AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94745.t1 MTR_7g066430 79.722 503 81 2 1 483 1 502 0.0 800
MS.gene94745.t1 MTR_7g066410 51.485 505 201 6 4 466 10 512 9.54e-168 483
MS.gene94745.t1 MTR_7g066570 46.653 493 218 9 5 472 15 487 1.16e-133 398
MS.gene94745.t1 MTR_7g012680 45.957 470 220 8 4 471 14 451 3.24e-123 367
MS.gene94745.t1 MTR_7g066260 44.086 465 241 7 4 466 15 462 1.03e-121 365
MS.gene94745.t1 MTR_7g066260 27.876 226 141 5 255 460 12 235 7.64e-18 86.3
MS.gene94745.t1 MTR_7g058710 41.975 486 239 8 4 466 12 477 9.99e-121 362
MS.gene94745.t1 MTR_7g066480 46.694 484 175 11 4 474 16 429 1.43e-120 360
MS.gene94745.t1 MTR_7g066490 44.842 475 185 9 3 474 15 415 7.44e-116 347
MS.gene94745.t1 MTR_7g066350 43.629 463 231 11 4 462 9 445 1.45e-111 338
MS.gene94745.t1 MTR_1g041315 42.299 461 229 10 4 450 14 451 7.95e-111 337
MS.gene94745.t1 MTR_7g066340 42.979 470 233 11 4 466 12 453 1.13e-108 331
MS.gene94745.t1 MTR_7g062280 40.202 495 245 9 4 466 10 485 6.71e-108 329
MS.gene94745.t1 MTR_7g066580 40.408 490 224 10 10 473 1 448 2.11e-106 324
MS.gene94745.t1 MTR_7g062300 40.211 475 253 6 4 463 12 470 3.73e-102 314
MS.gene94745.t1 MTR_7g066290 41.737 472 213 10 4 466 15 433 1.90e-101 311
MS.gene94745.t1 MTR_7g066290 26.267 217 138 5 247 443 4 218 1.94e-11 66.2
MS.gene94745.t1 MTR_7g063660 39.540 478 259 10 4 466 9 471 1.38e-100 310
MS.gene94745.t1 MTR_7g063660 29.596 223 131 8 257 460 8 223 1.13e-15 79.7
MS.gene94745.t1 MTR_7g066360 40.803 473 243 10 2 469 12 452 1.45e-98 305
MS.gene94745.t1 MTR_7g063900 41.344 491 242 11 4 466 10 482 3.12e-97 302
MS.gene94745.t1 MTR_7g063900 24.658 219 149 5 257 460 9 226 1.35e-13 73.2
MS.gene94745.t1 MTR_7g066400 38.854 471 231 11 2 462 10 433 4.59e-96 297
MS.gene94745.t1 MTR_7g063840 38.115 488 245 11 5 466 11 467 2.36e-91 286
MS.gene94745.t1 MTR_7g058700 39.917 481 188 11 16 479 531 927 4.62e-91 297
MS.gene94745.t1 MTR_7g063880 37.657 478 257 9 4 466 11 462 2.66e-90 283
MS.gene94745.t1 MTR_7g063820 38.821 492 258 12 5 471 11 484 4.33e-89 281
MS.gene94745.t1 MTR_3g007740 39.362 470 242 10 4 466 9 442 6.72e-89 279
MS.gene94745.t1 MTR_3g007740 26.222 225 125 7 257 460 8 212 4.65e-13 71.2
MS.gene94745.t1 MTR_7g063830 39.619 472 241 11 5 471 11 443 5.89e-88 276
MS.gene94745.t1 MTR_7g063920 36.538 468 244 5 4 466 11 430 1.49e-82 262
MS.gene94745.t1 MTR_4g019310 37.323 493 261 13 4 462 8 486 1.87e-80 259
MS.gene94745.t1 MTR_7g063890 38.431 497 247 12 4 466 27 498 3.70e-80 258
MS.gene94745.t1 MTR_7g063890 29.224 219 138 5 257 460 26 242 1.07e-18 89.0
MS.gene94745.t1 MTR_7g063670 39.574 470 242 10 5 466 16 451 1.85e-79 255
MS.gene94745.t1 MTR_2g029400 35.032 471 209 7 4 456 14 405 4.72e-79 252
MS.gene94745.t1 MTR_3g065200 33.191 470 230 12 3 452 2 407 1.74e-70 231
MS.gene94745.t1 MTR_4g019340 34.382 477 272 11 5 454 39 501 4.09e-65 219
MS.gene94745.t1 MTR_4g017830 33.723 513 269 16 5 468 13 503 2.04e-61 209
MS.gene94745.t1 MTR_4g017830 27.826 230 144 6 255 462 9 238 9.04e-13 70.9
MS.gene94745.t1 MTR_4g017610 32.245 490 270 11 7 463 16 476 2.72e-61 207
MS.gene94745.t1 MTR_4g017610 28.085 235 143 5 253 462 8 241 3.26e-15 78.2
MS.gene94745.t1 MTR_4g017440 31.423 506 289 12 5 468 15 504 2.68e-60 206
MS.gene94745.t1 MTR_7g066680 41.391 302 126 5 208 462 37 334 5.42e-58 195
MS.gene94745.t1 MTR_4g017410 31.202 516 295 16 1 476 1 496 6.23e-57 197
MS.gene94745.t1 MTR_7g066280 34.101 434 192 16 83 466 1 390 5.93e-54 187
MS.gene94745.t1 MTR_1g014060 44.076 211 114 3 13 223 9 215 1.24e-51 180
MS.gene94745.t1 MTR_1g014060 44.681 188 93 3 288 471 210 390 3.45e-35 135
MS.gene94745.t1 MTR_1g014060 30.144 209 113 7 267 451 9 208 5.10e-15 77.0
MS.gene94745.t1 MTR_4g017470 30.116 518 268 11 5 476 13 482 2.30e-50 179
MS.gene94745.t1 MTR_4g017470 25.664 226 124 7 253 462 7 204 4.06e-11 65.5
MS.gene94745.t1 MTR_7g066310 41.667 252 123 5 216 466 155 383 1.15e-48 172
MS.gene94745.t1 MTR_7g066310 46.809 141 73 2 4 143 7 146 2.67e-34 133
MS.gene94745.t1 MTR_4g017550 31.174 494 264 18 18 462 3 469 2.72e-48 173
MS.gene94745.t1 MTR_7g063720 41.232 211 103 4 261 463 26 223 3.36e-42 150
MS.gene94745.t1 MTR_7g063720 27.826 230 130 7 2 225 21 220 3.79e-15 75.5
MS.gene94745.t1 MTR_7g100420 37.464 347 183 11 130 462 67 393 6.06e-39 146
MS.gene94745.t1 MTR_7g062270 40.116 172 99 1 5 176 11 178 1.98e-35 136
MS.gene94745.t1 MTR_7g063850 35.458 251 137 9 238 471 46 288 2.75e-32 125
MS.gene94745.t1 MTR_8g023240 27.551 490 273 19 5 458 38 481 1.21e-31 128
MS.gene94745.t1 MTR_7g066390 35.714 168 62 3 299 466 1 122 7.68e-20 86.7
MS.gene94745.t1 MTR_8g445860 29.218 243 147 7 2 233 11 239 2.10e-17 82.0
MS.gene94745.t1 MTR_7g063690 36.424 151 87 3 135 285 81 222 5.16e-17 80.9
MS.gene94745.t1 MTR_7g063690 62.500 48 18 0 5 52 13 60 1.12e-11 65.1
MS.gene94745.t1 MTR_4g019240 44.330 97 46 2 5 93 14 110 3.50e-16 77.0
MS.gene94745.t1 MTR_1g115440 27.801 241 147 7 4 230 11 238 1.03e-14 73.9
MS.gene94745.t1 MTR_0150s0010 27.350 234 157 4 4 230 10 237 3.95e-13 69.3
MS.gene94745.t1 MTR_1g115455 27.668 253 137 9 2 233 7 234 5.60e-13 68.9
MS.gene94745.t1 MTR_7g063760 52.239 67 31 1 401 466 1 67 1.08e-12 63.5
MS.gene94745.t1 MTR_2g067310 31.447 159 66 4 15 173 58 173 1.29e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94745.t1 AT5G01140 31.313 495 282 13 4 482 9 461 3.05e-60 205
MS.gene94745.t1 AT5G01120 32.924 489 284 12 5 462 10 485 6.34e-59 202
MS.gene94745.t1 AT3G09140 31.650 515 288 17 2 472 7 501 2.83e-58 200
MS.gene94745.t1 AT5G01150 30.512 508 305 11 4 479 9 500 2.68e-56 195
MS.gene94745.t1 AT3G09140 30.074 542 289 17 2 472 7 529 1.21e-55 194
MS.gene94745.t1 AT5G43240 30.645 496 290 12 5 462 10 489 2.12e-55 193
MS.gene94745.t1 AT5G43240 30.645 496 290 12 5 462 10 489 2.12e-55 193
MS.gene94745.t1 AT5G43240 30.645 496 290 12 5 462 10 489 2.12e-55 193
MS.gene94745.t1 AT3G09110 35.395 291 180 5 4 293 9 292 3.00e-50 175
MS.gene94745.t1 AT3G09120 35.577 312 182 8 2 304 4 305 8.20e-50 173
MS.gene94745.t1 AT3G09120 25.551 227 148 4 255 460 3 229 1.24e-12 69.3
MS.gene94745.t1 AT5G01130 30.064 469 281 12 4 462 9 440 5.03e-48 172
MS.gene94745.t1 AT5G37320 28.313 498 307 13 3 471 8 484 1.77e-42 157
MS.gene94745.t1 AT5G43240 27.327 333 197 9 160 462 28 345 3.18e-18 86.7

Find 78 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCGAAGAACAACAATTT+TGG 0.193641 7.1:-35442942 MS.gene94745:CDS
TATTCTTCCATTGAATTCTT+TGG 0.235584 7.1:+35442889 None:intergenic
TGGGATTCCTTCTTCCGATT+TGG 0.309886 7.1:-35441592 MS.gene94745:CDS
CGGGGTAGAACACATGTTAA+AGG 0.327870 7.1:-35442045 MS.gene94745:CDS
CAAATTTAAAATGCAGTTGC+GGG 0.349657 7.1:-35442756 MS.gene94745:CDS
AATGCCCAACCCTGTTGTAT+TGG 0.354168 7.1:-35442216 MS.gene94745:CDS
ATACAAGAGCATTCTTGAAT+TGG 0.356892 7.1:-35441991 MS.gene94745:CDS
TCGTCTTCTGCTCTGACTAA+TGG 0.361646 7.1:-35441414 MS.gene94745:CDS
AAATTGTTGTTCTTCGAGAT+TGG 0.371839 7.1:+35442945 None:intergenic
CTAGTGACACAAAATATATT+AGG 0.371958 7.1:+35441855 None:intergenic
CTTACCTTCTCAATGTTAGA+TGG 0.375496 7.1:+35443003 None:intergenic
TTCAAGTGCAAGAAGATTCA+TGG 0.391251 7.1:+35442594 None:intergenic
AACATTGAGAAGGTAAGCTT+TGG 0.398082 7.1:-35442997 MS.gene94745:CDS
GTGTCAAAATCCAATACAAC+AGG 0.399319 7.1:+35442206 None:intergenic
TTGAATTGGTAGGCAAGTTT+CGG 0.408570 7.1:+35441918 None:intergenic
TTCTGATTTAAAATATAAGC+TGG 0.410321 7.1:-35441946 MS.gene94745:CDS
TCCTTACATTTCCCTTGGGC+GGG 0.415979 7.1:-35442064 MS.gene94745:CDS
CAAAGGGCAACAACTGGTTA+TGG 0.417245 7.1:+35441892 None:intergenic
TAGTTTCCTTACATTTCCCT+TGG 0.418561 7.1:-35442069 MS.gene94745:CDS
TTGGAGCCACAGTCATCAAT+TGG 0.423396 7.1:-35441738 MS.gene94745:CDS
TTTGTGTCACTAGACATAAT+AGG 0.426513 7.1:-35441845 MS.gene94745:intron
TCAACCTTGACTTTAAGAAA+TGG 0.427676 7.1:+35441384 None:intergenic
ACTGGTTATGGAGTTTGAAT+TGG 0.433564 7.1:+35441904 None:intergenic
TCTGCTCTGACTAATGGTCT+TGG 0.434350 7.1:-35441408 MS.gene94745:CDS
TCAAGGAGGCAAAGATTTCA+TGG 0.435034 7.1:-35443085 MS.gene94745:CDS
CTTTCCTCCAAATCGGAAGA+AGG 0.453157 7.1:+35441585 None:intergenic
GATTCCTTCTTCCGATTTGG+AGG 0.454490 7.1:-35441589 MS.gene94745:CDS
GATCATTCTTTCCTCCAAAT+CGG 0.457025 7.1:+35441578 None:intergenic
AAGCCTAGCAATTGTAGCTA+AGG 0.458301 7.1:+35443035 None:intergenic
TCTTCAACCAAAGAATTCAA+TGG 0.459163 7.1:-35442896 MS.gene94745:CDS
AAATCCAATACAACAGGGTT+GGG 0.475938 7.1:+35442212 None:intergenic
TTTCATCAAAGGGCAACAAC+TGG 0.478419 7.1:+35441886 None:intergenic
ACACAAAATATATTAGGATC+AGG 0.478516 7.1:+35441861 None:intergenic
AGTTTCCTTACATTTCCCTT+GGG 0.483205 7.1:-35442068 MS.gene94745:CDS
AATACTGTTAATGAAAATGA+AGG 0.484935 7.1:-35442182 MS.gene94745:CDS
GAGGAAAGAATGATCACCAT+TGG 0.489977 7.1:-35441570 MS.gene94745:CDS
GGATCAGGCATTTCATCAAA+GGG 0.495430 7.1:+35441876 None:intergenic
AGGATCAGGCATTTCATCAA+AGG 0.497099 7.1:+35441875 None:intergenic
TTCCTTACATTTCCCTTGGG+CGG 0.512120 7.1:-35442065 MS.gene94745:CDS
AAAATCCAATACAACAGGGT+TGG 0.520441 7.1:+35442211 None:intergenic
GGGGTAGAACACATGTTAAA+GGG 0.523293 7.1:-35442044 MS.gene94745:CDS
TCAAATTTAAAATGCAGTTG+CGG 0.524990 7.1:-35442757 MS.gene94745:CDS
TGGTCCATTTCTTAAAGTCA+AGG 0.525498 7.1:-35441388 MS.gene94745:CDS
TCAAGTGCAAGAAGATTCAT+GGG 0.529660 7.1:+35442595 None:intergenic
TCATCAATTGGCGAAGCGTA+TGG 0.532916 7.1:-35441726 MS.gene94745:CDS
TTCCCTTAGCTACAATTGCT+AGG 0.535607 7.1:-35443038 MS.gene94745:CDS
TCAGTCACCATGTAAAATGC+TGG 0.536470 7.1:+35441672 None:intergenic
TTACATGGTGACTGATGACT+TGG 0.536780 7.1:-35441664 MS.gene94745:CDS
CAGAGCAGAAGACGACATCA+AGG 0.539091 7.1:+35441422 None:intergenic
CCTTACATTTCCCTTGGGCG+GGG 0.543355 7.1:-35442063 MS.gene94745:CDS
AGGGAAGAAAATCAAAATGA+AGG 0.543698 7.1:-35442162 MS.gene94745:CDS
TATGGTGATTGTGGTGGAAG+AGG 0.543911 7.1:-35441708 MS.gene94745:CDS
AAAGCATAACATCGATGTCT+CGG 0.547614 7.1:-35442854 MS.gene94745:CDS
CCCCGCCCAAGGGAAATGTA+AGG 0.553475 7.1:+35442063 None:intergenic
GATCACCATTGGAAGAAAAG+AGG 0.570031 7.1:-35441559 MS.gene94745:intron
AGCCTAGCAATTGTAGCTAA+GGG 0.571248 7.1:+35443036 None:intergenic
CATGTGTTCTACCCCGCCCA+AGG 0.595789 7.1:+35442052 None:intergenic
TGCTTACAAGTTTATGACCG+TGG 0.605282 7.1:-35442563 MS.gene94745:CDS
ATGTGTTCTACCCCGCCCAA+GGG 0.607536 7.1:+35442053 None:intergenic
ATACTGTTAATGAAAATGAA+GGG 0.613393 7.1:-35442181 MS.gene94745:CDS
ATGACAGAAACAGAGGTACA+TGG 0.613741 7.1:+35441633 None:intergenic
CACGCCATCTAACATTGAGA+AGG 0.618774 7.1:-35443007 MS.gene94745:CDS
AGTGGTCAACAATCCACCAC+TGG 0.619436 7.1:+35442783 None:intergenic
GTTATGGAGTTTGAATTGGT+AGG 0.621781 7.1:+35441908 None:intergenic
TGAGACACTTCTCAAAGTCA+AGG 0.624137 7.1:-35441364 MS.gene94745:CDS
GGCGAAGCGTATGGTGATTG+TGG 0.624211 7.1:-35441717 MS.gene94745:CDS
AATTCTCAGTGAAATTTGTG+TGG 0.632684 7.1:+35443143 None:intergenic
TAGCACGCTGTATGAAAGTG+TGG 0.633787 7.1:-35442968 MS.gene94745:CDS
ATGTTAAAGGGAAACTCATG+TGG 0.642490 7.1:-35442032 MS.gene94745:CDS
TGTAGTCGTCAATCCAGTGG+TGG 0.663241 7.1:-35442796 MS.gene94745:CDS
GATTGTAGTCGTCAATCCAG+TGG 0.678128 7.1:-35442799 MS.gene94745:CDS
GCATAACATCGATGTCTCGG+AGG 0.684769 7.1:-35442851 MS.gene94745:CDS
AAATGAAATGACAGAAACAG+AGG 0.690630 7.1:+35441626 None:intergenic
CTCGTTGTAAGTGACATCCA+CGG 0.709374 7.1:+35442546 None:intergenic
GAAGCGTATGGTGATTGTGG+TGG 0.710145 7.1:-35441714 MS.gene94745:CDS
GCTTCGCCAATTGATGACTG+TGG 0.719643 7.1:+35441732 None:intergenic
TGTCAAAATCCAATACAACA+GGG 0.721928 7.1:+35442207 None:intergenic
CGTGGATGTCACTTACAACG+AGG 0.739877 7.1:-35442545 MS.gene94745:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGAATATTAGTATTTTAT+TGG - chr7.1:35442116-35442135 MS.gene94745:CDS 15.0%
!! AATACTGTTAATGAAAATGA+AGG - chr7.1:35442309-35442328 MS.gene94745:intron 20.0%
!! ATACTGTTAATGAAAATGAA+GGG - chr7.1:35442310-35442329 MS.gene94745:intron 20.0%
!! GAAGAAAAAATTGATAAAGA+AGG - chr7.1:35441791-35441810 MS.gene94745:intron 20.0%
!!! AACATATTGAATTTTCTGTA+AGG + chr7.1:35441982-35442001 None:intergenic 20.0%
!!! AATAAAGTTTTATTTGCTCA+AGG - chr7.1:35441389-35441408 MS.gene94745:CDS 20.0%
!!! ACATATTGAATTTTCTGTAA+GGG + chr7.1:35441981-35442000 None:intergenic 20.0%
!!! TGCAAATAAAATTTTGTTGT+TGG + chr7.1:35442370-35442389 None:intergenic 20.0%
!!! TTATTGTATTTTGTAGATAC+TGG - chr7.1:35442173-35442192 MS.gene94745:CDS 20.0%
!!! TTCTGATTTAAAATATAAGC+TGG - chr7.1:35442545-35442564 MS.gene94745:intron 20.0%
!!! TTTTGTATTTCTGATGATTT+AGG - chr7.1:35441836-35441855 MS.gene94745:intron 20.0%
! ACACAAAATATATTAGGATC+AGG + chr7.1:35442633-35442652 None:intergenic 25.0%
! CTAGTGACACAAAATATATT+AGG + chr7.1:35442639-35442658 None:intergenic 25.0%
! TATTCTTCCATTGAATTCTT+TGG + chr7.1:35441605-35441624 None:intergenic 25.0%
!! CATGGTTCATTTTATTCATT+TGG - chr7.1:35443013-35443032 MS.gene94745:CDS 25.0%
!! GCATTTTAAATTTGAGAAAG+TGG + chr7.1:35441729-35441748 None:intergenic 25.0%
!! TCAAATTTAAAATGCAGTTG+CGG - chr7.1:35441734-35441753 MS.gene94745:CDS 25.0%
!!! ATTTCATTTTTGAGTAAGCT+TGG - chr7.1:35442879-35442898 MS.gene94745:CDS 25.0%
!!! CGATGTTATGCTTTAATTTT+TGG + chr7.1:35441631-35441650 None:intergenic 25.0%
!!! TTTCATTTTTGAGTAAGCTT+GGG - chr7.1:35442880-35442899 MS.gene94745:CDS 25.0%
AAATGAAATGACAGAAACAG+AGG + chr7.1:35442868-35442887 None:intergenic 30.0%
AACTCTCTCGAAGTAATATA+TGG + chr7.1:35442714-35442733 None:intergenic 30.0%
AATTCTCAGTGAAATTTGTG+TGG + chr7.1:35441351-35441370 None:intergenic 30.0%
AGCAAAAAAATGTCTGTCAA+AGG + chr7.1:35442231-35442250 None:intergenic 30.0%
AGGGAAGAAAATCAAAATGA+AGG - chr7.1:35442329-35442348 MS.gene94745:intron 30.0%
GAACAATCTTGACAAAAACA+TGG + chr7.1:35442028-35442047 None:intergenic 30.0%
TCAACAAACTTCATTACACA+TGG - chr7.1:35442995-35443014 MS.gene94745:CDS 30.0%
TCTTCAACCAAAGAATTCAA+TGG - chr7.1:35441595-35441614 MS.gene94745:CDS 30.0%
TGTCAAAATCCAATACAACA+GGG + chr7.1:35442287-35442306 None:intergenic 30.0%
! AAATTGTTGTTCTTCGAGAT+TGG + chr7.1:35441549-35441568 None:intergenic 30.0%
! ATCTCGAAGAACAACAATTT+TGG - chr7.1:35441549-35441568 MS.gene94745:intron 30.0%
! ATGTGTTCCATTGAAGTTTT+TGG - chr7.1:35442734-35442753 MS.gene94745:CDS 30.0%
! ATTTACCTCTTTTCTTCCAA+TGG + chr7.1:35442940-35442959 None:intergenic 30.0%
! CAAATTTAAAATGCAGTTGC+GGG - chr7.1:35441735-35441754 MS.gene94745:CDS 30.0%
! TCAACCTTGACTTTAAGAAA+TGG + chr7.1:35443110-35443129 None:intergenic 30.0%
! TTTGTGTCACTAGACATAAT+AGG - chr7.1:35442646-35442665 MS.gene94745:CDS 30.0%
!! AGTTTTTAATATGCGTCGAT+TGG - chr7.1:35441669-35441688 MS.gene94745:CDS 30.0%
!! ATACAAGAGCATTCTTGAAT+TGG - chr7.1:35442500-35442519 MS.gene94745:intron 30.0%
!!! AAAGTTTTATTTGCTCAAGG+AGG - chr7.1:35441392-35441411 MS.gene94745:CDS 30.0%
!!! ATTCATTTGGTTTTGTTCCA+GGG - chr7.1:35443026-35443045 MS.gene94745:CDS 30.0%
!!! GTTTTTAATATGCGTCGATT+GGG - chr7.1:35441670-35441689 MS.gene94745:CDS 30.0%
!!! TATTCATTTGGTTTTGTTCC+AGG - chr7.1:35443025-35443044 MS.gene94745:CDS 30.0%
AAAATCCAATACAACAGGGT+TGG + chr7.1:35442283-35442302 None:intergenic 35.0%
AAAGCATAACATCGATGTCT+CGG - chr7.1:35441637-35441656 MS.gene94745:CDS 35.0%
AAATCCAATACAACAGGGTT+GGG + chr7.1:35442282-35442301 None:intergenic 35.0%
AACATTGAGAAGGTAAGCTT+TGG - chr7.1:35441494-35441513 MS.gene94745:intron 35.0%
ACTGGTTATGGAGTTTGAAT+TGG + chr7.1:35442590-35442609 None:intergenic 35.0%
AGACATAATAGGTGAAGAAC+TGG - chr7.1:35442657-35442676 MS.gene94745:CDS 35.0%
AGTTTCCTTACATTTCCCTT+GGG - chr7.1:35442423-35442442 MS.gene94745:intron 35.0%
ATGTTAAAGGGAAACTCATG+TGG - chr7.1:35442459-35442478 MS.gene94745:intron 35.0%
CTTACCTTCTCAATGTTAGA+TGG + chr7.1:35441491-35441510 None:intergenic 35.0%
GATCATTCTTTCCTCCAAAT+CGG + chr7.1:35442916-35442935 None:intergenic 35.0%
GTGTCAAAATCCAATACAAC+AGG + chr7.1:35442288-35442307 None:intergenic 35.0%
GTTATGGAGTTTGAATTGGT+AGG + chr7.1:35442586-35442605 None:intergenic 35.0%
TAGTTTCCTTACATTTCCCT+TGG - chr7.1:35442422-35442441 MS.gene94745:intron 35.0%
TCAAGTGCAAGAAGATTCAT+GGG + chr7.1:35441899-35441918 None:intergenic 35.0%
TGGTCCATTTCTTAAAGTCA+AGG - chr7.1:35443103-35443122 MS.gene94745:CDS 35.0%
TTCAAGTGCAAGAAGATTCA+TGG + chr7.1:35441900-35441919 None:intergenic 35.0%
TTGAATTGGTAGGCAAGTTT+CGG + chr7.1:35442576-35442595 None:intergenic 35.0%
AAGCCTAGCAATTGTAGCTA+AGG + chr7.1:35441459-35441478 None:intergenic 40.0%
AGCCTAGCAATTGTAGCTAA+GGG + chr7.1:35441458-35441477 None:intergenic 40.0%
AGGATCAGGCATTTCATCAA+AGG + chr7.1:35442619-35442638 None:intergenic 40.0%
CCAAAGCAGTTAAATGTGCA+TGG + chr7.1:35442686-35442705 None:intergenic 40.0%
CCATGCACATTTAACTGCTT+TGG - chr7.1:35442683-35442702 MS.gene94745:CDS 40.0%
CTTTCAAAATGCTAAGACCC+TGG + chr7.1:35443046-35443065 None:intergenic 40.0%
GAGGAAAGAATGATCACCAT+TGG - chr7.1:35442921-35442940 MS.gene94745:CDS 40.0%
GATCACCATTGGAAGAAAAG+AGG - chr7.1:35442932-35442951 MS.gene94745:CDS 40.0%
GGATCAGGCATTTCATCAAA+GGG + chr7.1:35442618-35442637 None:intergenic 40.0%
GGGGTAGAACACATGTTAAA+GGG - chr7.1:35442447-35442466 MS.gene94745:intron 40.0%
TCAAGGAGGCAAAGATTTCA+TGG - chr7.1:35441406-35441425 MS.gene94745:CDS 40.0%
TCAGTCACCATGTAAAATGC+TGG + chr7.1:35442822-35442841 None:intergenic 40.0%
TGAGACACTTCTCAAAGTCA+AGG - chr7.1:35443127-35443146 MS.gene94745:CDS 40.0%
TGCTTACAAGTTTATGACCG+TGG - chr7.1:35441928-35441947 MS.gene94745:CDS 40.0%
TGTGGCTCCAAAAACTTCAA+TGG + chr7.1:35442744-35442763 None:intergenic 40.0%
TTACATGGTGACTGATGACT+TGG - chr7.1:35442827-35442846 MS.gene94745:CDS 40.0%
TTCCCTTAGCTACAATTGCT+AGG - chr7.1:35441453-35441472 MS.gene94745:intron 40.0%
TTTCATCAAAGGGCAACAAC+TGG + chr7.1:35442608-35442627 None:intergenic 40.0%
! ATGACAGAAACAGAGGTACA+TGG + chr7.1:35442861-35442880 None:intergenic 40.0%
! GAAGAGTCCAGCATTTTACA+TGG - chr7.1:35442812-35442831 MS.gene94745:CDS 40.0%
!!! AGAAGCATTTTCTTACACGC+AGG + chr7.1:35441578-35441597 None:intergenic 40.0%
AATGCCCAACCCTGTTGTAT+TGG - chr7.1:35442275-35442294 MS.gene94745:CDS 45.0%
CAAAGGGCAACAACTGGTTA+TGG + chr7.1:35442602-35442621 None:intergenic 45.0%
CACGCCATCTAACATTGAGA+AGG - chr7.1:35441484-35441503 MS.gene94745:intron 45.0%
CGGGGTAGAACACATGTTAA+AGG - chr7.1:35442446-35442465 MS.gene94745:intron 45.0%
CTCGTTGTAAGTGACATCCA+CGG + chr7.1:35441948-35441967 None:intergenic 45.0%
CTTTCCTCCAAATCGGAAGA+AGG + chr7.1:35442909-35442928 None:intergenic 45.0%
GATTGTAGTCGTCAATCCAG+TGG - chr7.1:35441692-35441711 MS.gene94745:CDS 45.0%
TAGCACGCTGTATGAAAGTG+TGG - chr7.1:35441523-35441542 MS.gene94745:intron 45.0%
TCATCAATTGGCGAAGCGTA+TGG - chr7.1:35442765-35442784 MS.gene94745:CDS 45.0%
TCGTCTTCTGCTCTGACTAA+TGG - chr7.1:35443077-35443096 MS.gene94745:CDS 45.0%
TCTGCTCTGACTAATGGTCT+TGG - chr7.1:35443083-35443102 MS.gene94745:CDS 45.0%
TGGGATTCCTTCTTCCGATT+TGG - chr7.1:35442899-35442918 MS.gene94745:CDS 45.0%
TTCCTTACATTTCCCTTGGG+CGG - chr7.1:35442426-35442445 MS.gene94745:intron 45.0%
TTGGAGCCACAGTCATCAAT+TGG - chr7.1:35442753-35442772 MS.gene94745:CDS 45.0%
! TATGGTGATTGTGGTGGAAG+AGG - chr7.1:35442783-35442802 MS.gene94745:CDS 45.0%
!! GATTCCTTCTTCCGATTTGG+AGG - chr7.1:35442902-35442921 MS.gene94745:CDS 45.0%
AGTGGTCAACAATCCACCAC+TGG + chr7.1:35441711-35441730 None:intergenic 50.0%
CAGAGCAGAAGACGACATCA+AGG + chr7.1:35443072-35443091 None:intergenic 50.0%
GAAGCGTATGGTGATTGTGG+TGG - chr7.1:35442777-35442796 MS.gene94745:CDS 50.0%
GCATAACATCGATGTCTCGG+AGG - chr7.1:35441640-35441659 MS.gene94745:CDS 50.0%
TCCTTACATTTCCCTTGGGC+GGG - chr7.1:35442427-35442446 MS.gene94745:intron 50.0%
TGTAGTCGTCAATCCAGTGG+TGG - chr7.1:35441695-35441714 MS.gene94745:CDS 50.0%
! CGTGGATGTCACTTACAACG+AGG - chr7.1:35441946-35441965 MS.gene94745:CDS 50.0%
! GCTTCGCCAATTGATGACTG+TGG + chr7.1:35442762-35442781 None:intergenic 50.0%
ATGTGTTCTACCCCGCCCAA+GGG + chr7.1:35442441-35442460 None:intergenic 55.0%
CCTTACATTTCCCTTGGGCG+GGG - chr7.1:35442428-35442447 MS.gene94745:intron 55.0%
GGCGAAGCGTATGGTGATTG+TGG - chr7.1:35442774-35442793 MS.gene94745:CDS 55.0%
CATGTGTTCTACCCCGCCCA+AGG + chr7.1:35442442-35442461 None:intergenic 60.0%
CCCCGCCCAAGGGAAATGTA+AGG + chr7.1:35442431-35442450 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35441344 35443169 35441344 ID=MS.gene94745
chr7.1 mRNA 35441344 35443169 35441344 ID=MS.gene94745.t1;Parent=MS.gene94745
chr7.1 exon 35442546 35443169 35442546 ID=MS.gene94745.t1.exon1;Parent=MS.gene94745.t1
chr7.1 CDS 35442546 35443169 35442546 ID=cds.MS.gene94745.t1;Parent=MS.gene94745.t1
chr7.1 exon 35441846 35442324 35441846 ID=MS.gene94745.t1.exon2;Parent=MS.gene94745.t1
chr7.1 CDS 35441846 35442324 35441846 ID=cds.MS.gene94745.t1;Parent=MS.gene94745.t1
chr7.1 exon 35441560 35441785 35441560 ID=MS.gene94745.t1.exon3;Parent=MS.gene94745.t1
chr7.1 CDS 35441560 35441785 35441560 ID=cds.MS.gene94745.t1;Parent=MS.gene94745.t1
chr7.1 exon 35441344 35441466 35441344 ID=MS.gene94745.t1.exon4;Parent=MS.gene94745.t1
chr7.1 CDS 35441344 35441466 35441344 ID=cds.MS.gene94745.t1;Parent=MS.gene94745.t1
Gene Sequence

>MS.gene94745

ATGGCCACACAAATTTCACTGAGAATTCTGATCGATGAAGAGAAAAATAAAGTTTTATTTGCTCAAGGAGGCAAAGATTTCATGGATATCATGCTTAGTTTCTTAACATTTCCCTTAGCTACAATTGCTAGGCTTGTTAACACGCCATCTAACATTGAGAAGGTAAGCTTTGGAAGCATTAGCACGCTGTATGAAAGTGTGGCCAATCTCGAAGAACAACAATTTTGGACACCTGCGTGTAAGAAAATGCTTCTTCAACCAAAGAATTCAATGGAAGAATATTGCCAAAAATTAAAGCATAACATCGATGTCTCGGAGGAAACTAAGTTTTTAATATGCGTCGATTGGGATTGTAGTCGTCAATCCAGTGGTGGATTGTTGACCACTTTCTCAAATTTAAAATGCAGTTGCGGGAGTTTTATGTCTCAATCGATATATCTTGCTGATGAAGAAAAAATTGATAAAGAAGGATTTGTTGCAGATGCAGCAACTTTTTGTATTTCTGATGATTTAGGTGTGAAGTCTGATAGTTTTCAAAATTCTATCTGTGAACCCATGAATCTTCTTGCACTTGAAAACTTCAGTGCTTACAAGTTTATGACCGTGGATGTCACTTACAACGAGGTATGTTTTTCCCTTACAGAAAATTCAATATGTTATAAATATTTTGTTTACTGAATTCCATGTTTTTGTCAAGATTGTTCTTATTTTTTTTAGTCTAATATTTTGCAAGTGAATACGAGTATAGTTTTTGTAATTATATAATTAATAATGTGAATATTAGTATTTTATTGGCAAAAATTGCTTCATTTTTAATATAGCACATTGTTTATTGTATTTTGTAGATACTGGATTTGTTGAAGTGCTCTTTAGTCTCAAACACACCTTTGACAGACATTTTTTTGCTGAAGAAACAGAATATTGAGAATTCAATGCCCAACCCTGTTGTATTGGATTTTGACACTAATACTGTTAATGAAAATGAAGGGAAGAAAATCAAAATGAAGGTAATGCTGCAAAAATCCAACAACAAAATTTTATTTGCATTAGCTGATGCTGATTTTGCAGACTTCATTCTTAGTTTCCTTACATTTCCCTTGGGCGGGGTAGAACACATGTTAAAGGGAAACTCATGTGGATCAAGCATAGACAGTTTATACAAGAGCATTCTTGAATTGGACAGTGACACATACTTGAAATCTTCTGATTTAAAATATAAGCTGGTTAAACCGAAACTTGCCTACCAATTCAAACTCCATAACCAGTTGTTGCCCTTTGATGAAATGCCTGATCCTAATATATTTTGTGTCACTAGACATAATAGGTGAAGAACTGGTTTCCATGCACATTTAACTGCTTTGGAAGATCCATATATTACTTCGAGAGAGTTATGTGTTCCATTGAAGTTTTTGGAGCCACAGTCATCAATTGGCGAAGCGTATGGTGATTGTGGTGGAAGAGGATTCATGAAGAGTCCAGCATTTTACATGGTGACTGATGACTTGGTTGTCACGCCATGTACCTCTGTTTCTGTCATTTCATTTTTGAGTAAGCTTGGGATTCCTTCTTCCGATTTGGAGGAAAGAATGATCACCATTGGAAGAAAAGAGGTAAATTAAGCATGTCTATTTTCAGATTAGTATTTATTATTTCAACAAACTTCATTACACATGGTTCATTTTATTCATTTGGTTTTGTTCCAGGGTCTTAGCATTTTGAAAGCTTCCTTGATGTCGTCTTCTGCTCTGACTAATGGTCTTGGTCCATTTCTTAAAGTCAAGGTTGAGACACTTCTCAAAGTCAAGGATGAGAATATCTCAAACTAA
Protein sequence

>MS.gene94745.t1

MATQISLRILIDEEKNKVLFAQGGKDFMDIMLSFLTFPLATIARLVNTPSNIEKVSFGSISTLYESVANLEEQQFWTPACKKMLLQPKNSMEEYCQKLKHNIDVSEETKFLICVDWDCSRQSSGGLLTTFSNLKCSCGSFMSQSIYLADEEKIDKEGFVADAATFCISDDLGVKSDSFQNSICEPMNLLALENFSAYKFMTVDVTYNEILDLLKCSLVSNTPLTDIFLLKKQNIENSMPNPVVLDFDTNTVNENEGKKIKMKVMLQKSNNKILFALADADFADFILSFLTFPLGGVEHMLKGNSCGSSIDSLYKSILELDSDTYLKSSDLKYKLVKPKLAYQFKLHNQLLPFDEMPDPNIFCVTRHNRELCVPLKFLEPQSSIGEAYGDCGGRGFMKSPAFYMVTDDLVVTPCTSVSVISFLSKLGIPSSDLEERMITIGRKEGLSILKASLMSSSALTNGLGPFLKVKVETLLKVKDENISN