AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001109

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001109.t1 MTR_7g058710 62.800 500 153 8 5 498 6 478 0.0 588
MS.gene001109.t1 MTR_7g066570 61.386 505 166 4 1 499 1 482 0.0 584
MS.gene001109.t1 MTR_2g029400 59.674 491 108 8 1 487 1 405 0.0 521
MS.gene001109.t1 MTR_7g012680 57.400 500 161 5 1 500 1 448 0.0 519
MS.gene001109.t1 MTR_7g066680 81.544 298 24 1 228 494 38 335 2.25e-172 489
MS.gene001109.t1 MTR_7g066260 53.386 502 184 9 6 500 7 465 5.70e-168 484
MS.gene001109.t1 MTR_7g066260 24.895 237 161 8 266 491 5 235 6.59e-14 74.3
MS.gene001109.t1 MTR_7g058700 57.411 479 111 6 26 498 531 922 1.14e-167 498
MS.gene001109.t1 MTR_7g066340 53.908 499 185 9 8 504 6 461 2.14e-160 464
MS.gene001109.t1 MTR_7g066580 52.621 496 170 10 20 501 1 445 5.86e-158 457
MS.gene001109.t1 MTR_1g041315 50.716 489 195 8 1 481 1 451 2.33e-152 444
MS.gene001109.t1 MTR_7g066350 52.727 495 171 12 10 494 5 446 2.44e-150 437
MS.gene001109.t1 MTR_7g066290 48.606 502 181 10 2 497 3 433 2.46e-136 401
MS.gene001109.t1 MTR_7g066400 47.737 486 192 8 10 493 8 433 2.88e-135 399
MS.gene001109.t1 MTR_7g066430 44.489 499 255 6 14 502 4 490 1.69e-130 389
MS.gene001109.t1 MTR_7g066430 25.591 254 155 6 4 244 247 479 9.24e-12 67.8
MS.gene001109.t1 MTR_7g066410 44.444 504 259 7 15 498 11 513 1.84e-127 381
MS.gene001109.t1 MTR_7g066410 28.740 254 149 8 2 244 274 506 3.06e-15 78.6
MS.gene001109.t1 MTR_7g066360 47.047 508 199 12 1 497 1 449 3.09e-126 377
MS.gene001109.t1 MTR_7g066310 46.138 492 152 11 11 499 4 385 8.68e-121 360
MS.gene001109.t1 MTR_7g063900 39.645 507 269 11 4 498 2 483 4.07e-96 300
MS.gene001109.t1 MTR_7g062300 37.475 499 270 10 5 493 3 469 2.60e-95 297
MS.gene001109.t1 MTR_7g063660 37.500 504 264 12 10 498 5 472 3.96e-94 294
MS.gene001109.t1 MTR_7g063660 26.446 242 135 8 271 491 4 223 6.48e-15 77.4
MS.gene001109.t1 MTR_7g063880 40.079 509 248 17 1 498 1 463 1.10e-93 293
MS.gene001109.t1 MTR_7g062280 37.132 509 278 12 6 498 4 486 1.22e-93 293
MS.gene001109.t1 MTR_7g063820 39.157 498 274 13 8 498 4 479 9.71e-93 291
MS.gene001109.t1 MTR_7g063890 40.792 505 262 11 13 505 26 505 2.27e-92 290
MS.gene001109.t1 MTR_7g063840 36.220 508 274 15 1 498 1 468 3.57e-85 271
MS.gene001109.t1 MTR_4g019310 35.616 511 272 15 11 493 5 486 1.79e-84 270
MS.gene001109.t1 MTR_7g066280 40.319 439 183 10 93 499 1 392 5.75e-83 263
MS.gene001109.t1 MTR_3g007740 36.473 499 241 11 13 498 8 443 7.07e-82 261
MS.gene001109.t1 MTR_7g063830 35.156 512 247 14 8 504 4 445 5.44e-81 259
MS.gene001109.t1 MTR_7g063920 34.476 496 259 8 4 498 1 431 8.79e-81 258
MS.gene001109.t1 MTR_1g014060 58.929 224 79 3 23 246 9 219 9.56e-81 257
MS.gene001109.t1 MTR_1g014060 50.739 203 82 3 297 499 202 386 5.55e-52 181
MS.gene001109.t1 MTR_3g065200 34.172 477 237 11 14 484 3 408 5.50e-72 236
MS.gene001109.t1 MTR_7g063670 34.413 494 257 11 15 498 16 452 6.91e-72 236
MS.gene001109.t1 MTR_4g017440 33.524 525 298 14 1 497 1 502 1.17e-70 234
MS.gene001109.t1 MTR_4g017610 33.659 511 276 14 7 494 6 476 5.12e-70 231
MS.gene001109.t1 MTR_4g017610 26.087 253 169 6 267 506 4 251 4.45e-11 65.5
MS.gene001109.t1 MTR_4g017830 33.586 527 288 18 4 496 2 500 6.42e-70 233
MS.gene001109.t1 MTR_4g019340 34.132 501 262 14 15 485 39 501 8.91e-69 229
MS.gene001109.t1 MTR_4g019340 33.333 114 69 3 4 117 293 399 8.16e-12 67.8
MS.gene001109.t1 MTR_4g017410 33.462 520 280 17 8 498 3 485 1.04e-68 229
MS.gene001109.t1 MTR_7g066480 38.718 390 209 8 13 394 15 382 2.71e-68 226
MS.gene001109.t1 MTR_7g066480 50.000 78 39 0 425 502 349 426 3.93e-16 80.9
MS.gene001109.t1 MTR_7g066490 41.349 341 155 8 14 346 16 319 2.69e-65 217
MS.gene001109.t1 MTR_7g066490 52.564 78 37 0 425 502 335 412 1.16e-16 82.4
MS.gene001109.t1 MTR_4g017470 29.468 526 285 11 4 498 1 471 7.36e-57 197
MS.gene001109.t1 MTR_4g017550 32.857 490 258 17 41 495 18 471 2.85e-53 187
MS.gene001109.t1 MTR_4g017550 25.200 250 143 7 14 242 247 473 1.91e-11 66.6
MS.gene001109.t1 MTR_7g063720 38.362 232 117 4 276 503 23 232 2.42e-42 151
MS.gene001109.t1 MTR_7g063720 25.431 232 138 6 14 244 23 220 8.94e-14 71.6
MS.gene001109.t1 MTR_7g062270 40.704 199 103 4 1 193 1 190 3.23e-37 141
MS.gene001109.t1 MTR_2g067310 45.029 171 51 4 26 196 59 186 2.93e-32 124
MS.gene001109.t1 MTR_8g023240 25.151 497 313 18 15 497 38 489 1.62e-27 116
MS.gene001109.t1 MTR_7g066390 38.122 181 53 4 317 497 1 122 9.55e-27 106
MS.gene001109.t1 MTR_1g115440 30.469 256 150 7 4 249 1 238 1.07e-24 103
MS.gene001109.t1 MTR_1g115440 29.412 238 141 8 270 490 5 232 1.33e-21 94.4
MS.gene001109.t1 MTR_7g063850 29.154 319 177 9 190 498 4 283 3.81e-24 102
MS.gene001109.t1 MTR_7g100420 30.838 334 198 9 164 493 89 393 1.91e-23 102
MS.gene001109.t1 MTR_7g100420 66.667 42 14 0 15 56 40 81 1.45e-11 66.6
MS.gene001109.t1 MTR_0150s0010 29.008 262 138 6 8 249 4 237 4.08e-21 92.8
MS.gene001109.t1 MTR_0150s0010 29.464 224 147 6 276 490 10 231 5.13e-17 80.9
MS.gene001109.t1 MTR_8g445860 27.530 247 150 5 14 251 13 239 5.24e-21 92.4
MS.gene001109.t1 MTR_4g019240 40.870 115 58 4 10 116 9 121 1.30e-16 78.2
MS.gene001109.t1 MTR_1g115450 37.209 86 49 1 14 99 7 87 1.38e-15 74.3
MS.gene001109.t1 MTR_7g063690 33.125 160 88 5 145 303 81 222 1.46e-15 76.6
MS.gene001109.t1 MTR_7g063690 62.500 48 18 0 15 62 13 60 9.50e-12 65.5
MS.gene001109.t1 MTR_1g115455 39.535 86 47 1 14 99 9 89 5.63e-14 72.0
MS.gene001109.t1 MTR_1g115470 37.374 99 55 2 12 108 4 97 7.57e-14 73.9
MS.gene001109.t1 MTR_8g445920 36.471 85 49 1 8 92 4 83 1.06e-11 62.0
MS.gene001109.t1 MTR_8g044890 36.471 85 49 1 8 92 4 83 1.06e-11 62.0
MS.gene001109.t1 MTR_0150s0030 34.483 87 51 2 14 99 8 89 1.97e-11 63.9
MS.gene001109.t1 MTR_7g063760 45.588 68 36 1 432 498 1 68 6.34e-11 58.9
MS.gene001109.t1 MTR_7g063870 54.545 55 25 0 8 62 25 79 8.93e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001109.t1 AT5G01120 32.661 496 305 9 11 493 6 485 7.07e-71 234
MS.gene001109.t1 AT5G01150 31.412 503 304 10 14 502 9 484 2.75e-64 217
MS.gene001109.t1 AT5G43240 30.962 520 286 13 11 493 6 489 3.61e-58 201
MS.gene001109.t1 AT5G43240 30.962 520 286 13 11 493 6 489 3.61e-58 201
MS.gene001109.t1 AT5G43240 30.962 520 286 13 11 493 6 489 3.61e-58 201
MS.gene001109.t1 AT3G09140 29.755 531 304 14 11 506 6 502 1.47e-52 186
MS.gene001109.t1 AT3G09140 29.144 549 312 15 11 506 6 530 5.71e-51 182
MS.gene001109.t1 AT5G01130 30.579 484 288 8 14 497 9 444 3.53e-50 178
MS.gene001109.t1 AT3G09110 33.436 326 201 5 14 338 9 319 9.10e-49 171
MS.gene001109.t1 AT3G09120 33.639 327 194 6 11 330 3 313 9.25e-49 171
MS.gene001109.t1 AT3G09120 26.295 251 151 8 273 501 3 241 6.63e-13 70.1
MS.gene001109.t1 AT5G01140 28.231 503 303 11 1 497 1 451 3.22e-48 173
MS.gene001109.t1 AT5G37320 28.235 510 297 17 21 503 18 485 1.33e-38 147
MS.gene001109.t1 AT5G43240 26.776 366 198 11 163 493 15 345 2.42e-18 87.0

Find 66 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTGGTCATTTCCCTTAA+TGG 0.165273 7.1:+35110811 None:intergenic
ATTCTTAACAACAACCATTA+AGG 0.189932 7.1:-35110825 MS.gene001109:CDS
CTGCAGCAGCATTTCCTTGC+AGG 0.207573 7.1:+35112193 None:intergenic
TTAAATACGAAGTCAGTTAA+AGG 0.223806 7.1:+35111682 None:intergenic
TCAGGGTCTCAGCATTCTTA+TGG 0.239207 7.1:-35110891 MS.gene001109:intron
AATATTGAAGCAGTTCAATT+TGG 0.301162 7.1:-35112278 MS.gene001109:CDS
TAAGCTTCCATAGAGCTTCT+TGG 0.318711 7.1:+35112170 None:intergenic
TGTGACGTTAAATATGTATC+TGG 0.325833 7.1:+35111388 None:intergenic
TAAATACGAAGTCAGTTAAA+GGG 0.346351 7.1:+35111683 None:intergenic
GGCAAGGTATCTGCAGAAAT+TGG 0.349648 7.1:+35111298 None:intergenic
CAAAATTACGTTGAGAGTTA+TGG 0.356213 7.1:-35112420 MS.gene001109:CDS
GCTTCTTTACCTTGCCCTTA+GGG 0.358047 7.1:-35112331 MS.gene001109:CDS
ATCATACTTACTATAATTCC+CGG 0.371009 7.1:-35111264 MS.gene001109:CDS
AGCTTCTTTACCTTGCCCTT+AGG 0.372832 7.1:-35112332 MS.gene001109:CDS
GCTGCAGCCAAGAAGCTCTA+TGG 0.379123 7.1:-35112177 MS.gene001109:CDS
TTCTTAACAACAACCATTAA+GGG 0.385405 7.1:-35110824 MS.gene001109:CDS
CTCTATTCTTAAACTCTGGT+TGG 0.385977 7.1:+35111623 None:intergenic
ATTGTTGTGGTTCTGATGAT+AGG 0.398351 7.1:-35111213 MS.gene001109:CDS
TCTTCTCTATTCTTAAACTC+TGG 0.403389 7.1:+35111619 None:intergenic
TAATGGTTGTTGTTAAGAAT+TGG 0.422993 7.1:+35110828 None:intergenic
TAGATGTGAAATAGCATTGA+AGG 0.425604 7.1:+35111066 None:intergenic
TCTGCAGAAATTGGTAAAGT+TGG 0.429039 7.1:+35111307 None:intergenic
AGCTGAAATTGTGCTGCAAT+GGG 0.458184 7.1:+35111337 None:intergenic
TTCAACAAACAAAATCTCTC+TGG 0.464201 7.1:+35111543 None:intergenic
CGTATTACATATTATTGTTG+TGG 0.466001 7.1:-35111226 MS.gene001109:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.486168 7.1:-35111466 MS.gene001109:CDS
GATTTAGAAGCAGAATACTT+AGG 0.494600 7.1:+35111166 None:intergenic
GAGTCTTGCAATAGTCCCTA+AGG 0.503426 7.1:+35112316 None:intergenic
TTTAGGAAATGGCTTTGCTA+AGG 0.504499 7.1:-35111970 MS.gene001109:CDS
GAGCTGAAATTGTGCTGCAA+TGG 0.505771 7.1:+35111336 None:intergenic
TAAGTATGATAATAATAGAC+AGG 0.516367 7.1:+35111277 None:intergenic
GCACTTCGTGTGCGAGAAGT+GGG 0.527979 7.1:-35112102 MS.gene001109:CDS
ATACATGGTTACAGATAACT+TGG 0.531240 7.1:-35111107 MS.gene001109:CDS
TACGAAGAGAGCGAATCCAC+CGG 0.532890 7.1:+35111245 None:intergenic
TTTCTAACCTTCCCCTTGGG+GGG 0.541458 7.1:-35111487 MS.gene001109:CDS
AATGAGAGTTATATATAGAG+AGG 0.545509 7.1:+35111803 None:intergenic
TAGAGAAGAAACATCTGAAG+AGG 0.545921 7.1:-35111605 MS.gene001109:CDS
AAGCTTGAAATCACAAACAT+TGG 0.547176 7.1:-35111870 MS.gene001109:CDS
AGCACTTCGTGTGCGAGAAG+TGG 0.551108 7.1:-35112103 MS.gene001109:CDS
ACGAAGAGAGCGAATCCACC+GGG 0.552296 7.1:+35111246 None:intergenic
TCGCACACGAAGTGCTGCAA+AGG 0.553820 7.1:+35112110 None:intergenic
AGGAATCAAAAGTGCAGTTG+TGG 0.559315 7.1:-35112038 MS.gene001109:CDS
GCTTCTAAATCATCTAGTTG+TGG 0.571039 7.1:-35111154 MS.gene001109:CDS
AAGAGGACCATCAGTATACA+TGG 0.573482 7.1:-35111122 MS.gene001109:CDS
TCTGTATGCTGAAGCAGTGA+AGG 0.574622 7.1:-35112375 MS.gene001109:CDS
ATCAGAAATGATTAATGTGG+CGG 0.575110 7.1:+35111944 None:intergenic
TGTTCCTCTATGTGATGTAG+AGG 0.578655 7.1:-35111032 MS.gene001109:CDS
ATAGCATTGAAGGATGAGGC+TGG 0.584865 7.1:+35111076 None:intergenic
TGCAATAGTCCCTAAGGGCA+AGG 0.589160 7.1:+35112322 None:intergenic
AAGAAACATCTGAAGAGGGT+AGG 0.591438 7.1:-35111600 MS.gene001109:CDS
AGAGAAGAAACATCTGAAGA+GGG 0.601746 7.1:-35111604 MS.gene001109:CDS
TCTGTAACCATGTATACTGA+TGG 0.602750 7.1:+35111115 None:intergenic
AATTACGTTGAGAGTTATGG+TGG 0.607698 7.1:-35112417 MS.gene001109:CDS
AAATACGAAGTCAGTTAAAG+GGG 0.611325 7.1:+35111684 None:intergenic
TGTCGAAATCAACAAGCAAG+AGG 0.616111 7.1:-35111829 MS.gene001109:CDS
TGAAATAGCATTGAAGGATG+AGG 0.620423 7.1:+35111072 None:intergenic
GGTTAGAATTGGTGTGAACG+AGG 0.622070 7.1:-35111002 MS.gene001109:intron
ATCATCAGAAATGATTAATG+TGG 0.625754 7.1:+35111941 None:intergenic
TGAAATTGTGCTGCAATGGG+AGG 0.631873 7.1:+35111340 None:intergenic
AGTTGTGGAGAATTTGCAAG+AGG 0.643362 7.1:-35111139 MS.gene001109:CDS
TTTATGCACAAATACCTGCA+AGG 0.646419 7.1:-35112207 MS.gene001109:CDS
AGTCTTGCAATAGTCCCTAA+GGG 0.648111 7.1:+35112317 None:intergenic
ATGATAATAATAGACAGGCA+AGG 0.657140 7.1:+35111282 None:intergenic
ATACTTACTATAATTCCCGG+TGG 0.677154 7.1:-35111261 MS.gene001109:CDS
ATTTGTAAAAGCAGACGTTG+AGG 0.677697 7.1:+35110859 None:intergenic
GATTGTGTTAGAAAGCAAAG+TGG 0.712588 7.1:-35112080 MS.gene001109:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGTATGATAATAATAGAC+AGG + chr7.1:35111995-35112014 None:intergenic 20.0%
! AATATTGAAGCAGTTCAATT+TGG - chr7.1:35110991-35111010 MS.gene001109:intron 25.0%
! AATGAGAGTTATATATAGAG+AGG + chr7.1:35111469-35111488 None:intergenic 25.0%
! ATAACTGTTCCAAAAACATT+AGG + chr7.1:35111366-35111385 None:intergenic 25.0%
! ATCATACTTACTATAATTCC+CGG - chr7.1:35112005-35112024 MS.gene001109:CDS 25.0%
! ATCATCAGAAATGATTAATG+TGG + chr7.1:35111331-35111350 None:intergenic 25.0%
! ATTCTTAACAACAACCATTA+AGG - chr7.1:35112444-35112463 MS.gene001109:CDS 25.0%
! CGTATTACATATTATTGTTG+TGG - chr7.1:35112043-35112062 MS.gene001109:CDS 25.0%
! TAAATACGAAGTCAGTTAAA+GGG + chr7.1:35111589-35111608 None:intergenic 25.0%
! TTAAATACGAAGTCAGTTAA+AGG + chr7.1:35111590-35111609 None:intergenic 25.0%
! TTCTTAACAACAACCATTAA+GGG - chr7.1:35112445-35112464 MS.gene001109:CDS 25.0%
! TTGTTTGTTTACATGTTTCA+GGG - chr7.1:35112361-35112380 MS.gene001109:CDS 25.0%
! TTTGTTTGTTTACATGTTTC+AGG - chr7.1:35112360-35112379 MS.gene001109:CDS 25.0%
!! AAACTCAAAAATTCTTTTGG+TGG + chr7.1:35111282-35111301 None:intergenic 25.0%
!! AACTCAAAAATTCTTTTGGT+GGG + chr7.1:35111281-35111300 None:intergenic 25.0%
!! CCTAAACTCAAAAATTCTTT+TGG + chr7.1:35111285-35111304 None:intergenic 25.0%
!! TAATGGTTGTTGTTAAGAAT+TGG + chr7.1:35112444-35112463 None:intergenic 25.0%
!!! CCAAAAGAATTTTTGAGTTT+AGG - chr7.1:35111282-35111301 MS.gene001109:CDS 25.0%
!!! GAATTTTTGAGTTTAGGAAA+TGG - chr7.1:35111288-35111307 MS.gene001109:CDS 25.0%
AAATACGAAGTCAGTTAAAG+GGG + chr7.1:35111588-35111607 None:intergenic 30.0%
AAGCTTGAAATCACAAACAT+TGG - chr7.1:35111399-35111418 MS.gene001109:CDS 30.0%
ATACATGGTTACAGATAACT+TGG - chr7.1:35112162-35112181 MS.gene001109:CDS 30.0%
ATCAGAAATGATTAATGTGG+CGG + chr7.1:35111328-35111347 None:intergenic 30.0%
ATGATAATAATAGACAGGCA+AGG + chr7.1:35111990-35112009 None:intergenic 30.0%
ATTCCTAAAAATGCTCAAAC+GGG + chr7.1:35111217-35111236 None:intergenic 30.0%
CAAAATTACGTTGAGAGTTA+TGG - chr7.1:35110849-35110868 MS.gene001109:CDS 30.0%
GATTCCTAAAAATGCTCAAA+CGG + chr7.1:35111218-35111237 None:intergenic 30.0%
GATTTAGAAGCAGAATACTT+AGG + chr7.1:35112106-35112125 None:intergenic 30.0%
TCTTCTCTATTCTTAAACTC+TGG + chr7.1:35111653-35111672 None:intergenic 30.0%
TGTGACGTTAAATATGTATC+TGG + chr7.1:35111884-35111903 None:intergenic 30.0%
TTCAACAAACAAAATCTCTC+TGG + chr7.1:35111729-35111748 None:intergenic 30.0%
! ACTCAAAAATTCTTTTGGTG+GGG + chr7.1:35111280-35111299 None:intergenic 30.0%
! TAGATGTGAAATAGCATTGA+AGG + chr7.1:35112206-35112225 None:intergenic 30.0%
!! AGAGAGATTTTGTTTGTTGA+AGG - chr7.1:35111728-35111747 MS.gene001109:intron 30.0%
!! AGATTTTGTTTGTTGAAGGA+GGG - chr7.1:35111732-35111751 MS.gene001109:intron 30.0%
!!! ATTTCAAGCTTTTGAAGTAG+TGG + chr7.1:35111390-35111409 None:intergenic 30.0%
AATTACGTTGAGAGTTATGG+TGG - chr7.1:35110852-35110871 MS.gene001109:CDS 35.0%
AGAGAAGAAACATCTGAAGA+GGG - chr7.1:35111665-35111684 MS.gene001109:CDS 35.0%
ATACTTACTATAATTCCCGG+TGG - chr7.1:35112008-35112027 MS.gene001109:CDS 35.0%
ATGTGATGTAGAGGAAAAAG+TGG - chr7.1:35112246-35112265 MS.gene001109:CDS 35.0%
ATTTGTAAAAGCAGACGTTG+AGG + chr7.1:35112413-35112432 None:intergenic 35.0%
CTCTATTCTTAAACTCTGGT+TGG + chr7.1:35111649-35111668 None:intergenic 35.0%
GAGGAAAAAGTGGTTAGAAT+TGG - chr7.1:35112256-35112275 MS.gene001109:CDS 35.0%
GATTGTGTTAGAAAGCAAAG+TGG - chr7.1:35111189-35111208 MS.gene001109:CDS 35.0%
GCTTCTAAATCATCTAGTTG+TGG - chr7.1:35112115-35112134 MS.gene001109:CDS 35.0%
TAGAGAAGAAACATCTGAAG+AGG - chr7.1:35111664-35111683 MS.gene001109:CDS 35.0%
TCATTGGTCATTTCCCTTAA+TGG + chr7.1:35112461-35112480 None:intergenic 35.0%
TCTGCAGAAATTGGTAAAGT+TGG + chr7.1:35111965-35111984 None:intergenic 35.0%
TCTGTAACCATGTATACTGA+TGG + chr7.1:35112157-35112176 None:intergenic 35.0%
TTTATGCACAAATACCTGCA+AGG - chr7.1:35111062-35111081 MS.gene001109:CDS 35.0%
! ACTGTGATGCCTAATGTTTT+TGG - chr7.1:35111354-35111373 MS.gene001109:CDS 35.0%
! TGAAATAGCATTGAAGGATG+AGG + chr7.1:35112200-35112219 None:intergenic 35.0%
! TTTAGGAAATGGCTTTGCTA+AGG - chr7.1:35111299-35111318 MS.gene001109:CDS 35.0%
! TTTTCCTCTACATCACATAG+AGG + chr7.1:35112244-35112263 None:intergenic 35.0%
!! ATTGTTGTGGTTCTGATGAT+AGG - chr7.1:35112056-35112075 MS.gene001109:CDS 35.0%
!! CAAAGCACTGTAATGATGTA+TGG + chr7.1:35112344-35112363 None:intergenic 35.0%
!! GAGATTTTGTTTGTTGAAGG+AGG - chr7.1:35111731-35111750 MS.gene001109:intron 35.0%
!! GATTTTGTTTGTTGAAGGAG+GGG - chr7.1:35111733-35111752 MS.gene001109:intron 35.0%
!! TCAACGTCTGCTTTTACAAA+TGG - chr7.1:35112412-35112431 MS.gene001109:CDS 35.0%
AAGAAACATCTGAAGAGGGT+AGG - chr7.1:35111669-35111688 MS.gene001109:CDS 40.0%
AAGAGGACCATCAGTATACA+TGG - chr7.1:35112147-35112166 MS.gene001109:CDS 40.0%
AGCTGAAATTGTGCTGCAAT+GGG + chr7.1:35111935-35111954 None:intergenic 40.0%
AGTCTTGCAATAGTCCCTAA+GGG + chr7.1:35110955-35110974 None:intergenic 40.0%
AGTTGTGGAGAATTTGCAAG+AGG - chr7.1:35112130-35112149 MS.gene001109:CDS 40.0%
TAAGCTTCCATAGAGCTTCT+TGG + chr7.1:35111102-35111121 None:intergenic 40.0%
TGTCGAAATCAACAAGCAAG+AGG - chr7.1:35111440-35111459 MS.gene001109:CDS 40.0%
TGTTCCTCTATGTGATGTAG+AGG - chr7.1:35112237-35112256 MS.gene001109:CDS 40.0%
! AGGAATCAAAAGTGCAGTTG+TGG - chr7.1:35111231-35111250 MS.gene001109:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+GGG - chr7.1:35111779-35111798 MS.gene001109:intron 40.0%
! TAGTTTTCTAACCTTCCCCT+TGG - chr7.1:35111778-35111797 MS.gene001109:intron 40.0%
AGCTTCTTTACCTTGCCCTT+AGG - chr7.1:35110937-35110956 MS.gene001109:intron 45.0%
GAGCTGAAATTGTGCTGCAA+TGG + chr7.1:35111936-35111955 None:intergenic 45.0%
GAGTCTTGCAATAGTCCCTA+AGG + chr7.1:35110956-35110975 None:intergenic 45.0%
GCTTCTTTACCTTGCCCTTA+GGG - chr7.1:35110938-35110957 MS.gene001109:intron 45.0%
GGTTAGAATTGGTGTGAACG+AGG - chr7.1:35112267-35112286 MS.gene001109:CDS 45.0%
TCAGGGTCTCAGCATTCTTA+TGG - chr7.1:35112378-35112397 MS.gene001109:CDS 45.0%
TCTGTATGCTGAAGCAGTGA+AGG - chr7.1:35110894-35110913 MS.gene001109:intron 45.0%
TGAAATTGTGCTGCAATGGG+AGG + chr7.1:35111932-35111951 None:intergenic 45.0%
! ATAGCATTGAAGGATGAGGC+TGG + chr7.1:35112196-35112215 None:intergenic 45.0%
! CTTTTGGTGGGGACATTACT+AGG + chr7.1:35111269-35111288 None:intergenic 45.0%
! GAGCCCGTTTGAGCATTTTT+AGG - chr7.1:35111211-35111230 MS.gene001109:CDS 45.0%
! GGCAAGGTATCTGCAGAAAT+TGG + chr7.1:35111974-35111993 None:intergenic 45.0%
! GTTTTCTAACCTTCCCCTTG+GGG - chr7.1:35111780-35111799 MS.gene001109:intron 45.0%
! TTTTCTAACCTTCCCCTTGG+GGG - chr7.1:35111781-35111800 MS.gene001109:intron 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG - chr7.1:35111803-35111822 MS.gene001109:CDS 45.0%
ATATGCAACACTCCCCCCAA+GGG + chr7.1:35111797-35111816 None:intergenic 50.0%
TACGAAGAGAGCGAATCCAC+CGG + chr7.1:35112027-35112046 None:intergenic 50.0%
TGCAATAGTCCCTAAGGGCA+AGG + chr7.1:35110950-35110969 None:intergenic 50.0%
TTTCTAACCTTCCCCTTGGG+GGG - chr7.1:35111782-35111801 MS.gene001109:intron 50.0%
ACGAAGAGAGCGAATCCACC+GGG + chr7.1:35112026-35112045 None:intergenic 55.0%
AGCACTTCGTGTGCGAGAAG+TGG - chr7.1:35111166-35111185 MS.gene001109:CDS 55.0%
CATATGCAACACTCCCCCCA+AGG + chr7.1:35111798-35111817 None:intergenic 55.0%
CTGCAGCAGCATTTCCTTGC+AGG + chr7.1:35111079-35111098 None:intergenic 55.0%
GCACTTCGTGTGCGAGAAGT+GGG - chr7.1:35111167-35111186 MS.gene001109:CDS 55.0%
GCTGCAGCCAAGAAGCTCTA+TGG - chr7.1:35111092-35111111 MS.gene001109:CDS 55.0%
TATGCAACACTCCCCCCAAG+GGG + chr7.1:35111796-35111815 None:intergenic 55.0%
!! TCGCACACGAAGTGCTGCAA+AGG + chr7.1:35111162-35111181 None:intergenic 55.0%
CAACACTCCCCCCAAGGGGA+AGG + chr7.1:35111792-35111811 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35110811 35112480 35110811 ID=MS.gene001109
chr7.1 mRNA 35110811 35112480 35110811 ID=MS.gene001109.t1;Parent=MS.gene001109
chr7.1 exon 35111800 35112480 35111800 ID=MS.gene001109.t1.exon1;Parent=MS.gene001109.t1
chr7.1 CDS 35111800 35112480 35111800 ID=cds.MS.gene001109.t1;Parent=MS.gene001109.t1
chr7.1 exon 35111003 35111743 35111003 ID=MS.gene001109.t1.exon2;Parent=MS.gene001109.t1
chr7.1 CDS 35111003 35111743 35111003 ID=cds.MS.gene001109.t1;Parent=MS.gene001109.t1
chr7.1 exon 35110811 35110909 35110811 ID=MS.gene001109.t1.exon3;Parent=MS.gene001109.t1
chr7.1 CDS 35110811 35110909 35110811 ID=cds.MS.gene001109.t1;Parent=MS.gene001109.t1
Gene Sequence

>MS.gene001109

ATGGCTGACGTTGCAACTGAATCTGTTGAACAAAATGACAAAATTACGTTGAGAGTTATGGTGGATAAAGAAAGTAACAAAGTTCTGTATGCTGAAGCAGTGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTTACCTTGCCCTTAGGGACTATTGCAAGACTCGTTGCTACAGACTCAAATATTGAAGCAGTTCAATTTGGCAGCATTAGCTCACTTTATCAAAGTGTAAAAGATCTTGATCAACAATATTTATGCACAAATACCTGCAAGGAAATGCTGCTGCAGCCAAGAAGCTCTATGGAAGCTTATTGTCAAAAGCTCAAACTGAATATAGACGACACAGAACCTTTGCAGCACTTCGTGTGCGAGAAGTGGGATTGTGTTAGAAAGCAAAGTGGAGCCCGTTTGAGCATTTTTAGGAATCAAAAGTGCAGTTGTGGAAAAGTAATGAACCTAGTAATGTCCCCACCAAAAGAATTTTTGAGTTTAGGAAATGGCTTTGCTAAGGAAACCGCCACATTAATCATTTCTGATGATCTTACTGTGATGCCTAATGTTTTTGGAACAGTTATACCACTACTTCAAAAGCTTGAAATCACAAACATTGGTGCTATTGTTGAAGAATCTGTCGAAATCAACAAGCAAGAGGCATCCTCTCTATATATAACTCTCATTTTTGTATATCATTATTTTGTTTAGTTGATTTTTTTCTCATCAAATATTCATTTTTGTAGATAACTGATATTCTCAAGTTGTCATTCGTCTCAAAGACCCCTTTAACTGACTTCGTATTTAAGAAGAAACATTTCTGTGATGAATTTGTCAAGACAAACCAACCAGAGTTTAAGAATAGAGAAGAAACATCTGAAGAGGGTAGGCAGATGTCTGTGAAAGTTTTGCAAAGAAAATCAACCAGAGAGATTTTGTTTGTTGAAGGAGGGGTAGATTTTATTGACTTTATTTTTAGTTTTCTAACCTTCCCCTTGGGGGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAATTTATATAAAAGCGTAACTGAGTTGAGTCCAGATACATATTTAACGTCACAAGAACTTAAAGATAAACTAACTAAGCCTCCCATTGCAGCACAATTTCAGCTCAGCAATCCAACTTTACCAATTTCTGCAGATACCTTGCCTGTCTATTATTATCATACTTACTATAATTCCCGGTGGATTCGCTCTCTTCGTATTACATATTATTGTTGTGGTTCTGATGATAGGTGTGTACTTTTGAATTTTGTTGATCCTAAGTATTCTGCTTCTAAATCATCTAGTTGTGGAGAATTTGCAAGAGGACCATCAGTATACATGGTTACAGATAACTTGGCTGTGACTCCAGCCTCATCCTTCAATGCTATTTCACATCTAAAGAGTTTAAATGTTCCTCTATGTGATGTAGAGGAAAAAGTGGTTAGAATTGGTGTGAACGAGGTAAATCACGACTTAAGACTTTTCACGTTGTTATCGCAATTAATTTTCATTTCCATACATCATTACAGTGCTTTGTTTGTTTACATGTTTCAGGGTCTCAGCATTCTTATGGCTTCATTGACCTCAACGTCTGCTTTTACAAATGGTCTCAACCAATTCTTAACAACAACCATTAAGGGAAATGACCAATGA
Protein sequence

>MS.gene001109.t1

MADVATESVEQNDKITLRVMVDKESNKVLYAEAVKDFVDVLFSFFTLPLGTIARLVATDSNIEAVQFGSISSLYQSVKDLDQQYLCTNTCKEMLLQPRSSMEAYCQKLKLNIDDTEPLQHFVCEKWDCVRKQSGARLSIFRNQKCSCGKVMNLVMSPPKEFLSLGNGFAKETATLIISDDLTVMPNVFGTVIPLLQKLEITNIGAIVEESVEINKQEASSLYITLIFITDILKLSFVSKTPLTDFVFKKKHFCDEFVKTNQPEFKNREETSEEGRQMSVKVLQRKSTREILFVEGGVDFIDFIFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSVTELSPDTYLTSQELKDKLTKPPIAAQFQLSNPTLPISADTLPVYYYHTYYNSRWIRSLRITYYCCGSDDRCVLLNFVDPKYSASKSSSCGEFARGPSVYMVTDNLAVTPASSFNAISHLKSLNVPLCDVEEKVVRIGVNEGLSILMASLTSTSAFTNGLNQFLTTTIKGNDQ