AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45948

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45948.t1 MTR_7g066570 63.115 488 168 3 1 482 1 482 0.0 585
MS.gene45948.t1 MTR_7g058710 61.600 500 155 10 5 488 6 484 0.0 566
MS.gene45948.t1 MTR_7g012680 59.623 478 158 5 6 483 6 448 0.0 518
MS.gene45948.t1 MTR_2g029400 59.252 481 109 8 1 470 1 405 2.71e-176 501
MS.gene45948.t1 MTR_7g066680 81.879 298 23 1 211 477 38 335 4.57e-171 485
MS.gene45948.t1 MTR_7g066260 54.032 496 181 9 6 487 7 469 9.14e-167 480
MS.gene45948.t1 MTR_7g066260 26.891 238 155 8 249 474 5 235 5.34e-16 80.9
MS.gene45948.t1 MTR_7g058700 56.379 486 101 7 26 488 531 928 1.10e-162 484
MS.gene45948.t1 MTR_7g066340 53.402 485 181 6 8 482 6 455 1.77e-158 458
MS.gene45948.t1 MTR_7g066580 52.795 483 172 10 20 484 1 445 2.14e-155 449
MS.gene45948.t1 MTR_7g066350 52.784 485 169 12 10 477 5 446 6.28e-147 428
MS.gene45948.t1 MTR_1g041315 49.080 489 186 9 1 464 1 451 1.85e-142 418
MS.gene45948.t1 MTR_7g066290 49.287 491 175 10 3 480 4 433 3.83e-134 395
MS.gene45948.t1 MTR_7g066430 45.825 491 243 7 14 485 4 490 2.14e-130 387
MS.gene45948.t1 MTR_7g066400 46.791 483 184 8 10 476 8 433 1.20e-128 381
MS.gene45948.t1 MTR_7g066360 47.129 505 200 12 1 487 1 456 1.12e-126 377
MS.gene45948.t1 MTR_7g066410 44.444 504 242 7 15 481 11 513 2.81e-123 370
MS.gene45948.t1 MTR_7g066410 28.870 239 143 7 7 227 277 506 2.42e-14 75.9
MS.gene45948.t1 MTR_7g066310 46.934 473 159 9 11 482 4 385 2.87e-122 363
MS.gene45948.t1 MTR_7g063660 38.843 484 268 8 10 481 5 472 1.92e-96 300
MS.gene45948.t1 MTR_7g063660 29.536 237 134 8 254 474 4 223 6.93e-17 83.6
MS.gene45948.t1 MTR_7g063900 40.281 499 262 11 4 482 2 484 3.92e-95 296
MS.gene45948.t1 MTR_7g062300 37.628 489 268 9 4 476 2 469 7.65e-94 293
MS.gene45948.t1 MTR_7g062280 37.525 501 274 12 4 481 2 486 1.93e-93 292
MS.gene45948.t1 MTR_7g063880 39.286 504 251 16 5 488 2 470 5.71e-93 290
MS.gene45948.t1 MTR_7g063820 39.425 487 271 13 8 481 4 479 2.33e-92 289
MS.gene45948.t1 MTR_7g063890 40.695 489 257 10 13 482 26 500 3.99e-87 276
MS.gene45948.t1 MTR_7g063840 36.566 495 273 14 1 481 1 468 2.87e-86 273
MS.gene45948.t1 MTR_7g066280 41.247 417 193 9 93 482 1 392 6.91e-85 268
MS.gene45948.t1 MTR_4g019310 35.630 508 279 14 11 486 5 496 5.10e-84 268
MS.gene45948.t1 MTR_4g019310 28.936 235 144 10 10 230 262 487 1.82e-11 66.6
MS.gene45948.t1 MTR_3g007740 37.014 489 235 11 13 481 8 443 8.01e-81 258
MS.gene45948.t1 MTR_7g063920 34.765 489 248 9 5 481 2 431 1.36e-80 257
MS.gene45948.t1 MTR_7g063830 35.020 494 253 12 8 486 4 444 1.83e-79 254
MS.gene45948.t1 MTR_1g014060 57.477 214 81 3 23 229 9 219 6.73e-75 241
MS.gene45948.t1 MTR_1g014060 51.232 203 81 3 280 482 202 386 6.11e-51 178
MS.gene45948.t1 MTR_1g014060 25.728 206 141 6 266 465 9 208 8.36e-11 64.3
MS.gene45948.t1 MTR_3g065200 36.207 464 228 12 14 467 3 408 5.68e-74 241
MS.gene45948.t1 MTR_7g063670 35.317 504 235 11 15 488 16 458 6.42e-74 241
MS.gene45948.t1 MTR_4g017440 33.911 519 287 16 1 480 1 502 8.91e-69 228
MS.gene45948.t1 MTR_4g017830 33.843 523 277 21 4 480 2 501 5.53e-68 227
MS.gene45948.t1 MTR_4g017610 33.267 502 273 14 7 477 6 476 4.89e-67 223
MS.gene45948.t1 MTR_4g017610 27.459 244 158 6 250 478 4 243 3.85e-13 71.6
MS.gene45948.t1 MTR_4g019340 34.077 493 256 15 15 468 39 501 5.08e-66 221
MS.gene45948.t1 MTR_4g019340 34.615 104 61 3 14 117 303 399 3.10e-11 65.9
MS.gene45948.t1 MTR_4g017410 33.398 512 274 16 8 481 3 485 8.96e-66 221
MS.gene45948.t1 MTR_7g066480 41.390 331 168 7 13 329 15 333 3.88e-65 217
MS.gene45948.t1 MTR_7g066480 57.500 80 34 0 407 486 348 427 3.08e-20 93.2
MS.gene45948.t1 MTR_7g066490 41.049 324 163 7 14 329 16 319 8.03e-64 213
MS.gene45948.t1 MTR_7g066490 57.500 80 34 0 407 486 334 413 1.32e-19 91.3
MS.gene45948.t1 MTR_4g017470 29.845 516 277 12 5 481 2 471 6.71e-55 191
MS.gene45948.t1 MTR_4g017550 32.992 488 243 19 41 478 18 471 6.21e-54 188
MS.gene45948.t1 MTR_7g063720 40.529 227 109 4 259 481 23 227 5.66e-45 158
MS.gene45948.t1 MTR_7g063720 25.778 225 129 9 14 227 23 220 3.53e-12 66.6
MS.gene45948.t1 MTR_7g062270 42.246 187 93 6 15 193 11 190 1.94e-36 139
MS.gene45948.t1 MTR_2g067310 44.444 171 52 4 26 196 59 186 1.35e-31 122
MS.gene45948.t1 MTR_7g066390 38.674 181 52 3 300 480 1 122 4.51e-28 109
MS.gene45948.t1 MTR_8g023240 25.051 491 304 18 15 480 38 489 6.78e-27 114
MS.gene45948.t1 MTR_7g063850 33.621 232 131 6 259 481 66 283 3.29e-26 108
MS.gene45948.t1 MTR_7g100420 31.646 316 202 7 164 476 89 393 1.57e-25 108
MS.gene45948.t1 MTR_7g100420 66.667 42 14 0 15 56 40 81 1.44e-11 66.6
MS.gene45948.t1 MTR_1g115440 30.364 247 127 7 253 473 5 232 1.51e-24 102
MS.gene45948.t1 MTR_1g115440 30.932 236 140 6 13 232 10 238 8.66e-24 100
MS.gene45948.t1 MTR_0150s0010 30.252 238 129 8 258 473 9 231 5.31e-20 89.4
MS.gene45948.t1 MTR_0150s0010 28.346 254 133 6 8 232 4 237 1.05e-19 88.6
MS.gene45948.t1 MTR_8g445860 27.004 237 147 5 14 234 13 239 3.67e-19 87.0
MS.gene45948.t1 MTR_4g019240 40.870 115 58 4 10 116 9 121 1.04e-16 78.6
MS.gene45948.t1 MTR_1g115450 37.209 86 49 1 14 99 7 87 1.19e-15 74.3
MS.gene45948.t1 MTR_7g063690 33.766 154 86 5 141 286 77 222 5.37e-15 75.1
MS.gene45948.t1 MTR_7g063690 62.500 48 18 0 15 62 13 60 1.04e-11 65.5
MS.gene45948.t1 MTR_7g063760 50.667 75 35 2 415 488 1 74 1.24e-14 69.3
MS.gene45948.t1 MTR_1g115455 39.535 86 47 1 14 99 9 89 4.50e-14 72.0
MS.gene45948.t1 MTR_1g115470 37.374 99 55 2 12 108 4 97 6.63e-14 73.9
MS.gene45948.t1 MTR_8g445920 36.471 85 49 1 8 92 4 83 9.53e-12 62.0
MS.gene45948.t1 MTR_8g044890 36.471 85 49 1 8 92 4 83 9.53e-12 62.0
MS.gene45948.t1 MTR_0150s0030 34.483 87 51 2 14 99 8 89 1.52e-11 64.3
MS.gene45948.t1 MTR_7g063870 54.545 55 25 0 8 62 25 79 9.81e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45948.t1 AT5G01120 32.305 486 303 10 11 476 6 485 9.39e-68 226
MS.gene45948.t1 AT5G01150 30.567 494 305 10 14 486 9 485 7.92e-62 210
MS.gene45948.t1 AT5G01150 24.464 233 157 6 254 474 4 229 2.72e-11 66.2
MS.gene45948.t1 AT5G43240 31.423 506 285 12 11 476 6 489 5.78e-57 197
MS.gene45948.t1 AT5G43240 31.423 506 285 12 11 476 6 489 5.78e-57 197
MS.gene45948.t1 AT5G43240 31.423 506 285 12 11 476 6 489 5.78e-57 197
MS.gene45948.t1 AT3G09140 31.309 527 279 19 11 488 6 498 3.93e-53 187
MS.gene45948.t1 AT3G09140 29.910 555 278 19 11 488 6 526 5.95e-50 179
MS.gene45948.t1 AT5G01130 30.169 474 286 9 14 480 9 444 6.88e-50 177
MS.gene45948.t1 AT3G09110 33.544 316 197 5 14 321 9 319 5.07e-47 166
MS.gene45948.t1 AT5G01140 28.306 484 302 11 14 488 9 456 1.13e-46 169
MS.gene45948.t1 AT5G01140 26.244 221 107 6 1 200 227 412 5.81e-11 65.1
MS.gene45948.t1 AT3G09120 33.754 317 190 6 11 313 3 313 6.20e-46 162
MS.gene45948.t1 AT3G09120 24.082 245 164 7 256 484 3 241 3.01e-12 68.2
MS.gene45948.t1 AT5G37320 28.291 509 279 20 21 485 18 484 2.71e-37 143
MS.gene45948.t1 AT5G43240 27.557 352 196 10 163 476 15 345 1.89e-18 87.4

Find 61 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAGCAGCATTTCCTTGC+AGG 0.207573 7.2:-44970939 None:intergenic
TTAAATACGAAGTCAGTTAA+AGG 0.223806 7.2:-44971451 None:intergenic
TCAAAAGCTCAAACTGAATA+TGG 0.251469 7.2:+44970988 MS.gene45948:CDS
AATATTGAAGCAGTTCAATT+TGG 0.301162 7.2:+44970854 MS.gene45948:CDS
TAAGCTTCCATAGAGCTTCT+TGG 0.318711 7.2:-44970962 None:intergenic
TGTGACGTTAAATATGTATC+TGG 0.325833 7.2:-44971745 None:intergenic
TAAATACGAAGTCAGTTAAA+GGG 0.346351 7.2:-44971450 None:intergenic
GGCAAGGTATCTGCAGAAAT+TGG 0.349648 7.2:-44971835 None:intergenic
ATCATACTTGCTATAATTCC+CGG 0.351138 7.2:+44971869 MS.gene45948:CDS
CAAAATTACGTTGAGAGTTA+TGG 0.356213 7.2:+44970712 MS.gene45948:CDS
GCTTCTTTACCTTGCCCTTA+GGG 0.358047 7.2:+44970801 MS.gene45948:CDS
AGCTTCTTTACCTTGCCCTT+AGG 0.372832 7.2:+44970800 MS.gene45948:CDS
GCTGCAGCCAAGAAGCTCTA+TGG 0.379123 7.2:+44970955 MS.gene45948:CDS
CTCTATTCTTAAACTCTGGT+TGG 0.385977 7.2:-44971510 None:intergenic
TCAACTTCTGCTTTGACAAA+TGG 0.395017 7.2:+44972276 MS.gene45948:CDS
TCTTCTCTATTCTTAAACTC+TGG 0.403389 7.2:-44971514 None:intergenic
TAATGGTTGTTGTTAAGAAT+TGG 0.413122 7.2:-44972305 None:intergenic
TCTGCAGAAATTGGTAAAGT+TGG 0.429039 7.2:-44971826 None:intergenic
TCGCACACGGCGTGCTGCAA+AGG 0.435060 7.2:-44971022 None:intergenic
TTTGTTACTGCTATGGTTGA+CGG 0.462596 7.2:+44970662 None:intergenic
TTCAACAAACAAAATCTCTC+TGG 0.464201 7.2:-44971590 None:intergenic
CGTATTACATATTATTGTTG+TGG 0.466001 7.2:+44971907 MS.gene45948:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.486168 7.2:+44971667 MS.gene45948:CDS
CAAGTATGATAATGATAGAC+AGG 0.490086 7.2:-44971856 None:intergenic
AGCTCAAATTGTGCTGCAAT+GGG 0.497340 7.2:-44971796 None:intergenic
AGTTGTAGAGAATTTGCAAA+AGG 0.501637 7.2:+44971994 MS.gene45948:CDS
GAGTCTTGCAATAGTCCCTA+AGG 0.503426 7.2:-44970816 None:intergenic
TTTAGGAAATGGCTTTGCTA+AGG 0.504499 7.2:+44971162 MS.gene45948:CDS
AGCACGCCGTGTGCGAGAAG+TGG 0.517584 7.2:+44971029 MS.gene45948:CDS
GCACGCCGTGTGCGAGAAGT+GGG 0.527100 7.2:+44971030 MS.gene45948:CDS
CGTTCCTCTATCTGATGTAG+AGG 0.528649 7.2:+44972101 MS.gene45948:CDS
TACGAAGAGAGCGAATCCAC+CGG 0.532890 7.2:-44971888 None:intergenic
GAGCTCAAATTGTGCTGCAA+TGG 0.539861 7.2:-44971797 None:intergenic
TTTCTAACCTTCCCCTTGGG+GGG 0.541458 7.2:+44971646 MS.gene45948:CDS
TAGAGAAGAAACATCTGAAG+AGG 0.545921 7.2:+44971528 MS.gene45948:CDS
ACGAAGAGAGCGAATCCACC+GGG 0.552296 7.2:-44971887 None:intergenic
TGAAATAGCATCGAAGGATG+AGG 0.568512 7.2:-44972061 None:intergenic
AAAAGGACCATCAGTATACA+TGG 0.573482 7.2:+44972011 MS.gene45948:CDS
ATACATGGTTACAGATGACT+TGG 0.574559 7.2:+44972026 MS.gene45948:CDS
TCTGTATGCTGAAGCAGTGA+AGG 0.574622 7.2:+44970757 MS.gene45948:CDS
ATCAGAAATGATTAATGTGG+CGG 0.575110 7.2:-44971188 None:intergenic
AAGAATCAAAAGTGCAGTTG+CGG 0.582776 7.2:+44971094 MS.gene45948:CDS
TGCAATAGTCCCTAAGGGCA+AGG 0.589160 7.2:-44970810 None:intergenic
AAGAAACATCTGAAGAGGGT+AGG 0.591438 7.2:+44971533 MS.gene45948:CDS
ATAGCATCGAAGGATGAGGT+TGG 0.598823 7.2:-44972057 None:intergenic
TAGATGTGAAATAGCATCGA+AGG 0.600877 7.2:-44972067 None:intergenic
TCAAATTGTGCTGCAATGGG+AGG 0.601665 7.2:-44971793 None:intergenic
AGAGAAGAAACATCTGAAGA+GGG 0.601746 7.2:+44971529 MS.gene45948:CDS
TCTGTAACCATGTATACTGA+TGG 0.602750 7.2:-44972018 None:intergenic
AATTACGTTGAGAGTTATGG+TGG 0.607698 7.2:+44970715 MS.gene45948:CDS
AAATACGAAGTCAGTTAAAG+GGG 0.611325 7.2:-44971449 None:intergenic
GGTTAGAATTGGTGTGAACG+AGG 0.622070 7.2:+44972131 MS.gene45948:CDS
ATCATCAGAAATGATTAATG+TGG 0.625754 7.2:-44971191 None:intergenic
AAGCTTGAAATCACACACAT+TGG 0.632079 7.2:+44971262 MS.gene45948:CDS
ACAATCCCACTTCTCGCACA+CGG 0.644010 7.2:-44971035 None:intergenic
TTTATGCACAAATACCTGCA+AGG 0.646419 7.2:+44970925 MS.gene45948:CDS
AGTCTTGCAATAGTCCCTAA+GGG 0.648111 7.2:-44970815 None:intergenic
ATTTGTCAAAGCAGAAGTTG+AGG 0.649252 7.2:-44972274 None:intergenic
ATGATAATGATAGACAGGCA+AGG 0.675200 7.2:-44971851 None:intergenic
ATACTTGCTATAATTCCCGG+TGG 0.678337 7.2:+44971872 MS.gene45948:CDS
GATTGTGTTAGAAAGCAAAG+TGG 0.712588 7.2:+44971052 MS.gene45948:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTGTTCCAAAAACATT+AGG - chr7.2:44971229-44971248 None:intergenic 20.0%
! AATATTGAAGCAGTTCAATT+TGG + chr7.2:44970854-44970873 MS.gene45948:CDS 25.0%
! ATCATCAGAAATGATTAATG+TGG - chr7.2:44971194-44971213 None:intergenic 25.0%
! ATTCTTAAAAATGCTCAAAC+GGG - chr7.2:44971080-44971099 None:intergenic 25.0%
! CGTATTACATATTATTGTTG+TGG + chr7.2:44971907-44971926 MS.gene45948:CDS 25.0%
! GATGAGATTTATATATAGAG+AGG - chr7.2:44971332-44971351 None:intergenic 25.0%
! GATTCTTAAAAATGCTCAAA+CGG - chr7.2:44971081-44971100 None:intergenic 25.0%
! TAAATACGAAGTCAGTTAAA+GGG - chr7.2:44971453-44971472 None:intergenic 25.0%
! TTAAATACGAAGTCAGTTAA+AGG - chr7.2:44971454-44971473 None:intergenic 25.0%
! TTATTTGTTTACATGTTGCA+GGG + chr7.2:44972225-44972244 MS.gene45948:intron 25.0%
! TTTATTTGTTTACATGTTGC+AGG + chr7.2:44972224-44972243 MS.gene45948:intron 25.0%
!! AAACTCAAAAATTCTTTTGG+TGG - chr7.2:44971145-44971164 None:intergenic 25.0%
!! AACTCAAAAATTCTTTTGGT+GGG - chr7.2:44971144-44971163 None:intergenic 25.0%
!! CCTAAACTCAAAAATTCTTT+TGG - chr7.2:44971148-44971167 None:intergenic 25.0%
!! TAATGGTTGTTGTTAAGAAT+TGG - chr7.2:44972308-44972327 None:intergenic 25.0%
!!! CCAAAAGAATTTTTGAGTTT+AGG + chr7.2:44971145-44971164 MS.gene45948:CDS 25.0%
!!! GAATTTTTGAGTTTAGGAAA+TGG + chr7.2:44971151-44971170 MS.gene45948:CDS 25.0%
AAATACGAAGTCAGTTAAAG+GGG - chr7.2:44971452-44971471 None:intergenic 30.0%
AGTTGTAGAGAATTTGCAAA+AGG + chr7.2:44971994-44972013 MS.gene45948:CDS 30.0%
ATCAGAAATGATTAATGTGG+CGG - chr7.2:44971191-44971210 None:intergenic 30.0%
CAAAATTACGTTGAGAGTTA+TGG + chr7.2:44970712-44970731 MS.gene45948:CDS 30.0%
TCAAAAGCTCAAACTGAATA+TGG + chr7.2:44970988-44971007 MS.gene45948:CDS 30.0%
TCTTCTCTATTCTTAAACTC+TGG - chr7.2:44971517-44971536 None:intergenic 30.0%
TGTGACGTTAAATATGTATC+TGG - chr7.2:44971748-44971767 None:intergenic 30.0%
TTCAACAAACAAAATCTCTC+TGG - chr7.2:44971593-44971612 None:intergenic 30.0%
! ACTCAAAAATTCTTTTGGTG+GGG - chr7.2:44971143-44971162 None:intergenic 30.0%
! CAAGTATGATAATGATAGAC+AGG - chr7.2:44971859-44971878 None:intergenic 30.0%
!! AGAGAGATTTTGTTTGTTGA+AGG + chr7.2:44971592-44971611 MS.gene45948:CDS 30.0%
!! AGATTTTGTTTGTTGAAGGA+GGG + chr7.2:44971596-44971615 MS.gene45948:CDS 30.0%
!! ATCATACTTGCTATAATTCC+CGG + chr7.2:44971869-44971888 MS.gene45948:CDS 30.0%
!!! ATTGTTGTGGTTTTGATGAT+AGG + chr7.2:44971920-44971939 MS.gene45948:CDS 30.0%
!!! ATTTCAAGCTTTTGAAGTAG+TGG - chr7.2:44971253-44971272 None:intergenic 30.0%
!!! GATTTTGAAGCAGAATACTT+AGG - chr7.2:44971970-44971989 None:intergenic 30.0%
AAAAGGACCATCAGTATACA+TGG + chr7.2:44972011-44972030 MS.gene45948:CDS 35.0%
AAGCTTGAAATCACACACAT+TGG + chr7.2:44971262-44971281 MS.gene45948:CDS 35.0%
AATTACGTTGAGAGTTATGG+TGG + chr7.2:44970715-44970734 MS.gene45948:CDS 35.0%
AGAGAAGAAACATCTGAAGA+GGG + chr7.2:44971529-44971548 MS.gene45948:CDS 35.0%
ATACATGGTTACAGATGACT+TGG + chr7.2:44972026-44972045 MS.gene45948:CDS 35.0%
ATCTGATGTAGAGGAAAAAG+TGG + chr7.2:44972110-44972129 MS.gene45948:CDS 35.0%
ATTTGTCAAAGCAGAAGTTG+AGG - chr7.2:44972277-44972296 None:intergenic 35.0%
CTCTATTCTTAAACTCTGGT+TGG - chr7.2:44971513-44971532 None:intergenic 35.0%
GAGGAAAAAGTGGTTAGAAT+TGG + chr7.2:44972120-44972139 MS.gene45948:CDS 35.0%
GATTGTGTTAGAAAGCAAAG+TGG + chr7.2:44971052-44971071 MS.gene45948:CDS 35.0%
TAGAGAAGAAACATCTGAAG+AGG + chr7.2:44971528-44971547 MS.gene45948:CDS 35.0%
TCAACTTCTGCTTTGACAAA+TGG + chr7.2:44972276-44972295 MS.gene45948:CDS 35.0%
TCTGCAGAAATTGGTAAAGT+TGG - chr7.2:44971829-44971848 None:intergenic 35.0%
TCTGTAACCATGTATACTGA+TGG - chr7.2:44972021-44972040 None:intergenic 35.0%
TTTATGCACAAATACCTGCA+AGG + chr7.2:44970925-44970944 MS.gene45948:CDS 35.0%
! AAGAATCAAAAGTGCAGTTG+CGG + chr7.2:44971094-44971113 MS.gene45948:CDS 35.0%
! ACTGTGATGCCTAATGTTTT+TGG + chr7.2:44971217-44971236 MS.gene45948:CDS 35.0%
! ATGATAATGATAGACAGGCA+AGG - chr7.2:44971854-44971873 None:intergenic 35.0%
! TAGATGTGAAATAGCATCGA+AGG - chr7.2:44972070-44972089 None:intergenic 35.0%
! TTTAGGAAATGGCTTTGCTA+AGG + chr7.2:44971162-44971181 MS.gene45948:CDS 35.0%
! TTTTCCTCTACATCAGATAG+AGG - chr7.2:44972108-44972127 None:intergenic 35.0%
!! GAGATTTTGTTTGTTGAAGG+AGG + chr7.2:44971595-44971614 MS.gene45948:CDS 35.0%
!! GATTTTGTTTGTTGAAGGAG+GGG + chr7.2:44971597-44971616 MS.gene45948:CDS 35.0%
AAGAAACATCTGAAGAGGGT+AGG + chr7.2:44971533-44971552 MS.gene45948:CDS 40.0%
AGCTCAAATTGTGCTGCAAT+GGG - chr7.2:44971799-44971818 None:intergenic 40.0%
AGTCTTGCAATAGTCCCTAA+GGG - chr7.2:44970818-44970837 None:intergenic 40.0%
TAAGCTTCCATAGAGCTTCT+TGG - chr7.2:44970965-44970984 None:intergenic 40.0%
TGTTGAAATCAGCAAGCAAG+AGG + chr7.2:44971303-44971322 MS.gene45948:intron 40.0%
! AGTTTTCTAACCTTCCCCTT+GGG + chr7.2:44971643-44971662 MS.gene45948:CDS 40.0%
! TAGTTTTCTAACCTTCCCCT+TGG + chr7.2:44971642-44971661 MS.gene45948:CDS 40.0%
! TGAAATAGCATCGAAGGATG+AGG - chr7.2:44972064-44972083 None:intergenic 40.0%
!! ATACTTGCTATAATTCCCGG+TGG + chr7.2:44971872-44971891 MS.gene45948:CDS 40.0%
AGCTTCTTTACCTTGCCCTT+AGG + chr7.2:44970800-44970819 MS.gene45948:CDS 45.0%
CGTTCCTCTATCTGATGTAG+AGG + chr7.2:44972101-44972120 MS.gene45948:CDS 45.0%
GAGCTCAAATTGTGCTGCAA+TGG - chr7.2:44971800-44971819 None:intergenic 45.0%
GAGTCTTGCAATAGTCCCTA+AGG - chr7.2:44970819-44970838 None:intergenic 45.0%
GCTTCTTTACCTTGCCCTTA+GGG + chr7.2:44970801-44970820 MS.gene45948:CDS 45.0%
GGTTAGAATTGGTGTGAACG+AGG + chr7.2:44972131-44972150 MS.gene45948:CDS 45.0%
TCAAATTGTGCTGCAATGGG+AGG - chr7.2:44971796-44971815 None:intergenic 45.0%
TCTGTATGCTGAAGCAGTGA+AGG + chr7.2:44970757-44970776 MS.gene45948:CDS 45.0%
! ATAGCATCGAAGGATGAGGT+TGG - chr7.2:44972060-44972079 None:intergenic 45.0%
! CTTTTGGTGGGGACATTACT+AGG - chr7.2:44971132-44971151 None:intergenic 45.0%
! GCAGGGTCTCAGCATTTTTA+AGG + chr7.2:44972242-44972261 MS.gene45948:intron 45.0%
! GGCAAGGTATCTGCAGAAAT+TGG - chr7.2:44971838-44971857 None:intergenic 45.0%
! GTTTTCTAACCTTCCCCTTG+GGG + chr7.2:44971644-44971663 MS.gene45948:CDS 45.0%
! TTTTCTAACCTTCCCCTTGG+GGG + chr7.2:44971645-44971664 MS.gene45948:CDS 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.2:44971667-44971686 MS.gene45948:CDS 45.0%
ACAATCCCACTTCTCGCACA+CGG - chr7.2:44971038-44971057 None:intergenic 50.0%
ATATGCAACACTCCCCCCAA+GGG - chr7.2:44971661-44971680 None:intergenic 50.0%
TACGAAGAGAGCGAATCCAC+CGG - chr7.2:44971891-44971910 None:intergenic 50.0%
TGCAATAGTCCCTAAGGGCA+AGG - chr7.2:44970813-44970832 None:intergenic 50.0%
TTTCTAACCTTCCCCTTGGG+GGG + chr7.2:44971646-44971665 MS.gene45948:CDS 50.0%
ACGAAGAGAGCGAATCCACC+GGG - chr7.2:44971890-44971909 None:intergenic 55.0%
CATATGCAACACTCCCCCCA+AGG - chr7.2:44971662-44971681 None:intergenic 55.0%
CTGCAGCAGCATTTCCTTGC+AGG - chr7.2:44970942-44970961 None:intergenic 55.0%
GCTGCAGCCAAGAAGCTCTA+TGG + chr7.2:44970955-44970974 MS.gene45948:CDS 55.0%
TATGCAACACTCCCCCCAAG+GGG - chr7.2:44971660-44971679 None:intergenic 55.0%
AGCACGCCGTGTGCGAGAAG+TGG + chr7.2:44971029-44971048 MS.gene45948:CDS 65.0%
CAACACTCCCCCCAAGGGGA+AGG - chr7.2:44971656-44971675 None:intergenic 65.0%
GCACGCCGTGTGCGAGAAGT+GGG + chr7.2:44971030-44971049 MS.gene45948:CDS 65.0%
TCGCACACGGCGTGCTGCAA+AGG - chr7.2:44971025-44971044 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44970674 44972341 44970674 ID=MS.gene45948
chr7.2 mRNA 44970674 44972341 44970674 ID=MS.gene45948.t1;Parent=MS.gene45948
chr7.2 exon 44970674 44971303 44970674 ID=MS.gene45948.t1.exon1;Parent=MS.gene45948.t1
chr7.2 CDS 44970674 44971303 44970674 ID=cds.MS.gene45948.t1;Parent=MS.gene45948.t1
chr7.2 exon 44971412 44972152 44971412 ID=MS.gene45948.t1.exon2;Parent=MS.gene45948.t1
chr7.2 CDS 44971412 44972152 44971412 ID=cds.MS.gene45948.t1;Parent=MS.gene45948.t1
chr7.2 exon 44972246 44972341 44972246 ID=MS.gene45948.t1.exon3;Parent=MS.gene45948.t1
chr7.2 CDS 44972246 44972341 44972246 ID=cds.MS.gene45948.t1;Parent=MS.gene45948.t1
Gene Sequence

>MS.gene45948

ATGGTTGACGGTGCAACTGAATCTGTTGAACAAAATGACAAAATTACGTTGAGAGTTATGGTGGATAAAGAAAGTAACAAAGTTCTGTATGCTGAAGCAGTGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTTACCTTGCCCTTAGGGACTATTGCAAGACTCGTTGCTACAGACTCAAATATTGAAGCAGTTCAATTTGGCAGCATTAGCTCACTGTATCAAAGTGTAAAAGATCTTGATCAACAATATTTATGCACAAATACCTGCAAGGAAATGCTGCTGCAGCCAAGAAGCTCTATGGAAGCTTATTGTCAAAAGCTCAAACTGAATATGGACGACACAGAACCTTTGCAGCACGCCGTGTGCGAGAAGTGGGATTGTGTTAGAAAGCAAAGTGGAGCCCGTTTGAGCATTTTTAAGAATCAAAAGTGCAGTTGCGGAAAAGTAATGAACCTAGTAATGTCCCCACCAAAAGAATTTTTGAGTTTAGGAAATGGCTTTGCTAAGGAAACCGCCACATTAATCATTTCTGATGATCTTACTGTGATGCCTAATGTTTTTGGAACAATTATACCACTACTTCAAAAGCTTGAAATCACACACATTGGTGCTATTGTTGAAGAATCTGTTGAAATCAGCAAGCAAGAGGCATCCTCTCTATATATAAATCTCATCTTTTTATATCATTATTTTGTTAGTTGATTTTTTTTTCTCATCAAATATTCATTTTTGTAGATAACTGATATTCTCAAGTTGTCATTCGTCTCAAAGACCCCTTTAACTGACTTCGTATTTAAGAAGAAACATTTCTGTGATGAATTTGTCAAGACAAACCAACCAGAGTTTAAGAATAGAGAAGAAACATCTGAAGAGGGTAGGCAGATGTCTGTGAAAGTTTTGCAAAGAAAATCAACCAGAGAGATTTTGTTTGTTGAAGGAGGGGTAGATTTTATTGACTTTATTTTTAGTTTTCTAACCTTCCCCTTGGGGGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAATTTATATAAAAGCGTAACTGAGTTGAGTCCAGATACATATTTAACGTCACAAGAACTTAAAGATAAACTAACTAAGCCTCCCATTGCAGCACAATTTGAGCTCATCAATCCAACTTTACCAATTTCTGCAGATACCTTGCCTGTCTATCATTATCATACTTGCTATAATTCCCGGTGGATTCGCTCTCTTCGTATTACATATTATTGTTGTGGTTTTGATGATAGGTGTGTACTTTTGAATTTTGTTGATCCTAAGTATTCTGCTTCAAAATCATCAAGTTGTAGAGAATTTGCAAAAGGACCATCAGTATACATGGTTACAGATGACTTGGTTGTGACTCCAACCTCATCCTTCGATGCTATTTCACATCTAAAGAGTTTAAACGTTCCTCTATCTGATGTAGAGGAAAAAGTGGTTAGAATTGGTGTGAACGAGGTAATTTACAACTTAAGACTTTTCACGTTGTTATTGCAATTAATTTTCATTTCTATACATTATTACAGTGCTTTATTTGTTTACATGTTGCAGGGTCTCAGCATTTTTAAGGCTTCATTGACCTCAACTTCTGCTTTGACAAATGGTCTCAACCAATTCTTAACAACAACCATTAAGAAAGCAAAATGA
Protein sequence

>MS.gene45948.t1

MVDGATESVEQNDKITLRVMVDKESNKVLYAEAVKDFVDVLFSFFTLPLGTIARLVATDSNIEAVQFGSISSLYQSVKDLDQQYLCTNTCKEMLLQPRSSMEAYCQKLKLNMDDTEPLQHAVCEKWDCVRKQSGARLSIFKNQKCSCGKVMNLVMSPPKEFLSLGNGFAKETATLIISDDLTVMPNVFGTIIPLLQKLEITHIGAIVEESITDILKLSFVSKTPLTDFVFKKKHFCDEFVKTNQPEFKNREETSEEGRQMSVKVLQRKSTREILFVEGGVDFIDFIFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSVTELSPDTYLTSQELKDKLTKPPIAAQFELINPTLPISADTLPVYHYHTCYNSRWIRSLRITYYCCGFDDRCVLLNFVDPKYSASKSSSCREFAKGPSVYMVTDDLVVTPTSSFDAISHLKSLNVPLSDVEEKVVRIGVNEGLSIFKASLTSTSALTNGLNQFLTTTIKKAK