AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055098

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055098.t1 MTR_7g066340 72.727 473 73 2 1 417 1 473 0.0 650
MS.gene055098.t1 MTR_7g066280 68.394 386 50 2 82 417 47 410 2.84e-172 492
MS.gene055098.t1 MTR_7g066310 57.759 464 77 6 9 417 4 403 7.94e-160 460
MS.gene055098.t1 MTR_7g066350 57.388 467 124 10 1 401 1 458 1.02e-159 461
MS.gene055098.t1 MTR_7g066350 28.807 243 129 9 201 406 3 238 2.97e-13 72.0
MS.gene055098.t1 MTR_7g066260 52.361 487 157 9 6 421 9 491 3.22e-151 441
MS.gene055098.t1 MTR_1g041315 53.812 446 132 7 7 381 9 451 1.43e-142 419
MS.gene055098.t1 MTR_7g066400 51.868 455 137 7 1 394 1 434 1.87e-140 412
MS.gene055098.t1 MTR_7g066570 48.249 514 165 10 3 426 5 507 1.36e-133 399
MS.gene055098.t1 MTR_7g066360 50.000 470 157 9 6 411 8 463 4.35e-127 379
MS.gene055098.t1 MTR_7g066290 49.231 455 140 9 6 398 9 434 5.00e-120 359
MS.gene055098.t1 MTR_7g058710 45.528 492 158 11 1 397 1 477 1.92e-114 347
MS.gene055098.t1 MTR_7g012680 46.072 471 160 9 3 403 5 451 1.74e-113 343
MS.gene055098.t1 MTR_2g029400 48.252 429 140 13 6 385 8 403 3.61e-105 320
MS.gene055098.t1 MTR_7g066580 45.752 459 164 12 18 403 1 447 2.44e-103 317
MS.gene055098.t1 MTR_7g058700 45.035 433 137 9 24 397 531 921 1.74e-97 315
MS.gene055098.t1 MTR_7g066430 38.320 488 193 11 12 397 4 485 6.48e-91 286
MS.gene055098.t1 MTR_7g066410 35.630 508 200 12 12 397 10 512 2.20e-81 262
MS.gene055098.t1 MTR_7g066480 37.613 444 187 9 11 399 15 423 2.64e-77 249
MS.gene055098.t1 MTR_7g066490 37.215 438 181 10 12 399 16 409 9.04e-73 237
MS.gene055098.t1 MTR_7g063920 36.073 438 231 10 1 397 1 430 3.91e-71 233
MS.gene055098.t1 MTR_3g007740 35.714 448 214 10 11 397 8 442 3.85e-70 231
MS.gene055098.t1 MTR_7g066680 46.823 299 96 6 159 394 37 335 1.53e-69 226
MS.gene055098.t1 MTR_7g063660 32.305 486 216 11 7 397 4 471 1.62e-69 230
MS.gene055098.t1 MTR_7g063880 33.264 481 213 13 5 398 4 463 2.54e-65 219
MS.gene055098.t1 MTR_7g063900 35.787 489 209 13 5 397 3 482 4.58e-65 219
MS.gene055098.t1 MTR_7g063900 27.049 244 139 9 210 416 13 254 1.30e-14 76.6
MS.gene055098.t1 MTR_7g063840 32.008 478 233 12 1 397 1 467 3.17e-61 208
MS.gene055098.t1 MTR_4g017830 30.192 520 243 11 1 408 1 512 1.68e-59 205
MS.gene055098.t1 MTR_4g019310 32.193 497 216 13 6 393 2 486 3.57e-58 201
MS.gene055098.t1 MTR_7g063890 35.062 482 209 12 11 397 26 498 2.06e-57 199
MS.gene055098.t1 MTR_7g063670 34.312 443 226 12 13 397 16 451 8.10e-57 196
MS.gene055098.t1 MTR_4g017440 30.000 500 237 10 6 397 8 502 1.34e-54 191
MS.gene055098.t1 MTR_4g019340 31.064 470 224 10 13 387 39 503 1.23e-53 189
MS.gene055098.t1 MTR_4g017470 30.252 476 247 12 1 397 1 470 2.05e-51 182
MS.gene055098.t1 MTR_4g017470 28.216 241 142 7 200 422 5 232 5.73e-14 74.7
MS.gene055098.t1 MTR_7g062280 34.493 345 184 9 85 397 151 485 3.32e-51 182
MS.gene055098.t1 MTR_7g062280 53.947 76 35 0 5 80 3 78 1.24e-16 82.8
MS.gene055098.t1 MTR_7g063820 35.780 327 165 7 107 397 161 478 3.65e-50 179
MS.gene055098.t1 MTR_7g063820 47.674 86 38 1 5 90 3 81 4.95e-16 80.9
MS.gene055098.t1 MTR_7g062300 33.613 357 199 10 67 395 125 471 5.02e-50 178
MS.gene055098.t1 MTR_7g062300 51.163 86 42 0 1 86 1 86 5.65e-19 90.1
MS.gene055098.t1 MTR_7g062300 27.111 225 126 9 203 391 8 230 5.06e-12 68.6
MS.gene055098.t1 MTR_7g066390 56.962 158 40 1 248 405 1 130 1.01e-49 168
MS.gene055098.t1 MTR_3g065200 30.519 462 180 13 10 384 1 408 2.26e-49 176
MS.gene055098.t1 MTR_4g017610 29.661 472 229 12 15 394 16 476 9.34e-48 172
MS.gene055098.t1 MTR_4g017610 26.050 238 134 7 200 395 6 243 1.32e-11 67.0
MS.gene055098.t1 MTR_4g017410 29.774 487 242 15 6 397 3 484 2.86e-47 171
MS.gene055098.t1 MTR_7g063830 35.569 343 174 9 69 397 129 438 7.03e-45 164
MS.gene055098.t1 MTR_7g063830 47.619 84 42 1 1 84 1 82 1.18e-16 82.8
MS.gene055098.t1 MTR_7g100420 32.697 419 187 13 13 397 40 397 7.13e-41 152
MS.gene055098.t1 MTR_1g014060 42.922 219 64 5 21 182 9 223 1.84e-40 150
MS.gene055098.t1 MTR_1g014060 46.409 181 83 3 237 403 210 390 1.85e-37 142
MS.gene055098.t1 MTR_7g063720 37.619 210 118 3 201 397 17 226 1.74e-37 138
MS.gene055098.t1 MTR_4g017550 26.882 465 217 13 41 395 20 471 5.24e-32 128
MS.gene055098.t1 MTR_7g063690 36.323 223 128 7 13 234 13 222 5.15e-30 117
MS.gene055098.t1 MTR_2g067310 45.714 140 47 3 23 140 58 190 6.21e-26 106
MS.gene055098.t1 MTR_7g063850 29.180 305 153 10 130 397 4 282 1.77e-23 100
MS.gene055098.t1 MTR_8g023240 24.094 469 257 13 13 398 38 490 9.78e-22 99.0
MS.gene055098.t1 MTR_8g445860 30.180 222 118 6 205 390 11 231 4.68e-20 89.7
MS.gene055098.t1 MTR_0150s0010 29.778 225 118 5 205 390 8 231 8.66e-20 89.0
MS.gene055098.t1 MTR_4g019330 33.702 181 86 4 221 397 32 182 1.04e-19 87.4
MS.gene055098.t1 MTR_7g062270 46.377 69 37 0 13 81 11 79 1.68e-13 72.4
MS.gene055098.t1 MTR_4g019240 35.354 99 56 3 3 94 4 101 1.89e-11 63.5
MS.gene055098.t1 MTR_1g115470 47.222 72 33 1 12 83 6 72 2.50e-11 66.2
MS.gene055098.t1 MTR_1g115455 36.434 129 63 5 6 126 3 120 4.75e-11 63.2
MS.gene055098.t1 MTR_7g063760 43.939 66 36 1 333 397 2 67 6.65e-11 58.5
MS.gene055098.t1 MTR_1g115440 42.169 83 42 2 1 83 1 77 8.78e-11 62.8
MS.gene055098.t1 MTR_1g115450 40.260 77 41 1 7 83 2 73 9.04e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055098.t1 AT5G01150 26.891 476 259 10 12 400 9 482 1.14e-39 150
MS.gene055098.t1 AT5G01120 26.360 478 253 9 13 393 10 485 1.86e-38 147
MS.gene055098.t1 AT5G01130 28.814 472 233 14 1 397 1 444 1.89e-38 146
MS.gene055098.t1 AT5G01140 26.160 474 255 11 12 409 9 463 1.17e-37 144
MS.gene055098.t1 AT5G43240 27.413 518 253 17 13 422 10 512 5.93e-37 143
MS.gene055098.t1 AT5G43240 27.413 518 253 17 13 422 10 512 5.93e-37 143
MS.gene055098.t1 AT5G43240 27.413 518 253 17 13 422 10 512 5.93e-37 143
MS.gene055098.t1 AT3G09110 28.125 320 165 9 12 272 9 322 5.52e-29 117
MS.gene055098.t1 AT3G09140 28.912 377 224 12 58 401 132 497 4.01e-28 117
MS.gene055098.t1 AT3G09140 36.885 122 70 2 1 118 1 119 1.80e-15 79.3
MS.gene055098.t1 AT3G09140 27.174 368 203 10 91 401 166 525 1.22e-24 107
MS.gene055098.t1 AT3G09140 36.885 122 70 2 1 118 1 119 2.03e-15 79.3
MS.gene055098.t1 AT5G43240 28.746 327 181 10 110 393 28 345 4.30e-24 103
MS.gene055098.t1 AT5G37320 25.000 500 254 20 3 400 2 482 9.89e-23 101
MS.gene055098.t1 AT3G09120 26.837 313 163 7 11 261 5 313 2.73e-22 97.8

Find 86 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGCACCATTAACGTTTA+TGG 0.174129 7.4:+38454155 MS.gene055098:CDS
CAATTTCATTACTCAAATTC+TGG 0.194815 7.4:-38453372 None:intergenic
GATCCTAAATCCCCTATTTC+TGG 0.194829 7.4:+38454123 MS.gene055098:CDS
CTAGCATATCCTCCAGAAAT+AGG 0.222209 7.4:-38454135 None:intergenic
CAGAATTTGAGTAATGAAAT+TGG 0.244591 7.4:+38453373 MS.gene055098:CDS
CCTCCAGAAATAGGGGATTT+AGG 0.261981 7.4:-38454126 None:intergenic
AAGAAAAGATACCTCTTTCT+TGG 0.262602 7.4:-38453542 None:intergenic
CAAGGTTACCATTAGAGTTT+TGG 0.279997 7.4:+38452966 MS.gene055098:CDS
TGATCTTCTCAAATTGTCTT+TGG 0.284928 7.4:+38453657 MS.gene055098:CDS
GATACCTTGTAACGATTATA+AGG 0.318916 7.4:+38454074 MS.gene055098:CDS
CTTGGTGATGTTGATATTAA+CGG 0.332558 7.4:-38453524 None:intergenic
AAAGTTGTCGTAACAACATT+TGG 0.340302 7.4:-38453448 None:intergenic
ATATCATCACTTTAAATTGT+TGG 0.353901 7.4:-38455670 None:intergenic
AACCTAATGGAGGTTAATAT+TGG 0.358716 7.4:+38453748 MS.gene055098:CDS
TCAAAATTTGCTTTGACAAA+CGG 0.362323 7.4:+38454415 MS.gene055098:CDS
TAGCATATCCTCCAGAAATA+GGG 0.363628 7.4:-38454134 None:intergenic
GAGGAAATGGTCGTTAATAT+TGG 0.365896 7.4:+38454264 MS.gene055098:CDS
TTTAGTCCCAAGTAACCTAA+TGG 0.371307 7.4:+38453735 MS.gene055098:CDS
TAAATTATCAATGCAGCTTA+AGG 0.378298 7.4:-38453935 None:intergenic
AAATGCTTGGATTAGTTAGT+AGG 0.380859 7.4:-38454017 None:intergenic
AACCACCATCAACATAGATT+TGG 0.380923 7.4:-38455607 None:intergenic
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.4:+38454433 MS.gene055098:CDS
GCTTCTTAACATTGCGCTTA+GGG 0.394593 7.4:+38453055 MS.gene055098:CDS
TTAACCTCCATTAGGTTACT+TGG 0.395276 7.4:-38453742 None:intergenic
TACCAATATTAACCTCCATT+AGG 0.400093 7.4:-38453750 None:intergenic
TCAAATTCTGGAATTCTTCT+CGG 0.402305 7.4:-38453360 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.4:+38453469 MS.gene055098:CDS
GGCAGGAAGTAGATCTGTTC+AGG 0.408889 7.4:+38454887 MS.gene055098:intron
TCTGTCACCATAAACGTTAA+TGG 0.411866 7.4:-38454162 None:intergenic
TACTATACTAACCAATGAAC+TGG 0.412581 7.4:-38454444 None:intergenic
TACAAGGTATCGGTAATATC+TGG 0.416442 7.4:-38454062 None:intergenic
AGCTTCTTAACATTGCGCTT+AGG 0.417921 7.4:+38453054 MS.gene055098:CDS
AATATTGAAGCACTGAGCTT+TGG 0.420564 7.4:+38453108 MS.gene055098:CDS
ATCAACCAAATCTATGTTGA+TGG 0.421611 7.4:+38455602 MS.gene055098:CDS
AAGATATGAAATACCATCAA+TGG 0.434003 7.4:-38454211 None:intergenic
CTTGTCCACCAAAACTCTAA+TGG 0.440326 7.4:-38452974 None:intergenic
ACTTAATGATGTGGAGGAAA+TGG 0.448325 7.4:+38454251 MS.gene055098:CDS
AAAGGAAGAATCTGACGAAA+TGG 0.451310 7.4:+38453777 MS.gene055098:CDS
TGAGCTCAGAAAAGTGCTTA+AGG 0.457575 7.4:+38453977 MS.gene055098:CDS
TCTATTTGCTGAGGCAGATA+AGG 0.457603 7.4:+38453011 MS.gene055098:CDS
GTGTACCATCAATCTGGCCT+TGG 0.459876 7.4:-38455500 None:intergenic
CAAGACCAAGGCCAGATTGA+TGG 0.466792 7.4:+38455495 MS.gene055098:CDS
CACATTGTGTACCATCAATC+TGG 0.468254 7.4:-38455506 None:intergenic
CAGAAATAACGTCACTTACA+AGG 0.471169 7.4:+38455550 MS.gene055098:CDS
CTTACCTTATAATCGTTACA+AGG 0.487269 7.4:-38454078 None:intergenic
ACTCCAATGCCATCCATTGA+TGG 0.490084 7.4:+38454198 MS.gene055098:CDS
GTTCGTGAGTTCAGACTGTA+TGG 0.490803 7.4:-38454040 None:intergenic
GGTTAATATTGGTAAAGAAA+AGG 0.492157 7.4:+38453759 MS.gene055098:CDS
ATTTCCTCCACATCATTAAG+TGG 0.492887 7.4:-38454249 None:intergenic
AGGAATCAGAAATGTATTTG+TGG 0.500975 7.4:+38453325 MS.gene055098:intron
GCATTGGAGTCACAACCAAC+TGG 0.508849 7.4:-38454185 None:intergenic
TCAGACTGTATGGAAATGCT+TGG 0.510196 7.4:-38454030 None:intergenic
TAACCTCCATTAGGTTACTT+GGG 0.510702 7.4:-38453741 None:intergenic
CATCCAGCAGTATCATCATT+AGG 0.516253 7.4:-38455420 None:intergenic
GATCTTGTTTATTGAAGCAG+AGG 0.517035 7.4:+38453834 MS.gene055098:CDS
CAGCCTAATGATGATACTGC+TGG 0.517497 7.4:+38455417 MS.gene055098:intron
TTTCTCACCTTTCCCTTGGG+AGG 0.518315 7.4:+38453883 MS.gene055098:CDS
TATCAACATCACCAAGAAAG+AGG 0.532453 7.4:+38453531 MS.gene055098:CDS
ATACCATCAATGGATGGCAT+TGG 0.542259 7.4:-38454201 None:intergenic
TTATAATCGTTACAAGGTAT+CGG 0.556667 7.4:-38454072 None:intergenic
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.4:-38453477 None:intergenic
AATGATGATACTGCTGGATG+TGG 0.562722 7.4:+38455423 MS.gene055098:CDS
ACTAACCAATGAACTGGTTG+AGG 0.567961 7.4:-38454438 None:intergenic
TAACACTCCTCCCAAGGGAA+AGG 0.572666 7.4:-38453890 None:intergenic
AGCATATCCTCCAGAAATAG+GGG 0.573043 7.4:-38454133 None:intergenic
CTCAGCAAAACAAGTAGACA+AGG 0.581182 7.4:+38452948 MS.gene055098:CDS
CATATGTAACACTCCTCCCA+AGG 0.585037 7.4:-38453896 None:intergenic
TATGAAATACCATCAATGGA+TGG 0.601386 7.4:-38454207 None:intergenic
AAATAAAGTTCTATTTGCTG+AGG 0.602370 7.4:+38453002 MS.gene055098:CDS
GTTTATGGTGACAGACCAGT+TGG 0.602694 7.4:+38454170 MS.gene055098:CDS
AGGGACCATTGCAAAACTTG+TGG 0.604088 7.4:+38453074 MS.gene055098:CDS
CGTTAATATTGGCCAGAAGG+AGG 0.604404 7.4:+38454275 MS.gene055098:CDS
GGTCGTTAATATTGGCCAGA+AGG 0.607810 7.4:+38454272 MS.gene055098:CDS
GAACGTCCCACTTAATGATG+TGG 0.609331 7.4:+38454242 MS.gene055098:CDS
AAGCTTGGAGTCAATGACAT+TGG 0.612687 7.4:+38453484 MS.gene055098:CDS
CGTCCCACTTAATGATGTGG+AGG 0.619494 7.4:+38454245 MS.gene055098:CDS
TTAAATATAAAGTCTGACAG+AGG 0.620186 7.4:-38453691 None:intergenic
AACCAAATCTATGTTGATGG+TGG 0.623412 7.4:+38455605 MS.gene055098:CDS
TTTCCTCCACATCATTAAGT+GGG 0.624477 7.4:-38454248 None:intergenic
AGTCCCAAGTAACCTAATGG+AGG 0.625649 7.4:+38453738 MS.gene055098:CDS
CCTAAATCCCCTATTTCTGG+AGG 0.628731 7.4:+38454126 MS.gene055098:CDS
GTTGGCAATCAAGCATATTG+TGG 0.641007 7.4:-38455652 None:intergenic
ATATGTAACACTCCTCCCAA+GGG 0.664294 7.4:-38453895 None:intergenic
ATGTGTTGAATGTTGCAAGA+AGG 0.665559 7.4:+38455524 MS.gene055098:CDS
AAAGTTGAAGGTCAAGACCA+AGG 0.676584 7.4:+38455483 MS.gene055098:CDS
GGAGTGTTACATATGCTCGA+AGG 0.683354 7.4:+38453904 MS.gene055098:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTATAATTATTATGT+AGG - chr7.4:38454490-38454509 None:intergenic 10.0%
!! ATGATAAAAATACATGAATT+TGG - chr7.4:38455143-38455162 None:intergenic 15.0%
!! TAACAATAATTATATAACTG+AGG - chr7.4:38455179-38455198 None:intergenic 15.0%
!! AAAAAATCAACAAAAGTTGA+AGG + chr7.4:38455471-38455490 MS.gene055098:CDS 20.0%
!! AAACAAGTTATTAGTTAGAA+TGG - chr7.4:38455383-38455402 None:intergenic 20.0%
!! AACAAGTTATTAGTTAGAAT+GGG - chr7.4:38455382-38455401 None:intergenic 20.0%
!! AATACATGAATTTGGTAAAA+AGG - chr7.4:38455135-38455154 None:intergenic 20.0%
!! ATCTTGATGAAAAATATCTA+TGG + chr7.4:38453163-38453182 MS.gene055098:CDS 20.0%
!! TATAATTATTATGTAGGATG+AGG - chr7.4:38454484-38454503 None:intergenic 20.0%
!!! ATTTTTGTGTTTGAAATATG+TGG + chr7.4:38454985-38455004 MS.gene055098:intron 20.0%
!!! TTATTGTTATTTATGTGACA+AGG + chr7.4:38455190-38455209 MS.gene055098:intron 20.0%
! AAGATATGAAATACCATCAA+TGG - chr7.4:38454214-38454233 None:intergenic 25.0%
! CAAACACAAAAATAGAAACA+TGG - chr7.4:38454978-38454997 None:intergenic 25.0%
! CAATAATTATATAACTGAGG+TGG - chr7.4:38455176-38455195 None:intergenic 25.0%
! CAATTTCATTACTCAAATTC+TGG - chr7.4:38453375-38453394 None:intergenic 25.0%
! CAGAATTTGAGTAATGAAAT+TGG + chr7.4:38453373-38453392 MS.gene055098:CDS 25.0%
! GGTTAATATTGGTAAAGAAA+AGG + chr7.4:38453759-38453778 MS.gene055098:CDS 25.0%
! TAAATTATCAATGCAGCTTA+AGG - chr7.4:38453938-38453957 None:intergenic 25.0%
! TAGAAAAAGAAGAGAAGTAA+AGG + chr7.4:38454766-38454785 MS.gene055098:intron 25.0%
! TGAACATGCACATATAATAA+AGG - chr7.4:38454866-38454885 None:intergenic 25.0%
! TTAAATATAAAGTCTGACAG+AGG - chr7.4:38453694-38453713 None:intergenic 25.0%
! TTATAATCGTTACAAGGTAT+CGG - chr7.4:38454075-38454094 None:intergenic 25.0%
! TTATTATATGTGCATGTTCA+TGG + chr7.4:38454866-38454885 MS.gene055098:intron 25.0%
!! AAATAAAGTTCTATTTGCTG+AGG + chr7.4:38453002-38453021 MS.gene055098:CDS 25.0%
!! TCAAAATTTGCTTTGACAAA+CGG + chr7.4:38454415-38454434 MS.gene055098:CDS 25.0%
!! TTTTTCATTGCTCTTAATCT+TGG - chr7.4:38455583-38455602 None:intergenic 25.0%
AAAGTTGTCGTAACAACATT+TGG - chr7.4:38453451-38453470 None:intergenic 30.0%
AACCTAATGGAGGTTAATAT+TGG + chr7.4:38453748-38453767 MS.gene055098:CDS 30.0%
AAGAAAAGATACCTCTTTCT+TGG - chr7.4:38453545-38453564 None:intergenic 30.0%
AATACTGTGTAAGTTTCTTC+AGG + chr7.4:38453305-38453324 MS.gene055098:intron 30.0%
AATGAATGGTACCCATATAT+GGG + chr7.4:38454667-38454686 MS.gene055098:intron 30.0%
AGGAATCAGAAATGTATTTG+TGG + chr7.4:38453325-38453344 MS.gene055098:intron 30.0%
ATATGAACATCCCCATATAT+GGG - chr7.4:38454681-38454700 None:intergenic 30.0%
ATCAACCAAATCTATGTTGA+TGG + chr7.4:38455602-38455621 MS.gene055098:CDS 30.0%
ATGGAAGTTTAATAGATCCA+TGG - chr7.4:38455349-38455368 None:intergenic 30.0%
CAACCACAAGAAATCAAATA+TGG - chr7.4:38454362-38454381 None:intergenic 30.0%
CTAATAAGACATGACAATAG+AGG - chr7.4:38455096-38455115 None:intergenic 30.0%
CTCACTAATTCTTCAATATG+TGG + chr7.4:38453620-38453639 MS.gene055098:intron 30.0%
CTTACCTTATAATCGTTACA+AGG - chr7.4:38454081-38454100 None:intergenic 30.0%
GATACCTTGTAACGATTATA+AGG + chr7.4:38454074-38454093 MS.gene055098:CDS 30.0%
TACCAATATTAACCTCCATT+AGG - chr7.4:38453753-38453772 None:intergenic 30.0%
TACTATACTAACCAATGAAC+TGG - chr7.4:38454447-38454466 None:intergenic 30.0%
TACTTCTTGAGAAAGACTAA+GGG + chr7.4:38455061-38455080 MS.gene055098:intron 30.0%
TAGTACTACACATAACAAGT+CGG - chr7.4:38454630-38454649 None:intergenic 30.0%
TATGAAATACCATCAATGGA+TGG - chr7.4:38454210-38454229 None:intergenic 30.0%
TGATCTTCTCAAATTGTCTT+TGG + chr7.4:38453657-38453676 MS.gene055098:CDS 30.0%
TTACTTCTTGAGAAAGACTA+AGG + chr7.4:38455060-38455079 MS.gene055098:intron 30.0%
! GTAACAACTGATTCAATATC+TGG - chr7.4:38455301-38455320 None:intergenic 30.0%
! GTTTGTCAAAGCAAATTTTG+AGG - chr7.4:38454416-38454435 None:intergenic 30.0%
! TCACCATATTTGATTTCTTG+TGG + chr7.4:38454356-38454375 MS.gene055098:intron 30.0%
! TGTGTAGTACTAATTTTCCA+TGG + chr7.4:38454638-38454657 MS.gene055098:intron 30.0%
! TTCTACCTTTTGCATCTTTA+GGG - chr7.4:38454937-38454956 None:intergenic 30.0%
! TTTCTACCTTTTGCATCTTT+AGG - chr7.4:38454938-38454957 None:intergenic 30.0%
!! AAATGCTTGGATTAGTTAGT+AGG - chr7.4:38454020-38454039 None:intergenic 30.0%
!! CTTGGTGATGTTGATATTAA+CGG - chr7.4:38453527-38453546 None:intergenic 30.0%
!! TCAAATTCTGGAATTCTTCT+CGG - chr7.4:38453363-38453382 None:intergenic 30.0%
!!! GTTGATTTTTTGTTGTCTGA+AGG - chr7.4:38455462-38455481 None:intergenic 30.0%
!!! TGGTTTTGTTAACGAAATGT+CGG + chr7.4:38453393-38453412 MS.gene055098:CDS 30.0%
AAAGGAAGAATCTGACGAAA+TGG + chr7.4:38453777-38453796 MS.gene055098:CDS 35.0%
AACCACCATCAACATAGATT+TGG - chr7.4:38455610-38455629 None:intergenic 35.0%
ACTTAATGATGTGGAGGAAA+TGG + chr7.4:38454251-38454270 MS.gene055098:CDS 35.0%
ACTTCTTGAGAAAGACTAAG+GGG + chr7.4:38455062-38455081 MS.gene055098:intron 35.0%
AGGAAGAAAGATTGAACGAA+AGG + chr7.4:38454786-38454805 MS.gene055098:intron 35.0%
ATCAGTTGTTACTGAATGAG+AGG + chr7.4:38455309-38455328 MS.gene055098:intron 35.0%
ATGAATGGTACCCATATATG+GGG + chr7.4:38454668-38454687 MS.gene055098:intron 35.0%
ATGTGTTGAATGTTGCAAGA+AGG + chr7.4:38455524-38455543 MS.gene055098:CDS 35.0%
ATTTCCTCCACATCATTAAG+TGG - chr7.4:38454252-38454271 None:intergenic 35.0%
CAATGAATGGTACCCATATA+TGG + chr7.4:38454666-38454685 MS.gene055098:intron 35.0%
CAGAAATAACGTCACTTACA+AGG + chr7.4:38455550-38455569 MS.gene055098:CDS 35.0%
CATATGAACATCCCCATATA+TGG - chr7.4:38454682-38454701 None:intergenic 35.0%
CATATGATCTTAGGGTAATG+AGG + chr7.4:38454696-38454715 MS.gene055098:intron 35.0%
CTTCAATATGTGGTTTGAAG+AGG + chr7.4:38453630-38453649 MS.gene055098:intron 35.0%
GAGGAAATGGTCGTTAATAT+TGG + chr7.4:38454264-38454283 MS.gene055098:CDS 35.0%
GGGATGTTCATATGATCTTA+GGG + chr7.4:38454688-38454707 MS.gene055098:intron 35.0%
TAACCTCCATTAGGTTACTT+GGG - chr7.4:38453744-38453763 None:intergenic 35.0%
TACCATTCATTGCATTTCCA+TGG - chr7.4:38454658-38454677 None:intergenic 35.0%
TAGCATATCCTCCAGAAATA+GGG - chr7.4:38454137-38454156 None:intergenic 35.0%
TAGTTAGAATGGGAGAATGA+GGG - chr7.4:38455372-38455391 None:intergenic 35.0%
TATCAACATCACCAAGAAAG+AGG + chr7.4:38453531-38453550 MS.gene055098:CDS 35.0%
TCAGTTGTTACTGAATGAGA+GGG + chr7.4:38455310-38455329 MS.gene055098:intron 35.0%
TCTGTCACCATAAACGTTAA+TGG - chr7.4:38454165-38454184 None:intergenic 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.4:38453469-38453488 MS.gene055098:CDS 35.0%
TTAACCTCCATTAGGTTACT+TGG - chr7.4:38453745-38453764 None:intergenic 35.0%
TTAGTTAGAATGGGAGAATG+AGG - chr7.4:38455373-38455392 None:intergenic 35.0%
TTCCATGGAAATGCAATGAA+TGG + chr7.4:38454653-38454672 MS.gene055098:intron 35.0%
TTTAGTCCCAAGTAACCTAA+TGG + chr7.4:38453735-38453754 MS.gene055098:CDS 35.0%
TTTCCTCCACATCATTAAGT+GGG - chr7.4:38454251-38454270 None:intergenic 35.0%
! AACCAAATCTATGTTGATGG+TGG + chr7.4:38455605-38455624 MS.gene055098:CDS 35.0%
! ATTAGCCACAAGTTTTGCAA+TGG - chr7.4:38453082-38453101 None:intergenic 35.0%
! ATTTGATTTCTTGTGGTTGC+AGG + chr7.4:38454363-38454382 MS.gene055098:intron 35.0%
! CAAGGTTACCATTAGAGTTT+TGG + chr7.4:38452966-38452985 MS.gene055098:CDS 35.0%
! GATCTTGTTTATTGAAGCAG+AGG + chr7.4:38453834-38453853 MS.gene055098:CDS 35.0%
! TAGAGCACCATTAACGTTTA+TGG + chr7.4:38454155-38454174 MS.gene055098:CDS 35.0%
! TCTACCTTTTGCATCTTTAG+GGG - chr7.4:38454936-38454955 None:intergenic 35.0%
! TTTGATTTCTTGTGGTTGCA+GGG + chr7.4:38454364-38454383 MS.gene055098:intron 35.0%
!! AATATTGAAGCACTGAGCTT+TGG + chr7.4:38453108-38453127 MS.gene055098:CDS 35.0%
!! TACAAGGTATCGGTAATATC+TGG - chr7.4:38454065-38454084 None:intergenic 35.0%
!!! ATGTAGGATGAGGTTTTGTT+TGG - chr7.4:38454474-38454493 None:intergenic 35.0%
AAAGTTGAAGGTCAAGACCA+AGG + chr7.4:38455483-38455502 MS.gene055098:CDS 40.0%
AAGCTTGGAGTCAATGACAT+TGG + chr7.4:38453484-38453503 MS.gene055098:CDS 40.0%
AATGATGATACTGCTGGATG+TGG + chr7.4:38455423-38455442 MS.gene055098:CDS 40.0%
ACTAACCAATGAACTGGTTG+AGG - chr7.4:38454441-38454460 None:intergenic 40.0%
AGCATATCCTCCAGAAATAG+GGG - chr7.4:38454136-38454155 None:intergenic 40.0%
AGCTTCTTAACATTGCGCTT+AGG + chr7.4:38453054-38453073 MS.gene055098:CDS 40.0%
ATACCATCAATGGATGGCAT+TGG - chr7.4:38454204-38454223 None:intergenic 40.0%
ATATGTAACACTCCTCCCAA+GGG - chr7.4:38453898-38453917 None:intergenic 40.0%
ATCAATCCAAGAAACTCAGC+AGG + chr7.4:38453210-38453229 MS.gene055098:intron 40.0%
CACATTGTGTACCATCAATC+TGG - chr7.4:38455509-38455528 None:intergenic 40.0%
CATCCAGCAGTATCATCATT+AGG - chr7.4:38455423-38455442 None:intergenic 40.0%
CTAGCATATCCTCCAGAAAT+AGG - chr7.4:38454138-38454157 None:intergenic 40.0%
CTCAGCAAAACAAGTAGACA+AGG + chr7.4:38452948-38452967 MS.gene055098:CDS 40.0%
CTTGTCCACCAAAACTCTAA+TGG - chr7.4:38452977-38452996 None:intergenic 40.0%
GAGAACAAGACTTGCAGAAT+TGG + chr7.4:38453277-38453296 MS.gene055098:intron 40.0%
GATCCTAAATCCCCTATTTC+TGG + chr7.4:38454123-38454142 MS.gene055098:CDS 40.0%
GCTTCTTAACATTGCGCTTA+GGG + chr7.4:38453055-38453074 MS.gene055098:CDS 40.0%
GGGGATGTTCATATGATCTT+AGG + chr7.4:38454687-38454706 MS.gene055098:intron 40.0%
GTAACCACCTCTTATGTGTT+CGG + chr7.4:38454598-38454617 MS.gene055098:intron 40.0%
GTTACTACCGAACACATAAG+AGG - chr7.4:38454608-38454627 None:intergenic 40.0%
GTTGGCAATCAAGCATATTG+TGG - chr7.4:38455655-38455674 None:intergenic 40.0%
TATATGTGCATGTTCATGGC+AGG + chr7.4:38454870-38454889 MS.gene055098:intron 40.0%
TCAGACTGTATGGAAATGCT+TGG - chr7.4:38454033-38454052 None:intergenic 40.0%
! AGTTTTCTCACCTTTCCCTT+GGG + chr7.4:38453880-38453899 MS.gene055098:CDS 40.0%
! CTACCTTTTGCATCTTTAGG+GGG - chr7.4:38454935-38454954 None:intergenic 40.0%
! TAGTTTTCTCACCTTTCCCT+TGG + chr7.4:38453879-38453898 MS.gene055098:CDS 40.0%
! TCTATTTGCTGAGGCAGATA+AGG + chr7.4:38453011-38453030 MS.gene055098:CDS 40.0%
!! GGTTACCATTAGAGTTTTGG+TGG + chr7.4:38452969-38452988 MS.gene055098:CDS 40.0%
!! TGAGCTCAGAAAAGTGCTTA+AGG + chr7.4:38453977-38453996 MS.gene055098:CDS 40.0%
!!! CTTGTCTACTTGTTTTGCTG+AGG - chr7.4:38452950-38452969 None:intergenic 40.0%
AATAGATCCATGGTCACCCA+TGG - chr7.4:38455339-38455358 None:intergenic 45.0%
ACTACCGAACACATAAGAGG+TGG - chr7.4:38454605-38454624 None:intergenic 45.0%
ACTCCAATGCCATCCATTGA+TGG + chr7.4:38454198-38454217 MS.gene055098:CDS 45.0%
AGGGACCATTGCAAAACTTG+TGG + chr7.4:38453074-38453093 MS.gene055098:CDS 45.0%
AGTCCCAAGTAACCTAATGG+AGG + chr7.4:38453738-38453757 MS.gene055098:CDS 45.0%
ATTGGCCAGAAGGAGGTAAA+AGG + chr7.4:38454282-38454301 MS.gene055098:intron 45.0%
CAGCCTAATGATGATACTGC+TGG + chr7.4:38455417-38455436 MS.gene055098:intron 45.0%
CATATGTAACACTCCTCCCA+AGG - chr7.4:38453899-38453918 None:intergenic 45.0%
CCTCCAGAAATAGGGGATTT+AGG - chr7.4:38454129-38454148 None:intergenic 45.0%
CGTTAATATTGGCCAGAAGG+AGG + chr7.4:38454275-38454294 MS.gene055098:CDS 45.0%
CTTGTTCTCACAGCAGAAGT+AGG - chr7.4:38453266-38453285 None:intergenic 45.0%
GAACGTCCCACTTAATGATG+TGG + chr7.4:38454242-38454261 MS.gene055098:CDS 45.0%
GGTCGTTAATATTGGCCAGA+AGG + chr7.4:38454272-38454291 MS.gene055098:CDS 45.0%
GTTCGTGAGTTCAGACTGTA+TGG - chr7.4:38454043-38454062 None:intergenic 45.0%
GTTTATGGTGACAGACCAGT+TGG + chr7.4:38454170-38454189 MS.gene055098:CDS 45.0%
TAGAATGGGAGAATGAGGGA+TGG - chr7.4:38455368-38455387 None:intergenic 45.0%
TAGCCCCCTAAAGATGCAAA+AGG + chr7.4:38454929-38454948 MS.gene055098:CDS 45.0%
TCTATGGTCACAGACATGCA+AGG + chr7.4:38453179-38453198 MS.gene055098:intron 45.0%
TTGGCCAGAAGGAGGTAAAA+GGG + chr7.4:38454283-38454302 MS.gene055098:intron 45.0%
! AGATTGAACGAAAGGTGCGA+AGG + chr7.4:38454794-38454813 MS.gene055098:intron 45.0%
! GGAGTGTTACATATGCTCGA+AGG + chr7.4:38453904-38453923 MS.gene055098:CDS 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG - chr7.4:38453480-38453499 None:intergenic 45.0%
!! CCTAAATCCCCTATTTCTGG+AGG + chr7.4:38454126-38454145 MS.gene055098:CDS 45.0%
AACGGCCTCAACCAGTTCAT+TGG + chr7.4:38454433-38454452 MS.gene055098:CDS 50.0%
ACAGCAGAAGTAGGACTGGA+AGG - chr7.4:38453257-38453276 None:intergenic 50.0%
ACTGAATGAGAGGGAAGCCA+TGG + chr7.4:38455319-38455338 MS.gene055098:intron 50.0%
CAAGACCAAGGCCAGATTGA+TGG + chr7.4:38455495-38455514 MS.gene055098:CDS 50.0%
CGTCCCACTTAATGATGTGG+AGG + chr7.4:38454245-38454264 MS.gene055098:CDS 50.0%
CTGAATGAGAGGGAAGCCAT+GGG + chr7.4:38455320-38455339 MS.gene055098:intron 50.0%
GCATTGGAGTCACAACCAAC+TGG - chr7.4:38454188-38454207 None:intergenic 50.0%
GGCAGGAAGTAGATCTGTTC+AGG + chr7.4:38454887-38454906 MS.gene055098:intron 50.0%
GTGTACCATCAATCTGGCCT+TGG - chr7.4:38455503-38455522 None:intergenic 50.0%
TAACACTCCTCCCAAGGGAA+AGG - chr7.4:38453893-38453912 None:intergenic 50.0%
TCTCACAGCAGAAGTAGGAC+TGG - chr7.4:38453261-38453280 None:intergenic 50.0%
TGAGCACCTGCTGAGTTTCT+TGG - chr7.4:38453219-38453238 None:intergenic 50.0%
TTTCTCACCTTTCCCTTGGG+AGG + chr7.4:38453883-38453902 MS.gene055098:CDS 50.0%
! CAGTCCCTTTTACCTCCTTC+TGG - chr7.4:38454290-38454309 None:intergenic 50.0%
AGGGAAGCCATGGGTGACCA+TGG + chr7.4:38455329-38455348 MS.gene055098:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38452934 38455686 38452934 ID=MS.gene055098
chr7.4 mRNA 38452934 38455686 38452934 ID=MS.gene055098.t1;Parent=MS.gene055098
chr7.4 exon 38452934 38453184 38452934 ID=MS.gene055098.t1.exon1;Parent=MS.gene055098.t1
chr7.4 CDS 38452934 38453184 38452934 ID=cds.MS.gene055098.t1;Parent=MS.gene055098.t1
chr7.4 exon 38453327 38453552 38453327 ID=MS.gene055098.t1.exon2;Parent=MS.gene055098.t1
chr7.4 CDS 38453327 38453552 38453327 ID=cds.MS.gene055098.t1;Parent=MS.gene055098.t1
chr7.4 exon 38453652 38454296 38453652 ID=MS.gene055098.t1.exon3;Parent=MS.gene055098.t1
chr7.4 CDS 38453652 38454296 38453652 ID=cds.MS.gene055098.t1;Parent=MS.gene055098.t1
chr7.4 exon 38454385 38454454 38454385 ID=MS.gene055098.t1.exon4;Parent=MS.gene055098.t1
chr7.4 CDS 38454385 38454454 38454385 ID=cds.MS.gene055098.t1;Parent=MS.gene055098.t1
chr7.4 exon 38454892 38454950 38454892 ID=MS.gene055098.t1.exon5;Parent=MS.gene055098.t1
chr7.4 CDS 38454892 38454950 38454892 ID=cds.MS.gene055098.t1;Parent=MS.gene055098.t1
chr7.4 exon 38455420 38455686 38455420 ID=MS.gene055098.t1.exon6;Parent=MS.gene055098.t1
chr7.4 CDS 38455420 38455686 38455420 ID=cds.MS.gene055098.t1;Parent=MS.gene055098.t1
Gene Sequence

>MS.gene055098

ATGGCTGAAAATACCTCAGCAAAACAAGTAGACAAGGTTACCATTAGAGTTTTGGTGGACAAGAAGAAAAATAAAGTTCTATTTGCTGAGGCAGATAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTAACATTGCGCTTAGGGACCATTGCAAAACTTGTGGCTAATGACTCAAATATTGAAGCACTGAGCTTTGGCAGTATTAGTTCACTGTATCAAAGTGTGTCAGATCTTGATGAAAAATATCTATGGTCACAGACATGCAAGGAAATGCTTATCAATCCAAGAAACTCAGCAGGTGCTCATTGACAATACTAAAACCTTCCAGTCCTACTTCTGCTGTGAGAACAAGACTTGCAGAATTGGAAATAAATACTGTGTAAGTTTCTTCAGGAATCAGAAATGTATTTGTGGTAAGCTGTTGAACCGAGAAGAATTCCAGAATTTGAGTAATGAAATTGGTTTTGTTAACGAAATGTCGGCGTTTATCATATCTGATGAACTTTATGCTATGCCAAATGTTGTTACGACAACTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGGTGCTATTGATAAACAAACCGTTAATATCAACATCACCAAGAAAGAGGTATCTTTTCTTGTTCTGTGTTTATATGACATATTTTTTGTTGATTATTAGAATTATTGTTTTTTCTCTCACTAATTCTTCAATATGTGGTTTGAAGAGGTAGTTGATCTTCTCAAATTGTCTTTGGTCTCAAAAACTCCTCTGTCAGACTTTATATTTAAAAAGCAGCAGTCTGTTGAAATTTTAGTCCCAAGTAACCTAATGGAGGTTAATATTGGTAAAGAAAAGGAAGAATCTGACGAAATGGTTGTGAAAGTAGTGAGACGAAAATCAAATAAGCAGATCTTGTTTATTGAAGCAGAGGAAGATTTTGCTGATTTTGTTTTTAGTTTTCTCACCTTTCCCTTGGGAGGAGTGTTACATATGCTCGAAGGATTCTCTTCCTTAAGCTGCATTGATAATTTATATAAGAGTGTGACTGAATTGAGCTCAGAAAAGTGCTTAAGGTCACAGTATTTCAAAAACCTACTAACTAATCCAAGCATTTCCATACAGTCTGAACTCACGAACCAGATATTACCGATACCTTGTAACGATTATAAGGTAAGAAATATGTCAGTTAAATTTGTTGATCCTAAATCCCCTATTTCTGGAGGATATGCTAGAGCACCATTAACGTTTATGGTGACAGACCAGTTGGTTGTGACTCCAATGCCATCCATTGATGGTATTTCATATCTTGAAAGAATGAACGTCCCACTTAATGATGTGGAGGAAATGGTCGTTAATATTGGCCAGAAGGAGGTAAAAGGGACTGTTTTAGTCTTTCGTTTTAATATTTCTTGAATTAGATTCATAACAACTCACCATATTTGATTTCTTGTGGTTGCAGGGTCTCAGCATACTCAGAGCTTCATTGACCTCAAAATTTGCTTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATAGTATAAACCAAACAAAACCTCATCCTACATAATAATTATAACAAAAACGATATTGAAGTTCATCGAGAAATATCATCAAAAATAGTCACGTCGAACATGTCGCATGAACTTTTTTTAATTGAGCATATTTACTAGTAACCACCTCTTATGTGTTCGGTAGTAACCGACTTGTTATGTGTAGTACTAATTTTCCATGGAAATGCAATGAATGGTACCCATATATGGGGATGTTCATATGATCTTAGGGTAATGAGGAGTAATGACAGTTAATGTTGAGAAAATTGAGTAATTAAAAATGAACATAGAAAAAGAAGAGAAGTAAAGGAAGAAAGATTGAACGAAAGGTGCGAAGGAAAGAGAGTAAGAGTCATAAATAATTTTGAATAAGTACTAACTACTCCTTTATTATATGTGCATGTTCATGGCAGGAAGTAGATCTGTTCAGGCTAATTTGTCATCTAATGCTAGCCCCCTAAAGATGCAAAAGGTAGAAAAATGAAGCTTGTTATAACCATGTTTCTATTTTTGTGTTTGAAATATGTGGTTTTGTTTAAGTGATTTGAATGATCACAGTTTATTTTGTATTCTGTCATGATTTACTTCTTGAGAAAGACTAAGGGGAGTTTGTTCCTCTATTGTCATGTCTTATTAGTGTTTCGTGTTGTTTTCCTTTTTACCAAATTCATGTATTTTTATCATATAGATTTTGCCACCTCAGTTATATAATTATTGTTATTTATGTGACAAGGCTAAAGATATTATCGATCAATAGAAAAGCACTTGACAAAAGTCGATGCAATTTAAATTACTTTACTTTTGTAAAATGTCGTTCTACCAGATATTGAATCAGTTGTTACTGAATGAGAGGGAAGCCATGGGTGACCATGGATCTATTAAACTTCCATCCCTCATTCTCCCATTCTAACTAATAACTTGTTTATTACATCTGTGTTCAGCCTAATGATGATACTGCTGGATGTGGCTTCTTTAGTTGTCCTTCAGACAACAAAAAATCAACAAAAGTTGAAGGTCAAGACCAAGGCCAGATTGATGGTACACAATGTGTTGAATGTTGCAAGAAGGATACAGAAATAACGTCACTTACAAGGAAGTTAACCAAGATTAAGAGCAATGAAAAATCAACCAAATCTATGTTGATGGTGGTTATTGTTATTTGTTTGTTCATCACCACAATATGCTTGATTGCCAACAATTTAAAGTGA
Protein sequence

>MS.gene055098.t1

MAENTSAKQVDKVTIRVLVDKKKNKVLFAEADKDFVDVLLSFLTLRLGTIAKLVANDSNIEALSFGSISSLYQSVSDLDEKYLWNQKCICGKLLNREEFQNLSNEIGFVNEMSAFIISDELYAMPNVVTTTLNLLQKLGVNDIGAIDKQTVNINITKKEVVDLLKLSLVSKTPLSDFIFKKQQSVEILVPSNLMEVNIGKEKEESDEMVVKVVRRKSNKQILFIEAEEDFADFVFSFLTFPLGGVLHMLEGFSSLSCIDNLYKSVTELSSEKCLRSQYFKNLLTNPSISIQSELTNQILPIPCNDYKVRNMSVKFVDPKSPISGGYARAPLTFMVTDQLVVTPMPSIDGISYLERMNVPLNDVEEMVVNIGQKEGLSILRASLTSKFALTNGLNQFIGSRSVQANLSSNASPLKMQKPNDDTAGCGFFSCPSDNKKSTKVEGQDQGQIDGTQCVECCKKDTEITSLTRKLTKIKSNEKSTKSMLMVVIVICLFITTICLIANNLK