AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055183

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055183.t1 MTR_7g063880 69.136 486 96 8 2 450 3 471 0.0 625
MS.gene055183.t1 MTR_7g062300 49.793 482 190 14 1 440 1 472 1.48e-137 403
MS.gene055183.t1 MTR_7g063840 51.250 480 191 12 3 447 2 473 4.01e-137 402
MS.gene055183.t1 MTR_7g062280 48.081 495 205 9 1 447 1 491 8.54e-137 402
MS.gene055183.t1 MTR_7g063900 48.479 493 203 12 1 447 1 488 3.13e-132 390
MS.gene055183.t1 MTR_7g063660 46.680 482 210 10 5 447 4 477 3.46e-129 382
MS.gene055183.t1 MTR_7g063660 28.571 238 135 10 216 435 3 223 1.13e-13 73.2
MS.gene055183.t1 MTR_7g063920 46.186 485 171 9 2 447 3 436 3.38e-123 365
MS.gene055183.t1 MTR_7g063820 46.108 501 199 12 1 447 1 484 3.55e-121 362
MS.gene055183.t1 MTR_7g063830 46.377 483 184 11 1 447 1 444 8.05e-121 360
MS.gene055183.t1 MTR_7g063890 47.154 492 209 11 1 447 19 504 4.27e-111 337
MS.gene055183.t1 MTR_3g007740 44.792 480 187 13 3 442 2 443 6.78e-108 327
MS.gene055183.t1 MTR_7g063670 44.835 484 184 11 8 447 13 457 3.09e-105 320
MS.gene055183.t1 MTR_3g065200 44.470 434 196 15 11 428 4 408 2.93e-91 284
MS.gene055183.t1 MTR_7g066570 38.494 478 247 9 9 445 13 484 1.74e-90 286
MS.gene055183.t1 MTR_7g063850 52.174 299 103 7 180 448 1 289 5.58e-84 260
MS.gene055183.t1 MTR_7g012680 38.229 463 238 12 9 447 13 451 2.69e-81 258
MS.gene055183.t1 MTR_7g066260 37.370 479 224 15 8 439 11 460 6.64e-80 256
MS.gene055183.t1 MTR_7g058710 34.615 494 261 12 2 447 4 483 8.65e-74 240
MS.gene055183.t1 MTR_7g058710 26.016 246 150 8 222 450 12 242 3.40e-13 71.6
MS.gene055183.t1 MTR_7g066350 37.029 478 224 13 9 443 8 451 3.36e-71 232
MS.gene055183.t1 MTR_7g066580 35.604 455 260 12 16 444 1 448 4.31e-70 229
MS.gene055183.t1 MTR_7g066360 36.864 472 212 11 11 437 15 445 8.01e-70 229
MS.gene055183.t1 MTR_7g066430 34.553 492 261 13 11 447 5 490 5.73e-69 228
MS.gene055183.t1 MTR_1g014060 36.830 429 216 11 23 447 13 390 4.21e-67 219
MS.gene055183.t1 MTR_7g066340 33.401 491 239 13 1 441 1 453 6.19e-67 221
MS.gene055183.t1 MTR_7g066310 35.469 437 215 14 9 439 6 381 5.86e-66 217
MS.gene055183.t1 MTR_7g063720 48.594 249 106 7 201 446 2 231 1.64e-65 210
MS.gene055183.t1 MTR_7g063720 28.994 169 100 6 12 179 25 174 3.70e-11 63.5
MS.gene055183.t1 MTR_7g058700 33.477 463 205 8 22 447 531 927 6.12e-63 219
MS.gene055183.t1 MTR_1g041315 33.121 471 225 12 11 425 15 451 2.33e-61 207
MS.gene055183.t1 MTR_7g066290 34.086 487 213 16 1 437 1 429 1.84e-58 198
MS.gene055183.t1 MTR_7g066400 33.667 499 215 16 1 443 1 439 3.72e-58 197
MS.gene055183.t1 MTR_7g062270 48.990 198 98 3 3 198 2 198 2.46e-57 194
MS.gene055183.t1 MTR_7g062270 29.379 177 103 7 223 387 11 177 1.35e-11 66.2
MS.gene055183.t1 MTR_4g019310 31.631 509 270 18 5 448 3 498 8.15e-57 196
MS.gene055183.t1 MTR_7g066490 32.120 467 219 9 11 448 17 414 3.34e-53 184
MS.gene055183.t1 MTR_7g066480 34.100 478 197 15 11 442 17 422 4.84e-53 184
MS.gene055183.t1 MTR_2g029400 32.798 436 235 12 9 430 13 404 2.08e-51 179
MS.gene055183.t1 MTR_4g017410 30.368 517 260 22 3 447 2 490 1.43e-47 171
MS.gene055183.t1 MTR_4g017440 30.561 517 256 21 11 447 15 508 1.03e-46 169
MS.gene055183.t1 MTR_4g017830 30.534 524 270 24 1 447 1 507 4.39e-46 167
MS.gene055183.t1 MTR_7g100420 40.664 241 135 6 201 437 157 393 8.55e-40 147
MS.gene055183.t1 MTR_7g100420 74.468 47 12 0 7 53 36 82 4.94e-13 70.9
MS.gene055183.t1 MTR_7g066410 41.026 195 107 2 1 188 1 194 1.33e-39 149
MS.gene055183.t1 MTR_7g066410 36.481 233 135 5 222 443 284 514 2.34e-31 126
MS.gene055183.t1 MTR_4g017470 27.519 516 257 16 4 447 6 476 1.65e-39 149
MS.gene055183.t1 MTR_4g019340 29.283 502 253 21 1 429 29 501 7.38e-39 147
MS.gene055183.t1 MTR_7g066280 30.227 397 226 11 89 441 1 390 3.73e-38 143
MS.gene055183.t1 MTR_4g017610 28.049 492 271 19 6 437 7 475 1.60e-35 137
MS.gene055183.t1 MTR_7g063690 33.818 275 83 7 8 247 10 220 6.55e-30 117
MS.gene055183.t1 MTR_4g017550 27.386 482 239 23 37 437 18 469 4.27e-28 116
MS.gene055183.t1 MTR_4g017550 36.441 118 58 4 13 127 250 353 9.88e-13 70.1
MS.gene055183.t1 MTR_7g066680 32.937 252 130 6 222 437 86 334 5.83e-28 114
MS.gene055183.t1 MTR_7g063760 58.904 73 29 1 376 447 1 73 1.38e-22 91.3
MS.gene055183.t1 MTR_8g023240 22.199 482 296 17 4 435 31 483 3.28e-20 93.6
MS.gene055183.t1 MTR_2g067310 35.294 187 77 5 11 193 44 190 1.84e-16 79.0
MS.gene055183.t1 MTR_8g445860 26.407 231 148 7 218 434 9 231 5.83e-16 77.4
MS.gene055183.t1 MTR_8g445860 30.052 193 119 6 11 194 14 199 8.87e-16 77.0
MS.gene055183.t1 MTR_7g066390 53.947 76 32 1 362 437 46 118 2.10e-15 73.9
MS.gene055183.t1 MTR_7g063870 60.714 56 22 0 5 60 26 81 4.65e-15 75.5
MS.gene055183.t1 MTR_7g063870 57.143 49 21 0 156 204 96 144 9.28e-12 65.5
MS.gene055183.t1 MTR_1g115440 33.023 215 110 9 1 195 1 201 9.69e-15 73.9
MS.gene055183.t1 MTR_1g115455 40.323 124 63 7 1 119 1 118 5.21e-13 68.9
MS.gene055183.t1 MTR_0150s0010 30.769 208 121 7 1 194 1 199 1.12e-12 67.8
MS.gene055183.t1 MTR_1g115450 35.088 114 64 3 11 119 8 116 6.48e-11 60.5
MS.gene055183.t1 MTR_8g445920 42.308 78 40 1 1 78 1 73 9.77e-11 59.3
MS.gene055183.t1 MTR_8g044890 42.308 78 40 1 1 78 1 73 9.77e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055183.t1 AT5G01150 28.144 501 288 16 3 447 2 486 1.56e-41 154
MS.gene055183.t1 AT5G01120 28.310 491 273 15 11 437 10 485 3.13e-40 151
MS.gene055183.t1 AT3G09140 28.210 514 279 17 1 443 1 495 1.99e-38 146
MS.gene055183.t1 AT5G01130 27.495 491 268 15 3 447 2 450 2.23e-36 139
MS.gene055183.t1 AT5G01140 26.518 494 276 14 3 447 2 457 2.82e-34 134
MS.gene055183.t1 AT3G09110 28.955 335 190 8 12 307 11 336 1.45e-32 126
MS.gene055183.t1 AT5G43240 27.419 496 275 17 11 437 10 489 4.25e-32 128
MS.gene055183.t1 AT5G43240 27.419 496 275 17 11 437 10 489 4.25e-32 128
MS.gene055183.t1 AT5G43240 27.419 496 275 17 11 437 10 489 4.25e-32 128
MS.gene055183.t1 AT3G09120 32.333 300 142 9 9 257 5 294 1.75e-30 120
MS.gene055183.t1 AT5G37320 25.714 490 289 13 11 443 10 481 2.21e-28 117
MS.gene055183.t1 AT3G09140 35.468 203 105 4 1 181 1 199 5.23e-25 108
MS.gene055183.t1 AT3G09140 28.139 231 142 9 223 443 307 523 1.88e-11 66.6

Find 94 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCCTTGTTTCTCCTTT+GGG 0.184056 7.4:+40247827 MS.gene055183:CDS
AACGGTTGAGTAAATGTAAA+AGG 0.208138 7.4:-40248252 None:intergenic
TTGGCAGTTATATTTGTTAA+AGG 0.215984 7.4:-40247290 None:intergenic
AATGAACGTTTATATTATTT+AGG 0.224596 7.4:+40248109 MS.gene055183:CDS
AAGCTTCCTTGTTTCTCCTT+TGG 0.253692 7.4:+40247826 MS.gene055183:CDS
GCATAATAGTATAGCTGATT+TGG 0.270242 7.4:+40247901 MS.gene055183:CDS
CATGATTGTTGTTCCTCAAT+TGG 0.293295 7.4:+40247961 MS.gene055183:CDS
AGGAAATCCTCAAACGATTC+AGG 0.337107 7.4:-40247270 None:intergenic
GAAGAATCTTGGCCCCTCTA+TGG 0.366680 7.4:-40247684 None:intergenic
TCCGTGACCACGTAAATTCT+TGG 0.379065 7.4:-40248196 None:intergenic
GGATCTCGATGAAGGGTGTC+TGG 0.384491 7.4:+40247111 MS.gene055183:CDS
AAGGAAGCTTAAAAGTTTGT+TGG 0.386192 7.4:-40247813 None:intergenic
TTTGTTTACTAGTAGTTTCA+AGG 0.391289 7.4:-40246924 None:intergenic
AGCTTCTTGACACTGCCTTT+AGG 0.392668 7.4:+40247004 MS.gene055183:CDS
TAAATAATATAAACGTTCAT+TGG 0.396430 7.4:-40248107 None:intergenic
AGCATCTGCAAAATCTTTCT+CGG 0.399615 7.4:-40246975 None:intergenic
CTAAATACCTGAATCGTTTG+AGG 0.400581 7.4:+40247263 MS.gene055183:CDS
TCTGCAATGGATTTGTGAAC+AGG 0.410837 7.4:+40247356 MS.gene055183:CDS
CCTCGAAAATACAATATAGA+AGG 0.415147 7.4:+40248058 MS.gene055183:CDS
AAGGAGAAGGTTGTCACTAT+TGG 0.416068 7.4:+40248298 MS.gene055183:CDS
GAAGCTTGTTATAAGAAAAT+CGG 0.424646 7.4:+40247751 MS.gene055183:CDS
AGTAAATGTAAAAGGGTGAT+TGG 0.429390 7.4:-40248244 None:intergenic
AGCATGGGGCCATTCACAAT+TGG 0.453630 7.4:+40247058 MS.gene055183:CDS
CGCTTAAATCAAAATATTGA+CGG 0.454596 7.4:-40247985 None:intergenic
TCAAAGGATTCCCGCACTCT+TGG 0.461553 7.4:-40247309 None:intergenic
TTATTAGGAGGGAGTTCATT+GGG 0.461635 7.4:+40247863 MS.gene055183:CDS
TCACTTGCTAACTGAAGTTA+AGG 0.463987 7.4:+40248520 MS.gene055183:CDS
GGGCCAAGATTCTTCTCTTG+TGG 0.466673 7.4:+40247692 MS.gene055183:CDS
GCAGTGTCTCAGCATATTGA+AGG 0.476267 7.4:+40248457 MS.gene055183:intron
TTTATTAGGAGGGAGTTCAT+TGG 0.477160 7.4:+40247862 MS.gene055183:CDS
AAACCACAAGAGAAGAATCT+TGG 0.480544 7.4:-40247695 None:intergenic
ATCATAACTGAATGGTTCAA+AGG 0.485105 7.4:-40247325 None:intergenic
AAATACAATATAGAAGGTAT+TGG 0.488924 7.4:+40248064 MS.gene055183:CDS
TTCAGCAAACAAGACTTTGT+TGG 0.490750 7.4:-40246951 None:intergenic
GCTTCCTTGTTTCTCCTTTG+GGG 0.491865 7.4:+40247828 MS.gene055183:CDS
TAACAAGCTTCACAGTGACT+TGG 0.494624 7.4:-40247739 None:intergenic
ATGAAGGGTGTCTGGGAACA+TGG 0.498798 7.4:+40247119 MS.gene055183:CDS
TATCAATCACCGACACTGAC+TGG 0.500376 7.4:+40248151 MS.gene055183:CDS
GGCTACGAACGCTTTGTCAT+GGG 0.504848 7.4:+40248172 MS.gene055183:CDS
AAATATTGACGGGCCAATTG+AGG 0.505994 7.4:-40247974 None:intergenic
CTTCCTTGTTTCTCCTTTGG+GGG 0.513430 7.4:+40247829 MS.gene055183:CDS
AACAAATTATTGTATGTGCA+AGG 0.513664 7.4:+40247776 MS.gene055183:CDS
TGGCTACGAACGCTTTGTCA+TGG 0.515142 7.4:+40248171 MS.gene055183:CDS
TTCCTTGTTTCTCCTTTGGG+GGG 0.515635 7.4:+40247830 MS.gene055183:CDS
TGCGTGGAGGATCTCGATGA+AGG 0.516149 7.4:+40247103 MS.gene055183:CDS
CAAATTATTGTATGTGCAAG+GGG 0.524177 7.4:+40247778 MS.gene055183:CDS
TAATCTTCTGATGAGTTAGC+TGG 0.527130 7.4:-40247166 None:intergenic
ACGGTTGAGTAAATGTAAAA+GGG 0.528785 7.4:-40248251 None:intergenic
GACCGAAAACCATCCATAGA+GGG 0.531199 7.4:+40247671 MS.gene055183:CDS
AGAAAAGTTCGTAATATCCA+TGG 0.533127 7.4:-40247425 None:intergenic
GGTGTCTGGGAACATGGATA+AGG 0.533279 7.4:+40247125 MS.gene055183:CDS
AACTTCTGTTGACGATCTGA+AGG 0.539244 7.4:+40248279 MS.gene055183:CDS
AATATAACTGCCAAGAGTGC+GGG 0.540835 7.4:+40247299 MS.gene055183:CDS
TCAACATCTGCTCTATCAAA+CGG 0.543468 7.4:+40248491 MS.gene055183:CDS
TTCAGACAACCAATTGTGAA+TGG 0.545287 7.4:-40247067 None:intergenic
GACTGTCATGCAAAACTCCA+TGG 0.546370 7.4:+40247408 MS.gene055183:CDS
ACAAATTATTGTATGTGCAA+GGG 0.546473 7.4:+40247777 MS.gene055183:CDS
AGACCGAAAACCATCCATAG+AGG 0.546859 7.4:+40247670 MS.gene055183:CDS
GGAATTGTACGTTTATTAGG+AGG 0.546902 7.4:+40247851 MS.gene055183:CDS
AAGGAGGAGATATGTGAATG+AGG 0.550943 7.4:+40248539 MS.gene055183:CDS
CGATTCAGGTATTTAGAGCA+AGG 0.553030 7.4:-40247256 None:intergenic
TGTTGACGATCTGAAGGAGA+AGG 0.554611 7.4:+40248285 MS.gene055183:CDS
AATCTTGGCCCCTCTATGGA+TGG 0.554927 7.4:-40247680 None:intergenic
GATCTCGATGAAGGGTGTCT+GGG 0.555440 7.4:+40247112 MS.gene055183:CDS
GCTTAAATCAAAATATTGAC+GGG 0.557539 7.4:-40247984 None:intergenic
GCAGAGAAAGAGTCAAGCAT+GGG 0.559861 7.4:+40247043 MS.gene055183:CDS
TTACGTGGTCACGGATGACC+TGG 0.562305 7.4:+40248204 MS.gene055183:CDS
CGTCAACAGAAGTTTCAAAA+CGG 0.562417 7.4:-40248270 None:intergenic
GAATTGTACGTTTATTAGGA+GGG 0.586316 7.4:+40247852 MS.gene055183:CDS
AGTCTTGCAATAGTTCCTAA+AGG 0.586436 7.4:-40247019 None:intergenic
TGCTCCTACTAAAACAGAGG+AGG 0.591424 7.4:+40246895 MS.gene055183:CDS
ACCAAGAATTTACGTGGTCA+CGG 0.595998 7.4:+40248195 MS.gene055183:CDS
AAATATAACTGCCAAGAGTG+CGG 0.597419 7.4:+40247298 MS.gene055183:CDS
CTTGCTAACTGAAGTTAAGG+AGG 0.601679 7.4:+40248523 MS.gene055183:CDS
GCGTGGAGGATCTCGATGAA+GGG 0.602362 7.4:+40247104 MS.gene055183:CDS
TGCAGAGAAAGAGTCAAGCA+TGG 0.607012 7.4:+40247042 MS.gene055183:CDS
AAAAGGGTGATTGGAGACAA+AGG 0.609586 7.4:-40248235 None:intergenic
CTGCAATGGATTTGTGAACA+GGG 0.611920 7.4:+40247357 MS.gene055183:CDS
GAGACAAAGGTGAAATGACC+AGG 0.612367 7.4:-40248222 None:intergenic
GGCTGCTCCTACTAAAACAG+AGG 0.616934 7.4:+40246892 MS.gene055183:CDS
GTGCATAAGAAGTACTCTGT+GGG 0.618082 7.4:-40247226 None:intergenic
CATGGGACCAAGAATTTACG+TGG 0.621275 7.4:+40248189 MS.gene055183:CDS
AATTGTCAGTTAGAAGACAT+CGG 0.634976 7.4:+40248014 MS.gene055183:CDS
CGTTCGTAGCCAGTCAGTGT+CGG 0.646843 7.4:-40248160 None:intergenic
GCTCCTACTAAAACAGAGGA+GGG 0.647098 7.4:+40246896 MS.gene055183:CDS
GAACTCACTCTATCATTGCG+TGG 0.647546 7.4:+40247087 MS.gene055183:CDS
TCTGGGAACATGGATAAGGA+AGG 0.652587 7.4:+40247129 MS.gene055183:CDS
ACCGAAAACCATCCATAGAG+GGG 0.672987 7.4:+40247672 MS.gene055183:CDS
GTGTCTCAGCATATTGAAGG+CGG 0.679953 7.4:+40248460 MS.gene055183:intron
TGTCACTATTGGCATCAAAG+AGG 0.683718 7.4:+40248309 MS.gene055183:CDS
AGTGCATAAGAAGTACTCTG+TGG 0.683866 7.4:-40247227 None:intergenic
TGCAATGGATTTGTGAACAG+GGG 0.689944 7.4:+40247358 MS.gene055183:CDS
CTCACTCTATCATTGCGTGG+AGG 0.709021 7.4:+40247090 MS.gene055183:CDS
CAGAGAAAGAGTCAAGCATG+GGG 0.718580 7.4:+40247044 MS.gene055183:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAACGTTTATATTATTT+AGG + chr7.4:40248109-40248128 MS.gene055183:CDS 15.0%
!! TAAATAATATAAACGTTCAT+TGG - chr7.4:40248110-40248129 None:intergenic 15.0%
!!! AAATACAATATAGAAGGTAT+TGG + chr7.4:40248064-40248083 MS.gene055183:CDS 20.0%
!!! ATTTTTTCATCATAACTGAA+TGG - chr7.4:40247336-40247355 None:intergenic 20.0%
!!! TATTTCAATTTCTTGTTTTC+TGG + chr7.4:40247509-40247528 MS.gene055183:intron 20.0%
!!! TGATTTTGAATGTTTTGTTT+CGG + chr7.4:40247925-40247944 MS.gene055183:CDS 20.0%
!!! TTAAATGACTTGTATTTTAC+AGG + chr7.4:40247577-40247596 MS.gene055183:intron 20.0%
! AACAAATTATTGTATGTGCA+AGG + chr7.4:40247776-40247795 MS.gene055183:CDS 25.0%
! ACAAATTATTGTATGTGCAA+GGG + chr7.4:40247777-40247796 MS.gene055183:CDS 25.0%
! ATGATGAAAAAATTCTGCAA+TGG + chr7.4:40247343-40247362 MS.gene055183:CDS 25.0%
! ATGTTTGGTTGTTTAGTAAT+AGG + chr7.4:40247536-40247555 MS.gene055183:intron 25.0%
! CGCTTAAATCAAAATATTGA+CGG - chr7.4:40247988-40248007 None:intergenic 25.0%
! GCTTAAATCAAAATATTGAC+GGG - chr7.4:40247987-40248006 None:intergenic 25.0%
! TTTGTTTACTAGTAGTTTCA+AGG - chr7.4:40246927-40246946 None:intergenic 25.0%
!! TAAGAGGTAATATAGCTTTA+TGG - chr7.4:40248342-40248361 None:intergenic 25.0%
!! TTGGCAGTTATATTTGTTAA+AGG - chr7.4:40247293-40247312 None:intergenic 25.0%
!!! GAAGCTTGTTATAAGAAAAT+CGG + chr7.4:40247751-40247770 MS.gene055183:CDS 25.0%
!!! TCAATATTTTGATTTAAGCG+AGG + chr7.4:40247988-40248007 MS.gene055183:CDS 25.0%
AACGGTTGAGTAAATGTAAA+AGG - chr7.4:40248255-40248274 None:intergenic 30.0%
AAGGAAGCTTAAAAGTTTGT+TGG - chr7.4:40247816-40247835 None:intergenic 30.0%
AATTGTCAGTTAGAAGACAT+CGG + chr7.4:40248014-40248033 MS.gene055183:CDS 30.0%
ACGGTTGAGTAAATGTAAAA+GGG - chr7.4:40248254-40248273 None:intergenic 30.0%
AGAAAAGTTCGTAATATCCA+TGG - chr7.4:40247428-40247447 None:intergenic 30.0%
AGTAAATGTAAAAGGGTGAT+TGG - chr7.4:40248247-40248266 None:intergenic 30.0%
ATCATAACTGAATGGTTCAA+AGG - chr7.4:40247328-40247347 None:intergenic 30.0%
CAAATTATTGTATGTGCAAG+GGG + chr7.4:40247778-40247797 MS.gene055183:CDS 30.0%
CACAAAAGCAGAAAAATAAG+AGG - chr7.4:40248358-40248377 None:intergenic 30.0%
CCTCGAAAATACAATATAGA+AGG + chr7.4:40248058-40248077 MS.gene055183:CDS 30.0%
GAATTGTACGTTTATTAGGA+GGG + chr7.4:40247852-40247871 MS.gene055183:CDS 30.0%
GCATAATAGTATAGCTGATT+TGG + chr7.4:40247901-40247920 MS.gene055183:CDS 30.0%
GGTTGTTTAGTAATAGGTAT+TGG + chr7.4:40247542-40247561 MS.gene055183:intron 30.0%
! CCTTCTATATTGTATTTTCG+AGG - chr7.4:40248061-40248080 None:intergenic 30.0%
! GACTTGTATTTTACAGGTAT+TGG + chr7.4:40247583-40247602 MS.gene055183:intron 30.0%
! GGGTGCAACTTTTATTATTA+AGG + chr7.4:40247378-40247397 MS.gene055183:CDS 30.0%
! GTTTAATGTTAGACTGACTT+AGG + chr7.4:40248391-40248410 MS.gene055183:intron 30.0%
!!! ACTGACAGATTTGTTTTTAG+GGG + chr7.4:40247640-40247659 MS.gene055183:intron 30.0%
!!! CACTGACAGATTTGTTTTTA+GGG + chr7.4:40247639-40247658 MS.gene055183:intron 30.0%
!!! TTGTTTTCTGGCTAAATGTT+TGG + chr7.4:40247521-40247540 MS.gene055183:intron 30.0%
AAACCACAAGAGAAGAATCT+TGG - chr7.4:40247698-40247717 None:intergenic 35.0%
AAATATAACTGCCAAGAGTG+CGG + chr7.4:40247298-40247317 MS.gene055183:CDS 35.0%
AGCATCTGCAAAATCTTTCT+CGG - chr7.4:40246978-40246997 None:intergenic 35.0%
AGTCTTGCAATAGTTCCTAA+AGG - chr7.4:40247022-40247041 None:intergenic 35.0%
CCTAAAAACAAATCTGTCAG+TGG - chr7.4:40247641-40247660 None:intergenic 35.0%
CGTCAACAGAAGTTTCAAAA+CGG - chr7.4:40248273-40248292 None:intergenic 35.0%
CTAAATACCTGAATCGTTTG+AGG + chr7.4:40247263-40247282 MS.gene055183:CDS 35.0%
GGAATTGTACGTTTATTAGG+AGG + chr7.4:40247851-40247870 MS.gene055183:CDS 35.0%
TAATCTTCTGATGAGTTAGC+TGG - chr7.4:40247169-40247188 None:intergenic 35.0%
TCAACATCTGCTCTATCAAA+CGG + chr7.4:40248491-40248510 MS.gene055183:CDS 35.0%
TCTGACTGTCACTAAAGAAA+AGG + chr7.4:40247481-40247500 MS.gene055183:intron 35.0%
TTATTAGGAGGGAGTTCATT+GGG + chr7.4:40247863-40247882 MS.gene055183:CDS 35.0%
TTCAGACAACCAATTGTGAA+TGG - chr7.4:40247070-40247089 None:intergenic 35.0%
TTCAGCAAACAAGACTTTGT+TGG - chr7.4:40246954-40246973 None:intergenic 35.0%
TTTATTAGGAGGGAGTTCAT+TGG + chr7.4:40247862-40247881 MS.gene055183:CDS 35.0%
! CATGATTGTTGTTCCTCAAT+TGG + chr7.4:40247961-40247980 MS.gene055183:CDS 35.0%
! TCACTTGCTAACTGAAGTTA+AGG + chr7.4:40248520-40248539 MS.gene055183:CDS 35.0%
! TTTTCTCTGCTACAGAACTT+AGG + chr7.4:40247442-40247461 MS.gene055183:CDS 35.0%
!! CCACTGACAGATTTGTTTTT+AGG + chr7.4:40247638-40247657 MS.gene055183:intron 35.0%
!! TTTTGTTTCGGAAGAAGCAA+GGG + chr7.4:40247937-40247956 MS.gene055183:CDS 35.0%
AAAAGGGTGATTGGAGACAA+AGG - chr7.4:40248238-40248257 None:intergenic 40.0%
AACTTCTGTTGACGATCTGA+AGG + chr7.4:40248279-40248298 MS.gene055183:CDS 40.0%
AAGGAGAAGGTTGTCACTAT+TGG + chr7.4:40248298-40248317 MS.gene055183:CDS 40.0%
ACCAAGAATTTACGTGGTCA+CGG + chr7.4:40248195-40248214 MS.gene055183:CDS 40.0%
AGGAAATCCTCAAACGATTC+AGG - chr7.4:40247273-40247292 None:intergenic 40.0%
CTTGCTAACTGAAGTTAAGG+AGG + chr7.4:40248523-40248542 MS.gene055183:CDS 40.0%
GGGGGAATTGTACGTTTATT+AGG + chr7.4:40247848-40247867 MS.gene055183:CDS 40.0%
TAACAAGCTTCACAGTGACT+TGG - chr7.4:40247742-40247761 None:intergenic 40.0%
TGTCACTATTGGCATCAAAG+AGG + chr7.4:40248309-40248328 MS.gene055183:CDS 40.0%
! AAATATTGACGGGCCAATTG+AGG - chr7.4:40247977-40247996 None:intergenic 40.0%
! AAGCTTCCTTGTTTCTCCTT+TGG + chr7.4:40247826-40247845 MS.gene055183:CDS 40.0%
! AATATAACTGCCAAGAGTGC+GGG + chr7.4:40247299-40247318 MS.gene055183:CDS 40.0%
! AGCTTCCTTGTTTCTCCTTT+GGG + chr7.4:40247827-40247846 MS.gene055183:CDS 40.0%
! CGATTCAGGTATTTAGAGCA+AGG - chr7.4:40247259-40247278 None:intergenic 40.0%
! CTGCAATGGATTTGTGAACA+GGG + chr7.4:40247357-40247376 MS.gene055183:CDS 40.0%
! TCTGCAATGGATTTGTGAAC+AGG + chr7.4:40247356-40247375 MS.gene055183:CDS 40.0%
! TGCAATGGATTTGTGAACAG+GGG + chr7.4:40247358-40247377 MS.gene055183:CDS 40.0%
!! AGTGCATAAGAAGTACTCTG+TGG - chr7.4:40247230-40247249 None:intergenic 40.0%
!! GTGCATAAGAAGTACTCTGT+GGG - chr7.4:40247229-40247248 None:intergenic 40.0%
!!! GTTTTGTTTCGGAAGAAGCA+AGG + chr7.4:40247936-40247955 MS.gene055183:CDS 40.0%
AAACGTACAATTCCCCCCAA+AGG - chr7.4:40247845-40247864 None:intergenic 45.0%
ACCGAAAACCATCCATAGAG+GGG + chr7.4:40247672-40247691 MS.gene055183:CDS 45.0%
AGACCGAAAACCATCCATAG+AGG + chr7.4:40247670-40247689 MS.gene055183:CDS 45.0%
AGCTTCTTGACACTGCCTTT+AGG + chr7.4:40247004-40247023 MS.gene055183:CDS 45.0%
CAGAGAAAGAGTCAAGCATG+GGG + chr7.4:40247044-40247063 MS.gene055183:CDS 45.0%
CATGGGACCAAGAATTTACG+TGG + chr7.4:40248189-40248208 MS.gene055183:CDS 45.0%
GAACTCACTCTATCATTGCG+TGG + chr7.4:40247087-40247106 MS.gene055183:CDS 45.0%
GACCGAAAACCATCCATAGA+GGG + chr7.4:40247671-40247690 MS.gene055183:CDS 45.0%
GACTGTCATGCAAAACTCCA+TGG + chr7.4:40247408-40247427 MS.gene055183:CDS 45.0%
GAGACAAAGGTGAAATGACC+AGG - chr7.4:40248225-40248244 None:intergenic 45.0%
GCAGAGAAAGAGTCAAGCAT+GGG + chr7.4:40247043-40247062 MS.gene055183:CDS 45.0%
GCAGTGTCTCAGCATATTGA+AGG + chr7.4:40248457-40248476 MS.gene055183:intron 45.0%
GCTCCTACTAAAACAGAGGA+GGG + chr7.4:40246896-40246915 MS.gene055183:CDS 45.0%
GTGTCTCAGCATATTGAAGG+CGG + chr7.4:40248460-40248479 MS.gene055183:intron 45.0%
TATCAATCACCGACACTGAC+TGG + chr7.4:40248151-40248170 MS.gene055183:CDS 45.0%
TCCGTGACCACGTAAATTCT+TGG - chr7.4:40248199-40248218 None:intergenic 45.0%
TCTGGGAACATGGATAAGGA+AGG + chr7.4:40247129-40247148 MS.gene055183:CDS 45.0%
TGCAGAGAAAGAGTCAAGCA+TGG + chr7.4:40247042-40247061 MS.gene055183:CDS 45.0%
TGCTCCTACTAAAACAGAGG+AGG + chr7.4:40246895-40246914 MS.gene055183:CDS 45.0%
TGTTGACGATCTGAAGGAGA+AGG + chr7.4:40248285-40248304 MS.gene055183:CDS 45.0%
! CTTCCTTGTTTCTCCTTTGG+GGG + chr7.4:40247829-40247848 MS.gene055183:CDS 45.0%
! GCTTCCTTGTTTCTCCTTTG+GGG + chr7.4:40247828-40247847 MS.gene055183:CDS 45.0%
! TTCCTTGTTTCTCCTTTGGG+GGG + chr7.4:40247830-40247849 MS.gene055183:CDS 45.0%
!!! ACTCCCTCCTCTGTTTTAGT+AGG - chr7.4:40246902-40246921 None:intergenic 45.0%
AATCTTGGCCCCTCTATGGA+TGG - chr7.4:40247683-40247702 None:intergenic 50.0%
AGCATGGGGCCATTCACAAT+TGG + chr7.4:40247058-40247077 MS.gene055183:CDS 50.0%
CTCACTCTATCATTGCGTGG+AGG + chr7.4:40247090-40247109 MS.gene055183:CDS 50.0%
GAAGAATCTTGGCCCCTCTA+TGG - chr7.4:40247687-40247706 None:intergenic 50.0%
GGCTACGAACGCTTTGTCAT+GGG + chr7.4:40248172-40248191 MS.gene055183:CDS 50.0%
GGCTGCTCCTACTAAAACAG+AGG + chr7.4:40246892-40246911 MS.gene055183:CDS 50.0%
GGGCCAAGATTCTTCTCTTG+TGG + chr7.4:40247692-40247711 MS.gene055183:CDS 50.0%
GGTGTCTGGGAACATGGATA+AGG + chr7.4:40247125-40247144 MS.gene055183:CDS 50.0%
TCAAAGGATTCCCGCACTCT+TGG - chr7.4:40247312-40247331 None:intergenic 50.0%
TGGCTACGAACGCTTTGTCA+TGG + chr7.4:40248171-40248190 MS.gene055183:CDS 50.0%
TTCCCCCCAAAGGAGAAACA+AGG - chr7.4:40247835-40247854 None:intergenic 50.0%
! GCCCCTCTATGGATGGTTTT+CGG - chr7.4:40247676-40247695 None:intergenic 50.0%
!! ATGAAGGGTGTCTGGGAACA+TGG + chr7.4:40247119-40247138 MS.gene055183:CDS 50.0%
!! GATCTCGATGAAGGGTGTCT+GGG + chr7.4:40247112-40247131 MS.gene055183:CDS 50.0%
CGTTCGTAGCCAGTCAGTGT+CGG - chr7.4:40248163-40248182 None:intergenic 55.0%
GCGTGGAGGATCTCGATGAA+GGG + chr7.4:40247104-40247123 MS.gene055183:CDS 55.0%
TGCGTGGAGGATCTCGATGA+AGG + chr7.4:40247103-40247122 MS.gene055183:CDS 55.0%
TTACGTGGTCACGGATGACC+TGG + chr7.4:40248204-40248223 MS.gene055183:CDS 55.0%
!! GGATCTCGATGAAGGGTGTC+TGG + chr7.4:40247111-40247130 MS.gene055183:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40246890 40248559 40246890 ID=MS.gene055183
chr7.4 mRNA 40246890 40248559 40246890 ID=MS.gene055183.t1;Parent=MS.gene055183
chr7.4 exon 40246890 40247472 40246890 ID=MS.gene055183.t1.exon1;Parent=MS.gene055183.t1
chr7.4 CDS 40246890 40247472 40246890 ID=cds.MS.gene055183.t1;Parent=MS.gene055183.t1
chr7.4 exon 40247660 40248330 40247660 ID=MS.gene055183.t1.exon2;Parent=MS.gene055183.t1
chr7.4 CDS 40247660 40248330 40247660 ID=cds.MS.gene055183.t1;Parent=MS.gene055183.t1
chr7.4 exon 40248461 40248559 40248461 ID=MS.gene055183.t1.exon3;Parent=MS.gene055183.t1
chr7.4 CDS 40248461 40248559 40248461 ID=cds.MS.gene055183.t1;Parent=MS.gene055183.t1
Gene Sequence

>MS.gene055183

ATGGCTGCTCCTACTAAAACAGAGGAGGGAGTGACCTTGAAACTACTAGTAAACAAAGACACCAACAAAGTCTTGTTTGCTGAAGCCGAGAAAGATTTTGCAGATGCTCTCTTTAGCTTCTTGACACTGCCTTTAGGAACTATTGCAAGACTTGCAGAGAAAGAGTCAAGCATGGGGCCATTCACAATTGGTTGTCTGAACTCACTCTATCATTGCGTGGAGGATCTCGATGAAGGGTGTCTGGGAACATGGATAAGGAAGGAAATGCTGTTGCAGCCAGCTAACTCATCAGAAGATTATTGTAGCAGTCTTAAACTTAATATTGATGACACTGAGCCCACAGAGTACTTCTTATGCACTACGTTTCCTTGCTCTAAATACCTGAATCGTTTGAGGATTTCCTTTAACAAATATAACTGCCAAGAGTGCGGGAATCCTTTGAACCATTCAGTTATGATGAAAAAATTCTGCAATGGATTTGTGAACAGGGGTGCAACTTTTATTATTAAGGATGATTTGACTGTCATGCAAAACTCCATGGATATTACGAACTTTTCTCTGCTACAGAACTTAGGAATAAAACGTGCAAGTTCTGACTGTCACTAAAGAAAAGGTTTTATATTTCAATTTCTTGTTTTCTGGCTAAATGTTTGGTTGTTTAGTAATAGGTATTGGATCAATTCGTTTTTAAATGACTTGTATTTTACAGGTATTGGATTTACTAAAATGTTCTTTGTTATCAAAGACACCACTGACAGATTTGTTTTTAGGGGAAAATAAAGACCGAAAACCATCCATAGAGGGGCCAAGATTCTTCTCTTGTGGTTTTGAGAACAATAGTGATAGAATCCAAGTCACTGTGAAGCTTGTTATAAGAAAATCGGACAACAAATTATTGTATGTGCAAGGGGATTATGATTTTGCCAACAAACTTTTAAGCTTCCTTGTTTCTCCTTTGGGGGGAATTGTACGTTTATTAGGAGGGAGTTCATTGGGAAGCATTGATGCTTTGCATAATAGTATAGCTGATTTGGATGATTTTGAATGTTTTGTTTCGGAAGAAGCAAGGGACATGATTGTTGTTCCTCAATTGGCCCGTCAATATTTTGATTTAAGCGAGGAAAAATTGTCAGTTAGAAGACATCGGAGTTATTACTGTTATTATGAACCTCGAAAATACAATATAGAAGGTATTGGTCACAATCAAGTTTTCATTACCAATGAACGTTTATATTATTTAGGAAATTGTTGTGAATTGTATTATCAATCACCGACACTGACTGGCTACGAACGCTTTGTCATGGGACCAAGAATTTACGTGGTCACGGATGACCTGGTCATTTCACCTTTGTCTCCAATCACCCTTTTACATTTACTCAACCGTTTTGAAACTTCTGTTGACGATCTGAAGGAGAAGGTTGTCACTATTGGCATCAAAGAGGTAATAGACCATAAAGCTATATTACCTCTTATTTTTCTGCTTTTGTGTTTGAACTTCGAAGTTTAATGTTAGACTGACTTAGGAAGTATTTTATAGCAAATGTTCACTTTAGCTTGTTTTCATTTTGCAGTGTCTCAGCATATTGAAGGCGGCTTTAACATCAACATCTGCTCTATCAAACGGTCTTGCTCACTTGCTAACTGAAGTTAAGGAGGAGATATGTGAATGA
Protein sequence

>MS.gene055183.t1

MAAPTKTEEGVTLKLLVNKDTNKVLFAEAEKDFADALFSFLTLPLGTIARLAEKESSMGPFTIGCLNSLYHCVEDLDEGCLGTWIRKEMLLQPANSSEDYCSSLKLNIDDTEPTEYFLCTTFPCSKYLNRLRISFNKYNCQECGNPLNHSVMMKKFCNGFVNRGATFIIKDDLTVMQNSMDITNFSLLQNLGIKRENKDRKPSIEGPRFFSCGFENNSDRIQVTVKLVIRKSDNKLLYVQGDYDFANKLLSFLVSPLGGIVRLLGGSSLGSIDALHNSIADLDDFECFVSEEARDMIVVPQLARQYFDLSEEKLSVRRHRSYYCYYEPRKYNIEGIGHNQVFITNERLYYLGNCCELYYQSPTLTGYERFVMGPRIYVVTDDLVISPLSPITLLHLLNRFETSVDDLKEKVVTIGIKECLSILKAALTSTSALSNGLAHLLTEVKEEICE