AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46087

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46087.t1 MTR_7g062280 56.057 487 166 6 2 444 9 491 1.03e-175 502
MS.gene46087.t1 MTR_7g063900 56.289 485 165 6 2 444 9 488 1.80e-167 481
MS.gene46087.t1 MTR_7g063660 55.462 476 173 7 2 444 8 477 4.48e-167 479
MS.gene46087.t1 MTR_7g063880 57.113 478 157 11 2 447 10 471 2.86e-166 477
MS.gene46087.t1 MTR_7g062300 54.741 464 180 4 2 437 11 472 4.27e-165 474
MS.gene46087.t1 MTR_7g063840 56.632 475 165 10 2 444 8 473 1.28e-162 468
MS.gene46087.t1 MTR_7g063920 53.004 466 157 3 2 444 10 436 1.42e-158 456
MS.gene46087.t1 MTR_7g063830 56.954 453 168 12 2 444 9 444 4.58e-153 442
MS.gene46087.t1 MTR_7g063890 57.143 483 163 8 2 444 26 504 4.36e-152 442
MS.gene46087.t1 MTR_7g063820 54.772 482 173 9 2 444 9 484 1.64e-149 435
MS.gene46087.t1 MTR_3g007740 53.377 459 170 10 2 439 8 443 1.77e-141 413
MS.gene46087.t1 MTR_7g063670 50.766 457 194 8 4 444 16 457 1.08e-130 386
MS.gene46087.t1 MTR_7g066260 43.532 487 241 13 2 465 14 489 6.82e-110 334
MS.gene46087.t1 MTR_7g066570 42.331 489 219 10 1 442 12 484 1.20e-108 333
MS.gene46087.t1 MTR_7g066480 43.498 446 204 5 3 439 16 422 6.37e-103 314
MS.gene46087.t1 MTR_3g065200 42.544 456 181 11 1 424 1 407 1.57e-101 311
MS.gene46087.t1 MTR_7g066430 39.489 509 248 9 3 461 4 502 1.94e-100 310
MS.gene46087.t1 MTR_7g066430 27.586 232 147 8 2 220 256 479 8.19e-12 67.8
MS.gene46087.t1 MTR_7g066410 39.961 508 232 11 3 440 10 514 4.25e-99 307
MS.gene46087.t1 MTR_7g066490 41.892 444 200 6 3 439 16 408 1.41e-98 302
MS.gene46087.t1 MTR_7g066350 41.834 447 239 10 1 434 7 445 3.53e-97 300
MS.gene46087.t1 MTR_7g066340 42.762 449 241 8 1 438 10 453 1.18e-96 300
MS.gene46087.t1 MTR_7g012680 41.026 468 224 10 1 444 12 451 4.19e-96 297
MS.gene46087.t1 MTR_7g066290 42.506 447 212 8 2 434 14 429 8.74e-96 296
MS.gene46087.t1 MTR_7g058710 38.664 494 233 14 1 444 10 483 1.16e-95 297
MS.gene46087.t1 MTR_7g066580 40.678 472 197 13 9 431 1 438 5.05e-92 286
MS.gene46087.t1 MTR_7g066400 38.158 456 224 8 3 434 12 433 1.62e-89 280
MS.gene46087.t1 MTR_7g066360 43.146 445 225 10 4 434 15 445 2.05e-87 276
MS.gene46087.t1 MTR_1g041315 37.556 450 243 9 1 422 12 451 4.84e-86 273
MS.gene46087.t1 MTR_7g058700 37.004 454 205 10 15 444 531 927 1.44e-80 268
MS.gene46087.t1 MTR_7g063720 55.172 232 88 4 226 443 2 231 3.77e-74 233
MS.gene46087.t1 MTR_7g063720 29.148 223 128 7 3 220 23 220 1.48e-17 82.4
MS.gene46087.t1 MTR_7g066310 36.878 442 204 10 1 434 5 379 2.50e-73 237
MS.gene46087.t1 MTR_2g029400 36.147 462 191 13 1 427 12 404 1.01e-70 230
MS.gene46087.t1 MTR_2g029400 29.279 222 121 9 246 457 14 209 3.03e-12 68.6
MS.gene46087.t1 MTR_4g019310 34.669 499 262 16 3 445 8 498 9.64e-69 228
MS.gene46087.t1 MTR_7g063850 45.215 303 124 7 173 446 1 290 6.74e-65 211
MS.gene46087.t1 MTR_7g062270 55.429 175 78 0 4 178 11 185 8.17e-60 201
MS.gene46087.t1 MTR_4g017830 31.985 519 289 16 4 460 13 529 5.93e-59 202
MS.gene46087.t1 MTR_4g017830 28.631 241 135 10 3 219 267 494 3.88e-15 78.2
MS.gene46087.t1 MTR_4g017410 30.315 508 298 12 2 462 8 506 2.00e-55 192
MS.gene46087.t1 MTR_4g019340 32.766 470 262 13 4 426 39 501 9.89e-54 188
MS.gene46087.t1 MTR_4g019340 36.283 113 63 3 3 113 303 408 6.09e-13 71.2
MS.gene46087.t1 MTR_4g017440 30.200 500 284 13 4 444 15 508 1.99e-52 184
MS.gene46087.t1 MTR_4g017440 35.398 113 63 4 3 113 274 378 3.06e-11 65.9
MS.gene46087.t1 MTR_4g017610 30.297 472 274 14 6 434 16 475 2.64e-48 172
MS.gene46087.t1 MTR_7g063690 43.382 272 90 6 4 273 13 222 3.57e-48 166
MS.gene46087.t1 MTR_7g100420 38.344 326 157 8 144 437 84 397 7.46e-48 170
MS.gene46087.t1 MTR_7g100420 81.395 43 8 0 4 46 40 82 7.15e-15 76.6
MS.gene46087.t1 MTR_1g014060 46.569 204 97 7 16 213 13 210 1.96e-47 168
MS.gene46087.t1 MTR_1g014060 39.796 196 100 5 265 444 197 390 7.83e-28 114
MS.gene46087.t1 MTR_1g014060 28.302 212 118 8 259 438 13 222 1.54e-11 66.2
MS.gene46087.t1 MTR_7g066280 32.921 404 202 12 82 434 1 386 5.00e-45 162
MS.gene46087.t1 MTR_4g017470 28.205 507 255 10 4 444 13 476 2.39e-44 162
MS.gene46087.t1 MTR_7g066680 34.754 305 119 7 203 434 37 334 1.14e-38 144
MS.gene46087.t1 MTR_7g066680 29.907 214 128 8 2 205 85 286 3.87e-16 80.1
MS.gene46087.t1 MTR_8g023240 28.664 307 197 5 4 303 38 329 9.52e-37 142
MS.gene46087.t1 MTR_4g017550 26.483 472 288 11 17 434 3 469 3.51e-33 131
MS.gene46087.t1 MTR_4g017550 30.204 245 128 8 3 224 247 471 2.52e-14 75.5
MS.gene46087.t1 MTR_8g445860 31.224 237 139 5 3 226 13 238 1.21e-26 108
MS.gene46087.t1 MTR_1g115440 34.034 238 130 9 3 224 11 237 6.40e-25 103
MS.gene46087.t1 MTR_0150s0010 31.092 238 137 7 3 224 10 236 4.39e-20 89.7
MS.gene46087.t1 MTR_1g115455 29.487 234 142 7 3 224 9 231 1.68e-19 87.8
MS.gene46087.t1 MTR_7g063760 52.778 72 33 1 374 444 2 73 3.72e-18 79.3
MS.gene46087.t1 MTR_7g066390 38.816 152 55 3 287 434 1 118 1.04e-17 80.5
MS.gene46087.t1 MTR_7g063870 56.452 62 27 0 149 210 96 157 8.08e-16 77.8
MS.gene46087.t1 MTR_7g063870 63.462 52 19 0 2 53 30 81 4.03e-14 72.8
MS.gene46087.t1 MTR_2g067310 31.053 190 87 5 1 186 41 190 2.27e-14 73.2
MS.gene46087.t1 MTR_1g115450 38.261 115 61 3 3 112 7 116 5.19e-14 69.7
MS.gene46087.t1 MTR_4g019330 34.000 200 100 5 247 444 19 188 9.67e-14 70.1
MS.gene46087.t1 MTR_0150s0030 40.698 86 45 2 3 87 8 88 4.73e-12 65.5
MS.gene46087.t1 MTR_1g115470 39.175 97 52 2 3 97 6 97 1.05e-11 67.0
MS.gene46087.t1 MTR_8g044880 41.860 86 44 2 3 87 8 88 1.11e-11 65.9
MS.gene46087.t1 MTR_8g445910 41.860 86 44 2 3 87 8 88 1.14e-11 65.5
MS.gene46087.t1 MTR_4g019240 36.364 110 60 3 4 105 14 121 1.43e-11 63.5
MS.gene46087.t1 MTR_8g445920 40.964 83 44 1 3 85 10 87 1.56e-11 61.6
MS.gene46087.t1 MTR_8g044890 40.964 83 44 1 3 85 10 87 1.56e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46087.t1 AT3G09140 33.401 494 268 13 2 440 8 495 1.81e-64 216
MS.gene46087.t1 AT3G09140 31.609 522 268 14 2 440 8 523 1.01e-58 202
MS.gene46087.t1 AT5G01120 32.225 481 271 12 4 434 10 485 1.46e-58 201
MS.gene46087.t1 AT3G09110 37.898 314 182 6 3 307 9 318 1.24e-56 191
MS.gene46087.t1 AT5G01130 31.723 476 257 13 3 444 9 450 2.73e-56 194
MS.gene46087.t1 AT5G01150 30.539 501 293 11 3 457 9 500 5.79e-56 194
MS.gene46087.t1 AT5G43240 32.784 485 267 15 4 434 10 489 3.22e-55 192
MS.gene46087.t1 AT5G43240 32.784 485 267 15 4 434 10 489 3.22e-55 192
MS.gene46087.t1 AT5G43240 32.784 485 267 15 4 434 10 489 3.22e-55 192
MS.gene46087.t1 AT3G09120 37.224 317 173 7 2 300 5 313 2.46e-52 179
MS.gene46087.t1 AT5G01140 28.600 493 293 12 3 466 9 471 3.13e-47 170
MS.gene46087.t1 AT5G37320 27.789 475 302 17 4 440 10 481 3.26e-39 148
MS.gene46087.t1 AT5G43240 28.213 319 189 8 155 434 28 345 2.24e-18 87.0

Find 82 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGAGTTGTTTGTGTATT+AGG 0.138056 7.2:-41767332 MS.gene46087:CDS
TTCTTGTGTACCAACTTTAA+TGG 0.195350 7.2:-41767950 MS.gene46087:CDS
CTCCGTTTATTCCTAAATTC+TGG 0.237268 7.2:+41767735 None:intergenic
TTTGGATGAAACCAAATATT+TGG 0.251911 7.2:-41767258 MS.gene46087:CDS
CACACCCACACTTCTTATTA+CGG 0.304282 7.2:+41767897 None:intergenic
ATATAAGAGCATTGTTGATT+TGG 0.319787 7.2:-41767276 MS.gene46087:CDS
ATAAAATGTAAAGCTGAAAT+TGG 0.321982 7.2:+41766931 None:intergenic
CTCGGTCATCTCCAGAATTT+AGG 0.322259 7.2:-41767746 MS.gene46087:CDS
CTGACGAGTTATTTGGTTGC+AGG 0.322994 7.2:+41768029 None:intergenic
AAACGGAGCAAGTTCAATTA+AGG 0.325287 7.2:-41767720 MS.gene46087:CDS
TGGTTGCAGGAGCATTTCTT+TGG 0.359772 7.2:+41768042 None:intergenic
TTCAAACAACCGACCGTAAC+CGG 0.363536 7.2:+41768121 None:intergenic
CTCCAGAATTTAGGAATAAA+CGG 0.382551 7.2:-41767737 MS.gene46087:CDS
ACCATCCTTGCAAAGTTGTA+TGG 0.385151 7.2:-41767498 MS.gene46087:CDS
ACACCCACACTTCTTATTAC+GGG 0.387768 7.2:+41767898 None:intergenic
GTCTAACATGAGGCCGGTTA+CGG 0.398533 7.2:-41768134 MS.gene46087:CDS
GCAAGTGTCTCTGAAACTTC+TGG 0.411382 7.2:-41768272 MS.gene46087:CDS
GAACGTCACTATTGGCGTTA+AGG 0.425013 7.2:-41766869 MS.gene46087:CDS
GCAGTGTTTAAGCATATTGA+AGG 0.428493 7.2:-41766714 MS.gene46087:intron
TGCAATGGATTTGTTAATGA+TGG 0.428495 7.2:-41767830 MS.gene46087:CDS
CTCGGCAAACAAGACTTTGT+TGG 0.440015 7.2:+41768237 None:intergenic
CAAATCTGTCAAAGTAGTCT+TGG 0.441080 7.2:+41767535 None:intergenic
AAGTCTTGCAATGGTTCCTA+AGG 0.443959 7.2:+41768168 None:intergenic
CACAAAGTCCTTTCCTGCCT+CGG 0.445944 7.2:+41768219 None:intergenic
AAAGTCTTGTTTGCCGAGGC+AGG 0.449599 7.2:-41768232 MS.gene46087:CDS
ATGCACACGCTGATTGTCAA+TGG 0.450129 7.2:+41767154 None:intergenic
TGTCAAGATCTCTCACACTT+TGG 0.457422 7.2:+41768089 None:intergenic
AAGGAAAAGAACGTCACTAT+TGG 0.459212 7.2:-41766877 MS.gene46087:CDS
ACCATACAACTTTGCAAGGA+TGG 0.461555 7.2:+41767497 None:intergenic
TCAACATCTGCTCTAACAAA+TGG 0.462383 7.2:-41766680 MS.gene46087:CDS
GAATCACCAAGAAGTGTTGA+AGG 0.471630 7.2:-41767015 MS.gene46087:intron
GTTAGGTTTCAGATCAAAAG+AGG 0.474624 7.2:+41767472 None:intergenic
AAGAACACTTTAGCATATCT+AGG 0.486159 7.2:+41767564 None:intergenic
TCTGTAGCCATGTACGCTCT+TGG 0.488508 7.2:+41766979 None:intergenic
GAAGTTAAGGAAGAGCCTAT+TGG 0.490214 7.2:-41766599 MS.gene46087:CDS
AGCTTCTTAACATTGCCCTT+AGG 0.494753 7.2:-41768184 MS.gene46087:CDS
TGCACACGCTGATTGTCAAT+GGG 0.506089 7.2:+41767155 None:intergenic
AATAGGCTCTTCCTTAACTT+CGG 0.509391 7.2:+41766601 None:intergenic
GGTACACAAGAAGTACTTTG+TGG 0.510120 7.2:+41767961 None:intergenic
TCTCTGAAACATTTCTGCAA+TGG 0.511623 7.2:-41767845 MS.gene46087:CDS
GTACACAAGAAGTACTTTGT+GGG 0.511946 7.2:+41767962 None:intergenic
CGAGGCAGGAAAGGACTTTG+TGG 0.515286 7.2:-41768218 MS.gene46087:CDS
GTTAACTGAAGTTAAAGAAG+AGG 0.519663 7.2:-41766645 MS.gene46087:CDS
CTTGTTTGCCGAGGCAGGAA+AGG 0.520158 7.2:-41768227 MS.gene46087:CDS
GAAGGGACCAAGAGCGTACA+TGG 0.522845 7.2:-41766986 MS.gene46087:CDS
ATTTATTGTGAATGTCACTA+AGG 0.523465 7.2:-41767696 MS.gene46087:CDS
TTAGGAGGCAACTGTTCTGT+TGG 0.526707 7.2:-41767314 MS.gene46087:CDS
ATTCTGGAGATGACCGAGGC+TGG 0.530156 7.2:+41767751 None:intergenic
AATTCCTCTTAATGATCTGA+AGG 0.531211 7.2:-41766896 MS.gene46087:CDS
GAGGCTTGTTGACCCACACT+TGG 0.532128 7.2:-41767216 MS.gene46087:CDS
CTTCTCTACAAGTCTTGCAA+TGG 0.534813 7.2:+41768159 None:intergenic
GGGAAGATATTGTATGCTCA+AGG 0.535596 7.2:-41767404 MS.gene46087:CDS
GGAGTTGTTTGTGTATTAGG+AGG 0.543588 7.2:-41767329 MS.gene46087:CDS
TTTCTTCTATTTCCTATGGG+AGG 0.545340 7.2:-41767350 MS.gene46087:CDS
GGACGTGCAGCCATTAAAGT+TGG 0.552963 7.2:+41767940 None:intergenic
TCAATGCAATTTACCAGCCT+CGG 0.559307 7.2:-41767764 MS.gene46087:CDS
AACATGAGGCCGGTTACGGT+CGG 0.568053 7.2:-41768130 MS.gene46087:CDS
AAGTGTTGAAGGTTATGTGA+AGG 0.573765 7.2:-41767004 MS.gene46087:CDS
TTTCAGAGACACTTGCTCCA+TGG 0.574413 7.2:+41768279 None:intergenic
CTTGTTGTAAGAAAATCAGA+TGG 0.578892 7.2:-41767425 MS.gene46087:CDS
GAAGATATTGTATGCTCAAG+GGG 0.583525 7.2:-41767402 MS.gene46087:CDS
ATTTCCCGTAATAAGAAGTG+TGG 0.585793 7.2:-41767902 MS.gene46087:CDS
GTACATGGCTACAGATGACT+TGG 0.587051 7.2:-41766971 MS.gene46087:CDS
GGAAACCATACAACTTTGCA+AGG 0.594215 7.2:+41767493 None:intergenic
GGAAGATATTGTATGCTCAA+GGG 0.595124 7.2:-41767403 MS.gene46087:CDS
TATATAGTCGAGCCAAGTGT+GGG 0.595828 7.2:+41767204 None:intergenic
GAAGAAGTCTAACATGAGGC+CGG 0.600735 7.2:-41768140 MS.gene46087:CDS
TTATATAGTCGAGCCAAGTG+TGG 0.606586 7.2:+41767203 None:intergenic
CGTCACTATTGGCGTTAAGG+AGG 0.608587 7.2:-41766866 MS.gene46087:intron
AGTGTTGAAGGTTATGTGAA+GGG 0.608792 7.2:-41767003 MS.gene46087:CDS
ACACAAACAACTCCTCCCAT+AGG 0.613827 7.2:+41767338 None:intergenic
CAACAAAGTCTTGTTTGCCG+AGG 0.625669 7.2:-41768236 MS.gene46087:CDS
GGAAATGTTCAAATAATGAG+AGG 0.625943 7.2:+41767919 None:intergenic
ATGTTTCAGAGAAACTGAGC+GGG 0.634475 7.2:+41767856 None:intergenic
AGTCTTGCAATGGTTCCTAA+GGG 0.643709 7.2:+41768169 None:intergenic
TTTCCCGTAATAAGAAGTGT+GGG 0.659248 7.2:-41767901 MS.gene46087:CDS
TGTGAATGTCACTAAGGACA+AGG 0.660820 7.2:-41767690 MS.gene46087:intron
TTGTTGTAAGAAAATCAGAT+GGG 0.670005 7.2:-41767424 MS.gene46087:CDS
CTAAATTCTGGAGATGACCG+AGG 0.676832 7.2:+41767747 None:intergenic
TAGAGAAGAAGTCTAACATG+AGG 0.688408 7.2:-41768144 MS.gene46087:CDS
ATGACTTGGTTGTGACACTG+TGG 0.707665 7.2:-41766957 MS.gene46087:CDS
AATGTTTCAGAGAAACTGAG+CGG 0.749486 7.2:+41767855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTATTGTTTTTATCA+AGG - chr7.2:41767710-41767729 MS.gene46087:CDS 10.0%
!! ATAAAATGTAAAGCTGAAAT+TGG + chr7.2:41767914-41767933 None:intergenic 20.0%
!! TGTTAACAAATCTATTATAG+AGG + chr7.2:41768017-41768036 None:intergenic 20.0%
!! TTAAATAATCTATGTAATGC+AGG - chr7.2:41767254-41767273 MS.gene46087:CDS 20.0%
!!! TTTACATTTTATCAACGAAT+TGG - chr7.2:41767922-41767941 MS.gene46087:CDS 20.0%
!!! TTTATTTTGATGTTACAGTT+AGG + chr7.2:41767390-41767409 None:intergenic 20.0%
! AACAAAAAACCCAAATTAAG+GGG - chr7.2:41768267-41768286 MS.gene46087:CDS 25.0%
! ATTTATTGTGAATGTCACTA+AGG - chr7.2:41767146-41767165 MS.gene46087:CDS 25.0%
! CAAATTAAAAACCGAAGTTA+AGG - chr7.2:41768230-41768249 MS.gene46087:CDS 25.0%
! CAACAAAAAACCCAAATTAA+GGG - chr7.2:41768266-41768285 MS.gene46087:CDS 25.0%
! TGAAGAATATAGAAGTGAAT+GGG - chr7.2:41767778-41767797 MS.gene46087:CDS 25.0%
! TTGTTGTAAGAAAATCAGAT+GGG - chr7.2:41767418-41767437 MS.gene46087:CDS 25.0%
! TTTGGATGAAACCAAATATT+TGG - chr7.2:41767584-41767603 MS.gene46087:intron 25.0%
!! AGTTTTCTTCTATTTCCTAT+GGG - chr7.2:41767489-41767508 MS.gene46087:CDS 25.0%
!! TAATTTTCTGACGAGTTATT+TGG + chr7.2:41766823-41766842 None:intergenic 25.0%
!! TTCTTTTGACACCAAATATT+TGG + chr7.2:41767598-41767617 None:intergenic 25.0%
!!! ATATAAGAGCATTGTTGATT+TGG - chr7.2:41767566-41767585 MS.gene46087:CDS 25.0%
!!! TTTTGTTATCACTGACAATT+TGG - chr7.2:41767041-41767060 MS.gene46087:intron 25.0%
AAGAACACTTTAGCATATCT+AGG + chr7.2:41767281-41767300 None:intergenic 30.0%
AAGAATATAGAAGTGAATGG+GGG - chr7.2:41767780-41767799 MS.gene46087:CDS 30.0%
AATTCCTCTTAATGATCTGA+AGG - chr7.2:41767946-41767965 MS.gene46087:CDS 30.0%
ACAAAAAACCCAAATTAAGG+GGG - chr7.2:41768268-41768287 MS.gene46087:CDS 30.0%
CTCCAGAATTTAGGAATAAA+CGG - chr7.2:41767105-41767124 MS.gene46087:intron 30.0%
CTGAAGAATATAGAAGTGAA+TGG - chr7.2:41767777-41767796 MS.gene46087:CDS 30.0%
GAAGAATATAGAAGTGAATG+GGG - chr7.2:41767779-41767798 MS.gene46087:CDS 30.0%
GCAACAAAAAACCCAAATTA+AGG - chr7.2:41768265-41768284 MS.gene46087:CDS 30.0%
GGAAATGTTCAAATAATGAG+AGG + chr7.2:41766926-41766945 None:intergenic 30.0%
GTTAACTGAAGTTAAAGAAG+AGG - chr7.2:41768197-41768216 MS.gene46087:CDS 30.0%
TAATGCATTTGCAGTTCAAT+GGG - chr7.2:41767175-41767194 MS.gene46087:CDS 30.0%
TATCTCCTAGTAAATAAGTC+TGG + chr7.2:41768069-41768088 None:intergenic 30.0%
TTCTTGTGTACCAACTTTAA+TGG - chr7.2:41766892-41766911 MS.gene46087:CDS 30.0%
! CTTGTTGTAAGAAAATCAGA+TGG - chr7.2:41767417-41767436 MS.gene46087:CDS 30.0%
! GAGTTTTCTTCTATTTCCTA+TGG - chr7.2:41767488-41767507 MS.gene46087:CDS 30.0%
! TTTTCCTTCAGATCATTAAG+AGG + chr7.2:41767953-41767972 None:intergenic 30.0%
!! TGCAATGGATTTGTTAATGA+TGG - chr7.2:41767012-41767031 MS.gene46087:intron 30.0%
AAACGGAGCAAGTTCAATTA+AGG - chr7.2:41767122-41767141 MS.gene46087:CDS 35.0%
AAGGAAAAGAACGTCACTAT+TGG - chr7.2:41767965-41767984 MS.gene46087:CDS 35.0%
AATAGGCTCTTCCTTAACTT+CGG + chr7.2:41768244-41768263 None:intergenic 35.0%
AATGTTTCAGAGAAACTGAG+CGG + chr7.2:41766990-41767009 None:intergenic 35.0%
ACATAACCTTCAACACTTCT+TGG + chr7.2:41767836-41767855 None:intergenic 35.0%
AGAATATAGAAGTGAATGGG+GGG - chr7.2:41767781-41767800 MS.gene46087:CDS 35.0%
ATTTCCCGTAATAAGAAGTG+TGG - chr7.2:41766940-41766959 MS.gene46087:CDS 35.0%
CAAAAAACCCAAATTAAGGG+GGG - chr7.2:41768269-41768288 MS.gene46087:CDS 35.0%
CAAATCTGTCAAAGTAGTCT+TGG + chr7.2:41767310-41767329 None:intergenic 35.0%
CTCCGTTTATTCCTAAATTC+TGG + chr7.2:41767110-41767129 None:intergenic 35.0%
GAAGATATTGTATGCTCAAG+GGG - chr7.2:41767440-41767459 MS.gene46087:CDS 35.0%
GATTGCCAGACTTATTTACT+AGG - chr7.2:41768061-41768080 MS.gene46087:CDS 35.0%
GCAGTGTTTAAGCATATTGA+AGG - chr7.2:41768128-41768147 MS.gene46087:CDS 35.0%
GGAAGATATTGTATGCTCAA+GGG - chr7.2:41767439-41767458 MS.gene46087:CDS 35.0%
GTAATGCATTTGCAGTTCAA+TGG - chr7.2:41767174-41767193 MS.gene46087:CDS 35.0%
GTTAGGTTTCAGATCAAAAG+AGG + chr7.2:41767373-41767392 None:intergenic 35.0%
TAGAGAAGAAGTCTAACATG+AGG - chr7.2:41766698-41766717 MS.gene46087:CDS 35.0%
TCAACATCTGCTCTAACAAA+TGG - chr7.2:41768162-41768181 MS.gene46087:CDS 35.0%
TGTCAAAAGAAGCGAAAAAG+AGG - chr7.2:41767607-41767626 MS.gene46087:intron 35.0%
TTTCTTCTATTTCCTATGGG+AGG - chr7.2:41767492-41767511 MS.gene46087:CDS 35.0%
! AGTGTTGAAGGTTATGTGAA+GGG - chr7.2:41767839-41767858 MS.gene46087:CDS 35.0%
! TATTTTGCCCCCCTTAATTT+GGG + chr7.2:41768279-41768298 None:intergenic 35.0%
! TTTCCCGTAATAAGAAGTGT+GGG - chr7.2:41766941-41766960 MS.gene46087:CDS 35.0%
!! AAGTGTTGAAGGTTATGTGA+AGG - chr7.2:41767838-41767857 MS.gene46087:CDS 35.0%
!! GTACACAAGAAGTACTTTGT+GGG + chr7.2:41766883-41766902 None:intergenic 35.0%
!! TCTCTGAAACATTTCTGCAA+TGG - chr7.2:41766997-41767016 MS.gene46087:CDS 35.0%
!!! TTGGGTTTTTTGTTGCCAAT+AGG + chr7.2:41768261-41768280 None:intergenic 35.0%
AAGTCTTGCAATGGTTCCTA+AGG + chr7.2:41766677-41766696 None:intergenic 40.0%
ACACCCACACTTCTTATTAC+GGG + chr7.2:41766947-41766966 None:intergenic 40.0%
ACCATACAACTTTGCAAGGA+TGG + chr7.2:41767348-41767367 None:intergenic 40.0%
ACCATCCTTGCAAAGTTGTA+TGG - chr7.2:41767344-41767363 MS.gene46087:CDS 40.0%
AGCTTCTTAACATTGCCCTT+AGG - chr7.2:41766658-41766677 MS.gene46087:CDS 40.0%
AGTCTTGCAATGGTTCCTAA+GGG + chr7.2:41766676-41766695 None:intergenic 40.0%
ATGTTTCAGAGAAACTGAGC+GGG + chr7.2:41766989-41767008 None:intergenic 40.0%
CACACCCACACTTCTTATTA+CGG + chr7.2:41766948-41766967 None:intergenic 40.0%
CTTCTCTACAAGTCTTGCAA+TGG + chr7.2:41766686-41766705 None:intergenic 40.0%
GAAGTTAAGGAAGAGCCTAT+TGG - chr7.2:41768243-41768262 MS.gene46087:CDS 40.0%
GAATATAGAAGTGAATGGGG+GGG - chr7.2:41767782-41767801 MS.gene46087:CDS 40.0%
GGAAACCATACAACTTTGCA+AGG + chr7.2:41767352-41767371 None:intergenic 40.0%
GGAGGAGTTGTTTGTGTATT+AGG - chr7.2:41767510-41767529 MS.gene46087:CDS 40.0%
GGAGTTGTTTGTGTATTAGG+AGG - chr7.2:41767513-41767532 MS.gene46087:CDS 40.0%
GGGAAGATATTGTATGCTCA+AGG - chr7.2:41767438-41767457 MS.gene46087:CDS 40.0%
TATATAGTCGAGCCAAGTGT+GGG + chr7.2:41767641-41767660 None:intergenic 40.0%
TCAATGCAATTTACCAGCCT+CGG - chr7.2:41767078-41767097 MS.gene46087:intron 40.0%
TGTCAAGATCTCTCACACTT+TGG + chr7.2:41766756-41766775 None:intergenic 40.0%
TGTGAATGTCACTAAGGACA+AGG - chr7.2:41767152-41767171 MS.gene46087:CDS 40.0%
TTATATAGTCGAGCCAAGTG+TGG + chr7.2:41767642-41767661 None:intergenic 40.0%
! CTATTTTGCCCCCCTTAATT+TGG + chr7.2:41768280-41768299 None:intergenic 40.0%
!! GAATCACCAAGAAGTGTTGA+AGG - chr7.2:41767827-41767846 MS.gene46087:CDS 40.0%
!! GGTACACAAGAAGTACTTTG+TGG + chr7.2:41766884-41766903 None:intergenic 40.0%
ACACAAACAACTCCTCCCAT+AGG + chr7.2:41767507-41767526 None:intergenic 45.0%
ACTATTGGCGTTAAGGAGGT+AGG - chr7.2:41767980-41767999 MS.gene46087:CDS 45.0%
CTCGGCAAACAAGACTTTGT+TGG + chr7.2:41766608-41766627 None:intergenic 45.0%
CTCGGTCATCTCCAGAATTT+AGG - chr7.2:41767096-41767115 MS.gene46087:intron 45.0%
CTGACGAGTTATTTGGTTGC+AGG + chr7.2:41766816-41766835 None:intergenic 45.0%
GAACGTCACTATTGGCGTTA+AGG - chr7.2:41767973-41767992 MS.gene46087:CDS 45.0%
GAAGAAGTCTAACATGAGGC+CGG - chr7.2:41766702-41766721 MS.gene46087:CDS 45.0%
GGGGGTAAGTATGAACTGAT+GGG - chr7.2:41767800-41767819 MS.gene46087:CDS 45.0%
GTACATGGCTACAGATGACT+TGG - chr7.2:41767871-41767890 MS.gene46087:CDS 45.0%
TTAGGAGGCAACTGTTCTGT+TGG - chr7.2:41767528-41767547 MS.gene46087:CDS 45.0%
TTCAAACAACCGACCGTAAC+CGG + chr7.2:41766724-41766743 None:intergenic 45.0%
! ATGCACACGCTGATTGTCAA+TGG + chr7.2:41767691-41767710 None:intergenic 45.0%
! CTAAATTCTGGAGATGACCG+AGG + chr7.2:41767098-41767117 None:intergenic 45.0%
! TGCACACGCTGATTGTCAAT+GGG + chr7.2:41767690-41767709 None:intergenic 45.0%
!! ATGACTTGGTTGTGACACTG+TGG - chr7.2:41767885-41767904 MS.gene46087:CDS 45.0%
!! CAACAAAGTCTTGTTTGCCG+AGG - chr7.2:41766606-41766625 MS.gene46087:CDS 45.0%
!! GCAAGTGTCTCTGAAACTTC+TGG - chr7.2:41766570-41766589 MS.gene46087:CDS 45.0%
!! TGGTTGCAGGAGCATTTCTT+TGG + chr7.2:41766803-41766822 None:intergenic 45.0%
!! TTATTTAAATTAAAGATTAA+AGG + chr7.2:41767242-41767261 None:intergenic 5.0%
CACAAAGTCCTTTCCTGCCT+CGG + chr7.2:41766626-41766645 None:intergenic 50.0%
CGTCACTATTGGCGTTAAGG+AGG - chr7.2:41767976-41767995 MS.gene46087:CDS 50.0%
GGACGTGCAGCCATTAAAGT+TGG + chr7.2:41766905-41766924 None:intergenic 50.0%
GGGGGGTAAGTATGAACTGA+TGG - chr7.2:41767799-41767818 MS.gene46087:CDS 50.0%
GTCTAACATGAGGCCGGTTA+CGG - chr7.2:41766708-41766727 MS.gene46087:CDS 50.0%
TCTGTAGCCATGTACGCTCT+TGG + chr7.2:41767866-41767885 None:intergenic 50.0%
!! AAAGTCTTGTTTGCCGAGGC+AGG - chr7.2:41766610-41766629 MS.gene46087:CDS 50.0%
AACATGAGGCCGGTTACGGT+CGG - chr7.2:41766712-41766731 MS.gene46087:CDS 55.0%
CGAGGCAGGAAAGGACTTTG+TGG - chr7.2:41766624-41766643 MS.gene46087:CDS 55.0%
CTTGTTTGCCGAGGCAGGAA+AGG - chr7.2:41766615-41766634 MS.gene46087:CDS 55.0%
! ATTCTGGAGATGACCGAGGC+TGG + chr7.2:41767094-41767113 None:intergenic 55.0%
! GAAGGGACCAAGAGCGTACA+TGG - chr7.2:41767856-41767875 MS.gene46087:CDS 55.0%
!! GAGGCTTGTTGACCCACACT+TGG - chr7.2:41767626-41767645 MS.gene46087:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41766565 41768299 41766565 ID=MS.gene46087
chr7.2 mRNA 41766565 41768299 41766565 ID=MS.gene46087.t1;Parent=MS.gene46087
chr7.2 exon 41767691 41768299 41767691 ID=MS.gene46087.t1.exon1;Parent=MS.gene46087.t1
chr7.2 CDS 41767691 41768299 41767691 ID=cds.MS.gene46087.t1;Parent=MS.gene46087.t1
chr7.2 exon 41767113 41767588 41767113 ID=MS.gene46087.t1.exon2;Parent=MS.gene46087.t1
chr7.2 CDS 41767113 41767588 41767113 ID=cds.MS.gene46087.t1;Parent=MS.gene46087.t1
chr7.2 exon 41766867 41767026 41766867 ID=MS.gene46087.t1.exon3;Parent=MS.gene46087.t1
chr7.2 CDS 41766867 41767026 41766867 ID=cds.MS.gene46087.t1;Parent=MS.gene46087.t1
chr7.2 exon 41766565 41766732 41766565 ID=MS.gene46087.t1.exon4;Parent=MS.gene46087.t1
chr7.2 CDS 41766565 41766732 41766565 ID=cds.MS.gene46087.t1;Parent=MS.gene46087.t1
Gene Sequence

>MS.gene46087

ATGGAGCAAGTGTCTCTGAAACTTCTGGTGAACAAAGATACCAACAAAGTCTTGTTTGCCGAGGCAGGAAAGGACTTTGTGGATGTTCTTTTTAGCTTCTTAACATTGCCCTTAGGAACCATTGCAAGACTTGTAGAGAAGAAGTCTAACATGAGGCCGGTTACGGTCGGTTGTTTGAACAATCTCTACCAAAGTGTGAGAGATCTTGACAAAGAGTGTCTGAAAACATATACAACCAAAGAAATGCTCCTGCAACCAAATAACTCGTCAGAAAATTATTGTAGCACTCTTAAAATGAACATTGATGACACTGAGCCCACAAAGTACTTCTTGTGTACCAACTTTAATGGCTGCACGTCCTCTCATTATTTGAACATTTCCCGTAATAAGAAGTGTGGGTGTGAAAGTGCTGATTATTATACCCGCTCAGTTTCTCTGAAACATTTCTGCAATGGATTTGTTAATGATGGTACTAGTTTTGTTATCACTGACAATTTGGTTGTCATGCAAAACTCAATGCAATTTACCAGCCTCGGTCATCTCCAGAATTTAGGAATAAACGGAGCAAGTTCAATTAAGGAATTTATTGTGAATGTCACTAAGGACAAGGTAATGCATTTGCAGTTCAATGGGTGCTTGTTTGTATTTACTTACTCTATTTAAAAAAATATCTTCCTTTAATCTTTAATTTAAATAATCTATGTAATGCAGGTCCTAGATATGCTAAAGTGTTCTTTGCTTTCCAAGACTACTTTGACAGATTTGTTTTTACGAACAAAACCATCCTTGCAAAGTTGTATGGTTTCCTCTTTTGATCTGAAACCTAACTGTAACATCAAAATAAACGTGAAGCTTGTTGTAAGAAAATCAGATGGGAAGATATTGTATGCTCAAGGGGAACAAGATTTTGCTGACTTACTTTTGAGTTTTCTTCTATTTCCTATGGGAGGAGTTGTTTGTGTATTAGGAGGCAACTGTTCTGTTGGCAATATTGATTCGTTATATAAGAGCATTGTTGATTTGGATGAAACCAAATATTTGGTGTCAAAAGAAGCGAAAAAGAGGCTTGTTGACCCACACTTGGCTCGACTATATAAATTTAAATTAAGCAATGAGATAGTACCCATTGACAATCAGCGTGTGCATAATATTATTGTTTTTATCAAGGTGAAAATTATGAAAAAAGTGTAAGAAATTATAATTTTTTCATCACTGAAGAATATAGAAGTGAATGGGGGGGTAAGTATGAACTGATGGGTGTTGAATCACCAAGAAGTGTTGAAGGTTATGTGAAGGGACCAAGAGCGTACATGGCTACAGATGACTTGGTTGTGACACTGTGGTCTCCAATTTCAGCTTTACATTTTATCAACGAATTGGAAATTCCTCTTAATGATCTGAAGGAAAAGAACGTCACTATTGGCGTTAAGGAGGTAGGAAATATCAAAACCTCTATAATAGATTTGTTAACATCAATATGCTGTGATTTGTTGTTTGATTGCCAGACTTATTTACTAGGAGATATATGAAAGCAATTGCTTTATTATACGTTGTTTTTTCTTTGCAGTGTTTAAGCATATTGAAGGCATCTTTGATCTCAACATCTGCTCTAACAAATGGACTTTGTCATCTGTTAACTGAAGTTAAAGAAGAGGTTCGTAAAAACAAATTAAAAACCGAAGTTAAGGAAGAGCCTATTGGCAACAAAAAACCCAAATTAAGGGGGGCAAAATAG
Protein sequence

>MS.gene46087.t1

MEQVSLKLLVNKDTNKVLFAEAGKDFVDVLFSFLTLPLGTIARLVEKKSNMRPVTVGCLNNLYQSVRDLDKECLKTYTTKEMLLQPNNSSENYCSTLKMNIDDTEPTKYFLCTNFNGCTSSHYLNISRNKKCGCESADYYTRSVSLKHFCNGFVNDGTSFVITDNLVVMQNSMQFTSLGHLQNLGINGASSIKEFIVNVTKDKVLDMLKCSLLSKTTLTDLFLRTKPSLQSCMVSSFDLKPNCNIKINVKLVVRKSDGKILYAQGEQDFADLLLSFLLFPMGGVVCVLGGNCSVGNIDSLYKSIVDLDETKYLVSKEAKKRLVDPHLARLYKFKLSNEIVPIDNQRVHNIIVFIKVKIMKKVSVEGYVKGPRAYMATDDLVVTLWSPISALHFINELEIPLNDLKEKNVTIGVKECLSILKASLISTSALTNGLCHLLTEVKEEVRKNKLKTEVKEEPIGNKKPKLRGAK