AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46166

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46166.t1 MTR_7g062300 70.825 473 123 7 1 459 1 472 0.0 635
MS.gene46166.t1 MTR_7g062280 66.935 496 125 5 5 467 3 492 0.0 632
MS.gene46166.t1 MTR_7g063920 70.975 472 97 6 1 467 1 437 0.0 626
MS.gene46166.t1 MTR_7g063840 55.180 473 196 5 8 467 5 474 1.83e-168 483
MS.gene46166.t1 MTR_7g063880 56.936 483 176 11 1 466 1 468 8.03e-162 466
MS.gene46166.t1 MTR_7g063900 55.242 496 186 11 1 467 1 489 4.51e-160 462
MS.gene46166.t1 MTR_7g063660 52.731 476 202 6 11 467 7 478 4.47e-154 446
MS.gene46166.t1 MTR_7g063820 51.215 494 198 10 6 467 3 485 1.43e-145 425
MS.gene46166.t1 MTR_7g063830 52.220 473 190 11 1 466 1 444 1.34e-143 418
MS.gene46166.t1 MTR_3g007740 53.911 473 165 11 8 461 5 443 4.25e-141 412
MS.gene46166.t1 MTR_7g063670 51.572 477 182 10 10 467 12 458 9.22e-138 404
MS.gene46166.t1 MTR_7g063890 51.745 487 197 9 11 466 25 504 9.98e-131 388
MS.gene46166.t1 MTR_3g065200 43.573 459 182 13 13 447 3 408 5.26e-105 320
MS.gene46166.t1 MTR_7g066570 40.530 491 255 8 3 464 2 484 6.13e-105 323
MS.gene46166.t1 MTR_7g066260 42.171 479 241 10 1 460 1 462 7.34e-100 308
MS.gene46166.t1 MTR_7g066430 39.917 481 255 7 14 460 5 485 5.59e-95 296
MS.gene46166.t1 MTR_7g066430 27.074 229 134 7 252 454 4 225 6.36e-11 64.7
MS.gene46166.t1 MTR_7g066410 36.257 513 264 10 9 462 6 514 4.80e-94 294
MS.gene46166.t1 MTR_7g066480 40.558 466 213 9 12 466 15 427 6.29e-94 291
MS.gene46166.t1 MTR_7g012680 39.375 480 247 9 3 467 2 452 3.19e-92 287
MS.gene46166.t1 MTR_7g066340 38.784 477 248 11 3 460 2 453 1.70e-89 281
MS.gene46166.t1 MTR_7g058710 35.756 509 260 11 1 467 1 484 9.01e-89 279
MS.gene46166.t1 MTR_7g066360 41.423 478 222 14 3 456 2 445 9.13e-89 279
MS.gene46166.t1 MTR_7g066290 39.832 477 226 9 1 460 1 433 1.76e-87 274
MS.gene46166.t1 MTR_7g066490 39.035 456 206 9 13 460 16 407 7.50e-87 272
MS.gene46166.t1 MTR_7g066490 29.565 230 129 7 239 454 6 216 3.61e-11 65.5
MS.gene46166.t1 MTR_7g066350 37.895 475 249 10 9 462 2 451 7.03e-84 266
MS.gene46166.t1 MTR_7g066580 35.551 481 229 11 25 463 7 448 1.14e-80 257
MS.gene46166.t1 MTR_7g066580 26.016 246 137 8 10 227 212 440 3.22e-12 68.6
MS.gene46166.t1 MTR_7g066400 35.294 476 254 9 3 462 2 439 8.80e-78 249
MS.gene46166.t1 MTR_7g063720 53.165 237 105 4 232 467 2 233 9.13e-78 243
MS.gene46166.t1 MTR_7g063720 28.750 240 151 9 8 245 18 239 2.55e-16 78.6
MS.gene46166.t1 MTR_4g019310 36.072 499 272 15 10 467 5 497 2.53e-75 245
MS.gene46166.t1 MTR_7g062270 63.388 183 63 1 6 184 3 185 2.23e-73 236
MS.gene46166.t1 MTR_7g062270 29.586 169 102 6 253 406 11 177 2.74e-11 65.5
MS.gene46166.t1 MTR_1g041315 34.526 475 253 12 3 444 2 451 5.93e-72 236
MS.gene46166.t1 MTR_7g058700 35.118 467 210 8 25 467 531 928 1.02e-69 238
MS.gene46166.t1 MTR_7g066310 33.843 458 210 8 14 460 8 383 1.39e-67 222
MS.gene46166.t1 MTR_7g066310 30.357 224 117 10 8 226 188 377 1.17e-13 72.8
MS.gene46166.t1 MTR_7g063850 44.051 311 128 8 179 466 1 288 5.84e-62 204
MS.gene46166.t1 MTR_2g029400 31.712 473 232 10 1 450 1 405 1.09e-58 199
MS.gene46166.t1 MTR_4g017610 32.179 491 282 15 1 456 1 475 8.00e-57 195
MS.gene46166.t1 MTR_4g017830 30.680 515 297 14 3 466 2 507 5.25e-55 192
MS.gene46166.t1 MTR_4g017410 31.610 503 288 15 6 466 2 490 1.30e-53 187
MS.gene46166.t1 MTR_7g063690 42.754 276 94 5 8 279 7 222 1.84e-53 180
MS.gene46166.t1 MTR_4g019340 30.928 485 269 14 11 448 36 501 4.67e-53 186
MS.gene46166.t1 MTR_4g019340 29.870 231 131 9 2 221 292 502 8.91e-14 73.9
MS.gene46166.t1 MTR_4g017440 29.746 511 298 14 7 466 8 508 2.55e-50 179
MS.gene46166.t1 MTR_4g017470 29.492 512 276 15 3 466 2 476 2.29e-49 176
MS.gene46166.t1 MTR_7g066280 31.540 409 221 10 92 460 1 390 8.73e-45 162
MS.gene46166.t1 MTR_7g066280 28.514 249 139 11 8 226 145 384 1.04e-12 70.1
MS.gene46166.t1 MTR_1g014060 44.776 201 101 5 26 219 13 210 5.08e-43 156
MS.gene46166.t1 MTR_1g014060 37.766 188 109 2 282 467 210 391 5.87e-31 123
MS.gene46166.t1 MTR_1g014060 26.887 212 137 6 265 460 13 222 5.39e-14 73.9
MS.gene46166.t1 MTR_7g100420 33.230 322 188 4 150 456 84 393 3.05e-36 138
MS.gene46166.t1 MTR_7g100420 71.739 46 13 0 11 56 37 82 5.40e-12 67.8
MS.gene46166.t1 MTR_7g066680 32.903 310 134 6 209 456 37 334 4.65e-35 134
MS.gene46166.t1 MTR_7g066680 31.217 189 108 8 7 182 80 259 3.43e-13 70.9
MS.gene46166.t1 MTR_8g023240 27.137 468 292 16 14 454 38 483 2.31e-34 135
MS.gene46166.t1 MTR_4g017550 28.025 471 260 18 43 456 21 469 3.36e-33 131
MS.gene46166.t1 MTR_4g017550 28.295 258 137 10 9 243 243 475 7.90e-13 70.9
MS.gene46166.t1 MTR_7g063760 64.865 74 25 1 395 467 1 74 4.70e-26 101
MS.gene46166.t1 MTR_8g445860 31.349 252 139 9 1 232 1 238 2.35e-22 95.9
MS.gene46166.t1 MTR_1g115440 32.927 246 136 9 5 231 3 238 2.40e-22 95.9
MS.gene46166.t1 MTR_1g115440 29.464 224 136 6 252 454 11 233 1.85e-17 82.0
MS.gene46166.t1 MTR_0150s0010 31.855 248 141 8 1 231 1 237 2.51e-20 90.1
MS.gene46166.t1 MTR_0150s0010 27.234 235 125 7 252 453 10 231 3.80e-15 75.1
MS.gene46166.t1 MTR_7g066390 54.795 73 33 0 388 460 50 122 1.07e-17 80.5
MS.gene46166.t1 MTR_2g067310 36.842 171 70 6 24 192 56 190 2.02e-16 79.0
MS.gene46166.t1 MTR_1g115455 29.528 254 136 9 1 232 1 233 1.71e-14 73.2
MS.gene46166.t1 MTR_7g063870 49.398 83 41 1 135 216 75 157 3.27e-14 72.8
MS.gene46166.t1 MTR_7g063870 56.140 57 24 1 6 62 25 80 5.43e-12 66.2
MS.gene46166.t1 MTR_4g019240 33.884 121 70 3 1 113 1 119 5.55e-11 62.0
MS.gene46166.t1 MTR_7g063750 50.000 80 36 2 387 465 16 92 8.11e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46166.t1 AT3G09140 33.398 515 276 14 1 465 1 498 1.79e-67 224
MS.gene46166.t1 AT5G01130 32.983 476 273 9 9 467 5 451 4.60e-67 222
MS.gene46166.t1 AT5G01120 34.406 497 267 15 6 456 2 485 6.39e-66 220
MS.gene46166.t1 AT5G01150 31.653 496 288 10 9 467 5 486 4.56e-63 213
MS.gene46166.t1 AT3G09140 31.676 543 276 15 1 465 1 526 3.71e-62 211
MS.gene46166.t1 AT5G01140 30.081 492 273 13 9 467 5 458 3.35e-56 194
MS.gene46166.t1 AT3G09110 36.095 338 199 8 10 337 6 336 1.28e-55 189
MS.gene46166.t1 AT5G43240 32.661 496 265 14 14 456 10 489 1.24e-53 188
MS.gene46166.t1 AT5G43240 32.661 496 265 14 14 456 10 489 1.24e-53 188
MS.gene46166.t1 AT5G43240 32.661 496 265 14 14 456 10 489 1.24e-53 188
MS.gene46166.t1 AT3G09120 38.050 318 165 8 9 303 2 310 2.95e-50 174
MS.gene46166.t1 AT3G09120 27.434 226 139 6 252 454 6 229 3.14e-12 67.8
MS.gene46166.t1 AT5G37320 30.645 496 266 19 18 462 13 481 1.08e-41 155
MS.gene46166.t1 AT5G43240 28.788 330 183 9 164 456 31 345 5.16e-19 89.0

Find 87 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGTCGAGGATTTGTTAA+TGG 0.255342 7.2:+40331667 MS.gene46166:CDS
TTTGGGCTACTCCAGGAATT+TGG 0.263251 7.2:+40331754 MS.gene46166:CDS
GAGCTTTCTTACTATTCCTT+TGG 0.272514 7.2:+40332248 MS.gene46166:CDS
AAGTTAATGAATTTATTAAA+AGG 0.274967 7.2:+40332534 MS.gene46166:CDS
AGTAAACCTATAGCTGAAAT+TGG 0.306215 7.2:-40332633 None:intergenic
TCATGTAATGTTGAAATTAG+TGG 0.309011 7.2:+40332132 MS.gene46166:CDS
GCAATTATCTTCACCAGCTT+TGG 0.309152 7.2:-40332508 None:intergenic
TTGTCTCCAATTTCAGCTAT+AGG 0.316501 7.2:+40332627 MS.gene46166:CDS
AACATTTCCTTCACCAAACT+TGG 0.329978 7.2:-40331787 None:intergenic
TGTATTGACAATGCAAGCTT+TGG 0.346373 7.2:+40331736 MS.gene46166:CDS
CAGTAATATTCCAGAACTTC+GGG 0.353291 7.2:-40332453 None:intergenic
TTCGTTCAAAAGAAGTTTCA+AGG 0.368322 7.2:-40331248 None:intergenic
GTACGTTGCTACTGATGATT+TGG 0.369070 7.2:+40332593 MS.gene46166:CDS
AATTCTTGAGCCCGAAGTTC+TGG 0.374787 7.2:+40332443 MS.gene46166:CDS
AGCTTTCTTACTATTCCTTT+GGG 0.375218 7.2:+40332249 MS.gene46166:CDS
AACACCTCTTGATGATTTGA+AGG 0.389867 7.2:+40332668 MS.gene46166:CDS
GGTTGTCACCATTGGAGTTA+AGG 0.390924 7.2:+40332695 MS.gene46166:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.2:+40331345 MS.gene46166:CDS
AATCCTCGACGGAATTGTTT+AGG 0.391576 7.2:-40331658 None:intergenic
AGTTAATGAATTTATTAAAA+GGG 0.394655 7.2:+40332535 MS.gene46166:CDS
TTGGGAAGAAACCATCTGTT+GGG 0.404610 7.2:+40332094 MS.gene46166:CDS
AGAACTTCGGGCTCAAGAAT+TGG 0.405673 7.2:-40332441 None:intergenic
TTGTTTAGGCAAAACTTGAT+AGG 0.406296 7.2:-40331644 None:intergenic
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.2:+40331328 MS.gene46166:CDS
AACCATCTGTTGGGGTTGGC+AGG 0.416063 7.2:+40332103 MS.gene46166:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.2:-40331490 None:intergenic
TCTCAATGTCACTAAAGAAA+AGG 0.439665 7.2:+40331810 MS.gene46166:CDS
TCTTGATGATTTGAAGGAAA+AGG 0.443248 7.2:+40332674 MS.gene46166:CDS
TGTTTACATTATTCCAAAGC+TGG 0.444261 7.2:+40332495 MS.gene46166:CDS
GTATTGACAATGCAAGCTTT+GGG 0.446570 7.2:+40331737 MS.gene46166:CDS
AAGGAAAAGGTTGTCACCAT+TGG 0.447263 7.2:+40332687 MS.gene46166:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.447416 7.2:+40331280 MS.gene46166:CDS
CTTGCATTGTCAATACAACT+TGG 0.467131 7.2:-40331730 None:intergenic
TATCGAAAGCAGCTAAGAAT+AGG 0.469444 7.2:+40332367 MS.gene46166:CDS
ACAGTAATATTCCAGAACTT+CGG 0.475908 7.2:-40332454 None:intergenic
CTTGTTTGCAGAAGCAGGTA+AGG 0.477534 7.2:+40331285 MS.gene46166:CDS
GGCAAGATCCTTTGTGCTCA+AGG 0.479300 7.2:+40332198 MS.gene46166:CDS
GGTGGGCAAGACCATTTGTA+AGG 0.479347 7.2:-40332877 None:intergenic
GTTAATGAATTTATTAAAAG+GGG 0.492023 7.2:+40332536 MS.gene46166:CDS
TTAAAAGGGGTCACTCATGA+AGG 0.505894 7.2:+40332549 MS.gene46166:CDS
TGCAAGCTTTGGGCTACTCC+AGG 0.507384 7.2:+40331747 MS.gene46166:CDS
TCAACATCCGCCCTTACAAA+TGG 0.510365 7.2:+40332866 MS.gene46166:CDS
GCTTGCTTAATGTTAAATGC+GGG 0.515939 7.2:-40332410 None:intergenic
TCTTACCTCCTTAACTCCAA+TGG 0.516510 7.2:-40332703 None:intergenic
TTTGGAGAGAATTGTTCGTT+GGG 0.527129 7.2:+40332288 MS.gene46166:CDS
TCAGTAGCAACGTACATAGC+TGG 0.536512 7.2:-40332585 None:intergenic
TTTGGGAAGAAACCATCTGT+TGG 0.536861 7.2:+40332093 MS.gene46166:CDS
AAAACATGTTAAGTACTTGG+TGG 0.539024 7.2:-40331551 None:intergenic
AATATCTGTCAAAGTAGACT+TGG 0.540976 7.2:-40332067 None:intergenic
CACTCATGAAGGTTATGTCA+AGG 0.543474 7.2:+40332560 MS.gene46166:CDS
TGCTTGCTTAATGTTAAATG+CGG 0.544421 7.2:-40332411 None:intergenic
AGAAGCAGGTAAGGACTTTG+TGG 0.551445 7.2:+40331294 MS.gene46166:CDS
GCAAGATCCTTTGTGCTCAA+GGG 0.553478 7.2:+40332199 MS.gene46166:CDS
AAACATGTTAAGTACTTGGT+GGG 0.558741 7.2:-40331550 None:intergenic
AAGAAACCATCTGTTGGGGT+TGG 0.563173 7.2:+40332099 MS.gene46166:CDS
CAAGATCCTTTGTGCTCAAG+GGG 0.564756 7.2:+40332200 MS.gene46166:CDS
GTAGAGAAGGAATCTGACAT+AGG 0.571490 7.2:+40331367 MS.gene46166:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.2:+40331354 MS.gene46166:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.2:-40331343 None:intergenic
ACATTTCCTTCACCAAACTT+GGG 0.583492 7.2:-40331786 None:intergenic
TAGAGAAGGAATCTGACATA+GGG 0.587709 7.2:+40331368 MS.gene46166:CDS
GGCAAGACCATTTGTAAGGG+CGG 0.597424 7.2:-40332873 None:intergenic
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.2:-40331353 None:intergenic
AACCTGCCAACCCCAACAGA+TGG 0.601175 7.2:-40332105 None:intergenic
GACATAGGGCAAGTTACAGT+CGG 0.601467 7.2:+40331382 MS.gene46166:CDS
TATAGCTGAAATTGGAGACA+AGG 0.601584 7.2:-40332625 None:intergenic
GTTAAATGCGGGGAAATGCA+AGG 0.603048 7.2:-40332399 None:intergenic
TGGGAAGAAACCATCTGTTG+GGG 0.604158 7.2:+40332095 MS.gene46166:CDS
GATACATCTAAGTGTCGCTG+TGG 0.606516 7.2:+40331610 MS.gene46166:CDS
CTTGTTCCCCTTGAGCACAA+AGG 0.606845 7.2:-40332206 None:intergenic
TGATGGTTGTTTCTCTACTG+AGG 0.607499 7.2:+40331444 MS.gene46166:CDS
TTTAACTTCAGTTAACAGGT+GGG 0.617655 7.2:-40332894 None:intergenic
ATACGAGTAATTCGTCCCAA+AGG 0.621753 7.2:-40332264 None:intergenic
CTTGCTTAATGTTAAATGCG+GGG 0.623908 7.2:-40332409 None:intergenic
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.2:+40331411 MS.gene46166:CDS
ACTCATGAAGGTTATGTCAA+GGG 0.625259 7.2:+40332561 MS.gene46166:CDS
CACCATTAACAAATCCTCGA+CGG 0.626619 7.2:-40331669 None:intergenic
TGTCACCATTGGAGTTAAGG+AGG 0.627855 7.2:+40332698 MS.gene46166:CDS
CTAGTTATAAGAAAATCTGA+TGG 0.635745 7.2:+40332177 MS.gene46166:CDS
GTGGGCAAGACCATTTGTAA+GGG 0.640749 7.2:-40332876 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.2:+40331213 MS.gene46166:CDS
ATACATCTAAGTGTCGCTGT+GGG 0.646105 7.2:+40331611 MS.gene46166:CDS
AGTGTGGCAGATCTTGATGA+TGG 0.654797 7.2:+40331427 MS.gene46166:CDS
ATAGCTGAAATTGGAGACAA+GGG 0.660206 7.2:-40332624 None:intergenic
TTGCCTAAACAATTCCGTCG+AGG 0.663253 7.2:+40331655 MS.gene46166:CDS
AAAGCTGGTGAAGATAATTG+CGG 0.678881 7.2:+40332510 MS.gene46166:CDS
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.2:+40331483 MS.gene46166:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTAATGAATTTATTAAA+AGG + chr7.2:40332534-40332553 MS.gene46166:CDS 10.0%
!! AGTTAATGAATTTATTAAAA+GGG + chr7.2:40332535-40332554 MS.gene46166:CDS 10.0%
!! GTTAATGAATTTATTAAAAG+GGG + chr7.2:40332536-40332555 MS.gene46166:CDS 15.0%
!! ACAAACAAAAGCAAAAATTT+AGG - chr7.2:40331858-40331877 None:intergenic 20.0%
!! CAAACAAAAGCAAAAATTTA+GGG - chr7.2:40331857-40331876 None:intergenic 20.0%
!! TTTCTATTACGAATTGATAT+AGG + chr7.2:40332014-40332033 MS.gene46166:intron 20.0%
!! TTTGAATGCATTTATTTACT+TGG + chr7.2:40332764-40332783 MS.gene46166:intron 20.0%
!!! ACTTTGACAGATATTTTTTT+TGG + chr7.2:40332075-40332094 MS.gene46166:CDS 20.0%
!!! CTTTGACAGATATTTTTTTT+GGG + chr7.2:40332076-40332095 MS.gene46166:CDS 20.0%
!!! TATTACTGTTTTAGTGATAA+TGG + chr7.2:40332468-40332487 MS.gene46166:CDS 20.0%
! CTAGTTATAAGAAAATCTGA+TGG + chr7.2:40332177-40332196 MS.gene46166:CDS 25.0%
! GTAAAAACATGTTAAGTACT+TGG - chr7.2:40331557-40331576 None:intergenic 25.0%
! TCATGTAATGTTGAAATTAG+TGG + chr7.2:40332132-40332151 MS.gene46166:CDS 25.0%
! TGGATACTAGAATTTAACTA+TGG + chr7.2:40332784-40332803 MS.gene46166:intron 25.0%
!! AAACTTCTTTTGAACGAAAT+AGG + chr7.2:40331253-40331272 MS.gene46166:CDS 25.0%
!! ATATTTAAAGTTAAGAGAGG+TGG - chr7.2:40331957-40331976 None:intergenic 25.0%
!! GCAATATTTAAAGTTAAGAG+AGG - chr7.2:40331960-40331979 None:intergenic 25.0%
!! TTACCTTTCTTATTGTTTTC+AGG + chr7.2:40332814-40332833 MS.gene46166:intron 25.0%
!!! CTTTTTTAACTTCAGTTAAC+AGG - chr7.2:40332901-40332920 None:intergenic 25.0%
AAAACATGTTAAGTACTTGG+TGG - chr7.2:40331554-40331573 None:intergenic 30.0%
AAACATGTTAAGTACTTGGT+GGG - chr7.2:40331553-40331572 None:intergenic 30.0%
AAACTCACTCTATAAAAGTG+TGG + chr7.2:40331411-40331430 MS.gene46166:CDS 30.0%
AATATCTGTCAAAGTAGACT+TGG - chr7.2:40332070-40332089 None:intergenic 30.0%
ACAGTAATATTCCAGAACTT+CGG - chr7.2:40332457-40332476 None:intergenic 30.0%
AGCTTTCTTACTATTCCTTT+GGG + chr7.2:40332249-40332268 MS.gene46166:CDS 30.0%
AGTAAACCTATAGCTGAAAT+TGG - chr7.2:40332636-40332655 None:intergenic 30.0%
TCTCAATGTCACTAAAGAAA+AGG + chr7.2:40331810-40331829 MS.gene46166:CDS 30.0%
TGCTTGCTTAATGTTAAATG+CGG - chr7.2:40332414-40332433 None:intergenic 30.0%
TGGAATTAAAAACCCAAGTT+TGG + chr7.2:40331774-40331793 MS.gene46166:CDS 30.0%
TGTTTACATTATTCCAAAGC+TGG + chr7.2:40332495-40332514 MS.gene46166:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG - chr7.2:40331251-40331270 None:intergenic 30.0%
TTGTTTAGGCAAAACTTGAT+AGG - chr7.2:40331647-40331666 None:intergenic 30.0%
! TCTTGATGATTTGAAGGAAA+AGG + chr7.2:40332674-40332693 MS.gene46166:CDS 30.0%
! TTTAACTTCAGTTAACAGGT+GGG - chr7.2:40332897-40332916 None:intergenic 30.0%
! TTTTCCTTCAAATCATCAAG+AGG - chr7.2:40332675-40332694 None:intergenic 30.0%
!! ACAATGTCAGAGTTATTTTG+TGG + chr7.2:40331889-40331908 MS.gene46166:intron 30.0%
!! GGTTTTTAATTCCAAATTCC+TGG - chr7.2:40331768-40331787 None:intergenic 30.0%
!!! TTTTAACTTCAGTTAACAGG+TGG - chr7.2:40332898-40332917 None:intergenic 30.0%
AAAGCTGGTGAAGATAATTG+CGG + chr7.2:40332510-40332529 MS.gene46166:CDS 35.0%
AACATTTCCTTCACCAAACT+TGG - chr7.2:40331790-40331809 None:intergenic 35.0%
ACATTTCCTTCACCAAACTT+GGG - chr7.2:40331789-40331808 None:intergenic 35.0%
ACTCATGAAGGTTATGTCAA+GGG + chr7.2:40332561-40332580 MS.gene46166:CDS 35.0%
AGCTTCTTAACAATGCCTTT+AGG + chr7.2:40331328-40331347 MS.gene46166:CDS 35.0%
ATAGCTGAAATTGGAGACAA+GGG - chr7.2:40332627-40332646 None:intergenic 35.0%
CAGTAATATTCCAGAACTTC+GGG - chr7.2:40332456-40332475 None:intergenic 35.0%
CTTGCATTGTCAATACAACT+TGG - chr7.2:40331733-40331752 None:intergenic 35.0%
CTTGCTTAATGTTAAATGCG+GGG - chr7.2:40332412-40332431 None:intergenic 35.0%
GAGCCTGAAAACAATAAGAA+AGG - chr7.2:40332820-40332839 None:intergenic 35.0%
GAGCTTTCTTACTATTCCTT+TGG + chr7.2:40332248-40332267 MS.gene46166:CDS 35.0%
GCTTGCTTAATGTTAAATGC+GGG - chr7.2:40332413-40332432 None:intergenic 35.0%
TAGAGAAGGAATCTGACATA+GGG + chr7.2:40331368-40331387 MS.gene46166:CDS 35.0%
TATAGCTGAAATTGGAGACA+AGG - chr7.2:40332628-40332647 None:intergenic 35.0%
TATCGAAAGCAGCTAAGAAT+AGG + chr7.2:40332367-40332386 MS.gene46166:CDS 35.0%
TTGTCTCCAATTTCAGCTAT+AGG + chr7.2:40332627-40332646 MS.gene46166:CDS 35.0%
TTTGGAGAGAATTGTTCGTT+GGG + chr7.2:40332288-40332307 MS.gene46166:CDS 35.0%
! AACACCTCTTGATGATTTGA+AGG + chr7.2:40332668-40332687 MS.gene46166:CDS 35.0%
! GGACGAATTACTCGTATTTT+TGG + chr7.2:40332270-40332289 MS.gene46166:CDS 35.0%
! GTATTGACAATGCAAGCTTT+GGG + chr7.2:40331737-40331756 MS.gene46166:CDS 35.0%
! TAAAAACCCAAGTTTGGTGA+AGG + chr7.2:40331780-40331799 MS.gene46166:CDS 35.0%
! TGTATTGACAATGCAAGCTT+TGG + chr7.2:40331736-40331755 MS.gene46166:CDS 35.0%
!! TTTTGGAGAGAATTGTTCGT+TGG + chr7.2:40332287-40332306 MS.gene46166:CDS 35.0%
!!! CATCAAGAGGTGTTTTGAAA+CGG - chr7.2:40332662-40332681 None:intergenic 35.0%
AAGGAAAAGGTTGTCACCAT+TGG + chr7.2:40332687-40332706 MS.gene46166:CDS 40.0%
AATCCTCGACGGAATTGTTT+AGG - chr7.2:40331661-40331680 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG - chr7.2:40331346-40331365 None:intergenic 40.0%
ATACGAGTAATTCGTCCCAA+AGG - chr7.2:40332267-40332286 None:intergenic 40.0%
CACCATTAACAAATCCTCGA+CGG - chr7.2:40331672-40331691 None:intergenic 40.0%
CACTCATGAAGGTTATGTCA+AGG + chr7.2:40332560-40332579 MS.gene46166:CDS 40.0%
GCAATTATCTTCACCAGCTT+TGG - chr7.2:40332511-40332530 None:intergenic 40.0%
GTACGTTGCTACTGATGATT+TGG + chr7.2:40332593-40332612 MS.gene46166:CDS 40.0%
GTAGAGAAGGAATCTGACAT+AGG + chr7.2:40331367-40331386 MS.gene46166:CDS 40.0%
TACTACTTCTACTCAAGCAG+AGG + chr7.2:40331213-40331232 MS.gene46166:CDS 40.0%
TCTTACCTCCTTAACTCCAA+TGG - chr7.2:40332706-40332725 None:intergenic 40.0%
TTAAAAGGGGTCACTCATGA+AGG + chr7.2:40332549-40332568 MS.gene46166:CDS 40.0%
TTGGGAAGAAACCATCTGTT+GGG + chr7.2:40332094-40332113 MS.gene46166:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG + chr7.2:40331345-40331364 MS.gene46166:CDS 40.0%
TTTGGGAAGAAACCATCTGT+TGG + chr7.2:40332093-40332112 MS.gene46166:CDS 40.0%
! ATACATCTAAGTGTCGCTGT+GGG + chr7.2:40331611-40331630 MS.gene46166:CDS 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG + chr7.2:40331280-40331299 MS.gene46166:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG - chr7.2:40331493-40331512 None:intergenic 40.0%
!! TGATGGTTGTTTCTCTACTG+AGG + chr7.2:40331444-40331463 MS.gene46166:CDS 40.0%
!! TTCCGTCGAGGATTTGTTAA+TGG + chr7.2:40331667-40331686 MS.gene46166:CDS 40.0%
AAGAAACCATCTGTTGGGGT+TGG + chr7.2:40332099-40332118 MS.gene46166:CDS 45.0%
AATTCTTGAGCCCGAAGTTC+TGG + chr7.2:40332443-40332462 MS.gene46166:CDS 45.0%
AGAACTTCGGGCTCAAGAAT+TGG - chr7.2:40332444-40332463 None:intergenic 45.0%
AGAAGCAGGTAAGGACTTTG+TGG + chr7.2:40331294-40331313 MS.gene46166:CDS 45.0%
AGAGGTGGTTGTAGAGAAGT+GGG - chr7.2:40331942-40331961 None:intergenic 45.0%
AGTGTGGCAGATCTTGATGA+TGG + chr7.2:40331427-40331446 MS.gene46166:CDS 45.0%
CAAGATCCTTTGTGCTCAAG+GGG + chr7.2:40332200-40332219 MS.gene46166:CDS 45.0%
CATTGCGAGATTGGTAGAGA+AGG + chr7.2:40331354-40331373 MS.gene46166:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG - chr7.2:40331356-40331375 None:intergenic 45.0%
CTTGTTTGCAGAAGCAGGTA+AGG + chr7.2:40331285-40331304 MS.gene46166:CDS 45.0%
GACATAGGGCAAGTTACAGT+CGG + chr7.2:40331382-40331401 MS.gene46166:CDS 45.0%
GCAAGATCCTTTGTGCTCAA+GGG + chr7.2:40332199-40332218 MS.gene46166:CDS 45.0%
GGTTGTCACCATTGGAGTTA+AGG + chr7.2:40332695-40332714 MS.gene46166:CDS 45.0%
GTGGGCAAGACCATTTGTAA+GGG - chr7.2:40332879-40332898 None:intergenic 45.0%
GTTAAATGCGGGGAAATGCA+AGG - chr7.2:40332402-40332421 None:intergenic 45.0%
TCAACATCCGCCCTTACAAA+TGG + chr7.2:40332866-40332885 MS.gene46166:CDS 45.0%
TCAGTAGCAACGTACATAGC+TGG - chr7.2:40332588-40332607 None:intergenic 45.0%
TGGGAAGAAACCATCTGTTG+GGG + chr7.2:40332095-40332114 MS.gene46166:CDS 45.0%
TGTCACCATTGGAGTTAAGG+AGG + chr7.2:40332698-40332717 MS.gene46166:CDS 45.0%
TTGCCTAAACAATTCCGTCG+AGG + chr7.2:40331655-40331674 MS.gene46166:CDS 45.0%
TTTGGGCTACTCCAGGAATT+TGG + chr7.2:40331754-40331773 MS.gene46166:CDS 45.0%
! GATACATCTAAGTGTCGCTG+TGG + chr7.2:40331610-40331629 MS.gene46166:CDS 45.0%
!! AGAGAAGTGGGCTACTTAGA+AGG - chr7.2:40331930-40331949 None:intergenic 45.0%
CTTGTTCCCCTTGAGCACAA+AGG - chr7.2:40332209-40332228 None:intergenic 50.0%
GAGAGGTGGTTGTAGAGAAG+TGG - chr7.2:40331943-40331962 None:intergenic 50.0%
GCTGCAACCAATCAACTCAG+CGG + chr7.2:40331483-40331502 MS.gene46166:CDS 50.0%
GGCAAGACCATTTGTAAGGG+CGG - chr7.2:40332876-40332895 None:intergenic 50.0%
GGCAAGATCCTTTGTGCTCA+AGG + chr7.2:40332198-40332217 MS.gene46166:CDS 50.0%
GGTGGGCAAGACCATTTGTA+AGG - chr7.2:40332880-40332899 None:intergenic 50.0%
! GTGGGCTACTTAGAAGGTCA+GGG - chr7.2:40331924-40331943 None:intergenic 50.0%
!! AGTGGGCTACTTAGAAGGTC+AGG - chr7.2:40331925-40331944 None:intergenic 50.0%
AACCTGCCAACCCCAACAGA+TGG - chr7.2:40332108-40332127 None:intergenic 55.0%
! AACCATCTGTTGGGGTTGGC+AGG + chr7.2:40332103-40332122 MS.gene46166:CDS 55.0%
!! TGCAAGCTTTGGGCTACTCC+AGG + chr7.2:40331747-40331766 MS.gene46166:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 40331205 40332928 40331205 ID=MS.gene46166
chr7.2 mRNA 40331205 40332928 40331205 ID=MS.gene46166.t1;Parent=MS.gene46166
chr7.2 exon 40331205 40331831 40331205 ID=MS.gene46166.t1.exon1;Parent=MS.gene46166.t1
chr7.2 CDS 40331205 40331831 40331205 ID=cds.MS.gene46166.t1;Parent=MS.gene46166.t1
chr7.2 exon 40332036 40332719 40332036 ID=MS.gene46166.t1.exon2;Parent=MS.gene46166.t1
chr7.2 CDS 40332036 40332719 40332036 ID=cds.MS.gene46166.t1;Parent=MS.gene46166.t1
chr7.2 exon 40332836 40332928 40332836 ID=MS.gene46166.t1.exon3;Parent=MS.gene46166.t1
chr7.2 CDS 40332836 40332928 40332836 ID=cds.MS.gene46166.t1;Parent=MS.gene46166.t1
Gene Sequence

>MS.gene46166

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCAGCATGTGTCCTTGAAACTTCTTTTGAACGAAATAGGTAACAAAGTCTTGTTTGCAGAAGCAGGTAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTGACATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGATGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGACGACACTCAACCCACCAAGTACTTAACATGTTTTTACTACGCTCATGATTTGATAAAATCAACAATTAAAGATACATCTAAGTGTCGCTGTGGGAATTCTTTGTCCTATCAAGTTTTGCCTAAACAATTCCGTCGAGGATTTGTTAATGGTGTTGCTACTTTTGTGATAACTGATGATCTGAATGTCATTCCAAGTTGTATTGACAATGCAAGCTTTGGGCTACTCCAGGAATTTGGAATTAAAAACCCAAGTTTGGTGAAGGAAATGTTTCTCAATGTCACTAAAGAAAAGGTTTTGTATTTGAATTTCTATTCCCTAAATTTTTGCTTTTGTTTGTTTTTTGAATGAACAATGTCAGAGTTATTTTGTGGATATATAATCCCTGACCTTCTAAGTAGCCCACTTCTCTACAACCACCTCTCTTAACTTTAAATATTGCTATTTTTTTTTTTTATCAATTATGTTTGCTAATTTTTCTATTACGAATTGATATAGGTACTTGATTTACTAAAATGCTCTTTGCTCTCCAAGTCTACTTTGACAGATATTTTTTTTGGGAAGAAACCATCTGTTGGGGTTGGCAGGTTTTTCTCATGTAATGTTGAAATTAGTGGCAATATGCAAATCATTTTAAAACTAGTTATAAGAAAATCTGATGGCAAGATCCTTTGTGCTCAAGGGGAACAAGATTTTGCAGACTTACTTTTGAGCTTTCTTACTATTCCTTTGGGACGAATTACTCGTATTTTTGGAGAGAATTGTTCGTTGGGCAGCATTAATCGATTCATCAAGAGTGTAGCTGATTTAAATGAAAAGAAATATTTCATATCGAAAGCAGCTAAGAATAGGATTGTTGATCCTTGCATTTCCCCGCATTTAACATTAAGCAAGCAAATATTACCAATTCTTGAGCCCGAAGTTCTGGAATATTACTGTTTTAGTGATAATGGTATTTGTTTACATTATTCCAAAGCTGGTGAAGATAATTGCGGAAAGTTAATGAATTTATTAAAAGGGGTCACTCATGAAGGTTATGTCAAGGGTCCAGCTATGTACGTTGCTACTGATGATTTGGTCATTGCACCCTTGTCTCCAATTTCAGCTATAGGTTTACTTAACCGTTTCAAAACACCTCTTGATGATTTGAAGGAAAAGGTTGTCACCATTGGAGTTAAGGAGGTAAGAAATTGTAAAAATTACTAGTGTAGATTTTTATGCTCATTTTTGAATGCATTTATTTACTTGGATACTAGAATTTAACTATGGCTTATATTTACCTTTCTTATTGTTTTCAGGCTCTCAGCATATTGAATGCTGCTTTAACTTCAACATCCGCCCTTACAAATGGTCTTGCCCACCTGTTAACTGAAGTTAAAAAAGAGAAGTGA
Protein sequence

>MS.gene46166.t1

MAATTSTQAEEQHVSLKLLLNEIGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESDIGQVTVGCLNSLYKSVADLDDGCFSTEAIKQMLLQPINSAEDYCNTLKLNIDDTQPTKYLTCFYYAHDLIKSTIKDTSKCRCGNSLSYQVLPKQFRRGFVNGVATFVITDDLNVIPSCIDNASFGLLQEFGIKNPSLVKEMFLNVTKEKVLDLLKCSLLSKSTLTDIFFGKKPSVGVGRFFSCNVEISGNMQIILKLVIRKSDGKILCAQGEQDFADLLLSFLTIPLGRITRIFGENCSLGSINRFIKSVADLNEKKYFISKAAKNRIVDPCISPHLTLSKQILPILEPEVLEYYCFSDNGICLHYSKAGEDNCGKLMNLLKGVTHEGYVKGPAMYVATDDLVIAPLSPISAIGLLNRFKTPLDDLKEKVVTIGVKEALSILNAALTSTSALTNGLAHLLTEVKKEK