AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84580.t1 MTR_7g066260 89.474 494 42 2 1 484 1 494 0.0 900
MS.gene84580.t1 MTR_7g066290 65.591 465 117 6 1 453 1 434 0.0 561
MS.gene84580.t1 MTR_7g066360 63.380 497 153 9 1 484 1 481 0.0 553
MS.gene84580.t1 MTR_7g066340 57.025 484 179 8 9 479 6 473 1.89e-176 504
MS.gene84580.t1 MTR_7g066570 56.660 503 170 12 1 466 1 492 2.32e-172 497
MS.gene84580.t1 MTR_1g041315 56.140 456 172 6 3 436 2 451 3.42e-169 486
MS.gene84580.t1 MTR_7g066350 60.265 453 153 11 11 448 5 445 1.20e-167 481
MS.gene84580.t1 MTR_7g012680 54.449 472 177 10 3 458 2 451 2.60e-161 465
MS.gene84580.t1 MTR_7g066400 52.597 462 159 10 11 448 8 433 2.16e-153 444
MS.gene84580.t1 MTR_7g058710 50.704 497 180 13 1 452 1 477 6.75e-150 437
MS.gene84580.t1 MTR_7g066310 50.746 469 161 7 12 479 4 403 1.08e-142 416
MS.gene84580.t1 MTR_7g066580 49.076 487 159 13 21 458 1 447 1.05e-134 397
MS.gene84580.t1 MTR_7g058700 49.111 450 146 8 27 452 531 921 1.19e-122 380
MS.gene84580.t1 MTR_7g066430 43.121 487 223 11 15 452 4 485 2.16e-115 349
MS.gene84580.t1 MTR_7g066430 25.523 239 158 7 5 229 247 479 3.16e-12 68.9
MS.gene84580.t1 MTR_1g014060 47.059 442 159 11 28 458 13 390 2.31e-112 338
MS.gene84580.t1 MTR_2g029400 44.142 478 149 12 6 442 5 405 4.66e-110 332
MS.gene84580.t1 MTR_7g066410 40.392 510 235 10 10 452 5 512 1.00e-109 335
MS.gene84580.t1 MTR_7g066410 26.556 241 157 8 2 229 273 506 2.37e-12 69.3
MS.gene84580.t1 MTR_7g066280 45.578 441 154 11 94 479 1 410 2.48e-108 328
MS.gene84580.t1 MTR_7g066280 25.483 259 133 10 11 229 146 384 4.71e-12 68.2
MS.gene84580.t1 MTR_7g066480 44.105 458 192 12 14 455 15 424 1.02e-100 309
MS.gene84580.t1 MTR_7g062300 40.461 477 244 8 6 450 3 471 5.54e-98 303
MS.gene84580.t1 MTR_7g063660 40.126 476 232 11 14 450 8 469 1.95e-97 302
MS.gene84580.t1 MTR_7g063880 40.456 482 235 11 5 453 1 463 1.32e-96 300
MS.gene84580.t1 MTR_7g062280 39.468 489 234 12 14 452 9 485 2.31e-95 297
MS.gene84580.t1 MTR_7g063900 42.052 497 224 17 1 450 1 480 8.45e-93 291
MS.gene84580.t1 MTR_7g066490 43.400 447 195 15 15 455 16 410 1.38e-92 288
MS.gene84580.t1 MTR_7g063820 41.649 485 229 14 9 450 3 476 2.54e-89 281
MS.gene84580.t1 MTR_7g063890 41.031 485 224 11 14 450 26 496 2.80e-88 280
MS.gene84580.t1 MTR_7g063920 38.608 474 217 8 5 450 1 428 1.05e-86 273
MS.gene84580.t1 MTR_7g063830 39.186 467 221 14 11 450 6 436 2.01e-86 273
MS.gene84580.t1 MTR_3g007740 39.619 472 211 15 14 450 8 440 5.98e-86 271
MS.gene84580.t1 MTR_7g063840 37.632 473 239 12 16 450 11 465 1.14e-82 264
MS.gene84580.t1 MTR_4g019310 37.374 495 239 16 12 448 5 486 2.95e-82 264
MS.gene84580.t1 MTR_3g065200 37.093 461 199 13 15 439 3 408 3.07e-79 254
MS.gene84580.t1 MTR_7g063670 38.478 460 232 13 16 450 16 449 1.84e-75 244
MS.gene84580.t1 MTR_4g017830 34.160 524 267 15 6 464 3 513 1.48e-74 244
MS.gene84580.t1 MTR_4g019340 34.937 478 243 13 16 440 39 501 2.78e-71 235
MS.gene84580.t1 MTR_4g017440 34.047 514 244 20 8 448 7 498 2.89e-67 224
MS.gene84580.t1 MTR_4g017410 33.605 491 264 17 9 449 3 481 2.37e-65 219
MS.gene84580.t1 MTR_4g017610 32.596 497 252 15 8 448 6 475 2.40e-65 219
MS.gene84580.t1 MTR_7g066680 46.667 300 93 5 213 448 38 334 5.39e-65 214
MS.gene84580.t1 MTR_7g066680 26.415 212 135 10 11 214 82 280 6.05e-11 64.3
MS.gene84580.t1 MTR_4g017470 30.566 530 245 15 11 471 8 483 8.49e-55 191
MS.gene84580.t1 MTR_4g017550 32.985 479 226 19 42 450 18 471 2.65e-54 189
MS.gene84580.t1 MTR_4g017550 27.948 229 124 8 15 222 247 455 1.22e-11 67.0
MS.gene84580.t1 MTR_7g066390 53.927 191 53 3 300 490 1 156 2.22e-52 174
MS.gene84580.t1 MTR_2g067310 54.396 182 39 3 20 201 53 190 3.99e-52 177
MS.gene84580.t1 MTR_7g063720 40.789 228 113 4 243 452 3 226 1.60e-41 149
MS.gene84580.t1 MTR_7g062270 46.552 174 85 4 16 187 11 178 1.21e-40 150
MS.gene84580.t1 MTR_8g023240 29.072 485 265 18 16 453 38 490 1.44e-38 148
MS.gene84580.t1 MTR_7g100420 35.224 335 171 9 149 452 78 397 1.38e-30 123
MS.gene84580.t1 MTR_7g100420 59.322 59 20 1 16 70 40 98 2.99e-12 68.6
MS.gene84580.t1 MTR_7g063690 32.734 278 112 8 16 286 13 222 2.40e-27 110
MS.gene84580.t1 MTR_7g063850 35.160 219 109 6 262 452 69 282 1.42e-26 109
MS.gene84580.t1 MTR_1g115440 29.804 255 139 7 5 235 1 239 3.83e-24 101
MS.gene84580.t1 MTR_1g115440 26.068 234 136 4 249 446 1 233 6.87e-17 80.5
MS.gene84580.t1 MTR_8g445860 30.769 234 124 8 245 445 3 231 1.35e-22 97.1
MS.gene84580.t1 MTR_8g445860 29.536 237 140 7 15 235 13 238 3.34e-22 95.9
MS.gene84580.t1 MTR_0150s0010 29.787 235 147 4 14 235 9 238 6.10e-22 95.1
MS.gene84580.t1 MTR_0150s0010 27.928 222 119 6 262 445 13 231 5.38e-19 86.7
MS.gene84580.t1 MTR_4g019240 40.870 115 54 5 11 115 9 119 1.08e-17 81.3
MS.gene84580.t1 MTR_1g115450 40.000 85 46 1 15 99 7 86 1.59e-14 71.2
MS.gene84580.t1 MTR_8g445910 40.000 95 48 3 15 105 8 97 4.26e-13 70.1
MS.gene84580.t1 MTR_8g044880 42.353 85 43 2 15 98 8 87 7.24e-13 69.3
MS.gene84580.t1 MTR_1g115455 41.176 85 45 1 15 99 9 88 8.88e-13 68.2
MS.gene84580.t1 MTR_0150s0030 37.895 95 50 3 15 105 8 97 1.81e-12 67.0
MS.gene84580.t1 MTR_7g063760 46.032 63 33 1 389 450 3 65 2.55e-12 62.8
MS.gene84580.t1 MTR_1g115470 41.053 95 49 2 17 109 8 97 2.62e-12 68.9
MS.gene84580.t1 MTR_8g445920 40.000 80 43 1 14 93 9 83 1.11e-11 62.0
MS.gene84580.t1 MTR_8g044890 40.000 80 43 1 14 93 9 83 1.11e-11 62.0
MS.gene84580.t1 MTR_7g063870 45.833 72 34 1 9 75 25 96 4.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84580.t1 AT5G01130 31.878 458 270 10 15 452 9 444 3.94e-56 194
MS.gene84580.t1 AT5G01120 30.346 491 285 14 16 456 10 493 1.05e-54 191
MS.gene84580.t1 AT5G01150 30.934 514 284 15 17 483 11 500 1.62e-52 185
MS.gene84580.t1 AT3G09140 29.783 507 273 13 12 453 6 494 3.85e-52 184
MS.gene84580.t1 AT5G43240 30.385 520 286 17 16 479 10 509 1.41e-51 183
MS.gene84580.t1 AT5G43240 30.385 520 286 17 16 479 10 509 1.41e-51 183
MS.gene84580.t1 AT5G43240 30.385 520 286 17 16 479 10 509 1.41e-51 183
MS.gene84580.t1 AT3G09140 28.224 535 273 13 12 453 6 522 7.13e-48 173
MS.gene84580.t1 AT5G01140 28.487 509 267 14 17 485 11 462 1.14e-47 171
MS.gene84580.t1 AT3G09110 33.025 324 189 9 17 324 11 322 1.05e-45 163
MS.gene84580.t1 AT3G09120 32.390 318 190 8 10 310 1 310 3.11e-41 150
MS.gene84580.t1 AT5G37320 29.532 491 278 18 10 448 1 475 1.44e-39 149
MS.gene84580.t1 AT5G43240 27.793 367 202 13 162 479 13 365 5.29e-18 85.9

Find 92 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTAAACCCTCTCTTTC+TGG 0.144408 7.3:+39797537 MS.gene84580:CDS
CTTACCATCTGATTCTAATA+AGG 0.223939 7.3:+39797167 MS.gene84580:CDS
GACAGACTTTATCTTTAAAA+AGG 0.227200 7.3:+39797104 MS.gene84580:CDS
TGTTGGGAATGGCTTTATTA+AGG 0.238339 7.3:+39796804 MS.gene84580:CDS
GATATTGAAGCAGTGAAATT+TGG 0.241924 7.3:+39796496 MS.gene84580:CDS
GATTTCTATAAGTGGTTATA+CGG 0.266948 7.3:-39796720 None:intergenic
CAAAGGACCATTAACAATTA+TGG 0.282360 7.3:+39797569 MS.gene84580:CDS
TACGCCTCCATTGAGTTTCT+AGG 0.282594 7.3:-39796604 None:intergenic
CGAAGTCACCTTGAGAGTTT+TGG 0.304893 7.3:+39796354 MS.gene84580:CDS
TAGCATTTCTTTGCAGGTAT+TGG 0.307775 7.3:-39796575 None:intergenic
GTTGAGTAGCATTTCTTTGC+AGG 0.309715 7.3:-39796581 None:intergenic
AAAGTCTGTCAGAGGAGTTT+TGG 0.323689 7.3:-39797091 None:intergenic
AAGTTCCAATTGGTAGTATC+TGG 0.332361 7.3:-39797467 None:intergenic
CTGGTTCTTGAGTCCAAAAT+TGG 0.338872 7.3:-39797448 None:intergenic
AATATCTATCAAAGCAGTTT+TGG 0.346758 7.3:-39798259 None:intergenic
TCCATCACCATAATTGTTAA+TGG 0.349593 7.3:-39797576 None:intergenic
GCAAGGACTGGCAGTCTTGT+AGG 0.369793 7.3:+39796680 MS.gene84580:CDS
AAACTTGTTCCAAGATCATT+AGG 0.370772 7.3:-39796868 None:intergenic
TGAATGCAGAGAGATGTTTA+AGG 0.380741 7.3:+39797382 MS.gene84580:CDS
TGTGTGATGCCTAATGATCT+TGG 0.396811 7.3:+39796859 MS.gene84580:CDS
AGCTTCTTAACCTTACCATT+AGG 0.407652 7.3:+39796442 MS.gene84580:CDS
ATCTTGATGAACACTATCTA+TGG 0.410521 7.3:+39796551 MS.gene84580:CDS
ATTTCCTCCACGTCATTAAG+AGG 0.412745 7.3:-39797663 None:intergenic
TTACCATCTGATTCTAATAA+GGG 0.416028 7.3:+39797168 MS.gene84580:CDS
GATTTCTATCCTATGGCATC+TGG 0.438641 7.3:+39796301 None:intergenic
TCTTGTAGGGGATATATGAA+TGG 0.446869 7.3:+39796694 MS.gene84580:CDS
CCTCCAGAAAGAGAGGGTTT+AGG 0.447772 7.3:-39797540 None:intergenic
CAAGGACTGGCAGTCTTGTA+GGG 0.455929 7.3:+39796681 MS.gene84580:CDS
TTAATAAAGCCATTCCCAAC+AGG 0.457135 7.3:-39796802 None:intergenic
GGTAAGCTGTTTCCAATCGT+TGG 0.464572 7.3:-39797150 None:intergenic
TAGATATGAAACAGCGTCAA+TGG 0.470976 7.3:-39797625 None:intergenic
AGTCTAGAAATAGTTCCTAA+TGG 0.475346 7.3:-39796457 None:intergenic
GTAAGCTGTTTCCAATCGTT+GGG 0.475614 7.3:-39797149 None:intergenic
GCATTTCTGATTTCTATAAG+TGG 0.478212 7.3:-39796728 None:intergenic
AAAACGGATTTGACTCCTGT+TGG 0.478327 7.3:+39796787 MS.gene84580:CDS
ACGCCTCCATTGAGTTTCTA+GGG 0.484998 7.3:-39796603 None:intergenic
AAAGTTGTCTATGCTGAAGC+AGG 0.489330 7.3:+39796394 MS.gene84580:CDS
GATTTGACTCCTGTTGGGAA+TGG 0.494885 7.3:+39796793 MS.gene84580:CDS
CAAAGCTGCTGCCGTCAAAA+CGG 0.496324 7.3:+39796771 MS.gene84580:CDS
AAGAACCAGATACTACCAAT+TGG 0.496758 7.3:+39797462 MS.gene84580:CDS
TATTTCTAGACTTGTGGCTA+AGG 0.498118 7.3:+39796468 MS.gene84580:CDS
AAACGGATTTGACTCCTGTT+GGG 0.499817 7.3:+39796788 MS.gene84580:CDS
GGTAATTGTAACCCAACGAT+TGG 0.505105 7.3:+39797138 MS.gene84580:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.3:+39797309 MS.gene84580:CDS
GTTGACGCACAAGTTCCAAT+TGG 0.529412 7.3:-39797477 None:intergenic
AGGAACTATTTCTAGACTTG+TGG 0.530374 7.3:+39796462 MS.gene84580:CDS
ACCATTAACAATTATGGTGA+TGG 0.533641 7.3:+39797575 MS.gene84580:CDS
CTTGTAGGGGATATATGAAT+GGG 0.534871 7.3:+39796695 MS.gene84580:CDS
TTTCTAACATTTCCCTTGGG+AGG 0.537218 7.3:+39797288 MS.gene84580:CDS
TCAACATCCGCTTTGACAAA+CGG 0.540818 7.3:+39797830 MS.gene84580:CDS
AGAAATAGTTCCTAATGGTA+AGG 0.545251 7.3:-39796452 None:intergenic
ACTCAACCCTAGAAACTCAA+TGG 0.548659 7.3:+39796597 MS.gene84580:CDS
TTTCATTAGTATTGGTGCAG+AGG 0.552646 7.3:+39797686 MS.gene84580:CDS
CATTAGTATTGGTGCAGAGG+AGG 0.556062 7.3:+39797689 MS.gene84580:CDS
AGAGAGATGTTTAAGGTCAC+AGG 0.559907 7.3:+39797389 MS.gene84580:CDS
ATACCCTTATTAGAATCAGA+TGG 0.560811 7.3:-39797171 None:intergenic
ATCAGAAATGCATCTGTGGA+AGG 0.565067 7.3:+39796740 MS.gene84580:CDS
TTAAAGATAAAGTCTGTCAG+AGG 0.571141 7.3:-39797099 None:intergenic
CACTTTGATACAGTGTACTC+AGG 0.571454 7.3:-39796522 None:intergenic
GACATATCCTCCAGAAAGAG+AGG 0.571735 7.3:-39797547 None:intergenic
TTTAGGATCAACAAGTTTCG+CGG 0.573326 7.3:-39797523 None:intergenic
TGTCTATGCTGAAGCAGGGA+AGG 0.574622 7.3:+39796399 MS.gene84580:CDS
TTAGGATCAACAAGTTTCGC+GGG 0.576372 7.3:-39797522 None:intergenic
CATTTGCAACACTCCTCCCA+AGG 0.578180 7.3:-39797301 None:intergenic
TTCATATCTAGAAAGAATGA+AGG 0.578901 7.3:+39797638 MS.gene84580:CDS
AATTATGGTGATGGACGACT+TGG 0.579811 7.3:+39797584 MS.gene84580:CDS
CTTTCTGGAGGATATGTCAA+AGG 0.584702 7.3:+39797552 MS.gene84580:CDS
GGCTTCTTCAGGTTGTACAA+TGG 0.592081 7.3:-39798282 None:intergenic
ACATATCCTCCAGAAAGAGA+GGG 0.601393 7.3:-39797546 None:intergenic
GTTGCAATGCCAGATGCCAT+AGG 0.603282 7.3:-39796310 None:intergenic
CTTGAGGCCGTTTGTCAAAG+CGG 0.611309 7.3:-39797837 None:intergenic
ACAGCGTCAATGGATGACAT+TGG 0.611356 7.3:-39797615 None:intergenic
TTACATATGCTTCAGACACA+CGG 0.611757 7.3:+39796889 MS.gene84580:CDS
GTTGTCGACCAAAACTCTCA+AGG 0.613169 7.3:-39796362 None:intergenic
CTTGCACGTAAAATACTGCA+AGG 0.613573 7.3:-39796662 None:intergenic
TTTCCTCCACGTCATTAAGA+GGG 0.615237 7.3:-39797662 None:intergenic
GTTTGTCAAAGCGGATGTTG+AGG 0.622650 7.3:-39797828 None:intergenic
AGAAATCAGAAATGCATCTG+TGG 0.624051 7.3:+39796736 MS.gene84580:CDS
TCAACTTGCACGTTTGATAG+CGG 0.627462 7.3:+39797495 MS.gene84580:CDS
ATTTGCAACACTCCTCCCAA+GGG 0.630391 7.3:-39797300 None:intergenic
AAGTTGTCTATGCTGAAGCA+GGG 0.631833 7.3:+39796395 MS.gene84580:CDS
AACGGCCTCAAGCAGTACAT+AGG 0.634113 7.3:+39797848 MS.gene84580:CDS
CCTAAACCCTCTCTTTCTGG+AGG 0.638053 7.3:+39797540 MS.gene84580:CDS
GTACAACCTGAAGAAGCCAA+AGG 0.662118 7.3:+39798287 MS.gene84580:CDS
AAGGACTGGCAGTCTTGTAG+GGG 0.662149 7.3:+39796682 MS.gene84580:CDS
GAAGGTCCCTCTTAATGACG+TGG 0.665769 7.3:+39797656 MS.gene84580:CDS
ACTAACCTATGTACTGCTTG+AGG 0.678228 7.3:-39797853 None:intergenic
GCAACTGAATCACTTGAACA+AGG 0.688328 7.3:+39796328 MS.gene84580:CDS
GGTCCCTCTTAATGACGTGG+AGG 0.689620 7.3:+39797659 MS.gene84580:CDS
TTGCACGTAAAATACTGCAA+GGG 0.693711 7.3:-39796661 None:intergenic
CAACCCTAGAAACTCAATGG+AGG 0.697460 7.3:+39796600 MS.gene84580:CDS
ACACGGACTAAATGACATAG+CGG 0.746163 7.3:+39796906 MS.gene84580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGTTAATAATTTTTAAT+TGG + chr7.3:39798167-39798186 MS.gene84580:intron 10.0%
!! TTTAAAAAGGAAAAAATTCT+TGG + chr7.3:39797117-39797136 MS.gene84580:CDS 15.0%
!! AAAAGAAACATTCAAATCAT+TGG + chr7.3:39797915-39797934 MS.gene84580:intron 20.0%
!! ACAATATTTGATTGCATATA+TGG + chr7.3:39797771-39797790 MS.gene84580:intron 20.0%
!! ATAAATAATAAGTACTACGA+CGG - chr7.3:39798004-39798023 None:intergenic 20.0%
!!! TACTAATGTAAAGTTTTGTT+TGG - chr7.3:39797890-39797909 None:intergenic 20.0%
! AACACTAGTTATCAACAAAA+AGG + chr7.3:39796942-39796961 MS.gene84580:intron 25.0%
! AACTAAATATTGTTTCAACC+AGG + chr7.3:39798090-39798109 MS.gene84580:intron 25.0%
! GATTTCTATAAGTGGTTATA+CGG - chr7.3:39796723-39796742 None:intergenic 25.0%
! TTACCATCTGATTCTAATAA+GGG + chr7.3:39797168-39797187 MS.gene84580:CDS 25.0%
! TTCATATCTAGAAAGAATGA+AGG + chr7.3:39797638-39797657 MS.gene84580:CDS 25.0%
!! AATATCTATCAAAGCAGTTT+TGG - chr7.3:39798262-39798281 None:intergenic 25.0%
!! AATATTTCTTGTTTCAGACT+CGG + chr7.3:39797740-39797759 MS.gene84580:intron 25.0%
!! GACAGACTTTATCTTTAAAA+AGG + chr7.3:39797104-39797123 MS.gene84580:CDS 25.0%
!! GAGGAAATTTTCATTAGTAT+TGG + chr7.3:39797678-39797697 MS.gene84580:CDS 25.0%
!!! AAATAAGTTTTTATTTGCGC+AGG + chr7.3:39797038-39797057 MS.gene84580:intron 25.0%
!!! AACTGCTACTTTTATAATTG+CGG + chr7.3:39796828-39796847 MS.gene84580:CDS 25.0%
AAAGGAAAAAGAAGAAGCTT+GGG + chr7.3:39798305-39798324 MS.gene84580:CDS 30.0%
ACCATTAACAATTATGGTGA+TGG + chr7.3:39797575-39797594 MS.gene84580:CDS 30.0%
ACTAGTTATCAACAAAAAGG+AGG + chr7.3:39796945-39796964 MS.gene84580:intron 30.0%
AGAAATAGTTCCTAATGGTA+AGG - chr7.3:39796455-39796474 None:intergenic 30.0%
AGTCTAGAAATAGTTCCTAA+TGG - chr7.3:39796460-39796479 None:intergenic 30.0%
ATACCCTTATTAGAATCAGA+TGG - chr7.3:39797174-39797193 None:intergenic 30.0%
ATCTTGATGAACACTATCTA+TGG + chr7.3:39796551-39796570 MS.gene84580:CDS 30.0%
CAAAGGACCATTAACAATTA+TGG + chr7.3:39797569-39797588 MS.gene84580:CDS 30.0%
CTTACCATCTGATTCTAATA+AGG + chr7.3:39797167-39797186 MS.gene84580:CDS 30.0%
GATATTGAAGCAGTGAAATT+TGG + chr7.3:39796496-39796515 MS.gene84580:CDS 30.0%
GCATTTCTGATTTCTATAAG+TGG - chr7.3:39796731-39796750 None:intergenic 30.0%
TCCATCACCATAATTGTTAA+TGG - chr7.3:39797579-39797598 None:intergenic 30.0%
TCTTTATATCTGCATGTACA+TGG + chr7.3:39798203-39798222 MS.gene84580:intron 30.0%
TTAAAGATAAAGTCTGTCAG+AGG - chr7.3:39797102-39797121 None:intergenic 30.0%
! AAACTTGTTCCAAGATCATT+AGG - chr7.3:39796871-39796890 None:intergenic 30.0%
! AGTTTTCTAACATTTCCCTT+GGG + chr7.3:39797285-39797304 MS.gene84580:CDS 30.0%
! TAGTTTTCTAACATTTCCCT+TGG + chr7.3:39797284-39797303 MS.gene84580:CDS 30.0%
AAGAACCAGATACTACCAAT+TGG + chr7.3:39797462-39797481 MS.gene84580:CDS 35.0%
AATTGTCATCGAATGAAGCA+TGG + chr7.3:39798138-39798157 MS.gene84580:intron 35.0%
AGAAATCAGAAATGCATCTG+TGG + chr7.3:39796736-39796755 MS.gene84580:CDS 35.0%
AGCTTCTTAACCTTACCATT+AGG + chr7.3:39796442-39796461 MS.gene84580:CDS 35.0%
CAAAGGAAAAAGAAGAAGCT+TGG + chr7.3:39798304-39798323 MS.gene84580:CDS 35.0%
CCAAAATTGGCAAAAATACG+AGG - chr7.3:39797438-39797457 None:intergenic 35.0%
CTTACTTCTTGATCCAACTT+CGG - chr7.3:39798062-39798081 None:intergenic 35.0%
CTTGTAGGGGATATATGAAT+GGG + chr7.3:39796695-39796714 MS.gene84580:CDS 35.0%
TAGATATGAAACAGCGTCAA+TGG - chr7.3:39797628-39797647 None:intergenic 35.0%
TAGCATTTCTTTGCAGGTAT+TGG - chr7.3:39796578-39796597 None:intergenic 35.0%
TCTTGTAGGGGATATATGAA+TGG + chr7.3:39796694-39796713 MS.gene84580:CDS 35.0%
TGAATGCAGAGAGATGTTTA+AGG + chr7.3:39797382-39797401 MS.gene84580:CDS 35.0%
TGATTGCATATATGGTTGCA+GGG + chr7.3:39797779-39797798 MS.gene84580:intron 35.0%
TTAATAAAGCCATTCCCAAC+AGG - chr7.3:39796805-39796824 None:intergenic 35.0%
TTACATATGCTTCAGACACA+CGG + chr7.3:39796889-39796908 MS.gene84580:CDS 35.0%
TTGATTGCATATATGGTTGC+AGG + chr7.3:39797778-39797797 MS.gene84580:intron 35.0%
TTGCACGTAAAATACTGCAA+GGG - chr7.3:39796664-39796683 None:intergenic 35.0%
! AAGTTCCAATTGGTAGTATC+TGG - chr7.3:39797470-39797489 None:intergenic 35.0%
! CAAGCTTCTTCTTTTTCCTT+TGG - chr7.3:39798306-39798325 None:intergenic 35.0%
! TTTAGGATCAACAAGTTTCG+CGG - chr7.3:39797526-39797545 None:intergenic 35.0%
!! AGGAACTATTTCTAGACTTG+TGG + chr7.3:39796462-39796481 MS.gene84580:CDS 35.0%
!! CCTCGTATTTTTGCCAATTT+TGG + chr7.3:39797435-39797454 MS.gene84580:CDS 35.0%
!! TATTTCTAGACTTGTGGCTA+AGG + chr7.3:39796468-39796487 MS.gene84580:CDS 35.0%
!! TGTTGGGAATGGCTTTATTA+AGG + chr7.3:39796804-39796823 MS.gene84580:CDS 35.0%
!! TTTCATTAGTATTGGTGCAG+AGG + chr7.3:39797686-39797705 MS.gene84580:CDS 35.0%
AAAGTTGTCTATGCTGAAGC+AGG + chr7.3:39796394-39796413 MS.gene84580:CDS 40.0%
AAGTTGTCTATGCTGAAGCA+GGG + chr7.3:39796395-39796414 MS.gene84580:CDS 40.0%
ACATATCCTCCAGAAAGAGA+GGG - chr7.3:39797549-39797568 None:intergenic 40.0%
ACTAACCTATGTACTGCTTG+AGG - chr7.3:39797856-39797875 None:intergenic 40.0%
ACTCAACCCTAGAAACTCAA+TGG + chr7.3:39796597-39796616 MS.gene84580:CDS 40.0%
ATCAGAAATGCATCTGTGGA+AGG + chr7.3:39796740-39796759 MS.gene84580:CDS 40.0%
ATTTCCTCCACGTCATTAAG+AGG - chr7.3:39797666-39797685 None:intergenic 40.0%
CACTTTGATACAGTGTACTC+AGG - chr7.3:39796525-39796544 None:intergenic 40.0%
CTTGCACGTAAAATACTGCA+AGG - chr7.3:39796665-39796684 None:intergenic 40.0%
GAGAACACGAATTTGAATCC+TGG - chr7.3:39798111-39798130 None:intergenic 40.0%
GCAACTGAATCACTTGAACA+AGG + chr7.3:39796328-39796347 MS.gene84580:CDS 40.0%
GGTAATTGTAACCCAACGAT+TGG + chr7.3:39797138-39797157 MS.gene84580:CDS 40.0%
GTTGAGTAGCATTTCTTTGC+AGG - chr7.3:39796584-39796603 None:intergenic 40.0%
TATATCTGCATGTACATGGC+AGG + chr7.3:39798207-39798226 MS.gene84580:intron 40.0%
TCAACATCCGCTTTGACAAA+CGG + chr7.3:39797830-39797849 MS.gene84580:CDS 40.0%
TCAACTTGCACGTTTGATAG+CGG + chr7.3:39797495-39797514 MS.gene84580:CDS 40.0%
TCCACGTTATGAAAGCAGAA+AGG + chr7.3:39798023-39798042 MS.gene84580:intron 40.0%
TCCTTTCTGCTTTCATAACG+TGG - chr7.3:39798027-39798046 None:intergenic 40.0%
TGTGTGATGCCTAATGATCT+TGG + chr7.3:39796859-39796878 MS.gene84580:CDS 40.0%
TTAGGATCAACAAGTTTCGC+GGG - chr7.3:39797525-39797544 None:intergenic 40.0%
TTTCCTCCACGTCATTAAGA+GGG - chr7.3:39797665-39797684 None:intergenic 40.0%
TTTCTAACATTTCCCTTGGG+AGG + chr7.3:39797288-39797307 MS.gene84580:CDS 40.0%
! AAAACGGATTTGACTCCTGT+TGG + chr7.3:39796787-39796806 MS.gene84580:CDS 40.0%
! AAACGGATTTGACTCCTGTT+GGG + chr7.3:39796788-39796807 MS.gene84580:CDS 40.0%
! AAAGTCTGTCAGAGGAGTTT+TGG - chr7.3:39797094-39797113 None:intergenic 40.0%
! ACACGGACTAAATGACATAG+CGG + chr7.3:39796906-39796925 MS.gene84580:CDS 40.0%
! AGAGAGATGTTTAAGGTCAC+AGG + chr7.3:39797389-39797408 MS.gene84580:CDS 40.0%
! AGGAGTCAAATCCGTTTTGA+CGG - chr7.3:39796785-39796804 None:intergenic 40.0%
! AGTATTTTACGTGCAAGGAC+TGG + chr7.3:39796668-39796687 MS.gene84580:CDS 40.0%
! CTGGTTCTTGAGTCCAAAAT+TGG - chr7.3:39797451-39797470 None:intergenic 40.0%
! CTTGCAGTATTTTACGTGCA+AGG + chr7.3:39796663-39796682 MS.gene84580:CDS 40.0%
! CTTTCTGGAGGATATGTCAA+AGG + chr7.3:39797552-39797571 MS.gene84580:CDS 40.0%
! GTAAGCTGTTTCCAATCGTT+GGG - chr7.3:39797152-39797171 None:intergenic 40.0%
!! AATTATGGTGATGGACGACT+TGG + chr7.3:39797584-39797603 MS.gene84580:CDS 40.0%
!! CTTTTTCCTTTGGCTTCTTC+AGG - chr7.3:39798296-39798315 None:intergenic 40.0%
AAGTCCTGGTAATCCGAAGT+TGG + chr7.3:39798046-39798065 MS.gene84580:intron 45.0%
ACAGCGTCAATGGATGACAT+TGG - chr7.3:39797618-39797637 None:intergenic 45.0%
ACGCCTCCATTGAGTTTCTA+GGG - chr7.3:39796606-39796625 None:intergenic 45.0%
ATTGGTGCAGAGGAGGTAAA+GGG + chr7.3:39797696-39797715 MS.gene84580:intron 45.0%
ATTTGCAACACTCCTCCCAA+GGG - chr7.3:39797303-39797322 None:intergenic 45.0%
CAACCCTAGAAACTCAATGG+AGG + chr7.3:39796600-39796619 MS.gene84580:CDS 45.0%
GACATATCCTCCAGAAAGAG+AGG - chr7.3:39797550-39797569 None:intergenic 45.0%
GATCCTAAACCCTCTCTTTC+TGG + chr7.3:39797537-39797556 MS.gene84580:CDS 45.0%
GATTTGACTCCTGTTGGGAA+TGG + chr7.3:39796793-39796812 MS.gene84580:CDS 45.0%
GTACAACCTGAAGAAGCCAA+AGG + chr7.3:39798287-39798306 MS.gene84580:CDS 45.0%
GTTGACGCACAAGTTCCAAT+TGG - chr7.3:39797480-39797499 None:intergenic 45.0%
GTTGTCGACCAAAACTCTCA+AGG - chr7.3:39796365-39796384 None:intergenic 45.0%
GTTTGTCAAAGCGGATGTTG+AGG - chr7.3:39797831-39797850 None:intergenic 45.0%
TACGCCTCCATTGAGTTTCT+AGG - chr7.3:39796607-39796626 None:intergenic 45.0%
TATTGGTGCAGAGGAGGTAA+AGG + chr7.3:39797695-39797714 MS.gene84580:intron 45.0%
TGAAAGCAGAAAGGAAGTCC+TGG + chr7.3:39798032-39798051 MS.gene84580:intron 45.0%
TGATCCAACTTCGGATTACC+AGG - chr7.3:39798053-39798072 None:intergenic 45.0%
! CGAAGTCACCTTGAGAGTTT+TGG + chr7.3:39796354-39796373 MS.gene84580:CDS 45.0%
! GGTAAGCTGTTTCCAATCGT+TGG - chr7.3:39797153-39797172 None:intergenic 45.0%
!! CATTAGTATTGGTGCAGAGG+AGG + chr7.3:39797689-39797708 MS.gene84580:CDS 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG + chr7.3:39797309-39797328 MS.gene84580:CDS 45.0%
!! GGCTTCTTCAGGTTGTACAA+TGG - chr7.3:39798285-39798304 None:intergenic 45.0%
AACGGCCTCAAGCAGTACAT+AGG + chr7.3:39797848-39797867 MS.gene84580:CDS 50.0%
CAAAGCTGCTGCCGTCAAAA+CGG + chr7.3:39796771-39796790 MS.gene84580:CDS 50.0%
CATTTGCAACACTCCTCCCA+AGG - chr7.3:39797304-39797323 None:intergenic 50.0%
CCTAAACCCTCTCTTTCTGG+AGG + chr7.3:39797540-39797559 MS.gene84580:CDS 50.0%
CCTCCAGAAAGAGAGGGTTT+AGG - chr7.3:39797543-39797562 None:intergenic 50.0%
CTTGAGGCCGTTTGTCAAAG+CGG - chr7.3:39797840-39797859 None:intergenic 50.0%
GAAGGTCCCTCTTAATGACG+TGG + chr7.3:39797656-39797675 MS.gene84580:CDS 50.0%
TGTCTATGCTGAAGCAGGGA+AGG + chr7.3:39796399-39796418 MS.gene84580:CDS 50.0%
! AAGGACTGGCAGTCTTGTAG+GGG + chr7.3:39796682-39796701 MS.gene84580:CDS 50.0%
! CAAGGACTGGCAGTCTTGTA+GGG + chr7.3:39796681-39796700 MS.gene84580:CDS 50.0%
GGTCCCTCTTAATGACGTGG+AGG + chr7.3:39797659-39797678 MS.gene84580:CDS 55.0%
! GCAAGGACTGGCAGTCTTGT+AGG + chr7.3:39796680-39796699 MS.gene84580:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 39796313 39798350 39796313 ID=MS.gene84580
chr7.3 mRNA 39796313 39798350 39796313 ID=MS.gene84580.t1;Parent=MS.gene84580
chr7.3 exon 39796313 39796948 39796313 ID=MS.gene84580.t1.exon1;Parent=MS.gene84580.t1
chr7.3 CDS 39796313 39796948 39796313 ID=cds.MS.gene84580.t1;Parent=MS.gene84580.t1
chr7.3 exon 39797060 39797710 39797060 ID=MS.gene84580.t1.exon2;Parent=MS.gene84580.t1
chr7.3 CDS 39797060 39797710 39797060 ID=cds.MS.gene84580.t1;Parent=MS.gene84580.t1
chr7.3 exon 39797800 39797869 39797800 ID=MS.gene84580.t1.exon3;Parent=MS.gene84580.t1
chr7.3 CDS 39797800 39797869 39797800 ID=cds.MS.gene84580.t1;Parent=MS.gene84580.t1
chr7.3 exon 39798229 39798350 39798229 ID=MS.gene84580.t1.exon4;Parent=MS.gene84580.t1
chr7.3 CDS 39798229 39798350 39798229 ID=cds.MS.gene84580.t1;Parent=MS.gene84580.t1
Gene Sequence

>MS.gene84580

ATGGCATCTGGCATTGCAACTGAATCACTTGAACAAGGTGACGAAGTCACCTTGAGAGTTTTGGTCGACAACGAAATAAACAAAGTTGTCTATGCTGAAGCAGGGAAGGATTTTGTCGATGCTCTTTTCAGCTTCTTAACCTTACCATTAGGAACTATTTCTAGACTTGTGGCTAAGGAGTCAGATATTGAAGCAGTGAAATTTGGCAGCCTGAGTACACTGTATCAAAGTGTGTCAGATCTTGATGAACACTATCTATGGTCCAATACCTGCAAAGAAATGCTACTCAACCCTAGAAACTCAATGGAGGCGTACTGTCAACAGCTCAAACTGAATATTGATGATACACCCTTGCAGTATTTTACGTGCAAGGACTGGCAGTCTTGTAGGGGATATATGAATGGGAGCCGTATAACCACTTATAGAAATCAGAAATGCATCTGTGGAAGGCTTTTGAACAAAGCTGCTGCCGTCAAAACGGATTTGACTCCTGTTGGGAATGGCTTTATTAAGGAAACTGCTACTTTTATAATTGCGGATGATCTTTGTGTGATGCCTAATGATCTTGGAACAAGTTTACATATGCTTCAGACACACGGACTAAATGACATAGCGGATGTTGAGAAAAAAACACTAGTTATCAACAAAAAGGAGGCATGTTTTCTCAGTTTCTATATATCATCATCTTTTTTGTTGATTTTTTAGATGAATTTATATTATTCTTAAAATAAGTTTTTATTTGCGCAGGTAGTTGATCTTCTCAAATTGTCGTTGCTCTCCAAAACTCCTCTGACAGACTTTATCTTTAAAAAGGAAAAAATTCTTGGTAATTGTAACCCAACGATTGGAAACAGCTTACCATCTGATTCTAATAAGGGTATGAAGAATATGATTGTGAAAGTATTGCTAAGAAAATCAAAAAGAAAAATTTTGTTTGCTACAGCAAATGAAGATTTTGCAGATTTTCTTTTTAGTTTTCTAACATTTCCCTTGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCTTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAATGCAGAGAGATGTTTAAGGTCACAGGAACTCAAAGACAAACTAACTAAGCCTCGTATTTTTGCCAATTTTGGACTCAAGAACCAGATACTACCAATTGGAACTTGTGCGTCAACTTGCACGTTTGATAGCGGTGAACCCGCGAAACTTGTTGATCCTAAACCCTCTCTTTCTGGAGGATATGTCAAAGGACCATTAACAATTATGGTGATGGACGACTTGGTTGTGACTCCAATGTCATCCATTGACGCTGTTTCATATCTAGAAAGAATGAAGGTCCCTCTTAATGACGTGGAGGAAATTTTCATTAGTATTGGTGCAGAGGAGGTAAAGGGAGTGTGCGAGACTTTCATTTAAATATTTCTTGTTTCAGACTCGGAACAACTAACAATATTTGATTGCATATATGGTTGCAGGGTCTCAGCATACTAAAAGCTTCGTTGACCTCAACATCCGCTTTGACAAACGGCCTCAAGCAGTACATAGGTTAGTACAGCATTCAACCAAACAAAACTTTACATTAGTATTTATAAAAGAAACATTCAAATCATTGGTTTTATACACTTTTTGCGTAAAATAAAATTATCATCAATATTCATTTAGCATGCATATCGCATCCGTCGTAGTACTTATTATTTATCCACGTTATGAAAGCAGAAAGGAAGTCCTGGTAATCCGAAGTTGGATCAAGAAGTAAGTAAAGTCTAACTAAATATTGTTTCAACCAGGATTCAAATTCGTGTTCTCTCAAAAAAATTGTCATCGAATGAAGCATGGTTGTTGTCAAGTTAATAATTTTTAATTGGTACTAATTACACTTCTTTATATCTGCATGTACATGGCAGGAAGTTCAACTGTTCAAGCTAATTTGTCATCCAAAACTGCTTTGATAGATATTCCATTGTACAACCTGAAGAAGCCAAAGGAAAAAGAAGAAGCTTGGGCTAATCTATGTTTTGATAACTGA
Protein sequence

>MS.gene84580.t1

MASGIATESLEQGDEVTLRVLVDNEINKVVYAEAGKDFVDALFSFLTLPLGTISRLVAKESDIEAVKFGSLSTLYQSVSDLDEHYLWSNTCKEMLLNPRNSMEAYCQQLKLNIDDTPLQYFTCKDWQSCRGYMNGSRITTYRNQKCICGRLLNKAAAVKTDLTPVGNGFIKETATFIIADDLCVMPNDLGTSLHMLQTHGLNDIADVEKKTLVVDLLKLSLLSKTPLTDFIFKKEKILGNCNPTIGNSLPSDSNKGMKNMIVKVLLRKSKRKILFATANEDFADFLFSFLTFPLGGVLQMLEGFSSLSCIDILYKSMTELNAERCLRSQELKDKLTKPRIFANFGLKNQILPIGTCASTCTFDSGEPAKLVDPKPSLSGGYVKGPLTIMVMDDLVVTPMSSIDAVSYLERMKVPLNDVEEIFISIGAEEGLSILKASLTSTSALTNGLKQYIGSSTVQANLSSKTALIDIPLYNLKKPKEKEEAWANLCFDN