AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037655

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037655.t1 MTR_4g019340 83.910 491 54 3 11 500 37 503 0.0 801
MS.gene037655.t1 MTR_4g017830 75.145 519 116 6 1 517 1 508 0.0 755
MS.gene037655.t1 MTR_4g017410 66.348 523 138 9 1 517 1 491 0.0 650
MS.gene037655.t1 MTR_4g017440 67.315 514 152 6 4 514 6 506 0.0 642
MS.gene037655.t1 MTR_4g017470 62.380 521 148 5 1 517 1 477 0.0 599
MS.gene037655.t1 MTR_4g017550 65.966 476 138 9 39 510 18 473 0.0 579
MS.gene037655.t1 MTR_4g017550 27.888 251 132 10 15 247 250 469 1.07e-11 67.4
MS.gene037655.t1 MTR_4g017610 59.020 510 167 11 2 506 3 475 0.0 556
MS.gene037655.t1 MTR_4g019310 42.529 522 248 15 1 506 1 486 4.61e-118 357
MS.gene037655.t1 MTR_7g066340 33.652 523 262 14 1 509 1 452 9.93e-79 254
MS.gene037655.t1 MTR_7g066410 33.755 554 274 17 3 510 6 512 1.19e-78 256
MS.gene037655.t1 MTR_7g066260 33.589 521 265 14 5 510 8 462 2.41e-78 254
MS.gene037655.t1 MTR_7g066430 35.361 526 277 15 10 512 2 487 1.30e-77 253
MS.gene037655.t1 MTR_7g066570 35.161 529 273 17 5 514 7 484 1.89e-77 254
MS.gene037655.t1 MTR_7g066350 33.984 512 254 12 8 506 5 445 7.81e-76 246
MS.gene037655.t1 MTR_7g058710 31.391 532 300 11 1 516 1 483 5.54e-73 240
MS.gene037655.t1 MTR_7g066400 32.370 519 252 13 1 506 1 433 1.30e-68 227
MS.gene037655.t1 MTR_1g041315 32.308 520 257 16 1 494 1 451 6.66e-68 227
MS.gene037655.t1 MTR_7g062280 33.211 545 281 16 1 516 1 491 2.89e-66 223
MS.gene037655.t1 MTR_7g012680 33.583 533 251 17 1 514 1 449 1.03e-65 220
MS.gene037655.t1 MTR_7g066360 32.950 522 261 15 2 510 4 449 2.64e-63 214
MS.gene037655.t1 MTR_7g063880 32.571 525 286 18 1 515 1 467 1.42e-62 212
MS.gene037655.t1 MTR_7g062300 32.824 524 285 16 1 509 1 472 7.81e-62 210
MS.gene037655.t1 MTR_7g063900 32.824 524 296 17 1 510 1 482 1.13e-60 207
MS.gene037655.t1 MTR_7g063660 32.252 524 279 17 13 516 10 477 3.45e-60 206
MS.gene037655.t1 MTR_7g063660 28.629 248 123 9 276 503 9 222 6.08e-16 80.9
MS.gene037655.t1 MTR_7g066290 36.292 383 199 11 3 367 6 361 5.01e-59 202
MS.gene037655.t1 MTR_7g066580 32.347 507 259 17 18 508 1 439 1.08e-57 198
MS.gene037655.t1 MTR_7g063840 31.286 521 295 16 7 516 5 473 3.04e-56 195
MS.gene037655.t1 MTR_7g066310 28.988 514 219 12 9 510 4 383 9.10e-54 187
MS.gene037655.t1 MTR_7g063890 31.810 525 290 18 6 510 22 498 2.76e-53 188
MS.gene037655.t1 MTR_7g063920 29.468 526 271 15 1 516 1 436 1.64e-52 184
MS.gene037655.t1 MTR_4g019240 76.984 126 22 4 1 124 1 121 3.68e-52 176
MS.gene037655.t1 MTR_4g019240 86.000 50 7 0 468 517 112 161 4.73e-18 82.4
MS.gene037655.t1 MTR_7g063820 31.887 530 301 18 1 516 1 484 6.27e-52 184
MS.gene037655.t1 MTR_2g029400 30.040 496 240 11 8 498 10 403 5.02e-48 171
MS.gene037655.t1 MTR_7g063670 29.887 532 267 19 6 516 11 457 2.83e-47 171
MS.gene037655.t1 MTR_7g063830 29.903 515 279 13 1 510 1 438 4.51e-47 170
MS.gene037655.t1 MTR_3g065200 29.000 500 259 15 13 504 4 415 5.41e-45 164
MS.gene037655.t1 MTR_7g066480 36.364 363 180 13 13 358 17 345 2.38e-43 159
MS.gene037655.t1 MTR_3g007740 29.672 519 279 18 1 510 1 442 6.59e-43 158
MS.gene037655.t1 MTR_7g058700 31.880 367 160 12 24 359 531 838 8.12e-43 163
MS.gene037655.t1 MTR_7g066490 34.091 352 189 10 13 358 17 331 6.38e-39 147
MS.gene037655.t1 MTR_7g066280 27.972 429 251 13 101 510 1 390 9.46e-37 141
MS.gene037655.t1 MTR_7g066280 26.056 284 154 10 7 260 145 402 2.25e-11 66.2
MS.gene037655.t1 MTR_1g014060 33.188 229 117 7 25 243 13 215 1.50e-26 111
MS.gene037655.t1 MTR_1g014060 36.842 209 94 8 306 510 210 384 9.85e-20 91.7
MS.gene037655.t1 MTR_7g066680 30.284 317 164 6 228 506 37 334 1.91e-25 107
MS.gene037655.t1 MTR_4g019350 54.082 98 33 1 334 431 1 86 5.68e-25 99.0
MS.gene037655.t1 MTR_7g063720 31.799 239 124 4 272 506 19 222 3.54e-23 99.0
MS.gene037655.t1 MTR_1g115440 31.008 258 148 8 1 249 1 237 1.59e-21 94.0
MS.gene037655.t1 MTR_1g115440 32.218 239 136 9 276 504 11 233 3.08e-18 84.7
MS.gene037655.t1 MTR_8g445860 30.040 253 120 8 276 504 13 232 1.65e-21 94.0
MS.gene037655.t1 MTR_8g445860 30.417 240 147 5 13 249 14 236 2.32e-21 93.6
MS.gene037655.t1 MTR_8g023240 23.496 532 311 17 6 512 31 491 4.20e-21 97.1
MS.gene037655.t1 MTR_7g063850 26.625 323 198 9 200 518 3 290 1.42e-20 92.4
MS.gene037655.t1 MTR_7g100420 32.632 285 161 9 228 506 134 393 5.02e-20 92.8
MS.gene037655.t1 MTR_7g062270 33.333 207 103 7 1 199 1 180 6.74e-20 92.0
MS.gene037655.t1 MTR_0150s0010 32.645 242 131 10 276 504 10 232 2.41e-19 87.8
MS.gene037655.t1 MTR_0150s0010 29.630 243 148 5 13 249 11 236 2.43e-18 84.7
MS.gene037655.t1 MTR_1g115455 27.711 249 141 5 13 249 10 231 7.32e-14 71.6
MS.gene037655.t1 MTR_1g115455 39.241 79 46 1 276 352 9 87 2.47e-11 64.3
MS.gene037655.t1 MTR_1g115450 41.772 79 44 1 276 352 7 85 8.77e-13 66.2
MS.gene037655.t1 MTR_1g115450 34.483 116 61 1 13 128 8 108 2.44e-12 65.1
MS.gene037655.t1 MTR_0150s0030 37.647 85 49 2 276 357 8 91 4.86e-11 62.8
MS.gene037655.t1 MTR_8g445910 38.824 85 48 2 276 357 8 91 7.95e-11 63.2
MS.gene037655.t1 MTR_6g006800 59.574 47 18 1 1 47 1 46 8.20e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037655.t1 AT5G01120 30.582 533 312 16 9 521 6 500 2.68e-57 199
MS.gene037655.t1 AT3G09140 31.740 523 293 17 9 506 6 489 7.78e-57 197
MS.gene037655.t1 AT3G09140 29.388 245 154 7 272 503 5 243 1.86e-17 85.5
MS.gene037655.t1 AT5G01130 30.648 509 279 16 2 507 4 441 1.38e-54 190
MS.gene037655.t1 AT5G43240 31.262 515 298 15 13 506 10 489 5.77e-53 187
MS.gene037655.t1 AT5G43240 31.262 515 298 15 13 506 10 489 5.77e-53 187
MS.gene037655.t1 AT5G43240 31.262 515 298 15 13 506 10 489 5.77e-53 187
MS.gene037655.t1 AT3G09140 30.127 551 293 18 9 506 6 517 9.41e-52 184
MS.gene037655.t1 AT3G09140 29.327 208 133 5 272 469 5 208 5.42e-15 78.2
MS.gene037655.t1 AT5G01150 30.057 529 289 14 2 506 4 475 1.60e-50 181
MS.gene037655.t1 AT5G01140 30.624 529 288 18 2 521 4 462 6.01e-50 178
MS.gene037655.t1 AT3G09110 32.647 340 191 8 9 337 6 318 4.47e-47 167
MS.gene037655.t1 AT3G09120 34.743 331 187 10 9 330 3 313 2.27e-46 164
MS.gene037655.t1 AT3G09120 29.289 239 144 9 276 504 6 229 4.82e-15 76.6
MS.gene037655.t1 AT5G37320 28.137 526 309 16 7 511 3 480 5.54e-44 162
MS.gene037655.t1 AT5G43240 28.895 353 219 9 168 506 11 345 4.69e-24 104

Find 115 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCGGGTTGTCTTTGTTTA+TGG 0.133466 4.3:+79540412 None:intergenic
AATGATTCACATGGATTCTT+TGG 0.166602 4.3:+79542692 None:intergenic
CATTGTTCTGGTTAGTTAAA+AGG 0.191149 4.3:+79542849 None:intergenic
TAACAGACAGCCTAAGAATT+TGG 0.217430 4.3:-79542549 MS.gene037655:CDS
TTAAACTTTGAATCTTGTTT+TGG 0.273355 4.3:+79539106 None:intergenic
GGTATTGCTGATGCTTTAAA+TGG 0.278450 4.3:-79542500 MS.gene037655:CDS
CTCACCACTGCATATTATTA+TGG 0.284137 4.3:-79540050 MS.gene037655:CDS
AGGCAAGAATTAGCAGAAAA+TGG 0.289230 4.3:+79539801 None:intergenic
CATGCAGATGTTGATGGAAT+TGG 0.293472 4.3:-79542399 MS.gene037655:CDS
TTGTACCCGCGACATTAAAA+TGG 0.294043 4.3:-79540357 MS.gene037655:CDS
GTTGTTGTTGATCATTGTTC+TGG 0.302112 4.3:+79542837 None:intergenic
GTGAAAAGACCCGCATTATA+TGG 0.303770 4.3:-79539849 MS.gene037655:CDS
ATCGATTTGTTAGGAGATCT+TGG 0.333599 4.3:+79539891 None:intergenic
TGTAAATCCCTTTCTTGCTT+TGG 0.338565 4.3:+79540017 None:intergenic
AACAAGATTCAAAGTTTAAG+TGG 0.342512 4.3:-79539102 MS.gene037655:CDS
AGGGTCCATTGTAAAGGTTT+TGG 0.343635 4.3:-79540234 MS.gene037655:CDS
ACCTCACTCCAAACGATGTT+TGG 0.348359 4.3:-79542745 MS.gene037655:CDS
ACTGCTGATGCAAACTGATT+TGG 0.359514 4.3:+79540392 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.362999 4.3:-79540254 MS.gene037655:CDS
GCTTCCTTACAATACCATTA+GGG 0.366821 4.3:-79540253 MS.gene037655:CDS
GAAGATTGTGCCAAGTTCTT+TGG 0.367844 4.3:-79542429 MS.gene037655:CDS
ACATCTTTAATCGATTTGTT+AGG 0.375546 4.3:+79539882 None:intergenic
GAATTTGGATTCTGAGGGTC+AGG 0.378169 4.3:-79542534 MS.gene037655:CDS
CACACACAACATTGGAAAAC+AGG 0.378988 4.3:-79542345 MS.gene037655:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.384748 4.3:+79540086 None:intergenic
CCCTCAGAATCCAAATTCTT+AGG 0.386443 4.3:+79542539 None:intergenic
ATGCAGATGTTGATGGAATT+GGG 0.399870 4.3:-79542398 MS.gene037655:CDS
ACAGGGTTCCAAACATCGTT+TGG 0.403560 4.3:+79542737 None:intergenic
TTCTGATTTGAGTCAATTAG+AGG 0.405222 4.3:-79542372 MS.gene037655:CDS
GTATTGCTGATGCTTTAAAT+GGG 0.415851 4.3:-79542499 MS.gene037655:CDS
CAGAGGCTCATGAGAGGTTA+AGG 0.420057 4.3:+79540460 None:intergenic
ATTCTTAGGCTGTCTGTTAG+TGG 0.430547 4.3:+79542553 None:intergenic
CAGGAACTCCAAAGCAAGAA+AGG 0.438639 4.3:-79540025 MS.gene037655:CDS
CAGAATCTTGATTGTACTTG+TGG 0.438965 4.3:-79542581 MS.gene037655:CDS
ATAAATTGATCCCATTGTCT+TGG 0.445414 4.3:+79539941 None:intergenic
CATCAGGAATGTTGAGGGGC+TGG 0.446417 4.3:+79540081 None:intergenic
TTCTTAGGCTGTCTGTTAGT+GGG 0.446661 4.3:+79542554 None:intergenic
ACCATTAGGGTCCATTGTAA+AGG 0.460196 4.3:-79540240 MS.gene037655:CDS
TCTGAGGGTCAGGGGAATAG+TGG 0.460813 4.3:-79542524 MS.gene037655:CDS
CCTGGTGTCGCACCACAGTT+TGG 0.469731 4.3:-79540113 MS.gene037655:CDS
ACCTTTACAATGGACCCTAA+TGG 0.477568 4.3:+79540239 None:intergenic
GTGGTGAGTGTTTGTACATC+AGG 0.482930 4.3:+79540065 None:intergenic
AACAACATTTGTTTGCAGAC+AGG 0.485916 4.3:+79542719 None:intergenic
CTTGGACTCTTTGTGGTGTA+CGG 0.490020 4.3:-79540159 MS.gene037655:CDS
TAGAGAACTTGGACTCTTTG+TGG 0.493299 4.3:-79540166 MS.gene037655:CDS
GACTTCCATGCAGATGTTGA+TGG 0.493543 4.3:-79542405 MS.gene037655:CDS
GCCTAAGAATTTGGATTCTG+AGG 0.494703 4.3:-79542540 MS.gene037655:CDS
ACAACATTTGTTTGCAGACA+GGG 0.497506 4.3:+79542720 None:intergenic
TACAGTAGAAGTACCGGTAG+TGG 0.499811 4.3:-79539976 MS.gene037655:CDS
ATGGAAGTCACCAAAGAACT+TGG 0.501440 4.3:+79542419 None:intergenic
CCAAACTGTGGTGCGACACC+AGG 0.503303 4.3:+79540113 None:intergenic
TCTTGGATCCATTGCAGTCA+AGG 0.503976 4.3:+79539908 None:intergenic
CGCTCCGTGTTACTCAATCC+TGG 0.504813 4.3:-79540131 MS.gene037655:CDS
GTACAAGAGTGTAGAGAACT+TGG 0.512946 4.3:-79540177 MS.gene037655:CDS
TTAATTCTTTCAAAGATGAA+AGG 0.513759 4.3:+79539781 None:intergenic
GCTGATGCAAACTGATTTGG+CGG 0.519432 4.3:+79540395 None:intergenic
ACTGCATATTATTATGGTAC+AGG 0.522066 4.3:-79540044 MS.gene037655:CDS
TTCAAAATTGCATTTGTCAG+AGG 0.522168 4.3:+79540443 None:intergenic
TGCAAAAGCCTTGACTGCAA+TGG 0.525800 4.3:-79539916 MS.gene037655:CDS
TGGACCCTAATGGTATTGTA+AGG 0.526033 4.3:+79540249 None:intergenic
TAGTAGCAAGTGGAAGAGAA+AGG 0.530533 4.3:+79542879 None:intergenic
AGACCCGCATTATATGGTAT+AGG 0.533415 4.3:-79539843 MS.gene037655:CDS
GGAGTGATTTCCAAGACAAT+GGG 0.534615 4.3:-79539951 MS.gene037655:CDS
CTTTGTTGATCTTGAAGTGA+AGG 0.535902 4.3:-79539751 MS.gene037655:CDS
CAAATCGATTAAAGATGTGG+TGG 0.538504 4.3:-79539877 MS.gene037655:CDS
GATAAGCATTGGTGAGGCTG+AGG 0.538769 4.3:-79539727 MS.gene037655:intron
GAAATCACTCCTCCCACTAC+CGG 0.538904 4.3:+79539963 None:intergenic
TCAAAATTTACACTGACTAG+TGG 0.539589 4.3:-79539151 MS.gene037655:CDS
TGAACATTGATGACACTGAA+TGG 0.541744 4.3:-79542652 MS.gene037655:CDS
TTGTACATCAGGAATGTTGA+GGG 0.542757 4.3:+79540076 None:intergenic
TTCACTTCAAGATCAACAAA+GGG 0.544077 4.3:+79539753 None:intergenic
ATTTACACTGACTAGTGGAC+TGG 0.547720 4.3:-79539146 MS.gene037655:CDS
AGGAGTGATTTCCAAGACAA+TGG 0.549627 4.3:-79539952 MS.gene037655:CDS
GTACTTCTACTGTATTATAA+CGG 0.549710 4.3:+79539985 None:intergenic
TCCAAACATCGTTTGGAGTG+AGG 0.556603 4.3:+79542744 None:intergenic
TAACAAATCGATTAAAGATG+TGG 0.562938 4.3:-79539880 MS.gene037655:CDS
CTTCACTTCAAGATCAACAA+AGG 0.563679 4.3:+79539752 None:intergenic
ACAAGATTCAAAGTTTAAGT+GGG 0.565191 4.3:-79539101 MS.gene037655:CDS
TTCTGAAGAACCACAAGAAG+AGG 0.568246 4.3:-79542999 MS.gene037655:CDS
AGGAACTCCAAAGCAAGAAA+GGG 0.569329 4.3:-79540024 MS.gene037655:CDS
ATTTGGATTCTGAGGGTCAG+GGG 0.580968 4.3:-79542532 MS.gene037655:CDS
GAGGAAGTCACACACAACAT+TGG 0.582955 4.3:-79542353 MS.gene037655:CDS
ACCATCCAAAACCTTTACAA+TGG 0.583435 4.3:+79540229 None:intergenic
CCTAAGAATTTGGATTCTGA+GGG 0.584987 4.3:-79542539 MS.gene037655:CDS
TCAGAATCATCATCATTCCT+CGG 0.589156 4.3:-79542800 MS.gene037655:CDS
ATCTCCTATACCATATAATG+CGG 0.589870 4.3:+79539839 None:intergenic
TCTCCTATACCATATAATGC+GGG 0.591601 4.3:+79539840 None:intergenic
TTATAATACAGTAGAAGTAC+CGG 0.592584 4.3:-79539982 MS.gene037655:CDS
ACAGTAGAAGTACCGGTAGT+GGG 0.598821 4.3:-79539975 MS.gene037655:CDS
CTTCAAGATCAACAAAGGGA+AGG 0.605013 4.3:+79539757 None:intergenic
AAATCGATTAAAGATGTGGT+GGG 0.605850 4.3:-79539876 MS.gene037655:CDS
CTGATGCAAACTGATTTGGC+GGG 0.610508 4.3:+79540396 None:intergenic
AATTTGGATTCTGAGGGTCA+GGG 0.610725 4.3:-79542533 MS.gene037655:CDS
CAATTCCATCAACATCTGCA+TGG 0.613002 4.3:+79542400 None:intergenic
TATTGCTGATGCTTTAAATG+GGG 0.614508 4.3:-79542498 MS.gene037655:CDS
AGGTTAAGGTGTACTTGAGG+AGG 0.616375 4.3:+79540474 None:intergenic
TTCTTGCATAATGATTCACA+TGG 0.617558 4.3:+79542683 None:intergenic
AGGCGAATGATAGTAGCAAG+TGG 0.630753 4.3:+79542869 None:intergenic
TTTGTACATCAGGAATGTTG+AGG 0.634879 4.3:+79540075 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.648287 4.3:+79539170 None:intergenic
GAAAGGGATTTACACTATCG+TGG 0.652207 4.3:-79540008 MS.gene037655:CDS
GAAGTGAAGGTGATAAGCAT+TGG 0.654807 4.3:-79539738 MS.gene037655:CDS
TGCAGATGTTGATGGAATTG+GGG 0.656452 4.3:-79542397 MS.gene037655:CDS
GAGGGTCAGGGGAATAGTGG+TGG 0.663204 4.3:-79542521 MS.gene037655:CDS
GAGAGGTTAAGGTGTACTTG+AGG 0.667782 4.3:+79540471 None:intergenic
ATTTGTCAGAGGCTCATGAG+AGG 0.674703 4.3:+79540454 None:intergenic
TGTACCATAATAATATGCAG+TGG 0.681372 4.3:+79540046 None:intergenic
GTAGAAGTACCGGTAGTGGG+AGG 0.686576 4.3:-79539972 MS.gene037655:CDS
TGTCGCTGTAGAATCAACAA+AGG 0.690298 4.3:-79542927 MS.gene037655:CDS
ACACAACATTGGAAAACAGG+AGG 0.691626 4.3:-79542342 MS.gene037655:intron
TGTACATCAGGAATGTTGAG+GGG 0.709478 4.3:+79540077 None:intergenic
GAAGGTGATAAGCATTGGTG+AGG 0.714369 4.3:-79539733 MS.gene037655:CDS
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4.3:+79539173 None:intergenic
TGGTTTGGACAACCAAACTG+TGG 0.732553 4.3:+79540101 None:intergenic
GACACCAGGATTGAGTAACA+CGG 0.757821 4.3:+79540127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATGTTATATC+GGG - chr4.3:79541536-79541555 MS.gene037655:intron 10.0%
!! TCAAATTAATTAATTGATAA+TGG - chr4.3:79540746-79540765 MS.gene037655:intron 10.0%
!!! AAAATAATCAATAAAAGTAT+TGG + chr4.3:79542533-79542552 None:intergenic 10.0%
!! AAATATTATTGATATAGGTT+GGG - chr4.3:79542702-79542721 MS.gene037655:CDS 15.0%
!!! TTTATAACTTGATGTTTTTA+GGG - chr4.3:79540914-79540933 MS.gene037655:intron 15.0%
!! AATTCAATACCTCAAATTAT+AGG + chr4.3:79540823-79540842 None:intergenic 20.0%
!! AGCAATATTGGAATTAATAT+TGG + chr4.3:79541144-79541163 None:intergenic 20.0%
!! CGTAGAAATATTATTGATAT+AGG - chr4.3:79542697-79542716 MS.gene037655:CDS 20.0%
!! GAAATATTATTGATATAGGT+TGG - chr4.3:79542701-79542720 MS.gene037655:CDS 20.0%
!! GCAATATTGGAATTAATATT+GGG + chr4.3:79541143-79541162 None:intergenic 20.0%
!! TAGAACAACAAATAAACAAA+AGG + chr4.3:79542436-79542455 None:intergenic 20.0%
!! TTAATATTGTAGTAAAGTGA+GGG - chr4.3:79540477-79540496 MS.gene037655:CDS 20.0%
!! TTAATTCTTTCAAAGATGAA+AGG + chr4.3:79542322-79542341 None:intergenic 20.0%
!!! AAAAGTGTTGAAATAGTTAA+AGG - chr4.3:79541354-79541373 MS.gene037655:intron 20.0%
!!! ATAAAAGTATTGGATACTTA+TGG + chr4.3:79542523-79542542 None:intergenic 20.0%
!!! CTTTATAACTTGATGTTTTT+AGG - chr4.3:79540913-79540932 MS.gene037655:intron 20.0%
!!! TAAAAGTATTGGATACTTAT+GGG + chr4.3:79542522-79542541 None:intergenic 20.0%
!!! TATAATTTGAGGTATTGAAT+TGG - chr4.3:79540822-79540841 MS.gene037655:intron 20.0%
!!! TTAAACTTTGAATCTTGTTT+TGG + chr4.3:79542997-79543016 None:intergenic 20.0%
!!! TTTTTAAAAAACTCGATATC+CGG + chr4.3:79540365-79540384 None:intergenic 20.0%
! AAAGAATAGAAAGGAAAGTA+AGG - chr4.3:79541012-79541031 MS.gene037655:intron 25.0%
! AACAAGATTCAAAGTTTAAG+TGG - chr4.3:79542998-79543017 MS.gene037655:CDS 25.0%
! AACATCAAGTTATAAAGTGA+AGG + chr4.3:79540910-79540929 None:intergenic 25.0%
! ACAAGATTCAAAGTTTAAGT+GGG - chr4.3:79542999-79543018 MS.gene037655:CDS 25.0%
! ATACAAGATAGTAAACCAAA+CGG + chr4.3:79541479-79541498 None:intergenic 25.0%
! CATATGTATGTATGTTATCT+TGG - chr4.3:79541561-79541580 MS.gene037655:intron 25.0%
! CTCACTTTACTACAATATTA+AGG + chr4.3:79540478-79540497 None:intergenic 25.0%
! CTTAATATTGTAGTAAAGTG+AGG - chr4.3:79540476-79540495 MS.gene037655:CDS 25.0%
! GTACTTCTACTGTATTATAA+CGG + chr4.3:79542118-79542137 None:intergenic 25.0%
! TAACAAATCGATTAAAGATG+TGG - chr4.3:79542220-79542239 MS.gene037655:intron 25.0%
! TAACAATGTCCTATAATTTG+AGG - chr4.3:79540811-79540830 MS.gene037655:intron 25.0%
! TTCGAATGCTATATATATCT+TGG - chr4.3:79542809-79542828 MS.gene037655:CDS 25.0%
!! AAGAGACATAATTGTGTTTT+TGG - chr4.3:79542662-79542681 MS.gene037655:CDS 25.0%
!! AGAGACATAATTGTGTTTTT+GGG - chr4.3:79542663-79542682 MS.gene037655:CDS 25.0%
!! AGGGTAGTTTGTATTTAATT+TGG - chr4.3:79540933-79540952 MS.gene037655:intron 25.0%
!! ATGTCTATTAAGATTTTCAG+TGG + chr4.3:79539138-79539157 None:intergenic 25.0%
!! TTATAATACAGTAGAAGTAC+CGG - chr4.3:79542118-79542137 MS.gene037655:intron 25.0%
!! TTTAAATGGGGTTTTTGTTA+AGG - chr4.3:79539614-79539633 MS.gene037655:intron 25.0%
!!! ACATCTTTAATCGATTTGTT+AGG + chr4.3:79542221-79542240 None:intergenic 25.0%
!!! CCTTTAAAACCTTTATATTG+CGG - chr4.3:79540550-79540569 MS.gene037655:intron 25.0%
!!! TAAGTGTTAGCATTTTAGTT+TGG - chr4.3:79540659-79540678 MS.gene037655:intron 25.0%
!!! TTTACTTTTTGAACTTGCAT+TGG - chr4.3:79540857-79540876 MS.gene037655:intron 25.0%
AAATCGATTAAAGATGTGGT+GGG - chr4.3:79542224-79542243 MS.gene037655:intron 30.0%
AACATGTTATGAAACAGACA+CGG + chr4.3:79540160-79540179 None:intergenic 30.0%
AATAGAAAGGAAAGTAAGGA+GGG - chr4.3:79541016-79541035 MS.gene037655:intron 30.0%
AATGATTCACATGGATTCTT+TGG + chr4.3:79539411-79539430 None:intergenic 30.0%
ACTGCATATTATTATGGTAC+AGG - chr4.3:79542056-79542075 MS.gene037655:intron 30.0%
ATAAATTGATCCCATTGTCT+TGG + chr4.3:79542162-79542181 None:intergenic 30.0%
ATCTCCTATACCATATAATG+CGG + chr4.3:79542264-79542283 None:intergenic 30.0%
CGATGCTGATAAAATTTGAA+GGG + chr4.3:79540113-79540132 None:intergenic 30.0%
CTATGTGAGAAAGAATAGAA+AGG - chr4.3:79541003-79541022 MS.gene037655:intron 30.0%
TATCGAAAATGTAGTGTATC+TGG + chr4.3:79542628-79542647 None:intergenic 30.0%
TATTGCTCATCGTAACAAAT+TGG - chr4.3:79541157-79541176 MS.gene037655:intron 30.0%
TCATATCATACTATGTATCC+AGG - chr4.3:79542867-79542886 MS.gene037655:CDS 30.0%
TCGATGCTGATAAAATTTGA+AGG + chr4.3:79540114-79540133 None:intergenic 30.0%
TGAATCATTGTTCCAAAATG+TGG - chr4.3:79540428-79540447 MS.gene037655:CDS 30.0%
TGATATATCAGAACCTTGAA+GGG - chr4.3:79541057-79541076 MS.gene037655:intron 30.0%
TGTACCATAATAATATGCAG+TGG + chr4.3:79542057-79542076 None:intergenic 30.0%
TTAATGAATGCTCTCTTATC+AGG + chr4.3:79540977-79540996 None:intergenic 30.0%
TTCAAAATTGCATTTGTCAG+AGG + chr4.3:79541660-79541679 None:intergenic 30.0%
TTCACTTCAAGATCAACAAA+GGG + chr4.3:79542350-79542369 None:intergenic 30.0%
TTCTTGCATAATGATTCACA+TGG + chr4.3:79539420-79539439 None:intergenic 30.0%
TTGATATATCAGAACCTTGA+AGG - chr4.3:79541056-79541075 MS.gene037655:intron 30.0%
TTTGTTACGATGAGCAATAT+TGG + chr4.3:79541156-79541175 None:intergenic 30.0%
! ATTATTGATATAGGTTGGGT+GGG - chr4.3:79542706-79542725 MS.gene037655:CDS 30.0%
! CATTGTTCTGGTTAGTTAAA+AGG + chr4.3:79539254-79539273 None:intergenic 30.0%
! GTATTGCTGATGCTTTAAAT+GGG - chr4.3:79539601-79539620 MS.gene037655:intron 30.0%
! TATTATTGATATAGGTTGGG+TGG - chr4.3:79542705-79542724 MS.gene037655:CDS 30.0%
! TATTGCTGATGCTTTAAATG+GGG - chr4.3:79539602-79539621 MS.gene037655:intron 30.0%
! TCAAAATTTACACTGACTAG+TGG - chr4.3:79542949-79542968 MS.gene037655:CDS 30.0%
! TCTTCAAATTTTATCAGCGA+GGG - chr4.3:79539918-79539937 MS.gene037655:CDS 30.0%
! TTCTGATTTGAGTCAATTAG+AGG - chr4.3:79539728-79539747 MS.gene037655:CDS 30.0%
! TTCTTCAAATTTTATCAGCG+AGG - chr4.3:79539917-79539936 MS.gene037655:CDS 30.0%
!! CAGTGTAAATTTTGATGTCA+AGG + chr4.3:79542944-79542963 None:intergenic 30.0%
!! CCGCAATATAAAGGTTTTAA+AGG + chr4.3:79540553-79540572 None:intergenic 30.0%
!! GAGACATAATTGTGTTTTTG+GGG - chr4.3:79542664-79542683 MS.gene037655:CDS 30.0%
!! TAACATCCATTTTAATGTCG+CGG + chr4.3:79541752-79541771 None:intergenic 30.0%
!! TCTGAATTTTTCTTGTTTCG+CGG - chr4.3:79540782-79540801 MS.gene037655:intron 30.0%
!! TGATAAGAGAGCATTCATTA+AGG - chr4.3:79540976-79540995 MS.gene037655:intron 30.0%
!!! AAGTTTTTAGCCTCTTTGAT+AGG - chr4.3:79542455-79542474 MS.gene037655:CDS 30.0%
!!! AGACATAATTGTGTTTTTGG+GGG - chr4.3:79542665-79542684 MS.gene037655:CDS 30.0%
AAAGTGAGGGTAATTGTGTT+CGG - chr4.3:79540490-79540509 MS.gene037655:intron 35.0%
AAATCAAGAGGTAAGAATCC+TGG + chr4.3:79542888-79542907 None:intergenic 35.0%
AAATTAGTAGGTCCTTGAAC+CGG - chr4.3:79540343-79540362 MS.gene037655:CDS 35.0%
AACAACATTTGTTTGCAGAC+AGG + chr4.3:79539384-79539403 None:intergenic 35.0%
AATGTAGTGTATCTGGAAGA+CGG + chr4.3:79542621-79542640 None:intergenic 35.0%
ACAACATTTGTTTGCAGACA+GGG + chr4.3:79539383-79539402 None:intergenic 35.0%
ACACTGTTATTGTTACCGTT+TGG - chr4.3:79541461-79541480 MS.gene037655:intron 35.0%
ACCATCCAAAACCTTTACAA+TGG + chr4.3:79541874-79541893 None:intergenic 35.0%
AGACACACCTTCAATCATAA+GGG + chr4.3:79539841-79539860 None:intergenic 35.0%
AGCTTCCTTACAATACCATT+AGG - chr4.3:79541846-79541865 MS.gene037655:intron 35.0%
AGGCAAGAATTAGCAGAAAA+TGG + chr4.3:79542302-79542321 None:intergenic 35.0%
AGTTTGTAGAGTAAGACCTT+GGG - chr4.3:79540180-79540199 MS.gene037655:CDS 35.0%
ATCTGTACATCAAAAGGACA+GGG + chr4.3:79541600-79541619 None:intergenic 35.0%
ATTGTTCCAAAATGTGGTCA+CGG - chr4.3:79540434-79540453 MS.gene037655:CDS 35.0%
CAAATCGATTAAAGATGTGG+TGG - chr4.3:79542223-79542242 MS.gene037655:intron 35.0%
CAGAATCTTGATTGTACTTG+TGG - chr4.3:79539519-79539538 MS.gene037655:intron 35.0%
CCTAAGAATTTGGATTCTGA+GGG - chr4.3:79539561-79539580 MS.gene037655:intron 35.0%
CTCACCACTGCATATTATTA+TGG - chr4.3:79542050-79542069 MS.gene037655:intron 35.0%
CTTCACTTCAAGATCAACAA+AGG + chr4.3:79542351-79542370 None:intergenic 35.0%
CTTTGTTGATCTTGAAGTGA+AGG - chr4.3:79542349-79542368 MS.gene037655:CDS 35.0%
GAATAGAAAGGAAAGTAAGG+AGG - chr4.3:79541015-79541034 MS.gene037655:intron 35.0%
GATACTTATGGGTAGGTATT+AGG + chr4.3:79542511-79542530 None:intergenic 35.0%
GCTTCCTTACAATACCATTA+GGG - chr4.3:79541847-79541866 MS.gene037655:intron 35.0%
GTATCACATACCTATCAAAG+AGG + chr4.3:79542468-79542487 None:intergenic 35.0%
GTTCAAGGACCTACTAATTT+GGG + chr4.3:79540343-79540362 None:intergenic 35.0%
GTTGAAATAGTTAAAGGACC+TGG - chr4.3:79541360-79541379 MS.gene037655:intron 35.0%
GTTGTAGTCATGTGACTAAA+AGG - chr4.3:79539964-79539983 MS.gene037655:CDS 35.0%
TAACAGACAGCCTAAGAATT+TGG - chr4.3:79539551-79539570 MS.gene037655:intron 35.0%
TAGACACACCTTCAATCATA+AGG + chr4.3:79539842-79539861 None:intergenic 35.0%
TCAGAATCATCATCATTCCT+CGG - chr4.3:79539300-79539319 MS.gene037655:intron 35.0%
TCTCCTATACCATATAATGC+GGG + chr4.3:79542263-79542282 None:intergenic 35.0%
TGTAAATCCCTTTCTTGCTT+TGG + chr4.3:79542086-79542105 None:intergenic 35.0%
TTCAGCATCTGTACATCAAA+AGG + chr4.3:79541606-79541625 None:intergenic 35.0%
TTGTACATCAGGAATGTTGA+GGG + chr4.3:79542027-79542046 None:intergenic 35.0%
TTTGTACATCAGGAATGTTG+AGG + chr4.3:79542028-79542047 None:intergenic 35.0%
! ACAGACTAGTCCACAAAAAT+TGG + chr4.3:79540270-79540289 None:intergenic 35.0%
! AGTATTGGATACTTATGGGT+AGG + chr4.3:79542518-79542537 None:intergenic 35.0%
! ATGCAGATGTTGATGGAATT+GGG - chr4.3:79539702-79539721 MS.gene037655:intron 35.0%
! CATAAGTGTTGCATAAGTGA+CGG + chr4.3:79539876-79539895 None:intergenic 35.0%
! CTTCAAATTTTATCAGCGAG+GGG - chr4.3:79539919-79539938 MS.gene037655:CDS 35.0%
! GAAGTCAACAAAGTTTTCAC+TGG + chr4.3:79541820-79541839 None:intergenic 35.0%
! GGTATTGCTGATGCTTTAAA+TGG - chr4.3:79539600-79539619 MS.gene037655:intron 35.0%
! GTTGTTGTTGATCATTGTTC+TGG + chr4.3:79539266-79539285 None:intergenic 35.0%
! TAGTTTGTAGAGTAAGACCT+TGG - chr4.3:79540179-79540198 MS.gene037655:CDS 35.0%
! TGAACATTGATGACACTGAA+TGG - chr4.3:79539448-79539467 MS.gene037655:intron 35.0%
! TTATGATTGAAGGTGTGTCT+AGG - chr4.3:79539841-79539860 MS.gene037655:CDS 35.0%
! TTATTGATATAGGTTGGGTG+GGG - chr4.3:79542707-79542726 MS.gene037655:CDS 35.0%
! TTGGATGGTAACTCTTTTGT+TGG - chr4.3:79541885-79541904 MS.gene037655:intron 35.0%
!! AACATCCATTTTAATGTCGC+GGG + chr4.3:79541751-79541770 None:intergenic 35.0%
!! ATCGATTTGTTAGGAGATCT+TGG + chr4.3:79542212-79542231 None:intergenic 35.0%
!!! TCCATTGTAAAGGTTTTGGA+TGG - chr4.3:79541870-79541889 MS.gene037655:intron 35.0%
AAAACTCGATATCCGGTTCA+AGG + chr4.3:79540358-79540377 None:intergenic 40.0%
AAGTAAGGAGGGAAATAGAG+CGG - chr4.3:79541027-79541046 MS.gene037655:intron 40.0%
ACACAACATTGGAAAACAGG+AGG - chr4.3:79539758-79539777 MS.gene037655:CDS 40.0%
ACACCTTCAATCATAAGGGT+CGG + chr4.3:79539837-79539856 None:intergenic 40.0%
ACCATTAGGGTCCATTGTAA+AGG - chr4.3:79541860-79541879 MS.gene037655:intron 40.0%
ACCTTTACAATGGACCCTAA+TGG + chr4.3:79541864-79541883 None:intergenic 40.0%
ACTGCTGATGCAAACTGATT+TGG + chr4.3:79541711-79541730 None:intergenic 40.0%
ACTTATGGGTAGGTATTAGG+AGG + chr4.3:79542508-79542527 None:intergenic 40.0%
AGAACTATGTTGTGAAGCGT+CGG - chr4.3:79540601-79540620 MS.gene037655:intron 40.0%
AGACCCGCATTATATGGTAT+AGG - chr4.3:79542257-79542276 MS.gene037655:intron 40.0%
AGGAACTCCAAAGCAAGAAA+GGG - chr4.3:79542076-79542095 MS.gene037655:intron 40.0%
AGGAGTGATTTCCAAGACAA+TGG - chr4.3:79542148-79542167 MS.gene037655:intron 40.0%
AGTCCACAAAAATTGGCACA+AGG + chr4.3:79540263-79540282 None:intergenic 40.0%
ATGGAAGTCACCAAAGAACT+TGG + chr4.3:79539684-79539703 None:intergenic 40.0%
ATTCTTAGGCTGTCTGTTAG+TGG + chr4.3:79539550-79539569 None:intergenic 40.0%
CAATTCCATCAACATCTGCA+TGG + chr4.3:79539703-79539722 None:intergenic 40.0%
CAATTGCAGCCGCAATATAA+AGG + chr4.3:79540562-79540581 None:intergenic 40.0%
CACACACAACATTGGAAAAC+AGG - chr4.3:79539755-79539774 MS.gene037655:CDS 40.0%
CATCTGTACATCAAAAGGAC+AGG + chr4.3:79541601-79541620 None:intergenic 40.0%
CATTGGAAAACAGGAGGTAA+TGG - chr4.3:79539764-79539783 MS.gene037655:CDS 40.0%
CCCTCAGAATCCAAATTCTT+AGG + chr4.3:79539564-79539583 None:intergenic 40.0%
CCTGCAAATTGCAAATCAAG+AGG + chr4.3:79542900-79542919 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr4.3:79540039-79540058 MS.gene037655:CDS 40.0%
CTTATGGGTAGGTATTAGGA+GGG + chr4.3:79542507-79542526 None:intergenic 40.0%
CTTCAAGATCAACAAAGGGA+AGG + chr4.3:79542346-79542365 None:intergenic 40.0%
GAAAGGGATTTACACTATCG+TGG - chr4.3:79542092-79542111 MS.gene037655:intron 40.0%
GAAGATTGTGCCAAGTTCTT+TGG - chr4.3:79539671-79539690 MS.gene037655:intron 40.0%
GAAGTGAAGGTGATAAGCAT+TGG - chr4.3:79542362-79542381 MS.gene037655:CDS 40.0%
GCCTAAGAATTTGGATTCTG+AGG - chr4.3:79539560-79539579 MS.gene037655:intron 40.0%
GCTACTCAAACTGTAATGTC+TGG - chr4.3:79540722-79540741 MS.gene037655:intron 40.0%
GGAGTGATTTCCAAGACAAT+GGG - chr4.3:79542149-79542168 MS.gene037655:intron 40.0%
GGTTCAAGGACCTACTAATT+TGG + chr4.3:79540344-79540363 None:intergenic 40.0%
GTCATGTGACTAAAAGGTCA+CGG - chr4.3:79539970-79539989 MS.gene037655:CDS 40.0%
GTGAAAAGACCCGCATTATA+TGG - chr4.3:79542251-79542270 MS.gene037655:intron 40.0%
GTTGCGTACAATACACCAAA+TGG - chr4.3:79540035-79540054 MS.gene037655:CDS 40.0%
GTTTGTAGAGTAAGACCTTG+GGG - chr4.3:79540181-79540200 MS.gene037655:CDS 40.0%
TAGAGAACTTGGACTCTTTG+TGG - chr4.3:79541934-79541953 MS.gene037655:intron 40.0%
TAGTAGCAAGTGGAAGAGAA+AGG + chr4.3:79539224-79539243 None:intergenic 40.0%
TCATGTGACTAAAAGGTCAC+GGG - chr4.3:79539971-79539990 MS.gene037655:CDS 40.0%
TGGACCCTAATGGTATTGTA+AGG + chr4.3:79541854-79541873 None:intergenic 40.0%
TGTACATCAGGAATGTTGAG+GGG + chr4.3:79542026-79542045 None:intergenic 40.0%
TGTCGCTGTAGAATCAACAA+AGG - chr4.3:79539173-79539192 MS.gene037655:CDS 40.0%
TTCAAATGTGAGACCTTGAG+AGG + chr4.3:79540236-79540255 None:intergenic 40.0%
TTCAACATGACACAGATACG+AGG + chr4.3:79542846-79542865 None:intergenic 40.0%
TTCTTAGGCTGTCTGTTAGT+GGG + chr4.3:79539549-79539568 None:intergenic 40.0%
TTGTACCCGCGACATTAAAA+TGG - chr4.3:79541743-79541762 MS.gene037655:intron 40.0%
! AACAGTGTGTGTGTGTGTTT+TGG + chr4.3:79541449-79541468 None:intergenic 40.0%
! AACCTTGAAGGGTATAGGTT+GGG - chr4.3:79541068-79541087 MS.gene037655:intron 40.0%
! AATTTGGATTCTGAGGGTCA+GGG - chr4.3:79539567-79539586 MS.gene037655:intron 40.0%
! AGGGTCCATTGTAAAGGTTT+TGG - chr4.3:79541866-79541885 MS.gene037655:intron 40.0%
! ATCAGAACCTTGAAGGGTAT+AGG - chr4.3:79541063-79541082 MS.gene037655:intron 40.0%
! ATTTACACTGACTAGTGGAC+TGG - chr4.3:79542954-79542973 MS.gene037655:CDS 40.0%
! CATGCAGATGTTGATGGAAT+TGG - chr4.3:79539701-79539720 MS.gene037655:intron 40.0%
! GGGTTTTTGTTAAGGACACT+GGG - chr4.3:79539622-79539641 MS.gene037655:intron 40.0%
! GTACAAGAGTGTAGAGAACT+TGG - chr4.3:79541923-79541942 MS.gene037655:intron 40.0%
! TGCAGATGTTGATGGAATTG+GGG - chr4.3:79539703-79539722 MS.gene037655:intron 40.0%
! TTCTGAAGAACCACAAGAAG+AGG - chr4.3:79539101-79539120 MS.gene037655:CDS 40.0%
!! ATCGTTTTTGCCTCTTCTTG+TGG + chr4.3:79539114-79539133 None:intergenic 40.0%
!! CCTCTTGATTTGCAATTTGC+AGG - chr4.3:79542897-79542916 MS.gene037655:CDS 40.0%
!! GGTTTTGTACGCTTTCATAG+AGG + chr4.3:79539338-79539357 None:intergenic 40.0%
!! TGTGTGTGTGTGTTTTGGAT+AGG + chr4.3:79541444-79541463 None:intergenic 40.0%
AAAGGACCTGGTTCAAACAG+TGG - chr4.3:79541372-79541391 MS.gene037655:intron 45.0%
AACAGCCTCGTGTGTAAAAC+AGG - chr4.3:79540007-79540026 MS.gene037655:CDS 45.0%
ACAGCCTCGTGTGTAAAACA+GGG - chr4.3:79540008-79540027 MS.gene037655:CDS 45.0%
ACAGGGTTCCAAACATCGTT+TGG + chr4.3:79539366-79539385 None:intergenic 45.0%
ACCTCACTCCAAACGATGTT+TGG - chr4.3:79539355-79539374 MS.gene037655:intron 45.0%
AGGCGAATGATAGTAGCAAG+TGG + chr4.3:79539234-79539253 None:intergenic 45.0%
AGGTTAAGGTGTACTTGAGG+AGG + chr4.3:79541629-79541648 None:intergenic 45.0%
ATTTGTCAGAGGCTCATGAG+AGG + chr4.3:79541649-79541668 None:intergenic 45.0%
CAGGAACTCCAAAGCAAGAA+AGG - chr4.3:79542075-79542094 MS.gene037655:intron 45.0%
CCACAAAAATTGGCACAAGG+AGG + chr4.3:79540260-79540279 None:intergenic 45.0%
CTCGTGTGTAAAACAGGGTA+AGG - chr4.3:79540013-79540032 MS.gene037655:CDS 45.0%
CTTGGACTCTTTGTGGTGTA+CGG - chr4.3:79541941-79541960 MS.gene037655:intron 45.0%
GACACCAGGATTGAGTAACA+CGG + chr4.3:79541976-79541995 None:intergenic 45.0%
GACTTCCATGCAGATGTTGA+TGG - chr4.3:79539695-79539714 MS.gene037655:intron 45.0%
GAGAGGTTAAGGTGTACTTG+AGG + chr4.3:79541632-79541651 None:intergenic 45.0%
GAGGAAGTCACACACAACAT+TGG - chr4.3:79539747-79539766 MS.gene037655:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr4.3:79540038-79540057 MS.gene037655:CDS 45.0%
GTGGTGAGTGTTTGTACATC+AGG + chr4.3:79542038-79542057 None:intergenic 45.0%
TACCCAACCTATACCCTTCA+AGG + chr4.3:79541073-79541092 None:intergenic 45.0%
TATGAAACAGACACGGACAC+TGG + chr4.3:79540153-79540172 None:intergenic 45.0%
TCTTGGATCCATTGCAGTCA+AGG + chr4.3:79542195-79542214 None:intergenic 45.0%
TGCAAAAGCCTTGACTGCAA+TGG - chr4.3:79542184-79542203 MS.gene037655:intron 45.0%
TGTTGCATAAGTGACGGTGT+CGG + chr4.3:79539870-79539889 None:intergenic 45.0%
TTGATGTCAAGGAAGCTGCA+AGG + chr4.3:79542933-79542952 None:intergenic 45.0%
! AGAGGTTTTTGATGCTTCCG+AGG + chr4.3:79539320-79539339 None:intergenic 45.0%
! ATTTGGATTCTGAGGGTCAG+GGG - chr4.3:79539568-79539587 MS.gene037655:intron 45.0%
! CCTCCTTGTGCCAATTTTTG+TGG - chr4.3:79540257-79540276 MS.gene037655:CDS 45.0%
! CTTACCCTGTTTTACACACG+AGG + chr4.3:79540015-79540034 None:intergenic 45.0%
! GAACCTTGAAGGGTATAGGT+TGG - chr4.3:79541067-79541086 MS.gene037655:intron 45.0%
! GAATTTGGATTCTGAGGGTC+AGG - chr4.3:79539566-79539585 MS.gene037655:intron 45.0%
! GGGGTTTTTGTTAAGGACAC+TGG - chr4.3:79539621-79539640 MS.gene037655:intron 45.0%
! TCCAAACATCGTTTGGAGTG+AGG + chr4.3:79539359-79539378 None:intergenic 45.0%
! TGGTTTGGACAACCAAACTG+TGG + chr4.3:79542002-79542021 None:intergenic 45.0%
!! ACAGTAGAAGTACCGGTAGT+GGG - chr4.3:79542125-79542144 MS.gene037655:intron 45.0%
!! CTGATGCAAACTGATTTGGC+GGG + chr4.3:79541707-79541726 None:intergenic 45.0%
!! GAAGGTGATAAGCATTGGTG+AGG - chr4.3:79542367-79542386 MS.gene037655:CDS 45.0%
!! GCTGATGCAAACTGATTTGG+CGG + chr4.3:79541708-79541727 None:intergenic 45.0%
!! GGTTGGTCTCCCAAATTAGT+AGG - chr4.3:79540331-79540350 MS.gene037655:CDS 45.0%
!! GTGCAGCTCTGGCTTTAATT+GGG - chr4.3:79540288-79540307 MS.gene037655:CDS 45.0%
!! TACAGTAGAAGTACCGGTAG+TGG - chr4.3:79542124-79542143 MS.gene037655:intron 45.0%
!! TGCAGCTCTGGCTTTAATTG+GGG - chr4.3:79540289-79540308 MS.gene037655:CDS 45.0%
!! TGGCGGGTTGTCTTTGTTTA+TGG + chr4.3:79541691-79541710 None:intergenic 45.0%
!! TGTGCAGCTCTGGCTTTAAT+TGG - chr4.3:79540287-79540306 MS.gene037655:CDS 45.0%
!!! GGACACTGGGTCTTTGTTTT+TGG - chr4.3:79539635-79539654 MS.gene037655:intron 45.0%
!! TAAAAAAAAAAATGTTATAT+CGG - chr4.3:79541535-79541554 MS.gene037655:intron 5.0%
AAGACGGCTGTGTCTTGAGT+TGG + chr4.3:79542605-79542624 None:intergenic 50.0%
AGACATGCGTGAGAAGCTCT+TGG + chr4.3:79541278-79541297 None:intergenic 50.0%
ATGTCAAGGAAGCTGCAAGG+AGG + chr4.3:79542930-79542949 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr4.3:79539948-79539967 None:intergenic 50.0%
CACAATGCTACTCTGACGAG+TGG + chr4.3:79541307-79541326 None:intergenic 50.0%
CAGAGGCTCATGAGAGGTTA+AGG + chr4.3:79541643-79541662 None:intergenic 50.0%
GAAATCACTCCTCCCACTAC+CGG + chr4.3:79542140-79542159 None:intergenic 50.0%
GACATGCGTGAGAAGCTCTT+GGG + chr4.3:79541277-79541296 None:intergenic 50.0%
TCTCCACCACTGTTTGAACC+AGG + chr4.3:79541381-79541400 None:intergenic 50.0%
TTATCAGCGAGGGGTAACCT+TGG - chr4.3:79539928-79539947 MS.gene037655:CDS 50.0%
TTTAATTGGGGCTCCACGAG+TGG - chr4.3:79540301-79540320 MS.gene037655:CDS 50.0%
! GCACCGACCCTTATGATTGA+AGG - chr4.3:79539831-79539850 MS.gene037655:CDS 50.0%
! TTACACACGAGGCTGTTTCC+AGG + chr4.3:79540004-79540023 None:intergenic 50.0%
!! GATAAGCATTGGTGAGGCTG+AGG - chr4.3:79542373-79542392 MS.gene037655:CDS 50.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr4.3:79539983-79540002 MS.gene037655:CDS 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr4.3:79540079-79540098 None:intergenic 55.0%
AGTAAGACCTTGGGGTGTGC+AGG - chr4.3:79540189-79540208 MS.gene037655:CDS 55.0%
CATCAGGAATGTTGAGGGGC+TGG + chr4.3:79542022-79542041 None:intergenic 55.0%
CCAAAATGTGGTCACGGCTG+TGG - chr4.3:79540440-79540459 MS.gene037655:CDS 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr4.3:79540078-79540097 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr4.3:79540220-79540239 MS.gene037655:CDS 55.0%
GCTACTCTGACGAGTGGTAG+AGG + chr4.3:79541301-79541320 None:intergenic 55.0%
GGACCTGGTTCAAACAGTGG+TGG - chr4.3:79541375-79541394 MS.gene037655:intron 55.0%
TCTGAGGGTCAGGGGAATAG+TGG - chr4.3:79539576-79539595 MS.gene037655:intron 55.0%
! CCACAGCCGTGACCACATTT+TGG + chr4.3:79540443-79540462 None:intergenic 55.0%
! CGCTCCGTGTTACTCAATCC+TGG - chr4.3:79541969-79541988 MS.gene037655:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr4.3:79540222-79540241 None:intergenic 55.0%
! GCGTCGGTCGTTTCAGTCTA+GGG - chr4.3:79540617-79540636 MS.gene037655:intron 55.0%
! TGCGGCTGCAATTGCTGTTG+CGG - chr4.3:79540568-79540587 MS.gene037655:intron 55.0%
!! AGCGTCGGTCGTTTCAGTCT+AGG - chr4.3:79540616-79540635 MS.gene037655:intron 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG + chr4.3:79542017-79542036 None:intergenic 55.0%
!! GTAGAAGTACCGGTAGTGGG+AGG - chr4.3:79542128-79542147 MS.gene037655:intron 55.0%
!! TGGACTAGTCTGTGCAGCTC+TGG - chr4.3:79540277-79540296 MS.gene037655:CDS 55.0%
ACCTTGGGGTGTGCAGGCTT+GGG - chr4.3:79540195-79540214 MS.gene037655:CDS 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr4.3:79539937-79539956 MS.gene037655:CDS 60.0%
ATTGGGGCTCCACGAGTGGA+CGG - chr4.3:79540305-79540324 MS.gene037655:CDS 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4.3:79540066-79540085 None:intergenic 60.0%
CCAAACTGTGGTGCGACACC+AGG + chr4.3:79541990-79542009 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr4.3:79540066-79540085 MS.gene037655:CDS 60.0%
GAGGGTCAGGGGAATAGTGG+TGG - chr4.3:79539579-79539598 MS.gene037655:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr4.3:79540067-79540086 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr4.3:79540067-79540086 MS.gene037655:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr4.3:79540051-79540070 MS.gene037655:CDS 60.0%
! TGCGGGAGCTCTAGTGCACT+CGG - chr4.3:79540084-79540103 MS.gene037655:CDS 60.0%
!! CCTGGTGTCGCACCACAGTT+TGG - chr4.3:79541987-79542006 MS.gene037655:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + chr4.3:79540068-79540087 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr4.3:79540053-79540072 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr4.3:79540072-79540091 None:intergenic 65.0%
GACCTTGGGGTGTGCAGGCT+TGG - chr4.3:79540194-79540213 MS.gene037655:CDS 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr4.3:79540073-79540092 None:intergenic 65.0%
GGTGTGCAGGCTTGGGACCT+TGG - chr4.3:79540202-79540221 MS.gene037655:CDS 65.0%
TCCCAAGCCTGCACACCCCA+AGG + chr4.3:79540199-79540218 None:intergenic 65.0%
CCAACCCCACCGTCCACTCG+TGG + chr4.3:79540317-79540336 None:intergenic 70.0%
CCACGAGTGGACGGTGGGGT+TGG - chr4.3:79540314-79540333 MS.gene037655:CDS 70.0%
GGCTCCACGAGTGGACGGTG+GGG - chr4.3:79540310-79540329 MS.gene037655:CDS 70.0%
GGGCTCCACGAGTGGACGGT+GGG - chr4.3:79540309-79540328 MS.gene037655:CDS 70.0%
GGGGCTCCACGAGTGGACGG+TGG - chr4.3:79540308-79540327 MS.gene037655:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 79539096 79543026 79539096 ID=MS.gene037655
chr4.3 mRNA 79539096 79543026 79539096 ID=MS.gene037655.t1;Parent=MS.gene037655
chr4.3 exon 79542343 79543026 79542343 ID=MS.gene037655.t1.exon1;Parent=MS.gene037655.t1
chr4.3 CDS 79542343 79543026 79542343 ID=cds.MS.gene037655.t1;Parent=MS.gene037655.t1
chr4.3 exon 79539728 79540504 79539728 ID=MS.gene037655.t1.exon2;Parent=MS.gene037655.t1
chr4.3 CDS 79539728 79540504 79539728 ID=cds.MS.gene037655.t1;Parent=MS.gene037655.t1
chr4.3 exon 79539096 79539203 79539096 ID=MS.gene037655.t1.exon3;Parent=MS.gene037655.t1
chr4.3 CDS 79539096 79539203 79539096 ID=cds.MS.gene037655.t1;Parent=MS.gene037655.t1
Gene Sequence

>MS.gene037655

ATGGCTTCTGAAGAACCACAAGAAGAGGCAAAAACGATTCCACTGAAAATCTTAATAGACATAGAAAACAACAAAGTTGTCGCTGTAGAATCAACAAAGGACTTCATCGACACTCTCTTCAGCTTCCTTTCTCTTCCACTTGCTACTATCATTCGCCTTTTAACTAACCAGAACAATGATCAACAACAACAAGAACAACAATCATCAGAATCATCATCATTCCTCGGAAGCATCAAAAACCTCTATGAAAGCGTACAAAACCTCACTCCAAACGATGTTTGGAACCCTGTCTGCAAACAAATGTTGTTGAATCCAAAGAATCCATGTGAATCATTATGCAAGAAACTTTTCTTGAACATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATTCTTGTAACAAGTTTACGACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAACAGACAGCCTAAGAATTTGGATTCTGAGGGTCAGGGGAATAGTGGTGGTATTGCTGATGCTTTAAATGGGGTTTTTGTTAAGGACACTGGGTCTTTGTTTTTGGTGTATGATGATTTGAAGATTGTGCCAAGTTCTTTGGTGACTTCCATGCAGATGTTGATGGAATTGGGGTATTCTGATTTGAGTCAATTAGAGGAAGTCACACACAACATTGGAAAACAGGAGGTAATGGTGTTGTGTTTTGCAATGTGTATTTTTATGTTATGTTACTCTGTTGCACCGACCCTTATGATTGAAGGTGTGTCTAGGTGTCCGACACCGTCACTTATGCAACACTTATGATTGCATTGAATTATATCATTTTCTTCAAATTTTATCAGCGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTAGTCATGTGACTAAAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCGTGTGTAAAACAGGGTAAGGTTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTCTAGTGCACTCGGTTGCCCTTCAAATTTTATCAGCATCGATGTGTCAGTGTCATGTCCAGTGTCCGTGTCTGTTTCATAACATGTTAGTTTGTAGAGTAAGACCTTGGGGTGTGCAGGCTTGGGACCTTGGAGTGTGCTCCTCTCAAGGTCTCACATTTGAATCCTCCTTGTGCCAATTTTTGTGGACTAGTCTGTGCAGCTCTGGCTTTAATTGGGGCTCCACGAGTGGACGGTGGGGTTGGTCTCCCAAATTAGTAGGTCCTTGAACCGGATATCGAGTTTTTTAAAAAAATATTGTAGAGTAAGAAAAATTTGAAAGAATATTTGAAACTGTGAATCATTGTTCCAAAATGTGGTCACGGCTGTGGTTACGATGTGAACCTTAATATTGTAGTAAAGTGAGGGTAATTGTGTTCGGTGCAACTGCAATTGCAGTTGCGATGTCTTTGTAGAGACCTTTAAAACCTTTATATTGCGGCTGCAATTGCTGTTGCGGACTGCAATTTAGAACTATGTTGTGAAGCGTCGGTCGTTTCAGTCTAGGGTTATTTAGAACTCAAGTCTTAAGTGTTAGCATTTTAGTTTGGTGTTAGTTAGAATACACTTGTTAACTATGAGTATCAAAATGCTACTCAAACTGTAATGTCTGGATCAAATTAATTAATTGATAATGGTTTTGAGATCTTTTCTGAATTTTTCTTGTTTCGCGGACAAGTTAACAATGTCCTATAATTTGAGGTATTGAATTGGTGATTCACTCTTTTTACTTTTTGAACTTGCATTGGATGTTTAGACTGTTCTTGAATTATGAACCTTCACTTTATAACTTGATGTTTTTAGGGTAGTTTGTATTTAATTTGGAATAGCATCTGTTAAGAACCTGATAAGAGAGCATTCATTAAGGTCGTCTATGTGAGAAAGAATAGAAAGGAAAGTAAGGAGGGAAATAGAGCGGTTGTAATTGATATATCAGAACCTTGAAGGGTATAGGTTGGGTAAAAGAGAATTCAGACACACTATAAATCTTGAGTTAGAACTTAGAACTCCCAATATTAATTCCAATATTGCTCATCGTAACAAATTGGTAAGTATTTCTTTTGAATGTAACAACTAACAAGTTTTATTGTTGTTGCTGCTGTGTGATCAAGTAGAACATGCTGAAATGTGTTTGTCATTGTGCCCAAGAGCTTCTCACGCATGTCTCCTCTACCACTCGTCAGAGTAGCATTGTGTATCTCAACTAATTTGAGTTAAGAGTTAAAAGTGTTGAAATAGTTAAAGGACCTGGTTCAAACAGTGGTGGAGAAAAATACTAACATAACAATTAATCAATATACTAACATTTGCCTATCCAAAACACACACACACACTGTTATTGTTACCGTTTGGTTTACTATCTTGTATTTCTGTTATGTAATGTGAATTTGTTAGTGAAATATTTAAAAAAAAAAATGTTATATCGGGTTCATATGTATGTATGTTATCTTGGATAAAAATGTTTTCCCTGTCCTTTTGATGTACAGATGCTGAACCTCCTCAAGTACACCTTAACCTCTCATGAGCCTCTGACAAATGCAATTTTGAAAAGCAGCTCCATAAACAAAGACAACCCGCCAAATCAGTTTGCATCAGCAGTCAGAGTAAAAACTTGTACCCGCGACATTAAAATGGATGTTAAGCTAGTGCAAAGTAAATCTCAGAAAAAGATAATCTGTGCAGAAGCCAGTGAAAACTTTGTTGACTTCATGCTTAGCTTCCTTACAATACCATTAGGGTCCATTGTAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTCGATAATTTGTACAAGAGTGTAGAGAACTTGGACTCTTTGTGGTGTACGGACTCGCGCTCCGTGTTACTCAATCCTGGTGTCGCACCACAGTTTGGTTGTCCAAACCAGCCCCTCAACATTCCTGATGTACAAACACTCACCACTGCATATTATTATGGTACAGGAACTCCAAAGCAAGAAAGGGATTTACACTATCGTGGCCGTTATAATACAGTAGAAGTACCGGTAGTGGGAGGAGTGATTTCCAAGACAATGGGATCAATTTATAATGCAAAAGCCTTGACTGCAATGGATCCAAGATCTCCTAACAAATCGATTAAAGATGTGGTGGGATTTGTGAAAAGACCCGCATTATATGGTATAGGAGATGATTTAAAAGTAAAACCATTTTCTGCTAATTCTTGCCTTTCATCTTTGAAAGAATTAAGCCTTCCCTTTGTTGATCTTGAAGTGAAGGTGATAAGCATTGGTGAGGCTGAGGTAAAGTGACTACTATTACTAAACTTATAATTTTTTTTCCTTTTGTTTATTTGTTGTTCTAAGTTTTTAGCCTCTTTGATAGGTATGTGATACTGATACGCATCACATACCCTCCTAATACCTACCCATAAGTATCCAATACTTTTATTGATTATTTTTAAAAATATTTTCATTGATACTTCTCAAATACATCTTCAATACTTCTTACCAACTCAAGACACAGCCGTCTTCCAGATACACTACATTTTCGATATGCTTTACTAACTAAAGAGACATAATTGTGTTTTTGGGGGCACATTCTTCGTAGAAATATTATTGATATAGGTTGGGTGGGGTAATTATATATATGTAACTATGCTTACATGTTATGATTGCAAGTACTTTTTTTGTAAATTGCGATTACAAATAAACGTTTTCGAATGCTATATATATCTTGGTTTTGTCGTATCCTCGTATCTGTGTCATGTTGAATTCATATCATACTATGTATCCAGGATTCTTACCTCTTGATTTGCAATTTGCAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAATTTACACTGACTAGTGGACTGGAAGAATTTTTTAATGTGCCAAAACAAGATTCAAAGTTTAAGTGGGTCTGA
Protein sequence

>MS.gene037655.t1

MASEEPQEEAKTIPLKILIDIENNKVVAVESTKDFIDTLFSFLSLPLATIIRLLTNQNNDQQQQEQQSSESSSFLGSIKNLYESVQNLTPNDVWNPVCKQMLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDSCNKFTTFQNLDCTCGKPTNRQPKNLDSEGQGNSGGIADALNGVFVKDTGSLFLVYDDLKIVPSSLVTSMQMLMELGYSDLSQLEEVTHNIGKQEMLNLLKYTLTSHEPLTNAILKSSSINKDNPPNQFASAVRVKTCTRDIKMDVKLVQSKSQKKIICAEASENFVDFMLSFLTIPLGSIVKVLDGNSFVGCVDNLYKSVENLDSLWCTDSRSVLLNPGVAPQFGCPNQPLNIPDVQTLTTAYYYGTGTPKQERDLHYRGRYNTVEVPVVGGVISKTMGSIYNAKALTAMDPRSPNKSIKDVVGFVKRPALYGIGDDLKVKPFSANSCLSSLKELSLPFVDLEVKVISIGEAEALSLLAASLTSKFTLTSGLEEFFNVPKQDSKFKWV