AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96845.t1 MTR_7g062300 81.568 472 84 3 1 469 1 472 0.0 766
MS.gene96845.t1 MTR_7g062280 78.980 490 86 2 5 477 3 492 0.0 766
MS.gene96845.t1 MTR_7g063920 66.876 477 118 4 1 477 1 437 0.0 598
MS.gene96845.t1 MTR_7g063880 57.202 486 180 9 1 476 1 468 5.45e-175 499
MS.gene96845.t1 MTR_7g063900 54.910 499 193 9 1 477 1 489 4.96e-169 485
MS.gene96845.t1 MTR_7g063840 55.462 476 200 7 8 477 5 474 9.19e-168 481
MS.gene96845.t1 MTR_7g063660 54.792 480 203 5 7 477 4 478 1.21e-163 471
MS.gene96845.t1 MTR_7g063830 55.072 483 171 10 1 476 1 444 2.67e-160 461
MS.gene96845.t1 MTR_7g063820 55.221 498 189 11 1 477 1 485 3.31e-160 462
MS.gene96845.t1 MTR_3g007740 53.700 473 176 10 8 471 5 443 2.94e-152 441
MS.gene96845.t1 MTR_7g063890 53.689 488 201 11 8 476 23 504 2.17e-145 426
MS.gene96845.t1 MTR_7g063670 51.042 480 189 8 10 477 13 458 4.18e-143 418
MS.gene96845.t1 MTR_7g066570 41.400 500 243 11 4 474 6 484 9.99e-114 347
MS.gene96845.t1 MTR_7g066410 38.976 508 264 7 10 472 8 514 6.64e-107 327
MS.gene96845.t1 MTR_7g066410 25.316 237 156 8 6 229 278 506 8.24e-12 67.8
MS.gene96845.t1 MTR_7g066410 41.026 78 41 1 250 322 5 82 9.36e-11 64.3
MS.gene96845.t1 MTR_3g065200 44.298 456 194 11 12 457 3 408 3.01e-106 324
MS.gene96845.t1 MTR_7g066430 41.372 481 259 5 13 470 5 485 2.11e-105 323
MS.gene96845.t1 MTR_7g066260 41.068 487 245 12 1 470 1 462 1.41e-102 315
MS.gene96845.t1 MTR_7g058710 37.525 509 261 16 1 477 1 484 8.39e-96 298
MS.gene96845.t1 MTR_7g012680 39.516 496 237 13 1 477 1 452 2.47e-95 295
MS.gene96845.t1 MTR_7g066360 41.996 481 224 13 2 466 4 445 1.92e-93 291
MS.gene96845.t1 MTR_7g066290 38.969 485 229 10 1 470 1 433 4.33e-92 286
MS.gene96845.t1 MTR_7g066580 38.689 473 236 10 24 473 7 448 1.03e-90 283
MS.gene96845.t1 MTR_7g066580 29.487 234 144 9 11 230 214 440 1.41e-13 73.2
MS.gene96845.t1 MTR_7g066340 37.917 480 261 11 1 470 1 453 3.92e-90 283
MS.gene96845.t1 MTR_7g062270 70.053 187 54 1 1 187 1 185 1.69e-88 276
MS.gene96845.t1 MTR_7g066490 39.186 467 201 12 12 470 16 407 4.61e-84 265
MS.gene96845.t1 MTR_7g066350 37.657 478 254 11 8 472 5 451 1.10e-83 266
MS.gene96845.t1 MTR_7g066480 45.399 326 158 5 12 325 16 333 8.62e-82 260
MS.gene96845.t1 MTR_7g066480 47.368 76 40 0 396 471 347 422 3.74e-15 77.8
MS.gene96845.t1 MTR_7g066480 28.017 232 128 7 255 464 16 230 2.19e-11 66.2
MS.gene96845.t1 MTR_7g063720 52.869 244 102 2 235 477 2 233 2.05e-81 252
MS.gene96845.t1 MTR_7g063720 30.734 218 127 8 14 229 25 220 3.77e-18 84.0
MS.gene96845.t1 MTR_7g066400 34.356 489 254 11 1 472 1 439 1.41e-79 254
MS.gene96845.t1 MTR_1g041315 34.105 475 262 9 3 454 5 451 7.77e-78 251
MS.gene96845.t1 MTR_4g019310 34.653 505 288 13 6 477 2 497 3.02e-75 245
MS.gene96845.t1 MTR_7g058700 35.924 476 205 12 24 477 531 928 6.59e-74 250
MS.gene96845.t1 MTR_7g066310 33.623 461 222 10 11 470 6 383 7.30e-71 231
MS.gene96845.t1 MTR_7g066310 25.778 225 128 6 8 229 189 377 1.75e-12 69.3
MS.gene96845.t1 MTR_2g029400 33.263 472 232 10 2 460 4 405 2.52e-66 219
MS.gene96845.t1 MTR_7g063850 46.535 303 139 10 182 476 1 288 2.27e-65 213
MS.gene96845.t1 MTR_4g017830 31.879 527 288 16 1 476 1 507 1.99e-60 207
MS.gene96845.t1 MTR_7g063690 39.860 286 104 4 1 282 1 222 1.40e-52 177
MS.gene96845.t1 MTR_4g017410 30.769 507 296 14 6 476 3 490 1.04e-50 180
MS.gene96845.t1 MTR_4g019340 32.165 485 274 17 10 458 36 501 5.01e-50 178
MS.gene96845.t1 MTR_4g017440 30.518 521 280 21 6 470 8 502 2.09e-49 176
MS.gene96845.t1 MTR_4g017610 30.986 497 286 18 4 466 2 475 1.30e-48 174
MS.gene96845.t1 MTR_7g066280 30.340 412 233 11 91 470 1 390 2.47e-48 171
MS.gene96845.t1 MTR_4g017470 28.516 519 285 13 1 476 1 476 2.52e-47 171
MS.gene96845.t1 MTR_7g100420 38.486 317 179 4 156 466 87 393 1.82e-46 166
MS.gene96845.t1 MTR_7g100420 71.739 46 13 0 10 55 37 82 1.63e-12 69.3
MS.gene96845.t1 MTR_1g014060 45.411 207 95 7 25 222 13 210 1.43e-43 158
MS.gene96845.t1 MTR_1g014060 37.824 193 109 2 285 477 210 391 1.07e-30 123
MS.gene96845.t1 MTR_1g014060 27.778 216 137 7 268 470 13 222 9.28e-13 70.1
MS.gene96845.t1 MTR_7g066680 37.459 307 131 9 212 466 37 334 7.93e-43 155
MS.gene96845.t1 MTR_7g066680 27.602 221 135 10 5 214 80 286 2.46e-12 68.6
MS.gene96845.t1 MTR_8g023240 26.695 472 300 14 13 464 38 483 7.43e-35 137
MS.gene96845.t1 MTR_4g017550 29.211 469 268 19 42 466 21 469 1.79e-33 132
MS.gene96845.t1 MTR_4g017550 28.936 235 132 8 13 228 248 466 1.74e-12 69.7
MS.gene96845.t1 MTR_8g445860 32.661 248 135 8 3 235 8 238 3.13e-25 104
MS.gene96845.t1 MTR_1g115440 32.143 252 139 8 1 234 1 238 1.98e-23 99.4
MS.gene96845.t1 MTR_0150s0010 31.967 244 143 7 5 234 3 237 2.77e-22 95.9
MS.gene96845.t1 MTR_7g063760 56.757 74 31 1 405 477 1 74 4.65e-22 90.1
MS.gene96845.t1 MTR_1g115455 28.745 247 150 8 1 235 1 233 4.24e-16 78.2
MS.gene96845.t1 MTR_7g066390 51.389 72 35 0 399 470 51 122 1.45e-15 74.3
MS.gene96845.t1 MTR_2g067310 34.857 175 72 6 23 195 56 190 2.13e-15 76.3
MS.gene96845.t1 MTR_7g063870 55.357 56 25 0 6 61 25 80 1.98e-13 70.5
MS.gene96845.t1 MTR_7g063870 54.237 59 27 0 161 219 99 157 2.25e-12 67.4
MS.gene96845.t1 MTR_1g115470 38.095 105 57 3 14 116 8 106 7.67e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96845.t1 AT5G01150 30.859 512 277 12 10 476 7 486 2.60e-63 214
MS.gene96845.t1 AT3G09140 32.558 516 283 16 1 472 1 495 1.35e-61 209
MS.gene96845.t1 AT5G01120 32.172 488 291 10 13 469 10 488 1.30e-59 204
MS.gene96845.t1 AT3G09140 30.882 544 283 17 1 472 1 523 8.19e-57 197
MS.gene96845.t1 AT3G09110 35.294 340 189 8 14 338 11 334 2.36e-54 186
MS.gene96845.t1 AT5G01130 31.687 486 273 13 10 477 7 451 2.90e-54 188
MS.gene96845.t1 AT5G01140 29.939 491 294 12 3 477 2 458 6.98e-54 188
MS.gene96845.t1 AT5G43240 31.174 494 286 10 13 466 10 489 2.05e-53 187
MS.gene96845.t1 AT5G43240 31.174 494 286 10 13 466 10 489 2.05e-53 187
MS.gene96845.t1 AT5G43240 31.174 494 286 10 13 466 10 489 2.05e-53 187
MS.gene96845.t1 AT3G09120 35.849 318 176 7 11 309 5 313 5.74e-49 171
MS.gene96845.t1 AT5G37320 28.627 510 276 16 13 472 10 481 5.10e-41 153
MS.gene96845.t1 AT5G43240 27.607 326 199 7 167 466 31 345 2.19e-18 87.0

Find 88 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTCTGTTCAAGGAATT+TGG 0.172599 7.3:-42829481 MS.gene96845:CDS
GGAGGAATCACGCGGATATT+TGG 0.249262 7.3:-42829066 MS.gene96845:CDS
CTTGACTCCAATTTCAGCTT+TGG 0.260143 7.3:-42828689 MS.gene96845:CDS
ACTTTGACAGATTTGTTTCT+AGG 0.272847 7.3:-42829261 MS.gene96845:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.3:+42828682 None:intergenic
TTCACATGTTACAACTTTAG+TGG 0.335742 7.3:-42829685 MS.gene96845:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.338051 7.3:-42828688 MS.gene96845:CDS
CTTGTATAATCCATACAGTT+TGG 0.348042 7.3:+42829505 None:intergenic
TTATCTACTTCGGTGATTCC+TGG 0.356937 7.3:-42828772 MS.gene96845:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.3:+42829999 None:intergenic
AACTCCTCTTGATGATTTGA+AGG 0.368516 7.3:-42828647 MS.gene96845:CDS
TGAACACCAGGTTCAAGAAT+TGG 0.375903 7.3:+42828895 None:intergenic
TACAAGCTTTAGTCTGTTCA+AGG 0.384290 7.3:-42829488 MS.gene96845:CDS
ATCTGCCTTAACAAATGGTT+TGG 0.386717 7.3:-42828426 MS.gene96845:CDS
ATACGTTGAAGTGATCATAT+CGG 0.389229 7.3:+42829651 None:intergenic
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.3:-42829902 MS.gene96845:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.3:-42829919 MS.gene96845:CDS
GGGAGAGATTTAAGGAAAAC+TGG 0.412605 7.3:+42829586 None:intergenic
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.3:-42829967 MS.gene96845:CDS
CACTATCAAGCCAAACTGTA+TGG 0.415222 7.3:-42829515 MS.gene96845:CDS
TCAACATCTGCCTTAACAAA+TGG 0.422887 7.3:-42828431 MS.gene96845:CDS
GGCTTGCTTAACTTCAACTG+TGG 0.428293 7.3:+42828925 None:intergenic
TACACCATTAACAAATCCTT+GGG 0.434973 7.3:+42829564 None:intergenic
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.3:+42829757 None:intergenic
TCTGAATGTCACTGAAGAAA+AGG 0.441886 7.3:-42829425 MS.gene96845:intron
TACGTTGAAGTGATCATATC+GGG 0.447622 7.3:+42829652 None:intergenic
GTGAGCCAAACCATTTGTTA+AGG 0.458136 7.3:+42828421 None:intergenic
TCACATGTTAACCGAAGTTA+AGG 0.465854 7.3:-42828402 MS.gene96845:CDS
CTACACCATTAACAAATCCT+TGG 0.482540 7.3:+42829563 None:intergenic
AACCATCCCTTGAGAGTACA+AGG 0.483265 7.3:-42829233 MS.gene96845:CDS
TAAATATTTGATATCAAAAG+AGG 0.486512 7.3:-42828980 MS.gene96845:CDS
CTTTGACAGATTTGTTTCTA+GGG 0.498625 7.3:-42829260 MS.gene96845:CDS
TAACATGTGAAGTACTTTGT+TGG 0.498999 7.3:+42829697 None:intergenic
TGTGGTTATTCTGAAAGTAA+TGG 0.504934 7.3:-42828865 MS.gene96845:CDS
TCCTGGTGAGAGTTATGTAA+AGG 0.507437 7.3:-42828755 MS.gene96845:CDS
CCTGGTGAGAGTTATGTAAA+GGG 0.511420 7.3:-42828754 MS.gene96845:CDS
GCTTGCTTAACTTCAACTGT+GGG 0.518028 7.3:+42828926 None:intergenic
TAACCAGCTTCAGAATGACT+TGG 0.519152 7.3:+42829175 None:intergenic
GCTGTTGATATGAGTTATGC+TGG 0.520204 7.3:-42828814 MS.gene96845:CDS
AGTTGTCACTATTGGCATCA+AGG 0.520473 7.3:-42828620 MS.gene96845:CDS
TATCCAAGTCATTCTGAAGC+TGG 0.521534 7.3:-42829178 MS.gene96845:CDS
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.3:-42829138 MS.gene96845:CDS
GTGTGATGGTGAAATTGTTA+AGG 0.521742 7.3:-42829202 MS.gene96845:CDS
GGTTCAAGAATTGGTAATAC+CGG 0.523045 7.3:+42828904 None:intergenic
TCATTTCTCCTCCTTAACTT+CGG 0.524075 7.3:+42828391 None:intergenic
GGAATCACGCGGATATTTGG+AGG 0.528431 7.3:-42829063 MS.gene96845:CDS
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.3:-42829136 MS.gene96845:CDS
TTCAACTGTGGGGCAATGCA+AGG 0.536631 7.3:+42828937 None:intergenic
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.3:-42829962 MS.gene96845:CDS
CAAAGCTGAAATTGGAGTCA+AGG 0.541710 7.3:+42828690 None:intergenic
TCTGTAGCAAAATACAATGC+TGG 0.544046 7.3:+42828730 None:intergenic
GTATTACCAATTCTTGAACC+TGG 0.545232 7.3:-42828901 MS.gene96845:CDS
AAGTGATCATATCGGGATAG+AGG 0.549823 7.3:+42829659 None:intergenic
TTTCTTACATTTCCTTTGGG+AGG 0.556193 7.3:-42829084 MS.gene96845:CDS
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.3:-42829449 MS.gene96845:CDS
CCCTTTACATAACTCTCACC+AGG 0.559913 7.3:+42828754 None:intergenic
AACCTTGTACTCTCAAGGGA+TGG 0.560718 7.3:+42829231 None:intergenic
CCACAATATTCATGAACACC+AGG 0.566428 7.3:+42828883 None:intergenic
GCATAACTCATATCAACAGC+AGG 0.568185 7.3:+42828817 None:intergenic
AAAGCTGAAATTGGAGTCAA+GGG 0.571174 7.3:+42828691 None:intergenic
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.3:-42829966 MS.gene96845:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.576241 7.3:-42829865 MS.gene96845:CDS
TGTTCCGTGGGAAGCTTCAG+CGG 0.576352 7.3:-42829036 MS.gene96845:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.3:-42829893 MS.gene96845:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.3:+42829904 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.3:-42829879 MS.gene96845:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.3:-42829137 MS.gene96845:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.3:-42829880 MS.gene96845:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7.3:-42829803 MS.gene96845:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.3:+42829894 None:intergenic
ATTTGGAGGGAATTGTTCCG+TGG 0.604739 7.3:-42829049 MS.gene96845:CDS
ACAGTTGAAGTTAAGCAAGC+CGG 0.608630 7.3:-42828923 MS.gene96845:CDS
TACTACTTCTACTGAAGCAG+AGG 0.610411 7.3:-42830031 MS.gene96845:CDS
CATGTTAACCGAAGTTAAGG+AGG 0.619389 7.3:-42828399 MS.gene96845:CDS
CCTGGTGTTCATGAATATTG+TGG 0.625196 7.3:-42828883 MS.gene96845:CDS
TATAAGAAAATCAGATAACA+AGG 0.631180 7.3:-42829154 MS.gene96845:CDS
ATCCGCGTGATTCCTCCCAA+AGG 0.648170 7.3:+42829072 None:intergenic
GAATCACGCGGATATTTGGA+GGG 0.659768 7.3:-42829062 MS.gene96845:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.3:-42829836 MS.gene96845:CDS
TTTGGAGGGAATTGTTCCGT+GGG 0.669991 7.3:-42829048 MS.gene96845:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.3:-42829820 MS.gene96845:CDS
CACCATTAACAAATCCTTGG+GGG 0.679874 7.3:+42829566 None:intergenic
CAATCCGCTGAAGCTTCCCA+CGG 0.680481 7.3:+42829032 None:intergenic
TTCCTTTGGGAGGAATCACG+CGG 0.684808 7.3:-42829074 MS.gene96845:CDS
ACACCATTAACAAATCCTTG+GGG 0.695095 7.3:+42829565 None:intergenic
CTTGCTTAACTTCAACTGTG+GGG 0.699007 7.3:+42828927 None:intergenic
TGTCACTATTGGCATCAAGG+AGG 0.742676 7.3:-42828617 MS.gene96845:intron
TCTACAACCAATCAACTCAG+CGG 0.762164 7.3:-42829764 MS.gene96845:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATTTATCTACTT+CGG - chr7.3:42829648-42829667 MS.gene96845:CDS 10.0%
!! TAAATATTTGATATCAAAAG+AGG - chr7.3:42829450-42829469 MS.gene96845:CDS 15.0%
!! TACCTATATAAAACAATAAT+AGG + chr7.3:42829113-42829132 None:intergenic 15.0%
!! TCAATAAAAAAATTTAAGAG+AGG + chr7.3:42829076-42829095 None:intergenic 15.0%
!!! GTCTAATATAAATTTTACTA+TGG + chr7.3:42829843-42829862 None:intergenic 15.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.3:42829276-42829295 MS.gene96845:CDS 20.0%
!! TATTTAAATGTTCTTTGCTT+GGG - chr7.3:42829877-42829896 MS.gene96845:CDS 20.0%
!! TTATTTAAATGTTCTTTGCT+TGG - chr7.3:42829876-42829895 MS.gene96845:CDS 20.0%
!!! CTCCTATTATTGTTTTATAT+AGG - chr7.3:42829108-42829127 MS.gene96845:CDS 20.0%
! ATTTAAATGTTCTTTGCTTG+GGG - chr7.3:42829878-42829897 MS.gene96845:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.3:42829342-42829361 MS.gene96845:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.3:42829343-42829362 MS.gene96845:intron 25.0%
AACACTACAACAAGACAATA+AGG + chr7.3:42829953-42829972 None:intergenic 30.0%
AAGGAAAAAGTTGTCACTAT+TGG - chr7.3:42829802-42829821 MS.gene96845:CDS 30.0%
ATACGTTGAAGTGATCATAT+CGG + chr7.3:42828782-42828801 None:intergenic 30.0%
CTTGTATAATCCATACAGTT+TGG + chr7.3:42828928-42828947 None:intergenic 30.0%
TACACCATTAACAAATCCTT+GGG + chr7.3:42828869-42828888 None:intergenic 30.0%
TATCAAAAGAGGCTAAAAAC+AGG - chr7.3:42829461-42829480 MS.gene96845:CDS 30.0%
TTCACATGTTACAACTTTAG+TGG - chr7.3:42828745-42828764 MS.gene96845:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.3:42828434-42828453 None:intergenic 30.0%
TTTAAATGTTCTTTGCTTGG+GGG - chr7.3:42829879-42829898 MS.gene96845:CDS 30.0%
TTTAGTCTGTTCAAGGAATT+TGG - chr7.3:42828949-42828968 MS.gene96845:CDS 30.0%
! AAACTTCTTTTGAACGAAGA+TGG - chr7.3:42828436-42828455 MS.gene96845:CDS 30.0%
! ACTTTGACAGATTTGTTTCT+AGG - chr7.3:42829169-42829188 MS.gene96845:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.3:42829708-42829727 MS.gene96845:CDS 30.0%
! TAACATGTGAAGTACTTTGT+TGG + chr7.3:42828736-42828755 None:intergenic 30.0%
! TGTGGTTATTCTGAAAGTAA+TGG - chr7.3:42829565-42829584 MS.gene96845:CDS 30.0%
! TTTTCCTTCAAATCATCAAG+AGG + chr7.3:42829790-42829809 None:intergenic 30.0%
!! CTTTGACAGATTTGTTTCTA+GGG - chr7.3:42829170-42829189 MS.gene96845:CDS 30.0%
!!! GTAGTGTTTTAGCATTTTGA+AGG - chr7.3:42829965-42829984 MS.gene96845:CDS 30.0%
AAACTCACTCTATAGAAGTG+TGG - chr7.3:42828594-42828613 MS.gene96845:intron 35.0%
AAAGCTGAAATTGGAGTCAA+GGG + chr7.3:42829742-42829761 None:intergenic 35.0%
ACACCATTAACAAATCCTTG+GGG + chr7.3:42828868-42828887 None:intergenic 35.0%
AGAAAAACCTTGTACTCTCA+AGG + chr7.3:42829207-42829226 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.3:42828511-42828530 MS.gene96845:intron 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.3:42829751-42829770 None:intergenic 35.0%
ATCTGCCTTAACAAATGGTT+TGG - chr7.3:42830004-42830023 MS.gene96845:CDS 35.0%
CTACACCATTAACAAATCCT+TGG + chr7.3:42828870-42828889 None:intergenic 35.0%
GAAAAACCTTGTACTCTCAA+GGG + chr7.3:42829206-42829225 None:intergenic 35.0%
GTATTACCAATTCTTGAACC+TGG - chr7.3:42829529-42829548 MS.gene96845:CDS 35.0%
TACGTTGAAGTGATCATATC+GGG + chr7.3:42828781-42828800 None:intergenic 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.3:42828551-42828570 MS.gene96845:intron 35.0%
TCAACATCTGCCTTAACAAA+TGG - chr7.3:42829999-42830018 MS.gene96845:CDS 35.0%
TCACATGTTAACCGAAGTTA+AGG - chr7.3:42830028-42830047 MS.gene96845:CDS 35.0%
TCATTTCTCCTCCTTAACTT+CGG + chr7.3:42830042-42830061 None:intergenic 35.0%
TCTGAATGTCACTGAAGAAA+AGG - chr7.3:42829005-42829024 MS.gene96845:CDS 35.0%
TCTGTAGCAAAATACAATGC+TGG + chr7.3:42829703-42829722 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.3:42828969-42828988 MS.gene96845:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.3:42829742-42829761 MS.gene96845:CDS 35.0%
TTTCTTACATTTCCTTTGGG+AGG - chr7.3:42829346-42829365 MS.gene96845:intron 35.0%
! AACTCCTCTTGATGATTTGA+AGG - chr7.3:42829783-42829802 MS.gene96845:CDS 35.0%
! GGTTCAAGAATTGGTAATAC+CGG + chr7.3:42829529-42829548 None:intergenic 35.0%
! GTGTGATGGTGAAATTGTTA+AGG - chr7.3:42829228-42829247 MS.gene96845:CDS 35.0%
! TACAAGCTTTAGTCTGTTCA+AGG - chr7.3:42828942-42828961 MS.gene96845:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.3:42829292-42829311 MS.gene96845:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.3:42829293-42829312 MS.gene96845:CDS 35.0%
AAGTGATCATATCGGGATAG+AGG + chr7.3:42828774-42828793 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.3:42828529-42828548 None:intergenic 40.0%
ACAGTTGAAGTTAAGCAAGC+CGG - chr7.3:42829507-42829526 MS.gene96845:CDS 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7.3:42829810-42829829 MS.gene96845:CDS 40.0%
CAAAGCTGAAATTGGAGTCA+AGG + chr7.3:42829743-42829762 None:intergenic 40.0%
CACCATTAACAAATCCTTGG+GGG + chr7.3:42828867-42828886 None:intergenic 40.0%
CACTATCAAGCCAAACTGTA+TGG - chr7.3:42828915-42828934 MS.gene96845:CDS 40.0%
CATGTTAACCGAAGTTAAGG+AGG - chr7.3:42830031-42830050 MS.gene96845:CDS 40.0%
CCACAATATTCATGAACACC+AGG + chr7.3:42829550-42829569 None:intergenic 40.0%
CCTGGTGAGAGTTATGTAAA+GGG - chr7.3:42829676-42829695 MS.gene96845:CDS 40.0%
CCTGGTGTTCATGAATATTG+TGG - chr7.3:42829547-42829566 MS.gene96845:CDS 40.0%
CTTGACTCCAATTTCAGCTT+TGG - chr7.3:42829741-42829760 MS.gene96845:CDS 40.0%
CTTGCTTAACTTCAACTGTG+GGG + chr7.3:42829506-42829525 None:intergenic 40.0%
GCATAACTCATATCAACAGC+AGG + chr7.3:42829616-42829635 None:intergenic 40.0%
GCTGTTGATATGAGTTATGC+TGG - chr7.3:42829616-42829635 MS.gene96845:CDS 40.0%
GCTTGCTTAACTTCAACTGT+GGG + chr7.3:42829507-42829526 None:intergenic 40.0%
GGGAGAGATTTAAGGAAAAC+TGG + chr7.3:42828847-42828866 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.3:42828550-42828569 MS.gene96845:intron 40.0%
TAACCAGCTTCAGAATGACT+TGG + chr7.3:42829258-42829277 None:intergenic 40.0%
TACTACTTCTACTGAAGCAG+AGG - chr7.3:42828399-42828418 MS.gene96845:CDS 40.0%
TCAAGCTAACGCACCAAAAT+TGG + chr7.3:42829908-42829927 None:intergenic 40.0%
TCCTGGTGAGAGTTATGTAA+AGG - chr7.3:42829675-42829694 MS.gene96845:CDS 40.0%
TCTACAACCAATCAACTCAG+CGG - chr7.3:42828666-42828685 MS.gene96845:CDS 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7.3:42829538-42829557 None:intergenic 40.0%
TTATCTACTTCGGTGATTCC+TGG - chr7.3:42829658-42829677 MS.gene96845:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.3:42828528-42828547 MS.gene96845:intron 40.0%
! ACAAGGTTTTTCTCGTGTGA+TGG - chr7.3:42829214-42829233 MS.gene96845:CDS 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7.3:42828985-42829004 None:intergenic 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7.3:42828984-42829003 None:intergenic 40.0%
! GTGAGCCAAACCATTTGTTA+AGG + chr7.3:42830012-42830031 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.3:42828463-42828482 MS.gene96845:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.3:42828464-42828483 MS.gene96845:CDS 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7.3:42829294-42829313 MS.gene96845:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.3:42828676-42828695 None:intergenic 40.0%
!! TATCCAAGTCATTCTGAAGC+TGG - chr7.3:42829252-42829271 MS.gene96845:CDS 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7.3:42828627-42828646 MS.gene96845:CDS 40.0%
AACCTTGTACTCTCAAGGGA+TGG + chr7.3:42829202-42829221 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.3:42828565-42828584 MS.gene96845:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.3:42828610-42828629 MS.gene96845:intron 45.0%
ATCCTTGGGGGAGAGATTTA+AGG + chr7.3:42828855-42828874 None:intergenic 45.0%
ATTTGGAGGGAATTGTTCCG+TGG - chr7.3:42829381-42829400 MS.gene96845:intron 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.3:42828537-42828556 MS.gene96845:intron 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7.3:42828981-42829000 MS.gene96845:CDS 45.0%
CCCTTTACATAACTCTCACC+AGG + chr7.3:42829679-42829698 None:intergenic 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.3:42828539-42828558 None:intergenic 45.0%
GAATCACGCGGATATTTGGA+GGG - chr7.3:42829368-42829387 MS.gene96845:intron 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7.3:42829813-42829832 MS.gene96845:CDS 45.0%
TTCCTTAAATCTCTCCCCCA+AGG - chr7.3:42828850-42828869 MS.gene96845:CDS 45.0%
TTTGGAGGGAATTGTTCCGT+GGG - chr7.3:42829382-42829401 MS.gene96845:intron 45.0%
! AACCATCCCTTGAGAGTACA+AGG - chr7.3:42829197-42829216 MS.gene96845:CDS 45.0%
! GGCTTGCTTAACTTCAACTG+TGG + chr7.3:42829508-42829527 None:intergenic 45.0%
!! CTCCCCCAAGGATTTGTTAA+TGG - chr7.3:42828862-42828881 MS.gene96845:CDS 45.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.3:42828468-42828487 MS.gene96845:intron 50.0%
GGAATCACGCGGATATTTGG+AGG - chr7.3:42829367-42829386 MS.gene96845:intron 50.0%
GGAGGAATCACGCGGATATT+TGG - chr7.3:42829364-42829383 MS.gene96845:intron 50.0%
TTCAACTGTGGGGCAATGCA+AGG + chr7.3:42829496-42829515 None:intergenic 50.0%
! TGCTTGGGGGTTGCCAATTT+TGG - chr7.3:42829892-42829911 MS.gene96845:CDS 50.0%
! TTCCTTTGGGAGGAATCACG+CGG - chr7.3:42829356-42829375 MS.gene96845:intron 50.0%
ATCCGCGTGATTCCTCCCAA+AGG + chr7.3:42829361-42829380 None:intergenic 55.0%
CAATCCGCTGAAGCTTCCCA+CGG + chr7.3:42829401-42829420 None:intergenic 55.0%
TGTTCCGTGGGAAGCTTCAG+CGG - chr7.3:42829394-42829413 MS.gene96845:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42828391 42830061 42828391 ID=MS.gene96845
chr7.3 mRNA 42828391 42830061 42828391 ID=MS.gene96845.t1;Parent=MS.gene96845
chr7.3 exon 42829426 42830061 42829426 ID=MS.gene96845.t1.exon1;Parent=MS.gene96845.t1
chr7.3 CDS 42829426 42830061 42829426 ID=cds.MS.gene96845.t1;Parent=MS.gene96845.t1
chr7.3 exon 42828618 42829322 42828618 ID=MS.gene96845.t1.exon2;Parent=MS.gene96845.t1
chr7.3 CDS 42828618 42829322 42828618 ID=cds.MS.gene96845.t1;Parent=MS.gene96845.t1
chr7.3 exon 42828391 42828483 42828391 ID=MS.gene96845.t1.exon3;Parent=MS.gene96845.t1
chr7.3 CDS 42828391 42828483 42828391 ID=cds.MS.gene96845.t1;Parent=MS.gene96845.t1
Gene Sequence

>MS.gene96845

ATGGCTGCTACTACTTCTACTGAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAGATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTTGACATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGCTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGATGACAATCAACCAACAAAGTACTTCACATGTTACAACTTTAGTGGTTGCCTCTATCCCGATATGATCACTTCAACGTATAAAGATAAATATAAATGTCGATGTGCTCGTTCTTTTACAGTTCCAGTTTTCCTTAAATCTCTCCCCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATGGATTATACAAGCTTTAGTCTGTTCAAGGAATTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACTGAAGAAAAGGTTTTGTATTTGAATATCACTACTGTTTATAAATTCTATTCAAACACCTCTCTTAAATTTTTTTATTGATTATAACAACTACTCCTATTATTGTTTTATATAGGTACTTGATCTGCTAAAGTGTTCTTTGCTTTCAAAGTCAACTTTGACAGATTTGTTTCTAGGGAAGAAACCATCCCTTGAGAGTACAAGGTTTTTCTCGTGTGATGGTGAAATTGTTAAGGATATCCAAGTCATTCTGAAGCTGGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGAGGAATCACGCGGATATTTGGAGGGAATTGTTCCGTGGGAAGCTTCAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAAAAGAGGCTAAAAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTGAAGTTAAGCAAGCCGGTATTACCAATTCTTGAACCTGGTGTTCATGAATATTGTGGTTATTCTGAAAGTAATGGTATTGTTCGTGTTCAAATTTTCAATCCTGCTGTTGATATGAGTTATGCTGGAAATTTTATAAAAATTAATTTATCTACTTCGGTGATTCCTGGTGAGAGTTATGTAAAGGGTCCAGCATTGTATTTTGCTACAGATGATTTGGTTGTAGCACCCTTGACTCCAATTTCAGCTTTGGGTTTACTTAACAGTTTGAAAACTCCTCTTGATGATTTGAAGGAAAAAGTTGTCACTATTGGCATCAAGGAGGTAAACCATAGTAAAATTTATATTAGACTTTAATCTTCAGTTTATTTAAATGTTCTTTGCTTGGGGGTTGCCAATTTTGGTGCGTTAGCTTGAAAATAAAATATGCTTATGTTTACCTTATTGTCTTGTTGTAGTGTTTTAGCATTTTGAAGGCTTCTTTGACATCAACATCTGCCTTAACAAATGGTTTGGCTCACATGTTAACCGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene96845.t1

MAATTSTEAEEHVSLKLLLNEDGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCNTLKLNIDDNQPTKYFTCYNFSGCLYPDMITSTYKDKYKCRCARSFTVPVFLKSLPQGFVNGVATFVITDDLTIKPNCMDYTSFSLFKEFGIKNPSSVKEVVLNVTEEKVLDLLKCSLLSKSTLTDLFLGKKPSLESTRFFSCDGEIVKDIQVILKLVIRKSDNKVLYAQGEQDFANLLLSFLTFPLGGITRIFGGNCSVGSFSGLYKSIVELNENKYLISKEAKNRLVDPCIAPQLKLSKPVLPILEPGVHEYCGYSESNGIVRVQIFNPAVDMSYAGNFIKINLSTSVIPGESYVKGPALYFATDDLVVAPLTPISALGLLNSLKTPLDDLKEKVVTIGIKECFSILKASLTSTSALTNGLAHMLTEVKEEK