Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99470.t1 | RHN58993.1 | 78.3 | 539 | 101 | 5 | 1 | 528 | 1 | 534 | 2.50E-224 | 788.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99470.t1 | A0A396I2M9 | 78.3 | 539 | 101 | 5 | 1 | 528 | 1 | 534 | 1.8e-224 | 788.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99470.t1 | MTR_4g017830 | 72.264 | 530 | 140 | 4 | 1 | 526 | 1 | 527 | 0.0 | 749 |
MS.gene99470.t1 | MTR_4g019340 | 75.665 | 489 | 85 | 5 | 12 | 489 | 37 | 502 | 0.0 | 704 |
MS.gene99470.t1 | MTR_4g019340 | 28.571 | 245 | 139 | 7 | 273 | 494 | 41 | 272 | 1.85e-13 | 73.2 |
MS.gene99470.t1 | MTR_4g017440 | 64.314 | 510 | 172 | 6 | 1 | 504 | 1 | 506 | 0.0 | 626 |
MS.gene99470.t1 | MTR_4g017410 | 61.748 | 515 | 159 | 7 | 8 | 509 | 4 | 493 | 0.0 | 601 |
MS.gene99470.t1 | MTR_4g017610 | 59.476 | 496 | 180 | 6 | 1 | 496 | 1 | 475 | 0.0 | 567 |
MS.gene99470.t1 | MTR_4g017470 | 59.345 | 519 | 161 | 8 | 1 | 509 | 1 | 479 | 0.0 | 562 |
MS.gene99470.t1 | MTR_4g017550 | 64.744 | 468 | 146 | 9 | 40 | 500 | 18 | 473 | 0.0 | 562 |
MS.gene99470.t1 | MTR_4g019310 | 43.590 | 507 | 254 | 15 | 1 | 496 | 1 | 486 | 5.17e-121 | 365 |
MS.gene99470.t1 | MTR_7g066340 | 35.000 | 540 | 270 | 15 | 3 | 528 | 2 | 474 | 5.55e-84 | 268 |
MS.gene99470.t1 | MTR_7g066260 | 35.940 | 537 | 268 | 16 | 9 | 527 | 11 | 489 | 1.00e-81 | 263 |
MS.gene99470.t1 | MTR_7g066570 | 36.450 | 524 | 273 | 19 | 1 | 504 | 1 | 484 | 2.33e-78 | 256 |
MS.gene99470.t1 | MTR_7g066410 | 35.373 | 523 | 290 | 14 | 9 | 500 | 7 | 512 | 8.73e-77 | 251 |
MS.gene99470.t1 | MTR_7g066350 | 34.851 | 505 | 252 | 13 | 7 | 496 | 3 | 445 | 2.63e-74 | 243 |
MS.gene99470.t1 | MTR_7g066350 | 29.435 | 248 | 149 | 8 | 270 | 509 | 9 | 238 | 1.02e-16 | 83.2 |
MS.gene99470.t1 | MTR_7g058710 | 31.689 | 527 | 295 | 12 | 1 | 506 | 1 | 483 | 3.69e-73 | 241 |
MS.gene99470.t1 | MTR_7g066430 | 35.283 | 513 | 280 | 16 | 14 | 503 | 5 | 488 | 5.86e-73 | 241 |
MS.gene99470.t1 | MTR_7g012680 | 34.674 | 522 | 247 | 17 | 2 | 504 | 3 | 449 | 2.20e-70 | 232 |
MS.gene99470.t1 | MTR_7g012680 | 26.506 | 249 | 132 | 8 | 258 | 494 | 2 | 211 | 1.09e-13 | 73.6 |
MS.gene99470.t1 | MTR_1g041315 | 34.314 | 510 | 250 | 18 | 1 | 484 | 1 | 451 | 7.33e-69 | 229 |
MS.gene99470.t1 | MTR_7g066400 | 33.871 | 496 | 240 | 13 | 14 | 496 | 13 | 433 | 1.69e-68 | 227 |
MS.gene99470.t1 | MTR_7g066360 | 34.381 | 541 | 278 | 17 | 1 | 528 | 1 | 477 | 1.41e-65 | 221 |
MS.gene99470.t1 | MTR_7g066290 | 33.992 | 506 | 235 | 14 | 9 | 499 | 11 | 432 | 3.51e-65 | 218 |
MS.gene99470.t1 | MTR_7g062280 | 33.459 | 532 | 287 | 18 | 1 | 506 | 1 | 491 | 2.26e-64 | 218 |
MS.gene99470.t1 | MTR_4g019240 | 82.114 | 123 | 20 | 1 | 1 | 123 | 1 | 121 | 4.00e-63 | 204 |
MS.gene99470.t1 | MTR_4g019240 | 94.521 | 73 | 4 | 0 | 458 | 530 | 112 | 184 | 1.62e-36 | 134 |
MS.gene99470.t1 | MTR_7g062300 | 33.398 | 515 | 284 | 17 | 1 | 499 | 1 | 472 | 1.02e-62 | 213 |
MS.gene99470.t1 | MTR_7g063660 | 34.059 | 505 | 284 | 19 | 14 | 506 | 10 | 477 | 1.10e-62 | 213 |
MS.gene99470.t1 | MTR_7g063660 | 30.672 | 238 | 137 | 9 | 265 | 493 | 4 | 222 | 8.02e-17 | 83.6 |
MS.gene99470.t1 | MTR_7g063840 | 32.290 | 511 | 292 | 16 | 8 | 506 | 5 | 473 | 7.29e-61 | 208 |
MS.gene99470.t1 | MTR_7g063880 | 31.670 | 521 | 286 | 18 | 1 | 505 | 1 | 467 | 9.39e-61 | 207 |
MS.gene99470.t1 | MTR_7g063900 | 32.819 | 518 | 294 | 18 | 1 | 500 | 1 | 482 | 2.09e-59 | 204 |
MS.gene99470.t1 | MTR_7g066580 | 31.365 | 491 | 268 | 14 | 19 | 493 | 1 | 438 | 3.25e-57 | 197 |
MS.gene99470.t1 | MTR_7g063830 | 31.818 | 506 | 258 | 17 | 9 | 500 | 6 | 438 | 1.25e-55 | 193 |
MS.gene99470.t1 | MTR_7g063890 | 33.463 | 514 | 286 | 17 | 6 | 500 | 22 | 498 | 5.44e-53 | 187 |
MS.gene99470.t1 | MTR_7g063820 | 32.700 | 526 | 292 | 17 | 1 | 506 | 1 | 484 | 8.03e-53 | 186 |
MS.gene99470.t1 | MTR_7g063920 | 30.000 | 510 | 279 | 13 | 1 | 506 | 1 | 436 | 4.48e-52 | 183 |
MS.gene99470.t1 | MTR_2g029400 | 29.960 | 494 | 232 | 12 | 9 | 488 | 10 | 403 | 5.32e-49 | 174 |
MS.gene99470.t1 | MTR_2g029400 | 36.036 | 111 | 62 | 3 | 258 | 361 | 4 | 112 | 6.52e-11 | 64.7 |
MS.gene99470.t1 | MTR_7g063670 | 29.923 | 518 | 266 | 15 | 12 | 506 | 14 | 457 | 9.76e-48 | 172 |
MS.gene99470.t1 | MTR_7g066490 | 30.488 | 492 | 236 | 15 | 14 | 500 | 17 | 407 | 2.25e-47 | 170 |
MS.gene99470.t1 | MTR_3g065200 | 30.123 | 488 | 258 | 17 | 14 | 494 | 4 | 415 | 6.88e-47 | 170 |
MS.gene99470.t1 | MTR_7g066280 | 28.989 | 445 | 239 | 14 | 100 | 511 | 1 | 401 | 9.72e-43 | 157 |
MS.gene99470.t1 | MTR_7g058700 | 32.486 | 354 | 168 | 10 | 25 | 353 | 531 | 838 | 8.55e-42 | 160 |
MS.gene99470.t1 | MTR_7g066480 | 35.593 | 354 | 188 | 13 | 14 | 352 | 17 | 345 | 7.40e-41 | 152 |
MS.gene99470.t1 | MTR_7g066480 | 39.806 | 103 | 51 | 2 | 409 | 500 | 319 | 421 | 7.67e-11 | 64.7 |
MS.gene99470.t1 | MTR_3g007740 | 28.516 | 512 | 284 | 17 | 1 | 500 | 1 | 442 | 1.70e-40 | 152 |
MS.gene99470.t1 | MTR_7g066310 | 35.246 | 244 | 114 | 6 | 270 | 511 | 193 | 394 | 1.27e-33 | 132 |
MS.gene99470.t1 | MTR_7g066310 | 37.333 | 150 | 75 | 4 | 14 | 154 | 8 | 147 | 1.56e-22 | 100 |
MS.gene99470.t1 | MTR_7g063720 | 33.191 | 235 | 124 | 4 | 265 | 496 | 18 | 222 | 4.22e-28 | 112 |
MS.gene99470.t1 | MTR_7g066680 | 31.595 | 326 | 152 | 10 | 218 | 496 | 33 | 334 | 2.21e-27 | 113 |
MS.gene99470.t1 | MTR_8g023240 | 24.708 | 514 | 309 | 18 | 6 | 498 | 31 | 487 | 1.80e-26 | 113 |
MS.gene99470.t1 | MTR_7g100420 | 30.699 | 329 | 193 | 9 | 174 | 496 | 94 | 393 | 1.39e-23 | 103 |
MS.gene99470.t1 | MTR_1g014060 | 31.933 | 238 | 133 | 8 | 14 | 241 | 1 | 219 | 2.61e-23 | 102 |
MS.gene99470.t1 | MTR_1g014060 | 33.824 | 204 | 103 | 5 | 300 | 500 | 210 | 384 | 2.04e-17 | 84.7 |
MS.gene99470.t1 | MTR_4g019350 | 51.515 | 99 | 36 | 2 | 328 | 424 | 1 | 89 | 5.71e-23 | 93.6 |
MS.gene99470.t1 | MTR_1g115440 | 28.926 | 242 | 150 | 5 | 11 | 243 | 9 | 237 | 2.42e-21 | 93.6 |
MS.gene99470.t1 | MTR_1g115440 | 30.833 | 240 | 146 | 7 | 264 | 494 | 5 | 233 | 1.66e-19 | 88.2 |
MS.gene99470.t1 | MTR_7g062270 | 35.385 | 195 | 100 | 9 | 8 | 194 | 5 | 181 | 6.95e-21 | 95.1 |
MS.gene99470.t1 | MTR_8g445860 | 31.624 | 234 | 137 | 8 | 270 | 494 | 13 | 232 | 5.79e-20 | 89.7 |
MS.gene99470.t1 | MTR_8g445860 | 30.290 | 241 | 139 | 8 | 14 | 243 | 14 | 236 | 1.07e-18 | 85.9 |
MS.gene99470.t1 | MTR_0150s0010 | 31.034 | 232 | 144 | 7 | 270 | 494 | 10 | 232 | 1.08e-18 | 85.9 |
MS.gene99470.t1 | MTR_0150s0010 | 30.705 | 241 | 141 | 10 | 14 | 243 | 11 | 236 | 2.97e-16 | 79.0 |
MS.gene99470.t1 | MTR_7g063850 | 28.807 | 243 | 151 | 6 | 268 | 506 | 64 | 288 | 1.52e-18 | 86.7 |
MS.gene99470.t1 | MTR_1g115450 | 44.304 | 79 | 42 | 1 | 270 | 346 | 7 | 85 | 4.13e-15 | 72.8 |
MS.gene99470.t1 | MTR_1g115455 | 40.000 | 85 | 49 | 1 | 264 | 346 | 3 | 87 | 1.20e-13 | 70.9 |
MS.gene99470.t1 | MTR_1g115455 | 26.316 | 247 | 140 | 7 | 14 | 243 | 10 | 231 | 5.43e-11 | 63.2 |
MS.gene99470.t1 | MTR_0150s0030 | 38.462 | 91 | 52 | 2 | 264 | 351 | 2 | 91 | 1.37e-13 | 70.5 |
MS.gene99470.t1 | MTR_8g445910 | 39.560 | 91 | 51 | 2 | 264 | 351 | 2 | 91 | 2.81e-13 | 70.5 |
MS.gene99470.t1 | MTR_8g044880 | 39.535 | 86 | 49 | 1 | 264 | 346 | 2 | 87 | 5.12e-13 | 70.1 |
MS.gene99470.t1 | MTR_8g445920 | 42.424 | 66 | 38 | 0 | 270 | 335 | 10 | 75 | 9.20e-13 | 65.1 |
MS.gene99470.t1 | MTR_8g044890 | 42.424 | 66 | 38 | 0 | 270 | 335 | 10 | 75 | 9.20e-13 | 65.1 |
MS.gene99470.t1 | MTR_1g115470 | 43.038 | 79 | 43 | 1 | 270 | 346 | 6 | 84 | 1.79e-11 | 66.6 |
MS.gene99470.t1 | MTR_7g066390 | 38.835 | 103 | 62 | 1 | 428 | 530 | 50 | 151 | 2.93e-11 | 62.4 |
MS.gene99470.t1 | MTR_6g006800 | 60.417 | 48 | 17 | 1 | 1 | 48 | 1 | 46 | 4.33e-11 | 58.9 |
MS.gene99470.t1 | MTR_4g019330 | 42.222 | 90 | 49 | 2 | 417 | 505 | 97 | 184 | 4.54e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99470.t1 | AT5G01120 | 31.558 | 507 | 300 | 14 | 10 | 496 | 6 | 485 | 2.70e-63 | 215 |
MS.gene99470.t1 | AT5G01130 | 33.266 | 493 | 268 | 17 | 9 | 497 | 6 | 441 | 1.22e-61 | 209 |
MS.gene99470.t1 | AT5G01130 | 28.897 | 263 | 150 | 11 | 265 | 516 | 4 | 240 | 1.12e-14 | 76.6 |
MS.gene99470.t1 | AT3G09140 | 32.031 | 512 | 291 | 14 | 12 | 496 | 8 | 489 | 1.12e-57 | 200 |
MS.gene99470.t1 | AT5G43240 | 31.478 | 521 | 278 | 17 | 14 | 496 | 10 | 489 | 1.33e-57 | 200 |
MS.gene99470.t1 | AT5G43240 | 31.478 | 521 | 278 | 17 | 14 | 496 | 10 | 489 | 1.33e-57 | 200 |
MS.gene99470.t1 | AT5G43240 | 31.478 | 521 | 278 | 17 | 14 | 496 | 10 | 489 | 1.33e-57 | 200 |
MS.gene99470.t1 | AT5G01140 | 32.068 | 527 | 288 | 19 | 10 | 528 | 7 | 471 | 7.36e-57 | 197 |
MS.gene99470.t1 | AT5G01150 | 31.862 | 521 | 271 | 18 | 9 | 496 | 6 | 475 | 1.72e-55 | 194 |
MS.gene99470.t1 | AT5G01150 | 27.626 | 257 | 155 | 9 | 265 | 503 | 4 | 247 | 4.78e-13 | 72.0 |
MS.gene99470.t1 | AT3G09140 | 30.037 | 546 | 297 | 15 | 6 | 496 | 2 | 517 | 1.50e-52 | 187 |
MS.gene99470.t1 | AT3G09110 | 36.228 | 334 | 181 | 12 | 9 | 331 | 6 | 318 | 3.30e-50 | 176 |
MS.gene99470.t1 | AT5G37320 | 31.089 | 505 | 283 | 18 | 20 | 501 | 18 | 480 | 3.50e-47 | 171 |
MS.gene99470.t1 | AT3G09120 | 34.161 | 322 | 186 | 10 | 14 | 324 | 7 | 313 | 1.12e-45 | 163 |
MS.gene99470.t1 | AT3G09120 | 30.043 | 233 | 146 | 8 | 270 | 494 | 6 | 229 | 9.36e-22 | 96.7 |
MS.gene99470.t1 | AT5G43240 | 29.722 | 360 | 195 | 10 | 164 | 496 | 17 | 345 | 5.59e-30 | 121 |
Find 105 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGGTCTTTGTTATGGAAAA+TGG | 0.181749 | 4.2:+83281307 | MS.gene99470:CDS |
TAATAAACAGCCTAAGTATT+TGG | 0.203194 | 4.2:+83281252 | MS.gene99470:CDS |
GGAAAATGGGTCATTGTTTC+TGG | 0.204981 | 4.2:+83281321 | MS.gene99470:CDS |
TGGCGGGCTGTCTTTGTTCT+TGG | 0.220660 | 4.2:-83282745 | None:intergenic |
AATCACTTTCTGCTAATTCT+TGG | 0.239902 | 4.2:+83283342 | MS.gene99470:CDS |
AAAGATTGTGCCAAGTTCTT+TGG | 0.297409 | 4.2:+83281357 | MS.gene99470:CDS |
CAAGGGAATGAGGTACAAAA+TGG | 0.301397 | 4.2:+83281286 | MS.gene99470:CDS |
CCCACCGCTATGTATTATTA+TGG | 0.303524 | 4.2:+83283107 | MS.gene99470:CDS |
TTCTGATTTGACTCAATTAC+AGG | 0.305846 | 4.2:+83281414 | MS.gene99470:CDS |
GATTCTGAGAGGAATGGTTT+TGG | 0.314737 | 4.2:-83280831 | None:intergenic |
ATCAACTTGCTAGGAGATCT+TGG | 0.315366 | 4.2:-83283254 | None:intergenic |
TTCCACCCGCAAGATTAAAA+TGG | 0.322308 | 4.2:+83282800 | MS.gene99470:CDS |
ATGCAGATATTGGTGGAATC+AGG | 0.322458 | 4.2:+83281388 | MS.gene99470:CDS |
ATAACTCAGTGTACAAGTTT+AGG | 0.324914 | 4.2:-83283958 | None:intergenic |
CTCTGACTGCTGATGTAAAC+TGG | 0.334051 | 4.2:-83282770 | None:intergenic |
ACAAAATGGGGTCTTTGTTA+TGG | 0.336804 | 4.2:+83281300 | MS.gene99470:CDS |
AGGGTCCATTGTAAAGGTTT+TGG | 0.343635 | 4.2:+83282923 | MS.gene99470:CDS |
AGCTTCCTTACAATACCATT+AGG | 0.351633 | 4.2:+83282903 | MS.gene99470:CDS |
TCTTGGATCCATTGCAGTTA+AGG | 0.368661 | 4.2:-83283237 | None:intergenic |
TAGTGATTCACATGGATTCT+TGG | 0.368785 | 4.2:-83281110 | None:intergenic |
CCCTGTCTCGAAACGATGTT+TGG | 0.373016 | 4.2:+83281053 | MS.gene99470:CDS |
AGTGATTCACATGGATTCTT+GGG | 0.375093 | 4.2:-83281109 | None:intergenic |
GCTTCCTTACAATACCATTA+GGG | 0.381396 | 4.2:+83282904 | MS.gene99470:CDS |
GGAATGTTGAGGGGCTGCTT+TGG | 0.386519 | 4.2:-83283071 | None:intergenic |
GGTGACTTCCATGCAGATAT+TGG | 0.389389 | 4.2:+83281378 | MS.gene99470:CDS |
ATGAGCATTTGTTTGCATAC+AGG | 0.397280 | 4.2:-83281082 | None:intergenic |
AGGAGTGATTTCTAAGACAA+TGG | 0.425580 | 4.2:+83283193 | MS.gene99470:CDS |
CAGCGGCTCATGAGAGGTTA+AGG | 0.429816 | 4.2:-83282697 | None:intergenic |
TCCAAACATCGTTTCGAGAC+AGG | 0.433587 | 4.2:-83281054 | None:intergenic |
CAGGAAGTCACACACAACTT+TGG | 0.438918 | 4.2:+83281433 | MS.gene99470:CDS |
CAGAATCTTGATTGTACTTG+TGG | 0.438965 | 4.2:+83281220 | MS.gene99470:CDS |
TACTTAGGCTGTTTATTAGT+GGG | 0.442373 | 4.2:-83281247 | None:intergenic |
ACTAGTTTGAACACACTTTG+AGG | 0.444744 | 4.2:-83283911 | None:intergenic |
GGGTCTTTGTTATGGAAAAT+GGG | 0.446740 | 4.2:+83281308 | MS.gene99470:CDS |
GAGAGGTTAAGGTGTACTTC+AGG | 0.454254 | 4.2:-83282686 | None:intergenic |
ACTGCTGATGTAAACTGGTT+TGG | 0.459661 | 4.2:-83282765 | None:intergenic |
ACCATTAGGGTCCATTGTAA+AGG | 0.460196 | 4.2:+83282917 | MS.gene99470:CDS |
ATACTTAGGCTGTTTATTAG+TGG | 0.460969 | 4.2:-83281248 | None:intergenic |
CATTGTAGTGAGTGGTTAAG+AGG | 0.465606 | 4.2:-83280958 | None:intergenic |
CCTGGTGTCGCACCACAGTT+TGG | 0.469731 | 4.2:+83283044 | MS.gene99470:CDS |
TGAGCATTTGTTTGCATACA+GGG | 0.475571 | 4.2:-83281081 | None:intergenic |
ACCTTTACAATGGACCCTAA+TGG | 0.477568 | 4.2:-83282918 | None:intergenic |
TTATAGTACAATAGAAATAC+CGG | 0.479232 | 4.2:+83283169 | MS.gene99470:CDS |
CCAAACATCGTTTCGAGACA+GGG | 0.490592 | 4.2:-83281053 | None:intergenic |
TTTCACCTGAGGAATGTTGA+GGG | 0.491518 | 4.2:-83283081 | None:intergenic |
TGCAATGTGTTACTCAATCC+TGG | 0.497575 | 4.2:+83283026 | MS.gene99470:CDS |
AGACCAGCATTATATGTTGT+AGG | 0.499652 | 4.2:+83283302 | MS.gene99470:CDS |
CAAAGTGTGTTCAAACTAGT+AGG | 0.500953 | 4.2:+83283914 | MS.gene99470:CDS |
ATGGAAGTCACCAAAGAACT+TGG | 0.501440 | 4.2:-83281367 | None:intergenic |
CCAAACTGTGGTGCGACACC+AGG | 0.503303 | 4.2:-83283044 | None:intergenic |
AAGGGAATGAGGTACAAAAT+GGG | 0.506381 | 4.2:+83281287 | MS.gene99470:CDS |
GTACAAGAGTGTAGAGAACT+TGG | 0.512946 | 4.2:+83282980 | MS.gene99470:CDS |
CTTTCACTTCAAGATCATCA+AGG | 0.513607 | 4.2:-83283394 | None:intergenic |
GCTGATGTAAACTGGTTTGG+CGG | 0.517872 | 4.2:-83282762 | None:intergenic |
TGAATATTGATGACACTGAA+TGG | 0.522820 | 4.2:+83281149 | MS.gene99470:CDS |
TGGACCCTAATGGTATTGTA+AGG | 0.526033 | 4.2:-83282908 | None:intergenic |
GCCTAAGTATTTGGATTCTG+AGG | 0.526194 | 4.2:+83281261 | MS.gene99470:CDS |
GGAGTGATTTCTAAGACAAT+GGG | 0.529024 | 4.2:+83283194 | MS.gene99470:CDS |
ACATCTTTAATCAACTTGCT+AGG | 0.531332 | 4.2:-83283263 | None:intergenic |
TGGTGGCAAGTGGAAGAGAA+AGG | 0.533657 | 4.2:-83280928 | None:intergenic |
TGCAGATATTGGTGGAATCA+GGG | 0.535787 | 4.2:+83281389 | MS.gene99470:CDS |
TTCAAAATTGTATTTGTCAG+CGG | 0.539322 | 4.2:-83282714 | None:intergenic |
TGCAAAAGCCTTAACTGCAA+TGG | 0.542350 | 4.2:+83283229 | MS.gene99470:CDS |
GTCTTAGAAATCACTCCTCC+CGG | 0.545356 | 4.2:-83283188 | None:intergenic |
TATTTGGATTCTGAGGATCA+AGG | 0.546351 | 4.2:+83281268 | MS.gene99470:CDS |
CAAGTTGATTAAAGATGTGG+TGG | 0.546492 | 4.2:+83283268 | MS.gene99470:CDS |
TCAGAATCATCACCATTCCC+TGG | 0.548385 | 4.2:+83280998 | MS.gene99470:CDS |
ATTTGGATTCTGAGGATCAA+GGG | 0.554569 | 4.2:+83281269 | MS.gene99470:CDS |
TTTCACTTCAAGATCATCAA+GGG | 0.554864 | 4.2:-83283393 | None:intergenic |
TCTCCTACAACATATAATGC+TGG | 0.557766 | 4.2:-83283305 | None:intergenic |
TAGAGAACTTGGACTCTTCG+TGG | 0.558135 | 4.2:+83282991 | MS.gene99470:CDS |
GCAGCCCCTCAACATTCCTC+AGG | 0.561565 | 4.2:+83283076 | MS.gene99470:CDS |
AGTGGTTAAGAGGCGAATGA+TGG | 0.568429 | 4.2:-83280948 | None:intergenic |
CTGATGTAAACTGGTTTGGC+GGG | 0.571436 | 4.2:-83282761 | None:intergenic |
TTGATGTCAAAGAAGCTGCT+AGG | 0.575782 | 4.2:-83283825 | None:intergenic |
TAGCAAGTTGATTAAAGATG+TGG | 0.577463 | 4.2:+83283265 | MS.gene99470:CDS |
TATGAAGATTCTGAGAGGAA+TGG | 0.577641 | 4.2:-83280837 | None:intergenic |
TTCTGAGGATCAAGGGAATG+AGG | 0.578929 | 4.2:+83281276 | MS.gene99470:CDS |
TCAAAATCTACACTCACTAG+TGG | 0.579892 | 4.2:+83283844 | MS.gene99470:CDS |
ACCATCCAAAACCTTTACAA+TGG | 0.583435 | 4.2:-83282928 | None:intergenic |
TCCTCAGAATCCAAATACTT+AGG | 0.586676 | 4.2:-83281262 | None:intergenic |
TTGTTGATCATTGTAGTGAG+TGG | 0.592297 | 4.2:-83280966 | None:intergenic |
GACTTCCATGCAGATATTGG+TGG | 0.595400 | 4.2:+83281381 | MS.gene99470:CDS |
AGGGAATGGTGATGATTCTG+AGG | 0.599183 | 4.2:-83280996 | None:intergenic |
ACCATAATAATACATAGCGG+TGG | 0.605154 | 4.2:-83283108 | None:intergenic |
TTCACCTGAGGAATGTTGAG+GGG | 0.607189 | 4.2:-83283080 | None:intergenic |
ATTTGTCAGCGGCTCATGAG+AGG | 0.608178 | 4.2:-83282703 | None:intergenic |
AGGCGAATGATGGTGGCAAG+TGG | 0.611394 | 4.2:-83280938 | None:intergenic |
GATAAGCATTGGTGAAGCTG+AGG | 0.615886 | 4.2:+83283418 | MS.gene99470:CDS |
CCATAATAATACATAGCGGT+GGG | 0.618665 | 4.2:-83283107 | None:intergenic |
GGTTAAGAGGCGAATGATGG+TGG | 0.624838 | 4.2:-83280945 | None:intergenic |
TGGTACAAGAAAGCAAGAGA+AGG | 0.627443 | 4.2:+83283127 | MS.gene99470:CDS |
TTCACTTCAAGATCATCAAG+GGG | 0.628276 | 4.2:-83283392 | None:intergenic |
TGATTCCACCAATATCTGCA+TGG | 0.636872 | 4.2:-83281386 | None:intergenic |
GAAGTGAAAGTGATAAGCAT+TGG | 0.646678 | 4.2:+83283407 | MS.gene99470:CDS |
ACACAACTTTGGAAAGCAAG+AGG | 0.646892 | 4.2:+83281444 | MS.gene99470:CDS |
AGGGAATGAGGTACAAAATG+GGG | 0.649682 | 4.2:+83281288 | MS.gene99470:CDS |
AAGTTGATTAAAGATGTGGT+GGG | 0.652161 | 4.2:+83283269 | MS.gene99470:CDS |
ATGTCAAAGAAGCTGCTAGG+AGG | 0.665227 | 4.2:-83283822 | None:intergenic |
TTCTTGCATAGTGATTCACA+TGG | 0.666554 | 4.2:-83281118 | None:intergenic |
TGCTTTGGACAACCAAACTG+TGG | 0.670639 | 4.2:-83283056 | None:intergenic |
TTGTCTATGAAGATTCTGAG+AGG | 0.671175 | 4.2:-83280842 | None:intergenic |
TATAGTACAATAGAAATACC+GGG | 0.703320 | 4.2:+83283170 | MS.gene99470:CDS |
TGTACCATAATAATACATAG+CGG | 0.764106 | 4.2:-83283111 | None:intergenic |
AGTACAATAGAAATACCGGG+AGG | 0.798359 | 4.2:+83283173 | MS.gene99470:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTAAAACTCATTAT+CGG | - | chr4.2:83281658-83281677 | None:intergenic | 10.0% |
!! | AAAAAGATAATGTAATAAGT+AGG | + | chr4.2:83282476-83282495 | MS.gene99470:intron | 15.0% |
!! | TTAATATTGTAGTAAAATGA+GGG | + | chr4.2:83281770-83281789 | MS.gene99470:intron | 15.0% |
!!! | TTTTTTTAAAACTCATTATC+GGG | - | chr4.2:83281657-83281676 | None:intergenic | 15.0% |
!! | AAAGATTCATAATTCAAGTA+TGG | - | chr4.2:83282571-83282590 | None:intergenic | 20.0% |
!! | CTTAATATTGTAGTAAAATG+AGG | + | chr4.2:83281769-83281788 | MS.gene99470:intron | 20.0% |
!! | TTATAGTACAATAGAAATAC+CGG | + | chr4.2:83283169-83283188 | MS.gene99470:CDS | 20.0% |
!!! | AAAAGAGTACTTAATCATTT+TGG | - | chr4.2:83283742-83283761 | None:intergenic | 20.0% |
!!! | AACTTAAGATAGTTTGTATT+TGG | + | chr4.2:83282597-83282616 | MS.gene99470:intron | 20.0% |
!!! | TTTTTAGTAAACAATCATGT+TGG | + | chr4.2:83283480-83283499 | MS.gene99470:intron | 20.0% |
! | AAAGAATAGGAAGAAAAGTA+AGG | + | chr4.2:83282410-83282429 | MS.gene99470:intron | 25.0% |
! | ACTGTTAATAAACAAAACAG+TGG | + | chr4.2:83282092-83282111 | MS.gene99470:intron | 25.0% |
! | AGTTTATGATAAATCATGAG+TGG | + | chr4.2:83282130-83282149 | MS.gene99470:intron | 25.0% |
! | GAGAACATTCATTAAGATTA+AGG | + | chr4.2:83282377-83282396 | MS.gene99470:intron | 25.0% |
! | TAAGGTTCATAATTCAAGAA+CGG | - | chr4.2:83282292-83282311 | None:intergenic | 25.0% |
! | TAATAAACAGCCTAAGTATT+TGG | + | chr4.2:83281252-83281271 | MS.gene99470:CDS | 25.0% |
! | TAGTAAATTGAGAAAATCGA+TGG | - | chr4.2:83282168-83282187 | None:intergenic | 25.0% |
! | TATAGTACAATAGAAATACC+GGG | + | chr4.2:83283170-83283189 | MS.gene99470:CDS | 25.0% |
! | TGTACCATAATAATACATAG+CGG | - | chr4.2:83283114-83283133 | None:intergenic | 25.0% |
! | TTCAAAATTGTATTTGTCAG+CGG | - | chr4.2:83282717-83282736 | None:intergenic | 25.0% |
!!! | TAACATCCATTTTAATCTTG+CGG | - | chr4.2:83282809-83282828 | None:intergenic | 25.0% |
AATAGGAAGAAAAGTAAGGA+CGG | + | chr4.2:83282414-83282433 | MS.gene99470:intron | 30.0% | |
AATCACTTTCTGCTAATTCT+TGG | + | chr4.2:83283342-83283361 | MS.gene99470:CDS | 30.0% | |
ACTAACATAAGACACATTCA+GGG | - | chr4.2:83283565-83283584 | None:intergenic | 30.0% | |
AGACTAAAATGATCAACGAT+AGG | - | chr4.2:83281909-83281928 | None:intergenic | 30.0% | |
ATACTTAGGCTGTTTATTAG+TGG | - | chr4.2:83281251-83281270 | None:intergenic | 30.0% | |
CCAAACTAACTGATGAATTA+TGG | + | chr4.2:83282032-83282051 | MS.gene99470:intron | 30.0% | |
CCATAATTCATCAGTTAGTT+TGG | - | chr4.2:83282035-83282054 | None:intergenic | 30.0% | |
CCTAAAAACATCAAGCTATA+CGG | - | chr4.2:83282316-83282335 | None:intergenic | 30.0% | |
GTATCAAATTATTGCTCGAA+CGG | + | chr4.2:83281998-83282017 | MS.gene99470:intron | 30.0% | |
TAATAAGTAGGAGCGAATAA+GGG | + | chr4.2:83282488-83282507 | MS.gene99470:intron | 30.0% | |
TACTAACATAAGACACATTC+AGG | - | chr4.2:83283566-83283585 | None:intergenic | 30.0% | |
TACTTAGGCTGTTTATTAGT+GGG | - | chr4.2:83281250-83281269 | None:intergenic | 30.0% | |
TATTTGACTGCTCTTAAAGT+TGG | - | chr4.2:83282199-83282218 | None:intergenic | 30.0% | |
TTAATGAATGTTCTCCTATC+AGG | - | chr4.2:83282372-83282391 | None:intergenic | 30.0% | |
TTGTTGATACTCTTCCTTTA+TGG | + | chr4.2:83283777-83283796 | MS.gene99470:intron | 30.0% | |
TTTCACTTCAAGATCATCAA+GGG | - | chr4.2:83283396-83283415 | None:intergenic | 30.0% | |
! | AAGTTGATTAAAGATGTGGT+GGG | + | chr4.2:83283269-83283288 | MS.gene99470:CDS | 30.0% |
! | ACATCTTTAATCAACTTGCT+AGG | - | chr4.2:83283266-83283285 | None:intergenic | 30.0% |
! | GGCAATATAGTTCTACATTT+CGG | - | chr4.2:83281888-83281907 | None:intergenic | 30.0% |
! | TGAATATTGATGACACTGAA+TGG | + | chr4.2:83281149-83281168 | MS.gene99470:CDS | 30.0% |
! | TTCTGATTTGACTCAATTAC+AGG | + | chr4.2:83281414-83281433 | MS.gene99470:CDS | 30.0% |
!! | AACATCCATTTTAATCTTGC+GGG | - | chr4.2:83282808-83282827 | None:intergenic | 30.0% |
!! | AGGTGTTAACATTTTAGTCT+AGG | + | chr4.2:83281946-83281965 | MS.gene99470:intron | 30.0% |
!! | ATCGTTGATCATTTTAGTCT+AGG | + | chr4.2:83281909-83281928 | MS.gene99470:intron | 30.0% |
!! | CCACAATATAAAGGTTTTAG+AGG | - | chr4.2:83281846-83281865 | None:intergenic | 30.0% |
!! | CCTCTAAAACCTTTATATTG+TGG | + | chr4.2:83281843-83281862 | MS.gene99470:intron | 30.0% |
!! | CGTATAGCTTGATGTTTTTA+GGG | + | chr4.2:83282314-83282333 | MS.gene99470:intron | 30.0% |
!! | GGTGTTAACATTTTAGTCTA+GGG | + | chr4.2:83281947-83281966 | MS.gene99470:intron | 30.0% |
!! | TAGCAAGTTGATTAAAGATG+TGG | + | chr4.2:83283265-83283284 | MS.gene99470:CDS | 30.0% |
!! | TCGTTGATCATTTTAGTCTA+GGG | + | chr4.2:83281910-83281929 | MS.gene99470:intron | 30.0% |
!! | TCTAGGGTTAGTTAAAATTC+AGG | + | chr4.2:83281926-83281945 | MS.gene99470:intron | 30.0% |
!!! | TCAATTTTTTGAGCTTGCAT+TGG | + | chr4.2:83282257-83282276 | MS.gene99470:intron | 30.0% |
AAAACTCATTATCGGGTTCA+AGG | - | chr4.2:83281650-83281669 | None:intergenic | 35.0% | |
AAAGATTGTGCCAAGTTCTT+TGG | + | chr4.2:83281357-83281376 | MS.gene99470:CDS | 35.0% | |
AACATCAAGCTATACGGTTA+AGG | - | chr4.2:83282310-83282329 | None:intergenic | 35.0% | |
AAGGGAATGAGGTACAAAAT+GGG | + | chr4.2:83281287-83281306 | MS.gene99470:CDS | 35.0% | |
ACAAAATGGGGTCTTTGTTA+TGG | + | chr4.2:83281300-83281319 | MS.gene99470:CDS | 35.0% | |
ACAATCTAACATGCCATCTT+GGG | - | chr4.2:83281555-83281574 | None:intergenic | 35.0% | |
ACCATAATAATACATAGCGG+TGG | - | chr4.2:83283111-83283130 | None:intergenic | 35.0% | |
ACCATCCAAAACCTTTACAA+TGG | - | chr4.2:83282931-83282950 | None:intergenic | 35.0% | |
AGACCAGCATTATATGTTGT+AGG | + | chr4.2:83283302-83283321 | MS.gene99470:CDS | 35.0% | |
AGCTTCCTTACAATACCATT+AGG | + | chr4.2:83282903-83282922 | MS.gene99470:CDS | 35.0% | |
AGGTCTATGTGAGAAAGAAT+AGG | + | chr4.2:83282397-83282416 | MS.gene99470:intron | 35.0% | |
AGTGATTCACATGGATTCTT+GGG | - | chr4.2:83281112-83281131 | None:intergenic | 35.0% | |
ATGAGCATTTGTTTGCATAC+AGG | - | chr4.2:83281085-83281104 | None:intergenic | 35.0% | |
CAAAGTGTGTTCAAACTAGT+AGG | + | chr4.2:83283914-83283933 | MS.gene99470:CDS | 35.0% | |
CAGAATCTTGATTGTACTTG+TGG | + | chr4.2:83281220-83281239 | MS.gene99470:CDS | 35.0% | |
CCATAATAATACATAGCGGT+GGG | - | chr4.2:83283110-83283129 | None:intergenic | 35.0% | |
CTTTCACTTCAAGATCATCA+AGG | - | chr4.2:83283397-83283416 | None:intergenic | 35.0% | |
GAAGTGAAAGTGATAAGCAT+TGG | + | chr4.2:83283407-83283426 | MS.gene99470:CDS | 35.0% | |
GCAGTCAAATACATAATTCC+AGG | + | chr4.2:83282208-83282227 | MS.gene99470:intron | 35.0% | |
GCTTCCTTACAATACCATTA+GGG | + | chr4.2:83282904-83282923 | MS.gene99470:CDS | 35.0% | |
GTAATAAGTAGGAGCGAATA+AGG | + | chr4.2:83282487-83282506 | MS.gene99470:intron | 35.0% | |
GTATCTGTTAAGAACCTGAT+AGG | + | chr4.2:83282355-83282374 | MS.gene99470:intron | 35.0% | |
TACAATCTAACATGCCATCT+TGG | - | chr4.2:83281556-83281575 | None:intergenic | 35.0% | |
TAGATTGTAGAGTAAGACCT+TGG | + | chr4.2:83281567-83281586 | MS.gene99470:intron | 35.0% | |
TAGTGATTCACATGGATTCT+TGG | - | chr4.2:83281113-83281132 | None:intergenic | 35.0% | |
TCAAAATCTACACTCACTAG+TGG | + | chr4.2:83283844-83283863 | MS.gene99470:CDS | 35.0% | |
TCCTCAGAATCCAAATACTT+AGG | - | chr4.2:83281265-83281284 | None:intergenic | 35.0% | |
TCTCCTACAACATATAATGC+TGG | - | chr4.2:83283308-83283327 | None:intergenic | 35.0% | |
TGAGCATTTGTTTGCATACA+GGG | - | chr4.2:83281084-83281103 | None:intergenic | 35.0% | |
TGGTCTTCTGTTAATCAGTT+TGG | - | chr4.2:83283599-83283618 | None:intergenic | 35.0% | |
TTCACTTCAAGATCATCAAG+GGG | - | chr4.2:83283395-83283414 | None:intergenic | 35.0% | |
TTCTTGCATAGTGATTCACA+TGG | - | chr4.2:83281121-83281140 | None:intergenic | 35.0% | |
TTGTCTATGAAGATTCTGAG+AGG | - | chr4.2:83280845-83280864 | None:intergenic | 35.0% | |
TTGTTGATCATTGTAGTGAG+TGG | - | chr4.2:83280969-83280988 | None:intergenic | 35.0% | |
! | ACTAGTTTGAACACACTTTG+AGG | - | chr4.2:83283914-83283933 | None:intergenic | 35.0% |
! | ATTTGGATTCTGAGGATCAA+GGG | + | chr4.2:83281269-83281288 | MS.gene99470:CDS | 35.0% |
! | CCGTATAGCTTGATGTTTTT+AGG | + | chr4.2:83282313-83282332 | MS.gene99470:intron | 35.0% |
! | GAAGTCAACAAAGTTTTCAC+TGG | - | chr4.2:83282877-83282896 | None:intergenic | 35.0% |
! | GGGTCTTTGTTATGGAAAAT+GGG | + | chr4.2:83281308-83281327 | MS.gene99470:CDS | 35.0% |
! | TATGAAGATTCTGAGAGGAA+TGG | - | chr4.2:83280840-83280859 | None:intergenic | 35.0% |
! | TATTTGGATTCTGAGGATCA+AGG | + | chr4.2:83281268-83281287 | MS.gene99470:CDS | 35.0% |
! | TTGGATGGTAACTCTTTTGT+CGG | + | chr4.2:83282942-83282961 | MS.gene99470:CDS | 35.0% |
!! | AGGAGTGATTTCTAAGACAA+TGG | + | chr4.2:83283193-83283212 | MS.gene99470:CDS | 35.0% |
!! | ATTCTGAGAGGAATGGTTTT+GGG | - | chr4.2:83280833-83280852 | None:intergenic | 35.0% |
!! | CAAGTTGATTAAAGATGTGG+TGG | + | chr4.2:83283268-83283287 | MS.gene99470:CDS | 35.0% |
!! | CATAATTCCAGGTACTGAAT+TGG | + | chr4.2:83282219-83282238 | MS.gene99470:intron | 35.0% |
!! | GGAGTGATTTCTAAGACAAT+GGG | + | chr4.2:83283194-83283213 | MS.gene99470:CDS | 35.0% |
!! | GTTTTGAATAAACCCCAAGA+TGG | + | chr4.2:83281539-83281558 | MS.gene99470:intron | 35.0% |
!!! | TCCATTGTAAAGGTTTTGGA+TGG | + | chr4.2:83282927-83282946 | MS.gene99470:CDS | 35.0% |
AAGTAAGGACGGAAAGAAAG+CGG | + | chr4.2:83282425-83282444 | MS.gene99470:intron | 40.0% | |
ACCATTAGGGTCCATTGTAA+AGG | + | chr4.2:83282917-83282936 | MS.gene99470:CDS | 40.0% | |
ACCTTTACAATGGACCCTAA+TGG | - | chr4.2:83282921-83282940 | None:intergenic | 40.0% | |
ACTGCTGATGTAAACTGGTT+TGG | - | chr4.2:83282768-83282787 | None:intergenic | 40.0% | |
AGAAGTAAGTGTGAACTGGA+AGG | + | chr4.2:83282515-83282534 | MS.gene99470:intron | 40.0% | |
AGGGAATGAGGTACAAAATG+GGG | + | chr4.2:83281288-83281307 | MS.gene99470:CDS | 40.0% | |
AGTACAATAGAAATACCGGG+AGG | + | chr4.2:83283173-83283192 | MS.gene99470:CDS | 40.0% | |
ATGCAGAAGTAAGTGTGAAC+TGG | + | chr4.2:83282511-83282530 | MS.gene99470:intron | 40.0% | |
ATGCAGATATTGGTGGAATC+AGG | + | chr4.2:83281388-83281407 | MS.gene99470:CDS | 40.0% | |
ATGGAAGTCACCAAAGAACT+TGG | - | chr4.2:83281370-83281389 | None:intergenic | 40.0% | |
CAAGGGAATGAGGTACAAAA+TGG | + | chr4.2:83281286-83281305 | MS.gene99470:CDS | 40.0% | |
CAATCTAACATGCCATCTTG+GGG | - | chr4.2:83281554-83281573 | None:intergenic | 40.0% | |
CATTGTAGTGAGTGGTTAAG+AGG | - | chr4.2:83280961-83280980 | None:intergenic | 40.0% | |
CCCACCGCTATGTATTATTA+TGG | + | chr4.2:83283107-83283126 | MS.gene99470:CDS | 40.0% | |
CTGCAAAGTGCAAACCATAA+AGG | - | chr4.2:83283794-83283813 | None:intergenic | 40.0% | |
GCCTAAGTATTTGGATTCTG+AGG | + | chr4.2:83281261-83281280 | MS.gene99470:CDS | 40.0% | |
GGAAAATGGGTCATTGTTTC+TGG | + | chr4.2:83281321-83281340 | MS.gene99470:CDS | 40.0% | |
GTGACACCATCTCACATTTA+AGG | - | chr4.2:83283507-83283526 | None:intergenic | 40.0% | |
GTTGGTCCTTAAATGTGAGA+TGG | + | chr4.2:83283498-83283517 | MS.gene99470:intron | 40.0% | |
TCTTGGATCCATTGCAGTTA+AGG | - | chr4.2:83283240-83283259 | None:intergenic | 40.0% | |
TGATTCCACCAATATCTGCA+TGG | - | chr4.2:83281389-83281408 | None:intergenic | 40.0% | |
TGCAAAAGCCTTAACTGCAA+TGG | + | chr4.2:83283229-83283248 | MS.gene99470:CDS | 40.0% | |
TGCAGATATTGGTGGAATCA+GGG | + | chr4.2:83281389-83281408 | MS.gene99470:CDS | 40.0% | |
TGGACCCTAATGGTATTGTA+AGG | - | chr4.2:83282911-83282930 | None:intergenic | 40.0% | |
TGGTACAAGAAAGCAAGAGA+AGG | + | chr4.2:83283127-83283146 | MS.gene99470:CDS | 40.0% | |
TTCCACCCGCAAGATTAAAA+TGG | + | chr4.2:83282800-83282819 | MS.gene99470:CDS | 40.0% | |
TTGATGTCAAAGAAGCTGCT+AGG | - | chr4.2:83283828-83283847 | None:intergenic | 40.0% | |
TTTCACCTGAGGAATGTTGA+GGG | - | chr4.2:83283084-83283103 | None:intergenic | 40.0% | |
! | AAGTGTGAACTGGAAGGTTT+TGG | + | chr4.2:83282521-83282540 | MS.gene99470:intron | 40.0% |
! | ACACAACTTTGGAAAGCAAG+AGG | + | chr4.2:83281444-83281463 | MS.gene99470:CDS | 40.0% |
! | AGGGTCCATTGTAAAGGTTT+TGG | + | chr4.2:83282923-83282942 | MS.gene99470:CDS | 40.0% |
! | AGTGTGAACTGGAAGGTTTT+GGG | + | chr4.2:83282522-83282541 | MS.gene99470:intron | 40.0% |
! | CTTTATGGTTTGCACTTTGC+AGG | + | chr4.2:83283792-83283811 | MS.gene99470:intron | 40.0% |
! | GCTTTCGTAGAGGTTTTTGA+TGG | - | chr4.2:83281026-83281045 | None:intergenic | 40.0% |
! | GGGGTCTTTGTTATGGAAAA+TGG | + | chr4.2:83281307-83281326 | MS.gene99470:CDS | 40.0% |
! | GTACAAGAGTGTAGAGAACT+TGG | + | chr4.2:83282980-83282999 | MS.gene99470:CDS | 40.0% |
! | TCTGCTAGTTTGCAGCTTAT+TGG | - | chr4.2:83282457-83282476 | None:intergenic | 40.0% |
! | TGACAGTACTCGCACTTTTA+AGG | + | chr4.2:83283715-83283734 | MS.gene99470:intron | 40.0% |
! | TGCAATGTGTTACTCAATCC+TGG | + | chr4.2:83283026-83283045 | MS.gene99470:CDS | 40.0% |
! | TTTTCACCTGAGGAATGTTG+AGG | - | chr4.2:83283085-83283104 | None:intergenic | 40.0% |
!! | AATTCCAGGTACTGAATTGG+TGG | + | chr4.2:83282222-83282241 | MS.gene99470:intron | 40.0% |
!! | AGAGGTTTTTGATGGTTCCA+GGG | - | chr4.2:83281018-83281037 | None:intergenic | 40.0% |
!! | ATCAACTTGCTAGGAGATCT+TGG | - | chr4.2:83283257-83283276 | None:intergenic | 40.0% |
!! | ATCCATTTTAATCTTGCGGG+TGG | - | chr4.2:83282805-83282824 | None:intergenic | 40.0% |
!! | GATTCTGAGAGGAATGGTTT+TGG | - | chr4.2:83280834-83280853 | None:intergenic | 40.0% |
!! | TAGAGGTTTTTGATGGTTCC+AGG | - | chr4.2:83281019-83281038 | None:intergenic | 40.0% |
!! | TTTTTGATGGTTCCAGGGAA+TGG | - | chr4.2:83281013-83281032 | None:intergenic | 40.0% |
!!! | GTTTTGGGTTCTTCTTGTTG+TGG | - | chr4.2:83280818-83280837 | None:intergenic | 40.0% |
AAGACCAAACGAACCAACGA+AGG | + | chr4.2:83283612-83283631 | MS.gene99470:intron | 45.0% | |
ACCAACGAAGGACACATACA+AGG | + | chr4.2:83283624-83283643 | MS.gene99470:intron | 45.0% | |
ACCGACTAACCCGCAAAATT+CGG | - | chr4.2:83281627-83281646 | None:intergenic | 45.0% | |
AGTGGTTAAGAGGCGAATGA+TGG | - | chr4.2:83280951-83280970 | None:intergenic | 45.0% | |
ATCACCACCAATTCAGTACC+TGG | - | chr4.2:83282229-83282248 | None:intergenic | 45.0% | |
ATGTCAAAGAAGCTGCTAGG+AGG | - | chr4.2:83283825-83283844 | None:intergenic | 45.0% | |
CAGGAAGTCACACACAACTT+TGG | + | chr4.2:83281433-83281452 | MS.gene99470:CDS | 45.0% | |
CAGGAGGATTCAAACTTGAG+AGG | - | chr4.2:83281601-83281620 | None:intergenic | 45.0% | |
CAGTTGCGGCCACAATATAA+AGG | - | chr4.2:83281855-83281874 | None:intergenic | 45.0% | |
CCAAACATCGTTTCGAGACA+GGG | - | chr4.2:83281056-83281075 | None:intergenic | 45.0% | |
CTCTGACTGCTGATGTAAAC+TGG | - | chr4.2:83282773-83282792 | None:intergenic | 45.0% | |
GACTTCCATGCAGATATTGG+TGG | + | chr4.2:83281381-83281400 | MS.gene99470:CDS | 45.0% | |
GAGAGGTTAAGGTGTACTTC+AGG | - | chr4.2:83282689-83282708 | None:intergenic | 45.0% | |
GGTGACTTCCATGCAGATAT+TGG | + | chr4.2:83281378-83281397 | MS.gene99470:CDS | 45.0% | |
GTCTTAGAAATCACTCCTCC+CGG | - | chr4.2:83283191-83283210 | None:intergenic | 45.0% | |
TAGAGAACTTGGACTCTTCG+TGG | + | chr4.2:83282991-83283010 | MS.gene99470:CDS | 45.0% | |
TCAGAATCATCACCATTCCC+TGG | + | chr4.2:83280998-83281017 | MS.gene99470:CDS | 45.0% | |
TCCAAACATCGTTTCGAGAC+AGG | - | chr4.2:83281057-83281076 | None:intergenic | 45.0% | |
TCCTTGTATGTGTCCTTCGT+TGG | - | chr4.2:83283628-83283647 | None:intergenic | 45.0% | |
TTCACCTGAGGAATGTTGAG+GGG | - | chr4.2:83283083-83283102 | None:intergenic | 45.0% | |
TTGGTGAAGCTGAGGTAAAG+TGG | + | chr4.2:83283426-83283445 | MS.gene99470:intron | 45.0% | |
! | AGGGAATGGTGATGATTCTG+AGG | - | chr4.2:83280999-83281018 | None:intergenic | 45.0% |
! | GGGTTTTTACGCTTTCGTAG+AGG | - | chr4.2:83281036-83281055 | None:intergenic | 45.0% |
! | GTGTGAACTGGAAGGTTTTG+GGG | + | chr4.2:83282523-83282542 | MS.gene99470:intron | 45.0% |
! | TGCTTTGGACAACCAAACTG+TGG | - | chr4.2:83283059-83283078 | None:intergenic | 45.0% |
! | TTCTGAGGATCAAGGGAATG+AGG | + | chr4.2:83281276-83281295 | MS.gene99470:CDS | 45.0% |
!! | CTGATGTAAACTGGTTTGGC+GGG | - | chr4.2:83282764-83282783 | None:intergenic | 45.0% |
!! | GATAAGCATTGGTGAAGCTG+AGG | + | chr4.2:83283418-83283437 | MS.gene99470:CDS | 45.0% |
!! | GCTGATGTAAACTGGTTTGG+CGG | - | chr4.2:83282765-83282784 | None:intergenic | 45.0% |
!!! | AGGTTTTAGAGGTCTCTGCA+AGG | - | chr4.2:83281835-83281854 | None:intergenic | 45.0% |
AACCCGCAAAATTCGGCATC+AGG | - | chr4.2:83281620-83281639 | None:intergenic | 50.0% | |
ATTTGTCAGCGGCTCATGAG+AGG | - | chr4.2:83282706-83282725 | None:intergenic | 50.0% | |
CCCTGTCTCGAAACGATGTT+TGG | + | chr4.2:83281053-83281072 | MS.gene99470:CDS | 50.0% | |
GGAGATTGCAACGACAGTTG+TGG | - | chr4.2:83281814-83281833 | None:intergenic | 50.0% | |
GGTTAAGAGGCGAATGATGG+TGG | - | chr4.2:83280948-83280967 | None:intergenic | 50.0% | |
TCGGTCTACAACTGCAGTTG+CGG | - | chr4.2:83281869-83281888 | None:intergenic | 50.0% | |
TGGTGGCAAGTGGAAGAGAA+AGG | - | chr4.2:83280931-83280950 | None:intergenic | 50.0% | |
! | CCTCCTGATGCCGAATTTTG+CGG | + | chr4.2:83281614-83281633 | MS.gene99470:intron | 50.0% |
! | CTCCTGATGCCGAATTTTGC+GGG | + | chr4.2:83281615-83281634 | MS.gene99470:intron | 50.0% |
!! | GTGTCCTTCGTTGGTTCGTT+TGG | - | chr4.2:83283619-83283638 | None:intergenic | 50.0% |
!!! | AGGTTTTGGGGCACTAACTC+TGG | + | chr4.2:83282535-83282554 | MS.gene99470:intron | 50.0% |
!!! | GCCGAATTTTGCGGGTTAGT+CGG | + | chr4.2:83281623-83281642 | MS.gene99470:intron | 50.0% |
CAGCGGCTCATGAGAGGTTA+AGG | - | chr4.2:83282700-83282719 | None:intergenic | 55.0% | |
CCGCAAAATTCGGCATCAGG+AGG | - | chr4.2:83281617-83281636 | None:intergenic | 55.0% | |
GGAATGTTGAGGGGCTGCTT+TGG | - | chr4.2:83283074-83283093 | None:intergenic | 55.0% | |
! | CTTGAGAGGAGCACACTCCA+AGG | - | chr4.2:83281587-83281606 | None:intergenic | 55.0% |
!! | AGGCGAATGATGGTGGCAAG+TGG | - | chr4.2:83280941-83280960 | None:intergenic | 55.0% |
!! | TGGCGGGCTGTCTTTGTTCT+TGG | - | chr4.2:83282748-83282767 | None:intergenic | 55.0% |
CCAAACTGTGGTGCGACACC+AGG | - | chr4.2:83283047-83283066 | None:intergenic | 60.0% | |
GCAGCCCCTCAACATTCCTC+AGG | + | chr4.2:83283076-83283095 | MS.gene99470:CDS | 60.0% | |
! | GCGGTGGGTGTTTTCACCTG+AGG | - | chr4.2:83283095-83283114 | None:intergenic | 60.0% |
!! | CCTGGTGTCGCACCACAGTT+TGG | + | chr4.2:83283044-83283063 | MS.gene99470:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 83280800 | 83283975 | 83280800 | ID=MS.gene99470 |
chr4.2 | mRNA | 83280800 | 83283975 | 83280800 | ID=MS.gene99470.t1;Parent=MS.gene99470 |
chr4.2 | exon | 83280800 | 83281465 | 83280800 | ID=MS.gene99470.t1.exon1;Parent=MS.gene99470.t1 |
chr4.2 | CDS | 83280800 | 83281465 | 83280800 | ID=cds.MS.gene99470.t1;Parent=MS.gene99470.t1 |
chr4.2 | exon | 83282675 | 83283439 | 83282675 | ID=MS.gene99470.t1.exon2;Parent=MS.gene99470.t1 |
chr4.2 | CDS | 83282675 | 83283439 | 83282675 | ID=cds.MS.gene99470.t1;Parent=MS.gene99470.t1 |
chr4.2 | exon | 83283814 | 83283975 | 83283814 | ID=MS.gene99470.t1.exon3;Parent=MS.gene99470.t1 |
chr4.2 | CDS | 83283814 | 83283975 | 83283814 | ID=cds.MS.gene99470.t1;Parent=MS.gene99470.t1 |
Gene Sequence |
Protein sequence |