AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89292.t1 MTR_7g063900 58.796 432 158 9 3 419 2 428 2.48e-170 487
MS.gene89292.t1 MTR_7g063840 58.513 417 159 10 7 418 5 412 1.47e-157 454
MS.gene89292.t1 MTR_7g063880 59.112 428 148 12 1 420 1 409 1.46e-155 449
MS.gene89292.t1 MTR_7g063880 27.434 226 141 7 11 228 246 456 9.45e-12 67.0
MS.gene89292.t1 MTR_7g062280 54.920 437 172 7 3 420 2 432 2.08e-155 449
MS.gene89292.t1 MTR_7g063830 58.477 407 154 7 3 400 2 402 2.66e-154 444
MS.gene89292.t1 MTR_7g063820 55.329 441 154 7 3 419 2 423 3.83e-154 446
MS.gene89292.t1 MTR_7g063820 29.870 231 137 9 11 228 254 472 8.92e-12 67.4
MS.gene89292.t1 MTR_7g063890 58.019 424 161 8 8 418 24 443 1.80e-149 434
MS.gene89292.t1 MTR_7g062300 54.588 425 183 6 1 420 1 420 3.12e-148 430
MS.gene89292.t1 MTR_7g063660 54.502 422 176 7 6 419 4 417 2.13e-147 428
MS.gene89292.t1 MTR_7g063660 28.326 233 133 9 11 227 250 464 4.42e-15 77.4
MS.gene89292.t1 MTR_7g063920 52.619 420 156 3 1 420 1 377 1.89e-142 414
MS.gene89292.t1 MTR_3g007740 49.409 423 166 9 7 420 5 388 1.41e-121 361
MS.gene89292.t1 MTR_7g063670 47.073 427 169 9 9 420 13 397 1.11e-104 318
MS.gene89292.t1 MTR_3g065200 43.961 414 178 10 11 419 3 367 2.17e-98 302
MS.gene89292.t1 MTR_7g066570 42.411 448 211 12 1 421 1 428 1.76e-97 303
MS.gene89292.t1 MTR_7g066260 41.725 429 209 10 5 420 9 409 2.53e-93 290
MS.gene89292.t1 MTR_7g066430 40.278 432 231 7 11 419 4 431 1.59e-91 286
MS.gene89292.t1 MTR_7g066430 27.273 231 149 7 10 228 256 479 6.75e-15 77.0
MS.gene89292.t1 MTR_7g058710 37.868 441 233 12 2 420 3 424 4.30e-87 274
MS.gene89292.t1 MTR_7g066410 39.440 464 230 13 1 419 1 458 1.74e-86 273
MS.gene89292.t1 MTR_7g066410 31.760 233 138 7 9 228 282 506 1.88e-19 90.9
MS.gene89292.t1 MTR_7g066350 38.955 421 213 9 10 419 8 395 2.44e-85 268
MS.gene89292.t1 MTR_7g066340 39.907 431 212 12 4 421 5 401 7.41e-85 268
MS.gene89292.t1 MTR_7g066480 47.678 323 155 4 11 324 16 333 1.42e-83 263
MS.gene89292.t1 MTR_7g012680 39.862 434 201 11 1 418 1 390 3.59e-83 263
MS.gene89292.t1 MTR_7g066490 47.040 321 146 5 11 324 16 319 5.29e-81 256
MS.gene89292.t1 MTR_1g041315 36.504 452 219 11 1 421 1 415 1.23e-79 255
MS.gene89292.t1 MTR_7g066290 41.758 364 191 7 1 350 5 361 2.82e-78 249
MS.gene89292.t1 MTR_7g066580 39.720 428 198 13 17 420 1 392 4.31e-78 249
MS.gene89292.t1 MTR_7g066580 29.832 238 140 10 10 230 214 441 3.93e-14 74.3
MS.gene89292.t1 MTR_7g066400 35.455 440 212 11 1 422 1 386 1.30e-74 240
MS.gene89292.t1 MTR_7g066360 39.770 435 208 12 1 420 1 396 2.57e-74 241
MS.gene89292.t1 MTR_2g029400 35.335 433 193 12 2 421 5 363 7.32e-64 211
MS.gene89292.t1 MTR_7g058700 34.123 422 170 10 23 420 531 868 1.11e-62 218
MS.gene89292.t1 MTR_7g062270 54.348 184 83 1 4 186 2 185 2.24e-60 201
MS.gene89292.t1 MTR_7g062270 27.168 173 106 8 258 419 14 177 3.69e-11 65.1
MS.gene89292.t1 MTR_4g019310 32.667 450 256 13 5 421 2 437 8.09e-60 203
MS.gene89292.t1 MTR_7g066310 33.898 413 185 11 10 421 6 331 4.97e-59 199
MS.gene89292.t1 MTR_7g063690 44.014 284 94 6 1 281 1 222 1.03e-56 187
MS.gene89292.t1 MTR_1g014060 46.009 213 105 6 12 219 1 208 6.36e-51 177
MS.gene89292.t1 MTR_1g014060 35.032 157 73 8 273 421 197 332 9.31e-12 66.6
MS.gene89292.t1 MTR_7g063720 50.811 185 74 5 234 417 2 170 7.81e-50 169
MS.gene89292.t1 MTR_7g063720 29.412 221 130 6 11 228 23 220 6.65e-18 83.2
MS.gene89292.t1 MTR_4g019340 32.658 444 248 16 9 420 36 460 9.21e-50 176
MS.gene89292.t1 MTR_4g017830 30.283 459 272 14 1 421 1 449 3.79e-49 175
MS.gene89292.t1 MTR_4g017830 30.802 237 135 9 11 227 267 494 3.59e-16 80.9
MS.gene89292.t1 MTR_4g017410 35.015 337 184 10 4 312 2 331 6.69e-48 171
MS.gene89292.t1 MTR_4g017470 29.654 462 236 16 1 419 1 416 3.18e-45 164
MS.gene89292.t1 MTR_4g017610 29.241 448 264 17 5 421 2 427 2.81e-44 161
MS.gene89292.t1 MTR_7g063850 42.623 244 121 8 181 420 1 229 1.16e-43 155
MS.gene89292.t1 MTR_4g017440 29.126 412 252 13 1 386 1 398 1.60e-42 157
MS.gene89292.t1 MTR_7g100420 36.630 273 155 6 152 419 84 343 1.21e-41 152
MS.gene89292.t1 MTR_7g100420 67.925 53 17 0 2 54 30 82 1.38e-15 78.6
MS.gene89292.t1 MTR_8g023240 28.707 317 200 8 8 315 34 333 6.47e-38 145
MS.gene89292.t1 MTR_7g066280 31.856 361 194 14 90 421 1 338 4.47e-33 129
MS.gene89292.t1 MTR_7g066280 25.203 246 153 8 7 228 146 384 3.48e-13 71.2
MS.gene89292.t1 MTR_7g066680 36.607 224 120 5 211 419 37 253 1.78e-31 123
MS.gene89292.t1 MTR_7g066680 29.167 216 137 8 5 213 80 286 1.90e-17 83.6
MS.gene89292.t1 MTR_1g115440 34.137 249 137 9 1 233 1 238 1.21e-30 118
MS.gene89292.t1 MTR_4g017550 25.313 399 263 10 38 416 18 401 2.71e-27 114
MS.gene89292.t1 MTR_4g017550 31.276 243 128 9 11 232 247 471 7.81e-15 76.6
MS.gene89292.t1 MTR_8g445860 31.579 247 141 7 1 234 7 238 2.33e-26 107
MS.gene89292.t1 MTR_0150s0010 30.769 247 144 7 3 233 2 237 3.99e-24 100
MS.gene89292.t1 MTR_2g067310 34.884 172 72 5 23 194 59 190 2.78e-18 84.3
MS.gene89292.t1 MTR_1g115455 28.279 244 154 7 1 234 1 233 1.09e-17 82.4
MS.gene89292.t1 MTR_7g063870 66.667 57 19 0 5 61 25 81 4.24e-17 81.3
MS.gene89292.t1 MTR_7g063870 54.286 70 30 1 157 224 96 165 7.75e-16 77.4
MS.gene89292.t1 MTR_1g115450 39.796 98 50 2 1 98 1 89 3.52e-15 72.8
MS.gene89292.t1 MTR_8g445920 39.080 87 48 1 3 89 2 83 4.54e-13 65.9
MS.gene89292.t1 MTR_8g044890 39.080 87 48 1 3 89 2 83 4.54e-13 65.9
MS.gene89292.t1 MTR_1g115470 38.679 106 59 2 11 115 6 106 8.66e-13 70.1
MS.gene89292.t1 MTR_0150s0030 36.264 91 52 2 5 94 2 87 4.24e-12 65.5
MS.gene89292.t1 MTR_4g019240 36.585 123 66 4 1 113 1 121 9.88e-12 63.9
MS.gene89292.t1 MTR_8g445910 37.363 91 51 2 5 94 2 87 1.06e-11 65.5
MS.gene89292.t1 MTR_8g044880 37.363 91 51 2 5 94 2 87 1.34e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89292.t1 AT3G09110 36.538 312 189 4 11 315 9 318 4.11e-57 192
MS.gene89292.t1 AT5G01120 33.030 439 250 13 12 419 10 435 2.67e-55 191
MS.gene89292.t1 AT5G01120 25.957 235 147 9 6 227 262 482 4.11e-12 68.6
MS.gene89292.t1 AT3G09140 36.103 349 185 8 1 318 1 342 2.68e-53 186
MS.gene89292.t1 AT3G09120 37.224 317 173 7 10 308 5 313 1.11e-52 179
MS.gene89292.t1 AT5G01150 31.579 437 253 12 9 418 7 424 4.15e-51 180
MS.gene89292.t1 AT5G43240 33.483 445 246 16 12 420 10 440 9.75e-51 179
MS.gene89292.t1 AT5G43240 33.483 445 246 16 12 420 10 440 9.75e-51 179
MS.gene89292.t1 AT5G43240 33.483 445 246 16 12 420 10 440 9.75e-51 179
MS.gene89292.t1 AT5G01130 31.935 429 227 12 9 418 7 389 2.78e-49 174
MS.gene89292.t1 AT3G09140 33.422 377 185 9 1 318 1 370 5.70e-48 172
MS.gene89292.t1 AT5G01140 30.023 433 245 13 6 419 4 397 2.33e-46 167
MS.gene89292.t1 AT5G37320 29.221 308 189 12 12 295 10 312 1.04e-27 115
MS.gene89292.t1 AT5G43240 29.181 281 164 10 163 420 28 296 6.34e-14 73.2

Find 80 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGTGTACCAAGTTTAA+TGG 0.232838 7.1:+37704145 MS.gene89292:CDS
CTCCGTTTATTCCTAAATTC+TGG 0.237268 7.1:-37704360 None:intergenic
GGAGGAGTTGTTCGTGTATT+AGG 0.238928 7.1:+37704772 MS.gene89292:CDS
AAATAACCTTCATCACTTCT+TGG 0.243046 7.1:-37705090 None:intergenic
TTTGGATGAAACCAAATATT+TGG 0.251911 7.1:+37704846 MS.gene89292:CDS
CTCGGTCTTCTCCAGAATTT+AGG 0.266008 7.1:+37704349 MS.gene89292:CDS
CGAAGAATATAGAAGTGATT+TGG 0.274451 7.1:+37705038 MS.gene89292:CDS
ACACCCACACTTCTTATTAC+TGG 0.287356 7.1:-37704197 None:intergenic
GACTTGGTTGTGACCCCTTT+TGG 0.288893 7.1:+37705144 MS.gene89292:CDS
GCAAATGTCTCTGAAACTTT+TGG 0.307705 7.1:+37703823 MS.gene89292:CDS
CTAGTAAATTGCATTGAGTT+TGG 0.312553 7.1:-37704325 None:intergenic
AAACGGAGCAAGTTCAATTA+AGG 0.325287 7.1:+37704375 MS.gene89292:CDS
ATGAAATGTAAAGCTGAAAT+TGG 0.332624 7.1:-37705170 None:intergenic
TGGTTGCAATAGCATTTCTT+TGG 0.336660 7.1:-37704053 None:intergenic
ATATAAGAGCATCGTTGATT+TGG 0.351911 7.1:+37704828 MS.gene89292:CDS
CTCCAGAATTTAGGAATAAA+CGG 0.376717 7.1:+37704358 MS.gene89292:CDS
TTCAGACAACCAACCGTAAC+CGG 0.382715 7.1:-37703974 None:intergenic
AGCTTCTTAACATTGCCTTT+AGG 0.400280 7.1:+37703911 MS.gene89292:CDS
CTCAGCAAACAAGACTTTGT+TGG 0.402919 7.1:-37703858 None:intergenic
GAAGAATATAGAAGTGATTT+GGG 0.414031 7.1:+37705039 MS.gene89292:CDS
AGCTGAAATTGGAGACCAAA+AGG 0.425434 7.1:-37705159 None:intergenic
TGCAATGGATTTGTTAATGA+TGG 0.428495 7.1:+37704265 MS.gene89292:CDS
CAAATCACTTCTATATTCTT+CGG 0.434472 7.1:-37705037 None:intergenic
CAAATCTGTCAAAGTAGTCT+TGG 0.441080 7.1:-37704569 None:intergenic
GTCTAACATGAGGCCGGTTA+CGG 0.442941 7.1:+37703961 MS.gene89292:CDS
AAAGTCTTGTTTGCTGAGGC+AGG 0.449520 7.1:+37703863 MS.gene89292:CDS
AACATACAACTTTGCAAGGA+TGG 0.455140 7.1:-37704607 None:intergenic
TAGCATTTCTTTGGTTGTAT+CGG 0.455505 7.1:-37704044 None:intergenic
GTGCACACGCGGATTGTCAA+TGG 0.457313 7.1:-37704950 None:intergenic
TTTACATTTCATCAACGAAT+CGG 0.460915 7.1:+37705181 MS.gene89292:CDS
GTTATGTTTCAGATCAAAAG+AGG 0.479220 7.1:-37704632 None:intergenic
GGTACACAAGAAGTACTTTG+TGG 0.483841 7.1:-37704134 None:intergenic
AAGTGATGAAGGTTATTTGA+AGG 0.486673 7.1:+37705095 MS.gene89292:CDS
TCTGTAGCCATGTACGCTCT+TGG 0.488508 7.1:-37705120 None:intergenic
CTTGTTTGCTGAGGCAGGAA+AGG 0.489146 7.1:+37703868 MS.gene89292:CDS
TGCACACGCGGATTGTCAAT+GGG 0.493613 7.1:-37704949 None:intergenic
GCTGAAATTGGAGACCAAAA+GGG 0.501399 7.1:-37705158 None:intergenic
GTACACAAGAAGTACTTTGT+GGG 0.509774 7.1:-37704133 None:intergenic
TCTCTGAAACATTTCTGCAA+TGG 0.511623 7.1:+37704250 MS.gene89292:CDS
TTAGGAGGTAACTGTTCTGT+TGG 0.516075 7.1:+37704790 MS.gene89292:CDS
AAGAACACTTTAGCATATCA+AGG 0.519813 7.1:-37704540 None:intergenic
GAAGGGACCAAGAGCGTACA+TGG 0.520645 7.1:+37705113 MS.gene89292:CDS
CTTCTTTACAAGTCTTGCAA+TGG 0.526058 7.1:-37703936 None:intergenic
GAGGCTTGTTGACCCACACT+TGG 0.532128 7.1:+37704888 MS.gene89292:CDS
GGGAAGATATTGTATGCTCA+AGG 0.535596 7.1:+37704700 MS.gene89292:CDS
GGACGTGCAGCCATTAAACT+TGG 0.537188 7.1:-37704155 None:intergenic
TTTCTTCTATTTCCTATGGG+AGG 0.545340 7.1:+37704754 MS.gene89292:CDS
AATTCCTCTTAATGATCTGA+AGG 0.545429 7.1:+37705205 MS.gene89292:CDS
TGAGGCAGGAAAGGACTTTG+TGG 0.546593 7.1:+37703877 MS.gene89292:CDS
ATTGATAGTGAATGTCACTA+AGG 0.550838 7.1:+37704399 MS.gene89292:CDS
AGTGATGAAGGTTATTTGAA+GGG 0.554151 7.1:+37705096 MS.gene89292:CDS
TCAATGCAATTTACTAGCCT+CGG 0.554838 7.1:+37704331 MS.gene89292:CDS
GAATCACCAAGAAGTGATGA+AGG 0.558748 7.1:+37705084 MS.gene89292:CDS
AACATGAGGCCGGTTACGGT+TGG 0.562784 7.1:+37703965 MS.gene89292:CDS
TTTGGGTAAGTATGAACTGA+TGG 0.564393 7.1:+37705056 MS.gene89292:CDS
AGTCTTGCAATGGTTCCTAA+AGG 0.567213 7.1:-37703926 None:intergenic
GGTAAACATACAACTTTGCA+AGG 0.582274 7.1:-37704611 None:intergenic
ATTTCCAGTAATAAGAAGTG+TGG 0.583298 7.1:+37704193 MS.gene89292:CDS
GGAGTTGTTCGTGTATTAGG+AGG 0.583514 7.1:+37704775 MS.gene89292:CDS
GAAGATATTGTATGCTCAAG+GGG 0.583525 7.1:+37704702 MS.gene89292:CDS
GAAGAAGTCTAACATGAGGC+CGG 0.584857 7.1:+37703955 MS.gene89292:CDS
TTGAGTAGTTGTAGCAGCCA+TGG 0.585754 7.1:-37703792 None:intergenic
GTACATGGCTACAGATGACT+TGG 0.587051 7.1:+37705128 MS.gene89292:CDS
GGAAGATATTGTATGCTCAA+GGG 0.595124 7.1:+37704701 MS.gene89292:CDS
TATATAGTCGAGCCAAGTGT+GGG 0.595828 7.1:-37704900 None:intergenic
TTATATAGTCGAGCCAAGTG+TGG 0.606586 7.1:-37704901 None:intergenic
CTTGTTATAAGAAAATCAGA+TGG 0.612705 7.1:+37704679 MS.gene89292:CDS
ACACGAACAACTCCTCCCAT+AGG 0.613827 7.1:-37704766 None:intergenic
CTGAAATTGGAGACCAAAAG+GGG 0.617159 7.1:-37705157 None:intergenic
TGCTACAACTACTCAAACAG+AGG 0.618132 7.1:+37703799 MS.gene89292:CDS
CAACAAAGTCTTGTTTGCTG+AGG 0.619746 7.1:+37703859 MS.gene89292:CDS
AAACAATAATTGTGCACACG+CGG 0.619975 7.1:-37704961 None:intergenic
TTTCCAGTAATAAGAAGTGT+GGG 0.622548 7.1:+37704194 MS.gene89292:CDS
GGAAATGTTCAAATAATGAG+AGG 0.623503 7.1:-37704176 None:intergenic
ATGTTTCAGAGAAACTGAGC+GGG 0.634475 7.1:-37704239 None:intergenic
TAAAGAAGAAGTCTAACATG+AGG 0.648516 7.1:+37703951 MS.gene89292:CDS
TTGTTATAAGAAAATCAGAT+GGG 0.648613 7.1:+37704680 MS.gene89292:CDS
AGTGAATGTCACTAAGGACA+AGG 0.660820 7.1:+37704405 MS.gene89292:CDS
CTAAATTCTGGAGAAGACCG+AGG 0.679271 7.1:-37704348 None:intergenic
AATGTTTCAGAGAAACTGAG+CGG 0.749486 7.1:-37704240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTATAAGAAAATCAGAT+GGG + chr7.1:37704680-37704699 MS.gene89292:CDS 20.0%
!!! CACAATTATTGTTTTTATCA+AGG + chr7.1:37704970-37704989 MS.gene89292:CDS 20.0%
!!! TAATTTTCTGACGAATTTTT+TGG - chr7.1:37704076-37704095 None:intergenic 20.0%
! ATGAAATGTAAAGCTGAAAT+TGG - chr7.1:37705173-37705192 None:intergenic 25.0%
! CAAATCACTTCTATATTCTT+CGG - chr7.1:37705040-37705059 None:intergenic 25.0%
! GAAGAATATAGAAGTGATTT+GGG + chr7.1:37705039-37705058 MS.gene89292:CDS 25.0%
! TTAAATAATCTATGCAATGC+AGG + chr7.1:37704516-37704535 MS.gene89292:intron 25.0%
! TTTACATTTCATCAACGAAT+CGG + chr7.1:37705181-37705200 MS.gene89292:CDS 25.0%
! TTTGGATGAAACCAAATATT+TGG + chr7.1:37704846-37704865 MS.gene89292:CDS 25.0%
!! AGTTTTCTTCTATTTCCTAT+GGG + chr7.1:37704751-37704770 MS.gene89292:CDS 25.0%
!! CTTGTTATAAGAAAATCAGA+TGG + chr7.1:37704679-37704698 MS.gene89292:CDS 25.0%
!! TTCTTTTGACACCAAATATT+TGG - chr7.1:37704860-37704879 None:intergenic 25.0%
!!! TTTTGTTATCACTGACAATT+TGG + chr7.1:37704294-37704313 MS.gene89292:CDS 25.0%
AAATAACCTTCATCACTTCT+TGG - chr7.1:37705093-37705112 None:intergenic 30.0%
AAGAACACTTTAGCATATCA+AGG - chr7.1:37704543-37704562 None:intergenic 30.0%
AAGTGATGAAGGTTATTTGA+AGG + chr7.1:37705095-37705114 MS.gene89292:CDS 30.0%
AGTGATGAAGGTTATTTGAA+GGG + chr7.1:37705096-37705115 MS.gene89292:CDS 30.0%
ATTTCCAGTAATAAGAAGTG+TGG + chr7.1:37704193-37704212 MS.gene89292:CDS 30.0%
CGAAGAATATAGAAGTGATT+TGG + chr7.1:37705038-37705057 MS.gene89292:CDS 30.0%
CTAGTAAATTGCATTGAGTT+TGG - chr7.1:37704328-37704347 None:intergenic 30.0%
CTCCAGAATTTAGGAATAAA+CGG + chr7.1:37704358-37704377 MS.gene89292:CDS 30.0%
GGAAATGTTCAAATAATGAG+AGG - chr7.1:37704179-37704198 None:intergenic 30.0%
GTTATGTTTCAGATCAAAAG+AGG - chr7.1:37704635-37704654 None:intergenic 30.0%
TAAAGAAGAAGTCTAACATG+AGG + chr7.1:37703951-37703970 MS.gene89292:CDS 30.0%
TAGCATTTCTTTGGTTGTAT+CGG - chr7.1:37704047-37704066 None:intergenic 30.0%
TTCTTGTGTACCAAGTTTAA+TGG + chr7.1:37704145-37704164 MS.gene89292:CDS 30.0%
! GAGTTTTCTTCTATTTCCTA+TGG + chr7.1:37704750-37704769 MS.gene89292:CDS 30.0%
! TTTCCAGTAATAAGAAGTGT+GGG + chr7.1:37704194-37704213 MS.gene89292:CDS 30.0%
!! ATATAAGAGCATCGTTGATT+TGG + chr7.1:37704828-37704847 MS.gene89292:CDS 30.0%
!! ATTGATAGTGAATGTCACTA+AGG + chr7.1:37704399-37704418 MS.gene89292:CDS 30.0%
!! TGCAATGGATTTGTTAATGA+TGG + chr7.1:37704265-37704284 MS.gene89292:CDS 30.0%
AAACAATAATTGTGCACACG+CGG - chr7.1:37704964-37704983 None:intergenic 35.0%
AAACGGAGCAAGTTCAATTA+AGG + chr7.1:37704375-37704394 MS.gene89292:CDS 35.0%
AACATACAACTTTGCAAGGA+TGG - chr7.1:37704610-37704629 None:intergenic 35.0%
AATGTTTCAGAGAAACTGAG+CGG - chr7.1:37704243-37704262 None:intergenic 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.1:37703911-37703930 MS.gene89292:CDS 35.0%
CAAATCTGTCAAAGTAGTCT+TGG - chr7.1:37704572-37704591 None:intergenic 35.0%
CTCCGTTTATTCCTAAATTC+TGG - chr7.1:37704363-37704382 None:intergenic 35.0%
CTTCTTTACAAGTCTTGCAA+TGG - chr7.1:37703939-37703958 None:intergenic 35.0%
GAAGATATTGTATGCTCAAG+GGG + chr7.1:37704702-37704721 MS.gene89292:CDS 35.0%
GGAAGATATTGTATGCTCAA+GGG + chr7.1:37704701-37704720 MS.gene89292:CDS 35.0%
GGTAAACATACAACTTTGCA+AGG - chr7.1:37704614-37704633 None:intergenic 35.0%
TGCAGTTCTGTTTCGTAAAT+GGG + chr7.1:37704437-37704456 MS.gene89292:intron 35.0%
TGGTTGCAATAGCATTTCTT+TGG - chr7.1:37704056-37704075 None:intergenic 35.0%
TGTCAAAAGAAGCGAAAAAG+AGG + chr7.1:37704869-37704888 MS.gene89292:CDS 35.0%
TTGCAGTTCTGTTTCGTAAA+TGG + chr7.1:37704436-37704455 MS.gene89292:intron 35.0%
TTTCTTCTATTTCCTATGGG+AGG + chr7.1:37704754-37704773 MS.gene89292:CDS 35.0%
TTTGGGTAAGTATGAACTGA+TGG + chr7.1:37705056-37705075 MS.gene89292:CDS 35.0%
! TCAATGCAATTTACTAGCCT+CGG + chr7.1:37704331-37704350 MS.gene89292:CDS 35.0%
!! GTACACAAGAAGTACTTTGT+GGG - chr7.1:37704136-37704155 None:intergenic 35.0%
!! TCTCTGAAACATTTCTGCAA+TGG + chr7.1:37704250-37704269 MS.gene89292:CDS 35.0%
!!! GCAAATGTCTCTGAAACTTT+TGG + chr7.1:37703823-37703842 MS.gene89292:CDS 35.0%
ACACCCACACTTCTTATTAC+TGG - chr7.1:37704200-37704219 None:intergenic 40.0%
AGCTGAAATTGGAGACCAAA+AGG - chr7.1:37705162-37705181 None:intergenic 40.0%
AGTCTTGCAATGGTTCCTAA+AGG - chr7.1:37703929-37703948 None:intergenic 40.0%
AGTGAATGTCACTAAGGACA+AGG + chr7.1:37704405-37704424 MS.gene89292:CDS 40.0%
ATGTTTCAGAGAAACTGAGC+GGG - chr7.1:37704242-37704261 None:intergenic 40.0%
CTCAGCAAACAAGACTTTGT+TGG - chr7.1:37703861-37703880 None:intergenic 40.0%
CTGAAATTGGAGACCAAAAG+GGG - chr7.1:37705160-37705179 None:intergenic 40.0%
GAATCACCAAGAAGTGATGA+AGG + chr7.1:37705084-37705103 MS.gene89292:CDS 40.0%
GCTGAAATTGGAGACCAAAA+GGG - chr7.1:37705161-37705180 None:intergenic 40.0%
GGGAAGATATTGTATGCTCA+AGG + chr7.1:37704700-37704719 MS.gene89292:CDS 40.0%
TATATAGTCGAGCCAAGTGT+GGG - chr7.1:37704903-37704922 None:intergenic 40.0%
TGCTACAACTACTCAAACAG+AGG + chr7.1:37703799-37703818 MS.gene89292:CDS 40.0%
TTAGGAGGTAACTGTTCTGT+TGG + chr7.1:37704790-37704809 MS.gene89292:CDS 40.0%
TTATATAGTCGAGCCAAGTG+TGG - chr7.1:37704904-37704923 None:intergenic 40.0%
!! CAACAAAGTCTTGTTTGCTG+AGG + chr7.1:37703859-37703878 MS.gene89292:CDS 40.0%
!! GGTACACAAGAAGTACTTTG+TGG - chr7.1:37704137-37704156 None:intergenic 40.0%
CTCGGTCTTCTCCAGAATTT+AGG + chr7.1:37704349-37704368 MS.gene89292:CDS 45.0%
GAAGAAGTCTAACATGAGGC+CGG + chr7.1:37703955-37703974 MS.gene89292:CDS 45.0%
GGAGGAGTTGTTCGTGTATT+AGG + chr7.1:37704772-37704791 MS.gene89292:CDS 45.0%
GGAGTTGTTCGTGTATTAGG+AGG + chr7.1:37704775-37704794 MS.gene89292:CDS 45.0%
GTACATGGCTACAGATGACT+TGG + chr7.1:37705128-37705147 MS.gene89292:CDS 45.0%
TTCAGACAACCAACCGTAAC+CGG - chr7.1:37703977-37703996 None:intergenic 45.0%
! CTAAATTCTGGAGAAGACCG+AGG - chr7.1:37704351-37704370 None:intergenic 45.0%
!! AAAGTCTTGTTTGCTGAGGC+AGG + chr7.1:37703863-37703882 MS.gene89292:CDS 45.0%
!! TTATTTAAATTAAAGATTAA+AGG - chr7.1:37704504-37704523 None:intergenic 5.0%
ACACGAACAACTCCTCCCAT+AGG - chr7.1:37704769-37704788 None:intergenic 50.0%
GGACGTGCAGCCATTAAACT+TGG - chr7.1:37704158-37704177 None:intergenic 50.0%
GTCTAACATGAGGCCGGTTA+CGG + chr7.1:37703961-37703980 MS.gene89292:CDS 50.0%
TCTGTAGCCATGTACGCTCT+TGG - chr7.1:37705123-37705142 None:intergenic 50.0%
TGAGGCAGGAAAGGACTTTG+TGG + chr7.1:37703877-37703896 MS.gene89292:CDS 50.0%
! CTTGTTTGCTGAGGCAGGAA+AGG + chr7.1:37703868-37703887 MS.gene89292:CDS 50.0%
! TGCACACGCGGATTGTCAAT+GGG - chr7.1:37704952-37704971 None:intergenic 50.0%
!! GACTTGGTTGTGACCCCTTT+TGG + chr7.1:37705144-37705163 MS.gene89292:CDS 50.0%
AACATGAGGCCGGTTACGGT+TGG + chr7.1:37703965-37703984 MS.gene89292:CDS 55.0%
! GAAGGGACCAAGAGCGTACA+TGG + chr7.1:37705113-37705132 MS.gene89292:CDS 55.0%
! GTGCACACGCGGATTGTCAA+TGG - chr7.1:37704953-37704972 None:intergenic 55.0%
!! GAGGCTTGTTGACCCACACT+TGG + chr7.1:37704888-37704907 MS.gene89292:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 37703794 37705224 37703794 ID=MS.gene89292
chr7.1 mRNA 37703794 37705224 37703794 ID=MS.gene89292.t1;Parent=MS.gene89292
chr7.1 exon 37703794 37704426 37703794 ID=MS.gene89292.t1.exon1;Parent=MS.gene89292.t1
chr7.1 CDS 37703794 37704426 37703794 ID=cds.MS.gene89292.t1;Parent=MS.gene89292.t1
chr7.1 exon 37704538 37705224 37704538 ID=MS.gene89292.t1.exon2;Parent=MS.gene89292.t1
chr7.1 CDS 37704538 37705224 37704538 ID=cds.MS.gene89292.t1;Parent=MS.gene89292.t1
Gene Sequence

>MS.gene89292

ATGGCTGCTACAACTACTCAAACAGAGGAGCAAATGTCTCTGAAACTTTTGGTAAACAAAGAGACCAACAAAGTCTTGTTTGCTGAGGCAGGAAAGGACTTTGTGGATGTTCTGTTTAGCTTCTTAACATTGCCTTTAGGAACCATTGCAAGACTTGTAAAGAAGAAGTCTAACATGAGGCCGGTTACGGTTGGTTGTCTGAATAAACTTTATCGTAGTCTGAATGATCTCGACGAAGAGTTTCTTAGAACCGATACAACCAAAGAAATGCTATTGCAACCAAAAAATTCGTCAGAAAATTATTGTAGCAATCTTAAACTGAACATTGATGATACTGAGCCCACAAAGTACTTCTTGTGTACCAAGTTTAATGGCTGCACGTCCTCTCATTATTTGAACATTTCCAGTAATAAGAAGTGTGGGTGTGATAGTGCTGATTATTATACCCGCTCAGTTTCTCTGAAACATTTCTGCAATGGATTTGTTAATGATGGTACTAGTTTTGTTATCACTGACAATTTGGTTGTCATGCCAAACTCAATGCAATTTACTAGCCTCGGTCTTCTCCAGAATTTAGGAATAAACGGAGCAAGTTCAATTAAGGAATTGATAGTGAATGTCACTAAGGACAAGGTAATGCATTTGCAGTTCTGTTTCGTAAATGGGTGCTTCTTTGTATTTATTTACTCTATTTAAAAAAATAGCTTCCTTTAATCTTTAATTTAAATAATCTATGCAATGCAGGTCCTTGATATGCTAAAGTGTTCTTTGATTTCCAAGACTACTTTGACAGATTTGTTTTTACGAAAGAAACCATCCTTGCAAAGTTGTATGTTTACCTCTTTTGATCTGAAACATAACTGTAACATCAAAATAAACGTGAAGCTTGTTATAAGAAAATCAGATGGGAAGATATTGTATGCTCAAGGGGAACAAGATTTTGCTGACTTACTTTTGAGTTTTCTTCTATTTCCTATGGGAGGAGTTGTTCGTGTATTAGGAGGTAACTGTTCTGTTGGCAATATTGATTCGTTATATAAGAGCATCGTTGATTTGGATGAAACCAAATATTTGGTGTCAAAAGAAGCGAAAAAGAGGCTTGTTGACCCACACTTGGCTCGACTATATAAATTTAAATTAAGCAACGAGATAGTACCCATTGACAATCCGCGTGTGCACAATTATTGTTTTTATCAAGGTGAAAATTACGAAAAAAGTGTAAGAAATTATAAATTTTTCATCACCGAAGAATATAGAAGTGATTTGGGTAAGTATGAACTGATGGATGTTGAATCACCAAGAAGTGATGAAGGTTATTTGAAGGGACCAAGAGCGTACATGGCTACAGATGACTTGGTTGTGACCCCTTTTGGTCTCCAATTTCAGCTTTACATTTCATCAACGAATCGGAAATTCCTCTTAATGATCTGA
Protein sequence

>MS.gene89292.t1

MAATTTQTEEQMSLKLLVNKETNKVLFAEAGKDFVDVLFSFLTLPLGTIARLVKKKSNMRPVTVGCLNKLYRSLNDLDEEFLRTDTTKEMLLQPKNSSENYCSNLKLNIDDTEPTKYFLCTKFNGCTSSHYLNISSNKKCGCDSADYYTRSVSLKHFCNGFVNDGTSFVITDNLVVMPNSMQFTSLGLLQNLGINGASSIKELIVNVTKDKVLDMLKCSLISKTTLTDLFLRKKPSLQSCMFTSFDLKHNCNIKINVKLVIRKSDGKILYAQGEQDFADLLLSFLLFPMGGVVRVLGGNCSVGNIDSLYKSIVDLDETKYLVSKEAKKRLVDPHLARLYKFKLSNEIVPIDNPRVHNYCFYQGENYEKSVRNYKFFITEEYRSDLGKYELMDVESPRSDEGYLKGPRAYMATDDLVVTPFGLQFQLYISSTNRKFLLMI