AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45984

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45984.t1 MTR_7g066480 92.791 430 30 1 1 429 1 430 0.0 803
MS.gene45984.t1 MTR_7g066490 82.870 432 55 4 1 429 1 416 0.0 697
MS.gene45984.t1 MTR_7g066260 42.418 455 209 10 16 422 15 464 1.24e-96 298
MS.gene45984.t1 MTR_7g066340 41.372 452 212 10 16 422 12 455 1.54e-96 298
MS.gene45984.t1 MTR_7g066340 27.982 218 124 8 14 229 261 447 2.65e-11 65.9
MS.gene45984.t1 MTR_7g066350 42.152 446 206 10 16 417 9 446 8.32e-93 288
MS.gene45984.t1 MTR_7g062300 37.021 470 217 9 16 417 12 470 2.86e-89 279
MS.gene45984.t1 MTR_7g066410 45.845 349 151 7 16 331 10 353 1.12e-88 279
MS.gene45984.t1 MTR_7g066410 62.651 83 31 0 339 421 431 513 1.15e-22 100
MS.gene45984.t1 MTR_7g066290 40.920 435 223 10 11 421 10 434 4.60e-88 275
MS.gene45984.t1 MTR_7g062280 37.910 488 210 12 16 421 10 486 1.16e-87 275
MS.gene45984.t1 MTR_7g066430 46.471 340 164 6 14 341 2 335 1.98e-87 275
MS.gene45984.t1 MTR_7g066430 53.125 96 43 1 325 420 392 485 5.29e-21 95.5
MS.gene45984.t1 MTR_7g066360 41.964 448 207 11 17 422 15 451 5.35e-87 273
MS.gene45984.t1 MTR_7g012680 39.651 459 200 8 16 422 14 447 1.13e-86 271
MS.gene45984.t1 MTR_3g007740 40.611 458 207 13 11 421 4 443 2.95e-86 270
MS.gene45984.t1 MTR_7g063880 37.838 481 208 10 16 427 11 469 3.30e-83 263
MS.gene45984.t1 MTR_7g063660 37.053 475 219 11 16 421 9 472 8.99e-82 259
MS.gene45984.t1 MTR_1g041315 37.868 441 219 8 16 404 14 451 2.24e-81 259
MS.gene45984.t1 MTR_7g063920 37.229 462 191 9 16 420 11 430 9.54e-80 253
MS.gene45984.t1 MTR_7g063670 37.500 472 219 10 4 421 3 452 1.90e-79 253
MS.gene45984.t1 MTR_7g066400 37.748 453 203 10 14 416 10 433 7.94e-77 246
MS.gene45984.t1 MTR_7g063830 39.035 456 216 14 11 421 1 439 3.90e-76 244
MS.gene45984.t1 MTR_7g066570 44.136 324 162 4 17 332 15 327 3.96e-75 245
MS.gene45984.t1 MTR_7g066570 58.333 72 30 0 351 422 411 482 1.73e-16 82.0
MS.gene45984.t1 MTR_7g063900 42.229 341 180 5 12 344 5 336 9.01e-74 239
MS.gene45984.t1 MTR_7g058710 34.949 495 214 11 16 426 12 482 7.79e-73 236
MS.gene45984.t1 MTR_7g058700 37.559 426 190 8 28 416 531 917 1.26e-72 245
MS.gene45984.t1 MTR_7g066310 36.054 441 186 10 16 422 7 385 3.43e-72 233
MS.gene45984.t1 MTR_7g063890 42.340 359 168 10 12 350 21 360 2.12e-70 231
MS.gene45984.t1 MTR_7g063840 42.165 351 180 8 17 357 11 348 1.77e-69 228
MS.gene45984.t1 MTR_7g063820 43.385 325 164 9 17 332 11 324 3.20e-65 217
MS.gene45984.t1 MTR_1g014060 36.881 404 219 6 27 422 11 386 2.45e-63 209
MS.gene45984.t1 MTR_7g066580 41.284 327 151 8 22 341 1 293 1.94e-61 206
MS.gene45984.t1 MTR_7g066580 55.556 63 28 0 351 413 376 438 4.40e-13 71.2
MS.gene45984.t1 MTR_4g019310 34.205 497 227 13 19 426 11 496 1.67e-60 204
MS.gene45984.t1 MTR_4g019340 32.568 479 220 14 17 408 39 501 2.95e-46 167
MS.gene45984.t1 MTR_4g017410 30.228 483 258 11 14 421 7 485 6.49e-46 166
MS.gene45984.t1 MTR_4g017610 29.350 477 235 12 19 413 16 472 2.69e-44 161
MS.gene45984.t1 MTR_2g029400 33.962 318 140 6 16 332 14 262 8.85e-43 155
MS.gene45984.t1 MTR_2g029400 26.190 168 107 3 263 413 15 182 9.97e-12 66.6
MS.gene45984.t1 MTR_2g029400 53.226 62 29 0 348 409 343 404 3.28e-11 65.1
MS.gene45984.t1 MTR_7g066280 30.118 425 167 14 95 422 1 392 4.47e-40 148
MS.gene45984.t1 MTR_3g065200 35.762 302 147 5 15 311 2 261 5.13e-40 149
MS.gene45984.t1 MTR_4g017470 33.824 340 177 6 17 344 13 316 3.09e-39 147
MS.gene45984.t1 MTR_4g017830 34.072 361 200 12 17 353 13 359 3.15e-38 145
MS.gene45984.t1 MTR_4g017830 38.614 101 51 1 320 420 412 501 3.88e-11 65.5
MS.gene45984.t1 MTR_4g017440 31.967 366 193 9 14 344 12 356 6.59e-35 135
MS.gene45984.t1 MTR_7g062270 42.262 168 91 2 17 178 11 178 1.07e-33 130
MS.gene45984.t1 MTR_7g063720 39.000 200 73 3 265 417 26 223 1.60e-33 126
MS.gene45984.t1 MTR_7g063720 28.261 230 140 10 6 229 10 220 2.65e-12 66.6
MS.gene45984.t1 MTR_7g063690 32.967 273 120 8 17 289 13 222 2.34e-28 112
MS.gene45984.t1 MTR_8g023240 29.560 318 191 10 17 323 38 333 1.74e-27 115
MS.gene45984.t1 MTR_4g017550 31.661 319 184 11 30 325 3 310 1.88e-27 114
MS.gene45984.t1 MTR_7g066680 31.090 312 114 8 212 429 37 341 3.77e-26 108
MS.gene45984.t1 MTR_7g066390 47.619 126 60 2 303 423 1 125 1.34e-22 94.0
MS.gene45984.t1 MTR_8g445860 32.787 244 140 9 7 235 4 238 3.63e-22 95.1
MS.gene45984.t1 MTR_1g115440 31.799 239 132 9 16 234 11 238 1.63e-18 84.7
MS.gene45984.t1 MTR_4g019330 37.349 166 89 3 257 412 13 173 1.63e-16 77.8
MS.gene45984.t1 MTR_0150s0010 29.583 240 144 6 12 234 6 237 8.35e-16 77.0
MS.gene45984.t1 MTR_2g067310 37.013 154 62 5 27 179 58 177 5.88e-15 74.7
MS.gene45984.t1 MTR_1g115450 44.318 88 44 1 12 99 3 85 1.46e-13 68.2
MS.gene45984.t1 MTR_7g063850 34.459 148 75 5 186 332 5 131 2.74e-13 70.5
MS.gene45984.t1 MTR_7g063850 39.326 89 54 0 341 429 203 291 3.36e-12 67.4
MS.gene45984.t1 MTR_1g115455 27.984 243 142 7 12 235 5 233 4.76e-13 68.9
MS.gene45984.t1 MTR_0150s0030 41.379 87 45 2 14 99 6 87 3.45e-12 65.9
MS.gene45984.t1 MTR_4g019240 29.825 171 79 3 262 420 13 154 6.22e-12 64.7
MS.gene45984.t1 MTR_7g063760 43.056 72 40 1 356 426 2 73 7.98e-12 61.2
MS.gene45984.t1 MTR_8g445910 40.449 89 47 2 12 99 4 87 4.89e-11 63.5
MS.gene45984.t1 MTR_8g044880 40.449 89 47 2 12 99 4 87 6.09e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45984.t1 AT3G09140 32.525 495 248 12 14 425 7 498 3.13e-56 193
MS.gene45984.t1 AT3G09140 31.154 520 250 13 14 425 7 526 9.95e-54 187
MS.gene45984.t1 AT5G01130 31.304 460 249 11 16 426 9 450 7.78e-50 175
MS.gene45984.t1 AT5G01120 31.006 487 238 12 17 416 10 485 1.30e-49 176
MS.gene45984.t1 AT5G01140 28.361 476 245 8 18 426 11 457 8.69e-46 165
MS.gene45984.t1 AT3G09110 33.438 317 199 4 18 327 11 322 3.59e-45 160
MS.gene45984.t1 AT5G01150 28.810 479 257 11 18 421 11 480 6.55e-42 155
MS.gene45984.t1 AT5G37320 30.435 483 250 17 15 421 8 480 3.15e-40 150
MS.gene45984.t1 AT3G09120 32.407 324 188 7 12 316 2 313 7.45e-40 145
MS.gene45984.t1 AT5G43240 33.333 366 209 11 17 357 10 365 3.81e-37 142
MS.gene45984.t1 AT5G43240 33.333 366 209 11 17 357 10 365 3.81e-37 142
MS.gene45984.t1 AT5G43240 33.333 366 209 11 17 357 10 365 3.81e-37 142

Find 66 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTTTCTGTGAAAATTT+TGG 0.216022 7.2:+44345429 MS.gene45984:CDS
TATTGTTCCATCAAATTAAT+TGG 0.226939 7.2:-44345679 None:intergenic
TTGGATTTAAAATATCTTTC+AGG 0.240482 7.2:-44346771 None:intergenic
CAGTAGCAGCTTCGCTTCTT+AGG 0.241207 7.2:-44345784 None:intergenic
CTTAGACAATAAATCTGATT+TGG 0.246131 7.2:-44346790 None:intergenic
GAGAATTCCTCTCTCTGATT+TGG 0.271322 7.2:+44346935 MS.gene45984:CDS
ATTCAAGAGCATGGTTGATT+TGG 0.281674 7.2:+44346746 MS.gene45984:CDS
TGAGAAATTTGAGAATTATC+AGG 0.305949 7.2:-44345913 None:intergenic
TAAGAAAATTCTGTATGCTT+TGG 0.306163 7.2:+44346617 MS.gene45984:CDS
AAGAAAATTCTGTATGCTTT+GGG 0.312199 7.2:+44346618 MS.gene45984:CDS
AATGTATTGGATTTAGATTT+TGG 0.319002 7.2:+44346531 MS.gene45984:CDS
GGTTCGACCAATTAATTTGA+TGG 0.328737 7.2:+44345672 MS.gene45984:CDS
CAAGAGTCCTTCAACATATA+TGG 0.334427 7.2:+44346848 MS.gene45984:CDS
ACCTCTAACAGACGTATTCT+TGG 0.335993 7.2:+44346473 MS.gene45984:CDS
TTGTCATTGGTTGCAAGAAA+TGG 0.341523 7.2:-44347133 None:intergenic
GGAGTTGAGAACATGTTAAA+TGG 0.344732 7.2:+44346693 MS.gene45984:CDS
GTATCTTGGATGTGAAAATA+TGG 0.345574 7.2:+44345957 MS.gene45984:CDS
TCCAATACATTGACAGGTCT+TGG 0.352633 7.2:-44346519 None:intergenic
GTTTCTCTTCTGAAGTATCT+TGG 0.357240 7.2:+44345943 MS.gene45984:CDS
AGTTTCTTAACTTTGCCATT+AGG 0.370562 7.2:+44345517 MS.gene45984:CDS
AAAATTCTCTTTGTCAAGGT+TGG 0.380539 7.2:-44345623 None:intergenic
ATTTAGTGAAGTGCTCCTTA+TGG 0.380971 7.2:+44346442 MS.gene45984:CDS
GCATGGGAGCACACCTTGTA+AGG 0.388782 7.2:+44346556 MS.gene45984:CDS
CTTCTATTGTTCCCCTTACA+AGG 0.392190 7.2:-44346569 None:intergenic
GCCAAGAATACGTCTGTTAG+AGG 0.398341 7.2:-44346474 None:intergenic
TCATCATCAGCTCTAACTAT+TGG 0.402695 7.2:+44347103 MS.gene45984:CDS
ACCAAGACCTGTCAATGTAT+TGG 0.433905 7.2:+44346518 MS.gene45984:CDS
CAACAAAGTCCTTCCCTGCT+TGG 0.437327 7.2:-44345483 None:intergenic
CACAGAAACTTCAGTGGATG+GGG 0.462605 7.2:-44345419 None:intergenic
GAAGAAAGAATGATTAGCAT+TGG 0.467741 7.2:+44346957 MS.gene45984:CDS
TCTGTTACCATATATGTTGA+AGG 0.472437 7.2:-44346855 None:intergenic
TCTAAATCCAATACATTGAC+AGG 0.482402 7.2:-44346525 None:intergenic
TCAGCTCTAACTATTGGTCT+TGG 0.483988 7.2:+44347109 MS.gene45984:CDS
ACCTAAAATTCTCTTTGTCA+AGG 0.486256 7.2:-44345627 None:intergenic
TTCACAGAAACTTCAGTGGA+TGG 0.488867 7.2:-44345421 None:intergenic
GGAACAAAACCATTCTTAGC+AGG 0.489021 7.2:-44345847 None:intergenic
TAGAGGTGTCGCCGACCATA+AGG 0.500207 7.2:-44346457 None:intergenic
AGTCTTGCAATAGTGCCTAA+TGG 0.507578 7.2:-44345532 None:intergenic
ATAGATTATCTATGTTGTCT+AGG 0.508322 7.2:-44346725 None:intergenic
AAAGGAAATCGCATCGGTAG+AGG 0.509174 7.2:-44346901 None:intergenic
TCACAGAAACTTCAGTGGAT+GGG 0.511080 7.2:-44345420 None:intergenic
AAGGGGAACAATAGAAGTAA+AGG 0.522163 7.2:+44346575 MS.gene45984:CDS
AACATGTTAAATGGAAACTC+TGG 0.523592 7.2:+44346702 MS.gene45984:CDS
ATAAGAAAAGTTGCGGTCAC+CGG 0.523846 7.2:-44345868 None:intergenic
TCTGTATGCTTTGGGTGAAG+AGG 0.540891 7.2:+44346626 MS.gene45984:CDS
GACTGTTGATATCACTCGTA+AGG 0.541024 7.2:+44345996 MS.gene45984:CDS
CTTTCTTCCAAATCAGAGAG+AGG 0.543946 7.2:-44346942 None:intergenic
AACATGAAGAATGTTAGTGT+TGG 0.544227 7.2:+44345571 MS.gene45984:CDS
TGTTCTCAACTCCTCCCAAA+GGG 0.549781 7.2:-44346683 None:intergenic
GATTAGCATTGGCAATAAAG+AGG 0.572173 7.2:+44346968 MS.gene45984:CDS
CATGGGAGCACACCTTGTAA+GGG 0.584012 7.2:+44346557 MS.gene45984:CDS
ATCTGAGATAAGAAAAGTTG+CGG 0.589869 7.2:-44345875 None:intergenic
AGATAATCTATTCAAGAGCA+TGG 0.593603 7.2:+44346737 MS.gene45984:CDS
ATCGCATCGGTAGAGGAACC+TGG 0.597504 7.2:-44346894 None:intergenic
TTTATTTGTCCAAGCAGGGA+AGG 0.601075 7.2:+44345474 MS.gene45984:CDS
AGTGAAGTGCTCCTTATGGT+CGG 0.606083 7.2:+44346446 MS.gene45984:CDS
AACAATAGAAGTAAAGGCAA+TGG 0.611013 7.2:+44346581 MS.gene45984:CDS
GTTACGTAGGAAAGTAGCCA+TGG 0.616515 7.2:-44345383 None:intergenic
ATGTTCTCAACTCCTCCCAA+AGG 0.619718 7.2:-44346684 None:intergenic
GAAAAGAACCTATTTATGTG+AGG 0.621159 7.2:+44345816 MS.gene45984:CDS
AGTCAGAAAGGAAATCGCAT+CGG 0.623415 7.2:-44346907 None:intergenic
ATGGGAGCACACCTTGTAAG+GGG 0.628802 7.2:+44346558 MS.gene45984:CDS
TTGATGACACAGAAAAGTTG+AGG 0.631875 7.2:+44345725 MS.gene45984:CDS
CAAAGCAATTGAAGTTACGT+AGG 0.644804 7.2:-44345396 None:intergenic
TGTTGATATCACTCGTAAGG+AGG 0.661482 7.2:+44345999 MS.gene45984:CDS
GATGACTTAGTCATCACACC+AGG 0.706265 7.2:+44346876 MS.gene45984:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAGAATTTAATTACAA+AGG - chr7.2:44346386-44346405 None:intergenic 10.0%
!!! TTATGTTTTAATTTTTTTTG+TGG + chr7.2:44347042-44347061 MS.gene45984:intron 10.0%
!!! AAATTTTGTGATTGTATTTA+TGG - chr7.2:44346342-44346361 None:intergenic 15.0%
!!! AGATTTTGAAAAAGAATTAT+TGG + chr7.2:44345651-44345670 MS.gene45984:CDS 15.0%
!! GTTATAGACATATAACAATT+TGG + chr7.2:44346213-44346232 MS.gene45984:intron 20.0%
!! TATTGTTCCATCAAATTAAT+TGG - chr7.2:44345682-44345701 None:intergenic 20.0%
!!! AATGTATTGGATTTAGATTT+TGG + chr7.2:44346531-44346550 MS.gene45984:CDS 20.0%
!!! TTGGATTTAAAATATCTTTC+AGG - chr7.2:44346774-44346793 None:intergenic 20.0%
!!! TTTTTTAACCTCACATAAAT+AGG - chr7.2:44345827-44345846 None:intergenic 20.0%
! AAGAAAATTCTGTATGCTTT+GGG + chr7.2:44346618-44346637 MS.gene45984:CDS 25.0%
! ATAGATTATCTATGTTGTCT+AGG - chr7.2:44346728-44346747 None:intergenic 25.0%
! CATTTATATTGTAATCTCCT+AGG - chr7.2:44346192-44346211 None:intergenic 25.0%
! CTTAGACAATAAATCTGATT+TGG - chr7.2:44346793-44346812 None:intergenic 25.0%
! TAAGAAAATTCTGTATGCTT+TGG + chr7.2:44346617-44346636 MS.gene45984:CDS 25.0%
! TGAGAAATTTGAGAATTATC+AGG - chr7.2:44345916-44345935 None:intergenic 25.0%
!! AGCATACAGAATTTTCTTAT+TGG - chr7.2:44346616-44346635 None:intergenic 25.0%
!! CAAGTAAAATCCAATTTTGA+TGG + chr7.2:44346813-44346832 MS.gene45984:CDS 25.0%
!! TGAAGTTTCTGTGAAAATTT+TGG + chr7.2:44345429-44345448 MS.gene45984:CDS 25.0%
!!! AAATTTTTTGACATTCCCTT+TGG + chr7.2:44346668-44346687 MS.gene45984:CDS 25.0%
!!! AATTCTCATTTTAGTCAGAA+AGG - chr7.2:44346922-44346941 None:intergenic 25.0%
!!! AATTTTTTGACATTCCCTTT+GGG + chr7.2:44346669-44346688 MS.gene45984:CDS 25.0%
!!! GATTTGTTTTCCATCAAAAT+TGG - chr7.2:44346826-44346845 None:intergenic 25.0%
!!! GTTTAAGATTTTCTTGTCAT+TGG - chr7.2:44347149-44347168 None:intergenic 25.0%
AAAAAGAAGTTACTTCCCAA+AGG + chr7.2:44346138-44346157 MS.gene45984:intron 30.0%
AAAATTCTCTTTGTCAAGGT+TGG - chr7.2:44345626-44345645 None:intergenic 30.0%
AACAATAGAAGTAAAGGCAA+TGG + chr7.2:44346581-44346600 MS.gene45984:CDS 30.0%
AACATGAAGAATGTTAGTGT+TGG + chr7.2:44345571-44345590 MS.gene45984:CDS 30.0%
AACATGTTAAATGGAAACTC+TGG + chr7.2:44346702-44346721 MS.gene45984:CDS 30.0%
ACAATTCCTATGATTTCCTT+TGG - chr7.2:44346157-44346176 None:intergenic 30.0%
ACCTAAAATTCTCTTTGTCA+AGG - chr7.2:44345630-44345649 None:intergenic 30.0%
AGATAATCTATTCAAGAGCA+TGG + chr7.2:44346737-44346756 MS.gene45984:CDS 30.0%
AGTTTCTTAACTTTGCCATT+AGG + chr7.2:44345517-44345536 MS.gene45984:CDS 30.0%
CAATTCCTATGATTTCCTTT+GGG - chr7.2:44346156-44346175 None:intergenic 30.0%
CATAAGAAACATGAACTTGT+CGG - chr7.2:44347027-44347046 None:intergenic 30.0%
GAAAAGAACCTATTTATGTG+AGG + chr7.2:44345816-44345835 MS.gene45984:CDS 30.0%
GAAGAAAGAATGATTAGCAT+TGG + chr7.2:44346957-44346976 MS.gene45984:CDS 30.0%
GTATCTTGGATGTGAAAATA+TGG + chr7.2:44345957-44345976 MS.gene45984:CDS 30.0%
GTTAAAAAACCTGCTAAGAA+TGG + chr7.2:44345838-44345857 MS.gene45984:CDS 30.0%
TCTAAATCCAATACATTGAC+AGG - chr7.2:44346528-44346547 None:intergenic 30.0%
TCTGTTACCATATATGTTGA+AGG - chr7.2:44346858-44346877 None:intergenic 30.0%
! AATTTTCACAGAAACTTCAG+TGG - chr7.2:44345428-44345447 None:intergenic 30.0%
! ACCTTGACAAAGAGAATTTT+AGG + chr7.2:44345626-44345645 MS.gene45984:CDS 30.0%
! ATCTGAGATAAGAAAAGTTG+CGG - chr7.2:44345878-44345897 None:intergenic 30.0%
!! AAGTTGAGGTCTTTTAATTG+TGG + chr7.2:44345739-44345758 MS.gene45984:CDS 30.0%
!! GATTTAGATTTTGGTAGCAT+GGG + chr7.2:44346540-44346559 MS.gene45984:CDS 30.0%
!!! AAAGTTTTATTTGTCCAAGC+AGG + chr7.2:44345469-44345488 MS.gene45984:CDS 30.0%
!!! AAGTTTTATTTGTCCAAGCA+GGG + chr7.2:44345470-44345489 MS.gene45984:CDS 30.0%
!!! AATTTTTTTTGTGGAACTGC+AGG + chr7.2:44347051-44347070 MS.gene45984:intron 30.0%
AAGGGGAACAATAGAAGTAA+AGG + chr7.2:44346575-44346594 MS.gene45984:CDS 35.0%
CAAAGCAATTGAAGTTACGT+AGG - chr7.2:44345399-44345418 None:intergenic 35.0%
CAAGAGTCCTTCAACATATA+TGG + chr7.2:44346848-44346867 MS.gene45984:CDS 35.0%
GGAGTTGAGAACATGTTAAA+TGG + chr7.2:44346693-44346712 MS.gene45984:CDS 35.0%
TACTTCCCAAAGGAAATCAT+AGG + chr7.2:44346148-44346167 MS.gene45984:intron 35.0%
! ATTCAAGAGCATGGTTGATT+TGG + chr7.2:44346746-44346765 MS.gene45984:CDS 35.0%
! ATTTAGTGAAGTGCTCCTTA+TGG + chr7.2:44346442-44346461 MS.gene45984:CDS 35.0%
! GGTTCGACCAATTAATTTGA+TGG + chr7.2:44345672-44345691 MS.gene45984:CDS 35.0%
! TCATCATCAGCTCTAACTAT+TGG + chr7.2:44347103-44347122 MS.gene45984:CDS 35.0%
! TGTAATCTCCTAGGATTAGT+AGG - chr7.2:44346183-44346202 None:intergenic 35.0%
! TTGATGACACAGAAAAGTTG+AGG + chr7.2:44345725-44345744 MS.gene45984:CDS 35.0%
! TTGTCATTGGTTGCAAGAAA+TGG - chr7.2:44347136-44347155 None:intergenic 35.0%
!! GATTAGCATTGGCAATAAAG+AGG + chr7.2:44346968-44346987 MS.gene45984:CDS 35.0%
!! GGATTTAGATTTTGGTAGCA+TGG + chr7.2:44346539-44346558 MS.gene45984:CDS 35.0%
!! GTTTCTCTTCTGAAGTATCT+TGG + chr7.2:44345943-44345962 MS.gene45984:CDS 35.0%
!!! TGCTAAGAATGGTTTTGTTC+CGG + chr7.2:44345849-44345868 MS.gene45984:CDS 35.0%
ACCAAGACCTGTCAATGTAT+TGG + chr7.2:44346518-44346537 MS.gene45984:CDS 40.0%
ACCTCTAACAGACGTATTCT+TGG + chr7.2:44346473-44346492 MS.gene45984:CDS 40.0%
ACTAGTATGCCTGAACTTCT+TGG - chr7.2:44346311-44346330 None:intergenic 40.0%
AGTCAGAAAGGAAATCGCAT+CGG - chr7.2:44346910-44346929 None:intergenic 40.0%
AGTCTTGCAATAGTGCCTAA+TGG - chr7.2:44345535-44345554 None:intergenic 40.0%
ATAAGAAAAGTTGCGGTCAC+CGG - chr7.2:44345871-44345890 None:intergenic 40.0%
ATTGTCCACCTACTAATCCT+AGG + chr7.2:44346172-44346191 MS.gene45984:intron 40.0%
CATGATTTCCCAAGAAGTTC+AGG + chr7.2:44346299-44346318 MS.gene45984:intron 40.0%
CTAGTATGCCTGAACTTCTT+GGG - chr7.2:44346310-44346329 None:intergenic 40.0%
CTTCTATTGTTCCCCTTACA+AGG - chr7.2:44346572-44346591 None:intergenic 40.0%
CTTTCTTCCAAATCAGAGAG+AGG - chr7.2:44346945-44346964 None:intergenic 40.0%
GACTGTTGATATCACTCGTA+AGG + chr7.2:44345996-44346015 MS.gene45984:CDS 40.0%
GAGAATTCCTCTCTCTGATT+TGG + chr7.2:44346935-44346954 MS.gene45984:CDS 40.0%
GGAACAAAACCATTCTTAGC+AGG - chr7.2:44345850-44345869 None:intergenic 40.0%
TCACAGAAACTTCAGTGGAT+GGG - chr7.2:44345423-44345442 None:intergenic 40.0%
TCCAATACATTGACAGGTCT+TGG - chr7.2:44346522-44346541 None:intergenic 40.0%
TGTTGATATCACTCGTAAGG+AGG + chr7.2:44345999-44346018 MS.gene45984:CDS 40.0%
TTCACAGAAACTTCAGTGGA+TGG - chr7.2:44345424-44345443 None:intergenic 40.0%
TTTATTTGTCCAAGCAGGGA+AGG + chr7.2:44345474-44345493 MS.gene45984:CDS 40.0%
! AATCTCCTAGGATTAGTAGG+TGG - chr7.2:44346180-44346199 None:intergenic 40.0%
! TCAGCTCTAACTATTGGTCT+TGG + chr7.2:44347109-44347128 MS.gene45984:CDS 40.0%
! TTTTTGACATTCCCTTTGGG+AGG + chr7.2:44346672-44346691 MS.gene45984:CDS 40.0%
ATGTTCTCAACTCCTCCCAA+AGG - chr7.2:44346687-44346706 None:intergenic 45.0%
CACAGAAACTTCAGTGGATG+GGG - chr7.2:44345422-44345441 None:intergenic 45.0%
GATGACTTAGTCATCACACC+AGG + chr7.2:44346876-44346895 MS.gene45984:CDS 45.0%
GCCAAGAATACGTCTGTTAG+AGG - chr7.2:44346477-44346496 None:intergenic 45.0%
TGTTCTCAACTCCTCCCAAA+GGG - chr7.2:44346686-44346705 None:intergenic 45.0%
! AAAGGAAATCGCATCGGTAG+AGG - chr7.2:44346904-44346923 None:intergenic 45.0%
! AGTGAAGTGCTCCTTATGGT+CGG + chr7.2:44346446-44346465 MS.gene45984:CDS 45.0%
! TCTGTATGCTTTGGGTGAAG+AGG + chr7.2:44346626-44346645 MS.gene45984:CDS 45.0%
CAACAAAGTCCTTCCCTGCT+TGG - chr7.2:44345486-44345505 None:intergenic 50.0%
CAGTAGCAGCTTCGCTTCTT+AGG - chr7.2:44345787-44345806 None:intergenic 50.0%
! ATGGGAGCACACCTTGTAAG+GGG + chr7.2:44346558-44346577 MS.gene45984:CDS 50.0%
! CATGGGAGCACACCTTGTAA+GGG + chr7.2:44346557-44346576 MS.gene45984:CDS 50.0%
! ATCGCATCGGTAGAGGAACC+TGG - chr7.2:44346897-44346916 None:intergenic 55.0%
! GCATGGGAGCACACCTTGTA+AGG + chr7.2:44346556-44346575 MS.gene45984:CDS 55.0%
!! TAGAGGTGTCGCCGACCATA+AGG - chr7.2:44346460-44346479 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44345385 44347171 44345385 ID=MS.gene45984
chr7.2 mRNA 44345385 44347171 44345385 ID=MS.gene45984.t1;Parent=MS.gene45984
chr7.2 exon 44345385 44346020 44345385 ID=MS.gene45984.t1.exon1;Parent=MS.gene45984.t1
chr7.2 CDS 44345385 44346020 44345385 ID=cds.MS.gene45984.t1;Parent=MS.gene45984.t1
chr7.2 exon 44346435 44346989 44346435 ID=MS.gene45984.t1.exon2;Parent=MS.gene45984.t1
chr7.2 CDS 44346435 44346989 44346435 ID=cds.MS.gene45984.t1;Parent=MS.gene45984.t1
chr7.2 exon 44347073 44347171 44347073 ID=MS.gene45984.t1.exon3;Parent=MS.gene45984.t1
chr7.2 CDS 44347073 44347171 44347073 ID=cds.MS.gene45984.t1;Parent=MS.gene45984.t1
Gene Sequence

>MS.gene45984

ATGGCTACTTTCCTACGTAACTTCAATTGCTTTGCCCCATCCACTGAAGTTTCTGTGAAAATTTTGGTAGATGAAGTCAGAAACAAAGTTTTATTTGTCCAAGCAGGGAAGGACTTTGTTGATGTGCTGCTAAGTTTCTTAACTTTGCCATTAGGCACTATTGCAAGACTTTTGAGTCAAGAATCTAACATGAAGAATGTTAGTGTTGGAAGCTTAAGCTTGTTATATCAAAGTGTTTCCAACCTTGACAAAGAGAATTTTAGGTCAGATTTTGAAAAAGAATTATTGGTTCGACCAATTAATTTGATGGAACAATATTGCAAGTATCTAAAACTCAACATTGATGACACAGAAAAGTTGAGGTCTTTTAATTGTGGCAAACAAAAGTGCATTGATATACCTAAGAAGCGAAGCTGCTACTGCTGTGAAAAGAAAAGAACCTATTTATGTGAGGTTAAAAAACCTGCTAAGAATGGTTTTGTTCCGGTGACCGCAACTTTTCTTATCTCAGATGATTTGAATGTGAAGCCTGATAATTCTCAAATTTCTCAAAATAGTGTTTCTCTTCTGAAGTATCTTGGATGTGAAAATATGGATTCTATCAAGATAGTGACTGTTGATATCACTCGTAAGGAGGTATCTATCTCTTTTGAAAATTCTCAATACTCTTGTATAATTTATGTCTAATCTAATGTGATTTTCTTTGCTTTAAAATTTACTAAAAACACTTTATGAATATAGACGAAAAAACGTAAAAAGAAGTTACTTCCCAAAGGAAATCATAGGAATTGTCCACCTACTAATCCTAGGAGATTACAATATAAATGTGTTATAGACATATAACAATTTGGTAGAAATATGCTGTAATTTGTATCTACTTTCATGTTGCATATATTGAAAGTTATAGAATTTTACATGATTTCCCAAGAAGTTCAGGCATACTAGTACTATCATCCATAAATACAATCACAAAATTTTGTTCAAATTTATCTAAATTTCCTTTGTAATTAAATTCTAAAATGTATAACATTGTACATTGCTTTATTGTAGATACTAGATTTAGTGAAGTGCTCCTTATGGTCGGCGACACCTCTAACAGACGTATTCTTGGCGAAGAAACTGTTTATTGAGAAACCAAGACCTGTCAATGTATTGGATTTAGATTTTGGTAGCATGGGAGCACACCTTGTAAGGGGAACAATAGAAGTAAAGGCAATGGTGAGAAAATCCAATAAGAAAATTCTGTATGCTTTGGGTGAAGAGGACTTTGCAGACTTGTTACTAAATTTTTTGACATTCCCTTTGGGAGGAGTTGAGAACATGTTAAATGGAAACTCTGGCCTAGACAACATAGATAATCTATTCAAGAGCATGGTTGATTTGGATCCTGAAAGATATTTTAAATCCAAATCAGATTTATTGTCTAAGCAAGTAAAATCCAATTTTGATGGAAAACAAATCATCAAGAGTCCTTCAACATATATGGTAACAGATGACTTAGTCATCACACCAGGTTCCTCTACCGATGCGATTTCCTTTCTGACTAAAATGAGAATTCCTCTCTCTGATTTGGAAGAAAGAATGATTAGCATTGGCAATAAAGAGGTAAATTGCTGTTGTCGATTTCATTTCTTTTATTCCGACAAGTTCATGTTTCTTATGTTTTAATTTTTTTTGTGGAACTGCAGGCTCATAGTCTTCTTAAAGCTTCTTTGATCTCATCATCAGCTCTAACTATTGGTCTTGGTCCATTTCTTGCAACCAATGACAAGAAAATCTTAAACTAA
Protein sequence

>MS.gene45984.t1

MATFLRNFNCFAPSTEVSVKILVDEVRNKVLFVQAGKDFVDVLLSFLTLPLGTIARLLSQESNMKNVSVGSLSLLYQSVSNLDKENFRSDFEKELLVRPINLMEQYCKYLKLNIDDTEKLRSFNCGKQKCIDIPKKRSCYCCEKKRTYLCEVKKPAKNGFVPVTATFLISDDLNVKPDNSQISQNSVSLLKYLGCENMDSIKIVTVDITRKEILDLVKCSLWSATPLTDVFLAKKLFIEKPRPVNVLDLDFGSMGAHLVRGTIEVKAMVRKSNKKILYALGEEDFADLLLNFLTFPLGGVENMLNGNSGLDNIDNLFKSMVDLDPERYFKSKSDLLSKQVKSNFDGKQIIKSPSTYMVTDDLVITPGSSTDAISFLTKMRIPLSDLEERMISIGNKEAHSLLKASLISSSALTIGLGPFLATNDKKILN