic 45.0%
ATACGCACAACACCTCCTAA+AGG - chr7.3:41530300-41530319 None:intergenic 45.0%
CCAAACTGTGGGGATAAATG+AGG - chr7.3:41530435-41530454 None:intergenic 45.0%
CCCTTCACATAACCATCAAC+AGG - chr7.3:41530591-41530610 None:intergenic 45.0%
CCTCATTTATCCCCACAGTT+TGG + chr7.3:41530432-41530451 MS.gene89816:CDS 45.0%
GAATTGCGTCTGCAAACTCA+TGG - chr7.3:41530260-41530279 None:intergenic 45.0%
GCAACCACATAACTCCTTTG+AGG + chr7.3:41529597-41529616 MS.gene89816:CDS 45.0%
GCAGCTCTTACAAATGGTCT+TGG + chr7.3:41530891-41530910 MS.gene89816:CDS 45.0%
GCAGTGCCTAAGCATATTGA+AGG + chr7.3:41530851-41530870 MS.gene89816:intron 45.0%
GGTGATTGAAGAACAAGAGG+AGG + chr7.3:41530920-41530939 MS.gene89816:CDS 45.0%
TGTCAAGATCTGCCACACTT+TGG - chr7.3:41529537-41529556 None:intergenic 45.0%
! GGTGTTGTGCGTATGTTTGA+AGG + chr7.3:41530306-41530325 MS.gene89816:CDS 45.0%
!! GGATCTTCTGAAGTGCTCAT+TGG + chr7.3:41530071-41530090 MS.gene89816:CDS 45.0%
! TTTTCACGTGGCCGACGAAT+TGG - chr7.3:41530477-41530496 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 41529322 41530995 41529322 ID=MS.gene89816
chr7.3 mRNA 41529322 41530995 41529322 ID=MS.gene89816.t1;Parent=MS.gene89816
chr7.3 exon 41529322 41529957 41529322 ID=MS.gene89816.t1.exon1;Parent=MS.gene89816.t1
chr7.3 CDS 41529322 41529957 41529322 ID=cds.MS.gene89816.t1;Parent=MS.gene89816.t1
chr7.3 exon 41530066 41530746 41530066 ID=MS.gene89816.t1.exon2;Parent=MS.gene89816.t1
chr7.3 CDS 41530066 41530746 41530066 ID=cds.MS.gene89816.t1;Parent=MS.gene89816.t1
chr7.3 exon 41530855 41530995 41530855 ID=MS.gene89816.t1.exon3;Parent=MS.gene89816.t1
chr7.3 CDS 41530855 41530995 41530855 ID=cds.MS.gene89816.t1;Parent=MS.gene89816.t1
Gene Sequence

>MS.gene89816

ATGACTTCTAGTTCTACTCAATCAGAGGTGTATGTGCCATTGAAACTTGTGGTGAACCAAGAGAGCAACAATGTTTTATTTGCTGAAGCAGGAAAGGACTTTGTTGATGTTCTATTTAGCTTCTTAACATTACCATTTGGAACCATCACACGACTTCTTCAAAAAGAGTCAACAATGGGATCTGTTACAATTGGTTGTATTAACAATCTCTACCAAAGTGTGGCAGATCTTGACAAAGATTGTATGAAAGAAGAGAAAGGCAAAGAAATGTTATTGCAACCACATAACTCCTTTGAGGATTATTGCAGCTCTCTTAAACTAAACATTGATGACACAGAGCCCACAAAGTATTACAAGTGTATTGAGAGATTTCATCAATGCGATTTCGTTGATGTTTTGAGCACTTCCACAAAATGTCCTGATGATGATTGTTGGTTTGGAAAAACCCATGTAGTTGGTCTGGAAAAACAATTCTGCAATGGATTTGTTAAAGATGGTGCAACTTTTGTTATTACTGATGATCTAAGAGTCATGCCAAACTCAATGGATATTACAAGCTTTGGTATGCTCCAGAGTTTTGGAATAAAGCACACTAGTTTGGTAAAGGAAATGATCGTCAATGTCACAAAGGAAAAGGTTTTCTATTTACTATTTCGTGCGCTTTATTTCTAAATGCAGCACTTTTTTTTTTTTTTATTTCTTTAATATTTCCTTTTTGATTGATTTGTTTAATATTCTATATAGGTACTGGATCTTCTGAAGTGCTCATTGGTTTCTAAGTCAACTTTGACGGATTTGTTTTTAAGAATGAAACCAACCATTGGATTGTCATCAAGGATTTTCTGTTGTGATGTTGAAAACGCTGAGGACATTCAATTCACAATTAAGCTGGTTATTAGAAAATCAGATGGGAAAATATTGTATGCTCAAGGGGGCCATGAGTTTGCAGACGCAATTCTAAGTTTTCTGACTTTTCCTTTAGGAGGTGTTGTGCGTATGTTTGAAGGAAACTGTTCTTTGGGAAGTATCGATGGTTTGCACCATAGCATACTTGATTTGGATGAAAACAAATATTTTGTGACAAAAGAAGCCAAGAATAGAATTGTTGATCCTCATTTATCCCCACAGTTTGGTCTGAAGAATCAGATTTTTCCAATTCGTCGGCCACGTGAAAAGTTTTATTGTCATGGCAATTCCATAACTTGTGAAAAGATAGATTATTTTGATTGGACTGATGATACAGATTATAATCTCGTTTTTTACCTACCTGTTGATGGTTATGTGAAGGGACCAAAAACCTATGTTGTCACAGATGACTTGGTTTTAAAAGAGTCGTCTCCAACTTCAGTTTTACATTTAATCAACCATTTTCAAACTCCTTTGAATGACTTGAAGGAAAAGGTTATCAACATTGGTCTTAATGAGGTATGTGATGGTAATGCCTATATAGATTCCAATTTCAAATTTTTGTGCTTCTGTGTAATGCCTATTGTAAACTATTGCTCCTATTAACTTGTTATTTTTTTTGTGCAGTGCCTAAGCATATTGAAGGCATCTTTGACCTCAACAGCAGCTCTTACAAATGGTCTTGGACACTTGGTGATTGAAGAACAAGAGGAGGGATCTGTCAACTTACAAAGATCTGTTAATAAAGATCTGTTTCATTTAATTTAA
Protein sequence

>MS.gene89816.t1

MTSSSTQSEVYVPLKLVVNQESNNVLFAEAGKDFVDVLFSFLTLPFGTITRLLQKESTMGSVTIGCINNLYQSVADLDKDCMKEEKGKEMLLQPHNSFEDYCSSLKLNIDDTEPTKYYKCIERFHQCDFVDVLSTSTKCPDDDCWFGKTHVVGLEKQFCNGFVKDGATFVITDDLRVMPNSMDITSFGMLQSFGIKHTSLVKEMIVNVTKEKVLDLLKCSLVSKSTLTDLFLRMKPTIGLSSRIFCCDVENAEDIQFTIKLVIRKSDGKILYAQGGHEFADAILSFLTFPLGGVVRMFEGNCSLGSIDGLHHSILDLDENKYFVTKEAKNRIVDPHLSPQFGLKNQIFPIRRPREKFYCHGNSITCEKIDYFDWTDDTDYNLVFYLPVDGYVKGPKTYVVTDDLVLKESSPTSVLHLINHFQTPLNDLKEKVINIGLNECLSILKASLTSTAALTNGLGHLVIEEQEEGSVNLQRSVNKDLFHLI