AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78862

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78862.t1 MTR_3g007740 75.169 443 33 4 14 379 1 443 0.0 636
MS.gene78862.t1 MTR_7g063840 45.702 477 139 14 14 379 1 468 9.81e-107 322
MS.gene78862.t1 MTR_7g062300 44.813 482 139 17 12 377 2 472 2.41e-104 316
MS.gene78862.t1 MTR_7g063920 45.843 445 148 12 13 379 2 431 5.53e-103 311
MS.gene78862.t1 MTR_7g063820 42.708 480 151 11 18 379 6 479 9.29e-100 304
MS.gene78862.t1 MTR_7g063660 42.706 473 151 12 20 379 7 472 1.48e-95 293
MS.gene78862.t1 MTR_7g063670 56.923 260 74 4 146 379 205 452 2.75e-88 274
MS.gene78862.t1 MTR_7g063670 69.048 126 34 2 14 134 4 129 1.35e-48 171
MS.gene78862.t1 MTR_7g063880 41.901 463 172 12 13 379 2 463 2.58e-84 264
MS.gene78862.t1 MTR_7g066480 36.490 433 174 12 22 379 16 422 4.68e-66 216
MS.gene78862.t1 MTR_7g062280 46.377 276 102 8 143 379 218 486 1.54e-63 211
MS.gene78862.t1 MTR_7g062280 57.143 133 43 2 18 137 6 137 5.03e-39 145
MS.gene78862.t1 MTR_7g066490 35.714 420 181 10 22 379 16 408 3.82e-61 202
MS.gene78862.t1 MTR_7g012680 35.760 467 177 18 12 378 2 445 6.33e-59 197
MS.gene78862.t1 MTR_3g065200 36.364 418 180 12 22 365 3 408 1.55e-55 189
MS.gene78862.t1 MTR_7g066580 34.222 450 186 13 28 375 1 442 5.52e-55 187
MS.gene78862.t1 MTR_7g066310 35.825 388 205 13 21 376 6 381 8.35e-52 178
MS.gene78862.t1 MTR_7g100420 35.516 397 174 10 20 374 37 393 7.71e-49 170
MS.gene78862.t1 MTR_7g063830 40.299 268 91 5 146 379 207 439 5.76e-48 169
MS.gene78862.t1 MTR_7g063830 61.947 113 31 1 18 118 6 118 1.69e-38 143
MS.gene78862.t1 MTR_7g063900 44.014 284 102 11 146 379 207 483 1.73e-46 166
MS.gene78862.t1 MTR_7g063900 64.957 117 29 1 15 119 3 119 5.07e-38 142
MS.gene78862.t1 MTR_7g066340 31.839 446 213 16 21 378 11 453 6.88e-44 158
MS.gene78862.t1 MTR_7g063690 45.798 238 86 10 13 224 2 222 9.58e-43 149
MS.gene78862.t1 MTR_2g029400 31.713 432 192 14 12 368 2 405 6.29e-41 149
MS.gene78862.t1 MTR_7g063720 39.918 243 95 6 171 379 2 227 3.31e-40 142
MS.gene78862.t1 MTR_7g063850 38.889 252 106 8 173 379 35 283 2.99e-39 142
MS.gene78862.t1 MTR_7g063890 42.160 287 109 8 143 379 220 499 1.57e-38 144
MS.gene78862.t1 MTR_7g063890 60.833 120 35 1 14 121 19 138 1.90e-35 136
MS.gene78862.t1 MTR_1g014060 32.648 389 200 12 35 378 13 384 1.04e-36 137
MS.gene78862.t1 MTR_7g066410 34.615 286 129 8 148 379 232 513 1.66e-36 139
MS.gene78862.t1 MTR_7g066410 46.154 117 51 1 15 119 3 119 7.43e-24 103
MS.gene78862.t1 MTR_7g066570 35.959 292 127 9 138 378 198 480 9.44e-36 137
MS.gene78862.t1 MTR_7g066570 53.659 123 40 2 14 119 1 123 7.41e-29 118
MS.gene78862.t1 MTR_7g062270 52.899 138 48 4 14 137 1 135 7.54e-35 132
MS.gene78862.t1 MTR_7g066430 35.192 287 131 9 143 378 203 485 2.08e-33 130
MS.gene78862.t1 MTR_7g066430 43.182 132 58 3 22 139 4 132 2.38e-22 98.6
MS.gene78862.t1 MTR_4g017470 28.421 475 227 15 14 379 1 471 6.90e-32 125
MS.gene78862.t1 MTR_7g066260 34.815 270 116 8 144 376 214 460 4.62e-31 123
MS.gene78862.t1 MTR_7g066260 53.153 111 39 2 21 119 14 123 3.47e-26 109
MS.gene78862.t1 MTR_7g063760 72.059 68 19 0 312 379 1 68 2.46e-29 108
MS.gene78862.t1 MTR_7g066400 33.730 252 135 5 148 374 189 433 2.09e-28 115
MS.gene78862.t1 MTR_7g066400 37.500 128 52 2 12 127 2 113 5.45e-13 70.5
MS.gene78862.t1 MTR_4g019310 33.808 281 124 9 148 378 222 490 5.13e-27 112
MS.gene78862.t1 MTR_4g019310 44.262 122 48 3 20 121 6 127 3.93e-19 89.4
MS.gene78862.t1 MTR_4g017610 28.662 471 204 18 25 374 16 475 1.08e-25 108
MS.gene78862.t1 MTR_7g066680 31.210 314 123 8 145 374 30 334 1.09e-25 106
MS.gene78862.t1 MTR_7g058700 34.538 249 96 6 148 379 724 922 3.34e-25 108
MS.gene78862.t1 MTR_7g058700 56.180 89 37 1 31 119 528 614 5.79e-23 101
MS.gene78862.t1 MTR_7g066350 51.261 119 45 2 14 119 1 119 5.25e-25 106
MS.gene78862.t1 MTR_7g066350 33.468 248 132 6 148 374 210 445 7.57e-20 91.3
MS.gene78862.t1 MTR_7g058710 30.556 288 138 7 144 379 201 478 2.22e-23 101
MS.gene78862.t1 MTR_7g058710 45.045 111 37 2 21 119 11 109 1.39e-19 90.5
MS.gene78862.t1 MTR_7g066290 39.884 173 81 5 10 166 1 166 5.84e-23 100
MS.gene78862.t1 MTR_7g066290 37.405 262 120 12 133 378 200 433 4.54e-21 94.4
MS.gene78862.t1 MTR_7g066360 48.333 120 47 2 13 117 2 121 4.41e-22 97.8
MS.gene78862.t1 MTR_7g066360 33.600 250 135 7 144 375 210 446 4.60e-20 92.0
MS.gene78862.t1 MTR_1g041315 33.735 249 124 8 140 362 218 451 1.28e-21 96.7
MS.gene78862.t1 MTR_1g041315 45.000 120 53 2 12 119 5 123 6.51e-21 94.4
MS.gene78862.t1 MTR_4g017410 29.455 275 148 8 143 379 219 485 2.77e-21 95.5
MS.gene78862.t1 MTR_4g017410 36.434 129 59 3 14 119 1 129 1.36e-12 69.3
MS.gene78862.t1 MTR_8g023240 23.438 448 239 15 23 370 38 481 1.47e-19 90.9
MS.gene78862.t1 MTR_7g063870 67.273 55 18 0 18 72 27 81 4.44e-16 77.8
MS.gene78862.t1 MTR_7g066280 50.000 74 36 1 305 378 318 390 8.02e-13 69.7
MS.gene78862.t1 MTR_7g063750 57.407 54 23 0 302 355 14 67 8.71e-13 67.4
MS.gene78862.t1 MTR_1g115440 26.339 224 114 5 197 371 11 232 1.51e-12 67.0
MS.gene78862.t1 MTR_4g017830 36.719 128 59 4 14 119 1 128 4.27e-12 67.8
MS.gene78862.t1 MTR_2g067310 37.121 132 63 6 7 122 23 150 4.61e-12 65.9
MS.gene78862.t1 MTR_7g066390 51.389 72 34 1 305 376 50 120 5.52e-12 63.9
MS.gene78862.t1 MTR_4g019330 30.178 169 99 4 211 378 32 182 6.62e-12 64.3
MS.gene78862.t1 MTR_4g017440 36.975 119 51 2 23 117 15 133 8.22e-12 67.0
MS.gene78862.t1 MTR_1g115455 46.667 75 35 1 14 88 1 70 9.85e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78862.t1 AT3G09110 41.007 139 68 3 22 146 9 147 9.96e-23 98.2
MS.gene78862.t1 AT3G09120 45.217 115 50 2 21 123 5 118 1.04e-21 94.7
MS.gene78862.t1 AT5G01120 42.202 109 51 1 23 119 10 118 4.65e-20 92.0
MS.gene78862.t1 AT5G01150 41.727 139 65 3 14 140 1 135 9.84e-20 90.9
MS.gene78862.t1 AT5G43240 42.342 111 52 1 23 121 10 120 1.30e-19 90.9
MS.gene78862.t1 AT5G43240 42.342 111 52 1 23 121 10 120 1.30e-19 90.9
MS.gene78862.t1 AT5G43240 42.342 111 52 1 23 121 10 120 1.30e-19 90.9
MS.gene78862.t1 AT3G09140 39.437 142 68 4 14 140 1 139 1.58e-18 87.4
MS.gene78862.t1 AT3G09140 39.437 142 68 4 14 140 1 139 1.86e-18 87.4
MS.gene78862.t1 AT5G01130 30.242 248 149 8 148 378 204 444 1.95e-17 84.0
MS.gene78862.t1 AT5G01130 48.864 88 42 1 14 101 1 85 2.59e-17 83.6
MS.gene78862.t1 AT5G01140 26.792 265 155 8 148 378 192 451 1.76e-16 81.3
MS.gene78862.t1 AT5G37320 40.179 112 54 2 23 121 10 121 2.44e-16 80.9

Find 58 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATCACAAATGTATT+TGG 0.202920 3.1:-3521973 MS.gene78862:CDS
CAAAACTCCTCTTGATGATT+TGG 0.207607 3.1:-3521883 MS.gene78862:CDS
TTAGTACCTATGCTCAAATA+AGG 0.230784 3.1:+3522862 None:intergenic
AAGCCTGTTCTTTGCTTCTT+TGG 0.246726 3.1:+3522148 None:intergenic
GCAGAGTTACAGCATATTAA+AGG 0.249038 3.1:-3521720 MS.gene78862:intron
TGCAAATATAAAGACGAAAT+TGG 0.271766 3.1:+3521915 None:intergenic
GCAAGTGTCTTTGAAACTTC+TGG 0.305904 3.1:-3523181 MS.gene78862:CDS
TATCAAAGTGTCGAAAATAT+TGG 0.330799 3.1:-3523000 MS.gene78862:CDS
TTCAGCAAATAAAACTTTGT+TGG 0.347611 3.1:+3523146 None:intergenic
TGTTCAGAAAGATTCAAATA+TGG 0.350621 3.1:-3523055 MS.gene78862:CDS
ATCATTGATCGCTCAATAGA+TGG 0.350824 3.1:+3522427 None:intergenic
TCTTCGGATGAATTATTAAT+CGG 0.375084 3.1:+3522970 None:intergenic
TTTACAAAAGTGATGAAGAT+TGG 0.383530 3.1:-3522049 MS.gene78862:CDS
GCAATGATGACCATGATCTT+TGG 0.387422 3.1:+3522885 None:intergenic
ATCACAAATGTATTTGGTTA+CGG 0.406003 3.1:-3521967 MS.gene78862:CDS
GAACACATGAAGTAATTTGT+AGG 0.406683 3.1:+3522907 None:intergenic
TAGTACCTATGCTCAAATAA+GGG 0.412015 3.1:+3522863 None:intergenic
GAGAGTGCTGCAATAATCTT+CGG 0.419427 3.1:+3522954 None:intergenic
AGCTTCTTAACCTTACCATT+AGG 0.423122 3.1:-3523093 MS.gene78862:CDS
AACTCCTCTTGATGATTTGG+AGG 0.435595 3.1:-3521880 MS.gene78862:CDS
GAAAGATTCAAATATGGAAC+CGG 0.438520 3.1:-3523049 MS.gene78862:CDS
GTATTTGGTTACGGATGATC+TGG 0.438684 3.1:-3521958 MS.gene78862:CDS
AATATGGAACCGGTTACAAT+TGG 0.442256 3.1:-3523039 MS.gene78862:CDS
TTGAGACAACCAATTGTAAC+CGG 0.446678 3.1:+3523030 None:intergenic
CTTCCAAAGAAGCAAAGAAC+AGG 0.450327 3.1:-3522151 MS.gene78862:CDS
AGTCTTGCAATGGTACCTAA+TGG 0.455693 3.1:+3523078 None:intergenic
TTTCTAACCTTTCCACTTGG+TGG 0.456804 3.1:-3522262 MS.gene78862:CDS
CAAATCGGTTAGAGGTGTCT+TGG 0.469566 3.1:+3522465 None:intergenic
ACATGAATAATTCTGTCATC+AGG 0.482964 3.1:+3522077 None:intergenic
TTCATGTGTTCCAAAGATCA+TGG 0.483879 3.1:-3522895 MS.gene78862:CDS
CATTGCCCTTATTTGAGCAT+AGG 0.493198 3.1:-3522868 MS.gene78862:intron
ACAATATATTGTATGCTCTA+GGG 0.496883 3.1:-3522315 MS.gene78862:CDS
TCAACATCTGCTCTCACAAA+TGG 0.498033 3.1:-3521686 MS.gene78862:CDS
GTGATGAAGATTGGAGTGGT+GGG 0.499979 3.1:-3522040 MS.gene78862:CDS
AACACATGAAGTAATTTGTA+GGG 0.515631 3.1:+3522908 None:intergenic
GACAATATATTGTATGCTCT+AGG 0.518112 3.1:-3522316 MS.gene78862:CDS
GATGAAGATTGGAGTGGTGG+GGG 0.518998 3.1:-3522038 MS.gene78862:CDS
ATGGAACTAGTTACAGATGA+AGG 0.524395 3.1:-3522002 MS.gene78862:CDS
TCGTTTGATAGCTGCTGCCA+TGG 0.525868 3.1:-3523223 MS.gene78862:CDS
TGCAATGGTACCTAATGGTA+AGG 0.528641 3.1:+3523083 None:intergenic
CAATATATTGTATGCTCTAG+GGG 0.541114 3.1:-3522314 MS.gene78862:CDS
AGTGATGAAGATTGGAGTGG+TGG 0.550802 3.1:-3522041 MS.gene78862:CDS
ATCCAATAACGTGTGATCGA+TGG 0.554049 3.1:+3522728 None:intergenic
TGATGAAGATTGGAGTGGTG+GGG 0.563527 3.1:-3522039 MS.gene78862:CDS
TCAAGTCACCCTGAAGTTGG+TGG 0.591317 3.1:-3522353 MS.gene78862:CDS
TTTCTGAACAAGTCTTGCAA+TGG 0.592660 3.1:+3523068 None:intergenic
TAAAACTCCACCAAGTGGAA+AGG 0.598205 3.1:+3522255 None:intergenic
TAGAGGTGTCTTGGAGAGCA+AGG 0.603942 3.1:+3522474 None:intergenic
TGTTCAAGTCACCCTGAAGT+TGG 0.609924 3.1:-3522356 MS.gene78862:CDS
CTACCTAAAACTCCACCAAG+TGG 0.611826 3.1:+3522250 None:intergenic
ATATATTGTATGCTCTAGGG+GGG 0.624648 3.1:-3522312 MS.gene78862:CDS
TGTCACTATTGGCGTCGACG+AGG 0.634204 3.1:-3521850 MS.gene78862:intron
TATATTGTATGCTCTAGGGG+GGG 0.646973 3.1:-3522311 MS.gene78862:CDS
AACGTGTGATCGATGGAGTG+AGG 0.652725 3.1:+3522735 None:intergenic
AATATATTGTATGCTCTAGG+GGG 0.653820 3.1:-3522313 MS.gene78862:CDS
GACGAAATTGGAGACAACCA+TGG 0.679732 3.1:+3521927 None:intergenic
ATGATCTGGTCATAGAACCA+TGG 0.688186 3.1:-3521944 MS.gene78862:CDS
AAAAGTGATGAAGATTGGAG+TGG 0.722678 3.1:-3522044 MS.gene78862:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGGTACTAAAAATATTTA+CGG - chr3.1:3522057-3522076 MS.gene78862:CDS 15.0%
!!! ACTATATGTATTTTTACTAT+GGG - chr3.1:3523121-3523140 MS.gene78862:CDS 15.0%
!! AGTAAAAATACATATAGTGT+AGG + chr3.1:3523119-3523138 None:intergenic 20.0%
!! GAAAAATAAAAGTTCAAAAG+TGG + chr3.1:3522348-3522367 None:intergenic 20.0%
!! GAATAATTACCTAGTATTAA+TGG - chr3.1:3522689-3522708 MS.gene78862:intron 20.0%
!!! CACTATATGTATTTTTACTA+TGG - chr3.1:3523120-3523139 MS.gene78862:CDS 20.0%
! ACAATATATTGTATGCTCTA+GGG - chr3.1:3522592-3522611 MS.gene78862:intron 25.0%
! ATCACAAATGTATTTGGTTA+CGG - chr3.1:3522940-3522959 MS.gene78862:CDS 25.0%
! CAAAAGATCACAAATGTATT+TGG - chr3.1:3522934-3522953 MS.gene78862:CDS 25.0%
! GAAACTAAGAACAATGATTT+AGG + chr3.1:3522305-3522324 None:intergenic 25.0%
! GTACTAAAAATATTTACGGT+AGG - chr3.1:3522061-3522080 MS.gene78862:CDS 25.0%
! TCTTCGGATGAATTATTAAT+CGG + chr3.1:3521940-3521959 None:intergenic 25.0%
! TGCAAATATAAAGACGAAAT+TGG + chr3.1:3522995-3523014 None:intergenic 25.0%
! TGTTCAGAAAGATTCAAATA+TGG - chr3.1:3521852-3521871 MS.gene78862:CDS 25.0%
! TTCAGCAAATAAAACTTTGT+TGG + chr3.1:3521764-3521783 None:intergenic 25.0%
! TTTACAAAAGTGATGAAGAT+TGG - chr3.1:3522858-3522877 MS.gene78862:intron 25.0%
! TTTCTTTCCCAAAAACAAAT+CGG + chr3.1:3522460-3522479 None:intergenic 25.0%
!! AACACATGAAGTAATTTGTA+GGG + chr3.1:3522002-3522021 None:intergenic 25.0%
!!! TATCAAAGTGTCGAAAATAT+TGG - chr3.1:3521907-3521926 MS.gene78862:CDS 25.0%
AAAAATATTTACGGTAGGTG+TGG - chr3.1:3522066-3522085 MS.gene78862:CDS 30.0%
AAAATATTTACGGTAGGTGT+GGG - chr3.1:3522067-3522086 MS.gene78862:CDS 30.0%
AATGACTGTCAATTTCACTA+AGG - chr3.1:3522246-3522265 MS.gene78862:CDS 30.0%
ACATGAATAATTCTGTCATC+AGG + chr3.1:3522833-3522852 None:intergenic 30.0%
CAATATATTGTATGCTCTAG+GGG - chr3.1:3522593-3522612 MS.gene78862:intron 30.0%
GAAAGATTCAAATATGGAAC+CGG - chr3.1:3521858-3521877 MS.gene78862:CDS 30.0%
GACAATATATTGTATGCTCT+AGG - chr3.1:3522591-3522610 MS.gene78862:intron 30.0%
GATTAGTACTAATTCTGTAC+AGG - chr3.1:3522389-3522408 MS.gene78862:CDS 30.0%
TACTAATTCTGTACAGGTAT+TGG - chr3.1:3522395-3522414 MS.gene78862:CDS 30.0%
TAGTACCTATGCTCAAATAA+GGG + chr3.1:3522047-3522066 None:intergenic 30.0%
TGTCAATTTCACTAAGGAAA+AGG - chr3.1:3522252-3522271 MS.gene78862:CDS 30.0%
TTAGTACCTATGCTCAAATA+AGG + chr3.1:3522048-3522067 None:intergenic 30.0%
TTGTGCAATCCATTAATACT+AGG + chr3.1:3522701-3522720 None:intergenic 30.0%
! AATATATTGTATGCTCTAGG+GGG - chr3.1:3522594-3522613 MS.gene78862:intron 30.0%
! GAACACATGAAGTAATTTGT+AGG + chr3.1:3522003-3522022 None:intergenic 30.0%
!! TTGTGCAATGGATTTGTTAA+AGG - chr3.1:3522123-3522142 MS.gene78862:CDS 30.0%
!!! AAAGTTTTATTTGCTGAAGC+AGG - chr3.1:3521766-3521785 MS.gene78862:intron 30.0%
AAAAGTGATGAAGATTGGAG+TGG - chr3.1:3522863-3522882 MS.gene78862:intron 35.0%
AATATGGAACCGGTTACAAT+TGG - chr3.1:3521868-3521887 MS.gene78862:CDS 35.0%
AGCTTCTTAACCTTACCATT+AGG - chr3.1:3521814-3521833 MS.gene78862:intron 35.0%
ATCATTGATCGCTCAATAGA+TGG + chr3.1:3522483-3522502 None:intergenic 35.0%
ATGGAACTAGTTACAGATGA+AGG - chr3.1:3522905-3522924 MS.gene78862:CDS 35.0%
ATTGGATCTGCTCAAGAATT+TGG - chr3.1:3522195-3522214 MS.gene78862:intron 35.0%
CTCAATTTGAAAAACAGCCA+TGG + chr3.1:3521704-3521723 None:intergenic 35.0%
GAGGAAAAAGTTGTCACTAT+TGG - chr3.1:3523046-3523065 MS.gene78862:CDS 35.0%
GCAGAGTTACAGCATATTAA+AGG - chr3.1:3523187-3523206 MS.gene78862:CDS 35.0%
TTCATGTGTTCCAAAGATCA+TGG - chr3.1:3522012-3522031 MS.gene78862:CDS 35.0%
TTGAGACAACCAATTGTAAC+CGG + chr3.1:3521880-3521899 None:intergenic 35.0%
TTGGATCTGCTCAAGAATTT+GGG - chr3.1:3522196-3522215 MS.gene78862:intron 35.0%
TTTCTGAACAAGTCTTGCAA+TGG + chr3.1:3521842-3521861 None:intergenic 35.0%
! ATTTTCTTACCACCAACTTC+AGG + chr3.1:3522566-3522585 None:intergenic 35.0%
! CAAAACTCCTCTTGATGATT+TGG - chr3.1:3523024-3523043 MS.gene78862:CDS 35.0%
! GATTTTCTAACCTTTCCACT+TGG - chr3.1:3522642-3522661 MS.gene78862:intron 35.0%
! TTTTCCTCCAAATCATCAAG+AGG + chr3.1:3523034-3523053 None:intergenic 35.0%
! TTTTCTTACCACCAACTTCA+GGG + chr3.1:3522565-3522584 None:intergenic 35.0%
!! ATATATTGTATGCTCTAGGG+GGG - chr3.1:3522595-3522614 MS.gene78862:intron 35.0%
!!! ACCTCTAACCGATTTGTTTT+TGG - chr3.1:3522449-3522468 MS.gene78862:CDS 35.0%
!!! CATGGCTGTTTTTCAAATTG+AGG - chr3.1:3521702-3521721 MS.gene78862:CDS 35.0%
!!! CCTCTAACCGATTTGTTTTT+GGG - chr3.1:3522450-3522469 MS.gene78862:CDS 35.0%
!!! GAGTTTTAGGTAGGTTACAA+GGG - chr3.1:3522667-3522686 MS.gene78862:intron 35.0%
!!! TGGGGGAACTTTTTCAAAAA+TGG - chr3.1:3522886-3522905 MS.gene78862:CDS 35.0%
AAGCCTGTTCTTTGCTTCTT+TGG + chr3.1:3522762-3522781 None:intergenic 40.0%
AGTCTTGCAATGGTACCTAA+TGG + chr3.1:3521832-3521851 None:intergenic 40.0%
ATCCAATAACGTGTGATCGA+TGG + chr3.1:3522182-3522201 None:intergenic 40.0%
ATGATCTGGTCATAGAACCA+TGG - chr3.1:3522963-3522982 MS.gene78862:CDS 40.0%
CCCAAAAACAAATCGGTTAG+AGG + chr3.1:3522453-3522472 None:intergenic 40.0%
CTTCCAAAGAAGCAAAGAAC+AGG - chr3.1:3522756-3522775 MS.gene78862:CDS 40.0%
GCAATGATGACCATGATCTT+TGG + chr3.1:3522025-3522044 None:intergenic 40.0%
GTATTTGGTTACGGATGATC+TGG - chr3.1:3522949-3522968 MS.gene78862:CDS 40.0%
TAAAACTCCACCAAGTGGAA+AGG + chr3.1:3522655-3522674 None:intergenic 40.0%
TCAACATCTGCTCTCACAAA+TGG - chr3.1:3523221-3523240 MS.gene78862:CDS 40.0%
TGCAATGGTACCTAATGGTA+AGG + chr3.1:3521827-3521846 None:intergenic 40.0%
TTTCTAACCTTTCCACTTGG+TGG - chr3.1:3522645-3522664 MS.gene78862:intron 40.0%
! AACTCCTCTTGATGATTTGG+AGG - chr3.1:3523027-3523046 MS.gene78862:CDS 40.0%
! CATTGCCCTTATTTGAGCAT+AGG - chr3.1:3522039-3522058 MS.gene78862:CDS 40.0%
! TGAAGCAGGCAAAGATTTTG+TGG - chr3.1:3521780-3521799 MS.gene78862:intron 40.0%
!! GAGAGTGCTGCAATAATCTT+CGG + chr3.1:3521956-3521975 None:intergenic 40.0%
!! GCAAGTGTCTTTGAAACTTC+TGG - chr3.1:3521726-3521745 MS.gene78862:intron 40.0%
!! TATATTGTATGCTCTAGGGG+GGG - chr3.1:3522596-3522615 MS.gene78862:intron 40.0%
!! TTTCCACTTGGTGGAGTTTT+AGG - chr3.1:3522654-3522673 MS.gene78862:intron 40.0%
!!! GGAGTTTTAGGTAGGTTACA+AGG - chr3.1:3522666-3522685 MS.gene78862:intron 40.0%
ACTGTGCTAGCGAAACTGAA+CGG + chr3.1:3522104-3522123 None:intergenic 45.0%
AGTGATGAAGATTGGAGTGG+TGG - chr3.1:3522866-3522885 MS.gene78862:intron 45.0%
CTACCTAAAACTCCACCAAG+TGG + chr3.1:3522660-3522679 None:intergenic 45.0%
CTCCATCGATCACACGTTAT+TGG - chr3.1:3522177-3522196 MS.gene78862:intron 45.0%
GACGAAATTGGAGACAACCA+TGG + chr3.1:3522983-3523002 None:intergenic 45.0%
GTGATGAAGATTGGAGTGGT+GGG - chr3.1:3522867-3522886 MS.gene78862:intron 45.0%
TGATGAAGATTGGAGTGGTG+GGG - chr3.1:3522868-3522887 MS.gene78862:intron 45.0%
TGTTCAAGTCACCCTGAAGT+TGG - chr3.1:3522551-3522570 MS.gene78862:intron 45.0%
!! CAAATCGGTTAGAGGTGTCT+TGG + chr3.1:3522445-3522464 None:intergenic 45.0%
!!! CACTTGGTGGAGTTTTAGGT+AGG - chr3.1:3522658-3522677 MS.gene78862:intron 45.0%
AACGTGTGATCGATGGAGTG+AGG + chr3.1:3522175-3522194 None:intergenic 50.0%
GATGAAGATTGGAGTGGTGG+GGG - chr3.1:3522869-3522888 MS.gene78862:CDS 50.0%
TCAAGTCACCCTGAAGTTGG+TGG - chr3.1:3522554-3522573 MS.gene78862:intron 50.0%
TCGCTAGCACAGTTGTGCAA+TGG - chr3.1:3522111-3522130 MS.gene78862:CDS 50.0%
! TCGTTTGATAGCTGCTGCCA+TGG - chr3.1:3521684-3521703 MS.gene78862:CDS 50.0%
!! TAGAGGTGTCTTGGAGAGCA+AGG + chr3.1:3522436-3522455 None:intergenic 50.0%
!! TGTCACTATTGGCGTCGACG+AGG - chr3.1:3523057-3523076 MS.gene78862:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 3521664 3523265 3521664 ID=MS.gene78862
chr3.1 mRNA 3521664 3523265 3521664 ID=MS.gene78862.t1;Parent=MS.gene78862
chr3.1 exon 3522869 3523265 3522869 ID=MS.gene78862.t1.exon1;Parent=MS.gene78862.t1
chr3.1 CDS 3522869 3523265 3522869 ID=cds.MS.gene78862.t1;Parent=MS.gene78862.t1
chr3.1 exon 3522738 3522784 3522738 ID=MS.gene78862.t1.exon2;Parent=MS.gene78862.t1
chr3.1 CDS 3522738 3522784 3522738 ID=cds.MS.gene78862.t1;Parent=MS.gene78862.t1
chr3.1 exon 3522228 3522518 3522228 ID=MS.gene78862.t1.exon3;Parent=MS.gene78862.t1
chr3.1 CDS 3522228 3522518 3522228 ID=cds.MS.gene78862.t1;Parent=MS.gene78862.t1
chr3.1 exon 3521851 3522180 3521851 ID=MS.gene78862.t1.exon4;Parent=MS.gene78862.t1
chr3.1 CDS 3521851 3522180 3521851 ID=cds.MS.gene78862.t1;Parent=MS.gene78862.t1
chr3.1 exon 3521664 3521738 3521664 ID=MS.gene78862.t1.exon5;Parent=MS.gene78862.t1
chr3.1 CDS 3521664 3521738 3521664 ID=cds.MS.gene78862.t1;Parent=MS.gene78862.t1
Gene Sequence

>MS.gene78862

ATGGTTCTTTCTTTTGTTTCTCGTTTGATAGCTGCTGCCATGGCTGTTTTTCAAATTGAGGAGCAAGTGTCTTTGAAACTTCTGGTAAACACAGAAACCAACAAAGTTTTATTTGCTGAAGCAGGCAAAGATTTTGTGGACGTTCTGTGTAGCTTCTTAACCTTACCATTAGGTACCATTGCAAGACTTGTTCAGAAAGATTCAAATATGGAACCGGTTACAATTGGTTGTCTCAACTTTCTCTATCAAAGTGTCGAAAATATTGGATTGTTACCGATTAATAATTCATCCGAAGATTATTGCAGCACTCTCAAAATTAATATTGATGATACTGTCCCTACAAATTACTTCATGTGTTCCAAAGATCATGGTCATCATTGCCCTTATTTGAGCATAGGTACTAAAAATATTTACGGTAGGTGTGGGAATCGTTTGAACCGTTCAGTTTCGCTAGCACAGTTGTGCAATGGATTTGTTAAAGGTGCTACGACTTTTGTCAATTGTCTCGCCTCACTCCATCGATCACACGTTATTGGATCTGCTCAAGAATTTGGGAATGAAAAACACAAGTTCAGTAAAAGAAATGACTGTCAATTTCACTAAGGAAAAGGTTTTATATTTGCAATTCATTTTAGTTTCCTAAATCATTGTTCTTAGTTTCTTTGTACTTGCTCTTATTCGCCACTTTTGAACTTTTATTTTTCAATTCACTACTGTCTTTAATTGATTAGTACTAATTCTGTACAGGTATTGGATCTGCTTAAGTGTTCCTTGCTCTCCAAGACACCTCTAACCGATTTGTTTTTGGGAAAGAAACCATCTATTGAGCGATCAATGATGCGATCAATGATTTTCTCTAGTGATGTTGAAAACATTTTTTGTAGTGATGTTCAAGTCACCCTGAAGTTGGTGGTAAGAAAATCAGATGACAATATATTGTATGCTCTAGGGGGGGATGATTTTGCAAACATGATTATAGATTTTCTAACCTTTCCACTTGGTGGAGTTTTAGGTAGGTTACAAGGGAATAATTACCTAGTATTAATGGATTGCACAAGAGCTTAACTGCTTTAAGTGTAGACAAGTATTTTACTTCCAAAGAAGCAAAGAACAGGCTTCTCGAGCTACGTCTTTTGCAATATTATTGTTATTATCAGTGTGATGCTCCTGATGACAGAATTATTCATGTTGAACTTTACAAAAGTGATGAAGATTGGAGTGGTGGGGGAACTTTTTCAAAAATGGAACTAGTTACAGATGAAGGTTATGTCAAAAGATCACAAATGTATTTGGTTACGGATGATCTGGTCATAGAACCATGGTTGTCTCCAATTTCGTCTTTATATTTGCATAATCGTTTCAAAACTCCTCTTGATGATTTGGAGGAAAAAGTTGTCACTATTGGCGTCGACGAGGTAAATATAAGAGAGTGAAAACTATATGTATTTATCACCTACACTATATGTATTTTTACTATGGGACTGATTATGCAGCAGTTGCTCATCTCTCATTGTTGTGTTTGTGCAGAGTTACAGCATATTAAAGGCAGCTTTAAGCTCAACATCTGCTCTCACAAATGGTCTTCGTCACTTGTTAACCTAA
Protein sequence

>MS.gene78862.t1

MVLSFVSRLIAAAMAVFQIEEQVSLKLLVNTETNKVLFAEAGKDFVDVLCSFLTLPLGTIARLVQKDSNMEPVTIGCLNFLYQSVENIGLLPINNSSEDYCSTLKINIDDTVPTNYFMCSKDHGHHCPYLSIGATTFVNCLASLHRSHVLDLLKCSLLSKTPLTDLFLGKKPSIERSMMRSMIFSSDVENIFCSDVQVTLKLVVRKSDDNILYALGGDDFANMIIDFLTFPLGGVLGRLQGNNYLYFTSKEAKNRLLELRLLQYYCYYQCDAPDDRIIHVELYKSDEDWSGGGTFSKMELVTDEGYVKRSQMYLVTDDLVIEPWLSPISSLYLHNRFKTPLDDLEEKVVTIGVDESYSILKAALSSTSALTNGLRHLLT