AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99611.t1 MTR_7g062280 81.466 491 77 2 5 482 3 492 0.0 796
MS.gene99611.t1 MTR_7g062300 83.019 477 73 4 1 474 1 472 0.0 781
MS.gene99611.t1 MTR_7g063920 67.635 482 111 5 1 482 1 437 0.0 608
MS.gene99611.t1 MTR_7g063880 56.996 486 186 8 1 481 1 468 1.47e-171 491
MS.gene99611.t1 MTR_7g063660 55.602 482 201 7 7 482 4 478 7.95e-170 487
MS.gene99611.t1 MTR_7g063900 55.332 497 199 10 1 482 1 489 1.89e-166 479
MS.gene99611.t1 MTR_7g063840 55.556 477 203 7 8 482 5 474 1.69e-164 473
MS.gene99611.t1 MTR_7g063830 54.339 484 178 9 1 481 1 444 1.12e-156 452
MS.gene99611.t1 MTR_7g063820 54.049 494 206 10 1 482 1 485 5.23e-154 447
MS.gene99611.t1 MTR_3g007740 54.393 478 170 10 8 476 5 443 8.01e-152 440
MS.gene99611.t1 MTR_7g063890 53.893 488 201 11 10 481 25 504 9.63e-144 422
MS.gene99611.t1 MTR_7g063670 50.103 485 191 8 10 482 13 458 4.07e-136 400
MS.gene99611.t1 MTR_7g066570 39.880 499 257 9 4 479 6 484 4.33e-110 337
MS.gene99611.t1 MTR_3g065200 44.079 456 200 11 12 462 3 408 4.62e-106 323
MS.gene99611.t1 MTR_7g066260 42.276 492 237 13 1 475 1 462 1.91e-105 323
MS.gene99611.t1 MTR_7g066430 40.748 481 267 6 13 475 5 485 5.91e-103 317
MS.gene99611.t1 MTR_7g066410 38.672 512 265 9 10 477 8 514 7.71e-103 317
MS.gene99611.t1 MTR_7g066410 24.268 239 156 6 6 229 278 506 2.07e-11 66.6
MS.gene99611.t1 MTR_7g058710 38.614 505 266 13 1 482 1 484 5.80e-101 311
MS.gene99611.t1 MTR_7g066480 39.331 478 206 10 12 476 16 422 3.19e-96 297
MS.gene99611.t1 MTR_7g066340 37.090 488 259 10 1 475 1 453 5.22e-92 288
MS.gene99611.t1 MTR_7g012680 38.294 504 237 14 1 482 1 452 1.51e-91 286
MS.gene99611.t1 MTR_7g066580 38.622 479 233 10 24 478 7 448 2.26e-90 283
MS.gene99611.t1 MTR_7g066580 26.695 236 148 9 11 230 214 440 3.83e-12 68.6
MS.gene99611.t1 MTR_7g066350 38.075 478 251 11 11 477 8 451 3.73e-89 280
MS.gene99611.t1 MTR_7g066360 41.273 487 224 15 2 471 4 445 7.55e-89 280
MS.gene99611.t1 MTR_7g066290 39.351 493 221 12 1 475 1 433 9.89e-89 278
MS.gene99611.t1 MTR_7g066490 38.055 473 203 11 12 475 16 407 1.28e-86 272
MS.gene99611.t1 MTR_7g066400 36.105 493 245 13 1 477 1 439 2.21e-85 270
MS.gene99611.t1 MTR_7g062270 69.399 183 55 1 6 187 3 185 1.03e-83 263
MS.gene99611.t1 MTR_1g041315 34.583 480 258 9 3 459 5 451 3.75e-83 265
MS.gene99611.t1 MTR_7g063720 53.785 251 94 5 235 482 2 233 6.89e-79 246
MS.gene99611.t1 MTR_7g063720 29.680 219 128 9 14 229 25 220 1.49e-15 76.6
MS.gene99611.t1 MTR_7g058700 35.343 481 206 11 24 482 531 928 5.95e-75 253
MS.gene99611.t1 MTR_4g019310 34.990 503 294 14 6 482 2 497 2.09e-73 240
MS.gene99611.t1 MTR_7g066310 32.836 469 220 8 11 475 6 383 5.98e-69 226
MS.gene99611.t1 MTR_7g063850 44.795 317 129 9 182 481 1 288 1.97e-66 216
MS.gene99611.t1 MTR_2g029400 32.427 478 233 9 2 465 4 405 8.17e-66 218
MS.gene99611.t1 MTR_4g017830 31.418 522 302 15 1 481 1 507 2.79e-59 204
MS.gene99611.t1 MTR_4g017440 31.094 521 306 17 1 481 1 508 1.49e-53 188
MS.gene99611.t1 MTR_4g017610 31.062 499 287 16 5 471 2 475 1.21e-52 185
MS.gene99611.t1 MTR_4g017410 31.358 523 277 18 6 481 3 490 5.85e-52 184
MS.gene99611.t1 MTR_7g066280 32.108 408 236 10 91 475 1 390 2.22e-51 180
MS.gene99611.t1 MTR_4g019340 31.377 494 271 17 10 463 36 501 8.55e-51 180
MS.gene99611.t1 MTR_4g017470 28.820 517 291 15 1 481 1 476 1.50e-47 171
MS.gene99611.t1 MTR_7g100420 38.199 322 173 7 156 471 92 393 6.88e-47 167
MS.gene99611.t1 MTR_7g100420 49.398 83 39 2 6 86 33 114 4.69e-12 68.2
MS.gene99611.t1 MTR_1g014060 44.175 206 107 6 21 222 9 210 1.53e-44 161
MS.gene99611.t1 MTR_1g014060 39.899 198 103 4 285 482 210 391 1.54e-33 130
MS.gene99611.t1 MTR_1g014060 28.372 215 142 6 268 475 13 222 3.19e-13 71.6
MS.gene99611.t1 MTR_7g066680 34.194 310 142 5 212 471 37 334 9.94e-43 155
MS.gene99611.t1 MTR_7g066680 26.047 215 145 8 6 214 80 286 2.27e-12 68.6
MS.gene99611.t1 MTR_4g017550 30.126 478 257 18 42 471 21 469 3.07e-37 142
MS.gene99611.t1 MTR_4g017550 29.362 235 131 9 13 228 248 466 1.52e-12 70.1
MS.gene99611.t1 MTR_7g063690 48.276 145 73 1 140 282 78 222 2.86e-35 132
MS.gene99611.t1 MTR_7g063690 70.909 55 15 1 8 61 7 61 1.21e-15 77.0
MS.gene99611.t1 MTR_8g023240 26.096 479 299 15 13 469 38 483 7.96e-35 137
MS.gene99611.t1 MTR_8g445860 32.787 244 140 8 3 235 8 238 3.78e-25 103
MS.gene99611.t1 MTR_1g115440 32.540 252 138 10 1 234 1 238 3.06e-23 98.6
MS.gene99611.t1 MTR_1g115440 31.169 231 135 9 255 469 11 233 4.38e-21 92.4
MS.gene99611.t1 MTR_7g063760 56.757 74 31 1 410 482 1 74 8.54e-22 89.4
MS.gene99611.t1 MTR_0150s0010 30.081 246 145 8 5 234 3 237 1.11e-21 94.4
MS.gene99611.t1 MTR_7g066390 54.795 73 33 0 403 475 50 122 7.59e-19 84.0
MS.gene99611.t1 MTR_2g067310 35.393 178 75 6 18 195 53 190 1.73e-15 76.3
MS.gene99611.t1 MTR_7g063870 37.500 128 64 4 138 256 75 195 2.05e-13 70.5
MS.gene99611.t1 MTR_7g063870 55.357 56 25 0 6 61 25 80 4.34e-13 69.7
MS.gene99611.t1 MTR_1g115455 27.344 256 142 8 1 235 1 233 3.39e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99611.t1 AT3G09140 32.239 518 287 15 1 477 1 495 9.43e-66 220
MS.gene99611.t1 AT5G01120 31.213 503 281 13 13 474 10 488 4.33e-61 208
MS.gene99611.t1 AT3G09140 30.586 546 287 16 1 477 1 523 8.87e-61 207
MS.gene99611.t1 AT5G01150 30.518 521 278 14 7 481 4 486 2.41e-60 206
MS.gene99611.t1 AT5G01130 31.288 489 282 11 7 482 4 451 5.05e-60 204
MS.gene99611.t1 AT3G09110 34.835 333 200 6 14 338 11 334 3.27e-54 185
MS.gene99611.t1 AT5G43240 31.928 498 282 16 13 471 10 489 9.36e-54 189
MS.gene99611.t1 AT5G43240 31.928 498 282 16 13 471 10 489 9.36e-54 189
MS.gene99611.t1 AT5G43240 31.928 498 282 16 13 471 10 489 9.36e-54 189
MS.gene99611.t1 AT5G01140 28.947 494 294 13 7 482 4 458 6.08e-53 186
MS.gene99611.t1 AT3G09120 35.913 323 169 8 11 309 5 313 6.37e-51 176
MS.gene99611.t1 AT3G09120 27.500 240 133 6 255 469 6 229 8.85e-11 63.5
MS.gene99611.t1 AT5G37320 28.911 505 286 18 13 477 10 481 6.93e-40 150
MS.gene99611.t1 AT5G43240 29.310 348 200 13 155 471 13 345 6.92e-19 88.6

Find 87 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCGAATATT+TGG 0.115220 7.1:-39205658 MS.gene99611:CDS
TAACTAGCTTCAGAATAATT+TGG 0.160980 7.1:+39205767 None:intergenic
TTTAGTCTGTTCAAGGAATT+TGG 0.172599 7.1:-39206055 MS.gene99611:CDS
ATCCTTGGCGGAGAGATTTA+AGG 0.228622 7.1:+39206152 None:intergenic
CTCCGCCAAGGATTTGTTAA+TGG 0.248773 7.1:-39206142 MS.gene99611:CDS
CTTGACTCCAATTTCAGCTT+TGG 0.260143 7.1:-39205266 MS.gene99611:CDS
CCTGGTGTTCATGAATATTA+TGG 0.302474 7.1:-39205475 MS.gene99611:CDS
GTATTTCGCTACAGATGATT+TGG 0.304476 7.1:-39205299 MS.gene99611:CDS
TGATTGCTTAACTTTAACTC+TGG 0.316147 7.1:+39205517 None:intergenic
CTATAAAAGTGTGGCAGATC+TGG 0.332749 7.1:-39206401 MS.gene99611:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.1:+39205259 None:intergenic
TTGACTCCAATTTCAGCTTT+GGG 0.338051 7.1:-39205265 MS.gene99611:CDS
CAGTAATAATGATATTGTTT+TGG 0.346570 7.1:-39205431 MS.gene99611:CDS
CTTGTATAATCAATACAGTT+TGG 0.351386 7.1:+39206079 None:intergenic
AGATTCTTAACAATGCCTTT+AGG 0.354347 7.1:-39206493 MS.gene99611:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.1:+39206573 None:intergenic
TGAACACCAGGTTCAAGAAT+TGG 0.375903 7.1:+39205487 None:intergenic
TTCTGTGATGTTGAAATTAG+TGG 0.377162 7.1:-39205796 MS.gene99611:CDS
TACAAGCTTTAGTCTGTTCA+AGG 0.384290 7.1:-39206062 MS.gene99611:CDS
TACTCCTCTTGCTGATTTGA+AGG 0.385097 7.1:-39205224 MS.gene99611:CDS
ATCTGCCTTAACAAATGGTT+TGG 0.386717 7.1:-39205003 MS.gene99611:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.1:-39206476 MS.gene99611:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.1:-39206541 MS.gene99611:CDS
TCAACATCTGCCTTAACAAA+TGG 0.422887 7.1:-39205008 MS.gene99611:CDS
AACCATCCCTTGAGAAATCA+AGG 0.425614 7.1:-39205825 MS.gene99611:CDS
GCTTTCCAAGACAACTTTGA+CGG 0.432123 7.1:-39205866 MS.gene99611:CDS
TTTGGAGAGAATTGTTCCTT+TGG 0.438718 7.1:-39205640 MS.gene99611:CDS
GATTGCTTAACTTTAACTCT+GGG 0.444533 7.1:+39205518 None:intergenic
CAAATCCGTCAAAGTTGTCT+TGG 0.450921 7.1:+39205861 None:intergenic
GTGAGCCAAACCATTTGTTA+AGG 0.458136 7.1:+39204998 None:intergenic
TCACATGTTAACCGAAGTTA+AGG 0.465854 7.1:-39204979 MS.gene99611:CDS
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.1:-39205999 MS.gene99611:intron
TAAATATTTGATATCAAAAG+AGG 0.486512 7.1:-39205572 MS.gene99611:CDS
GGTGTAGATAAGAGTTATGC+TGG 0.489254 7.1:-39205391 MS.gene99611:CDS
TACTGGGGTGATTCCTTGTG+AGG 0.493234 7.1:-39205344 MS.gene99611:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.1:-39205676 MS.gene99611:CDS
AACCTTGATTTCTCAAGGGA+TGG 0.498568 7.1:+39205823 None:intergenic
AGATAAACCTTGATTTCTCA+AGG 0.509788 7.1:+39205818 None:intergenic
TCTGTAGCGAAATACATAGT+TGG 0.510023 7.1:+39205307 None:intergenic
CAACATTTGTTTGATTGTCT+CGG 0.512040 7.1:+39206360 None:intergenic
AGTTGTCACTATTGGCATCA+AGG 0.520473 7.1:-39205197 MS.gene99611:CDS
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.1:-39205730 MS.gene99611:CDS
CAGCAAGAGGAGTATTCAAT+CGG 0.523415 7.1:+39205233 None:intergenic
TCATTTCTCCTCCTTAACTT+CGG 0.524075 7.1:+39204968 None:intergenic
CCTTGTGAGGGTTATGTGAA+GGG 0.527421 7.1:-39205331 MS.gene99611:CDS
TATCAAAAGAGGCTAAGAAC+AGG 0.528682 7.1:-39205561 MS.gene99611:CDS
GCGATAGAAGCAAACACTAA+AGG 0.532003 7.1:+39206246 None:intergenic
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.1:-39205728 MS.gene99611:CDS
CTACACCATTAACAAATCCT+TGG 0.535180 7.1:+39206137 None:intergenic
GCACATGTGAAGTATATTGT+TGG 0.537576 7.1:+39206271 None:intergenic
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.1:-39206536 MS.gene99611:CDS
TTCCTTAAATCTCTCCGCCA+AGG 0.540627 7.1:-39206154 MS.gene99611:CDS
CAAAGCTGAAATTGGAGTCA+AGG 0.541710 7.1:+39205267 None:intergenic
ATATTACCAATTCTTGAACC+TGG 0.551456 7.1:-39205493 MS.gene99611:CDS
CACCATTAACAAATCCTTGG+CGG 0.552287 7.1:+39206140 None:intergenic
TTTAACTCTGGGGCAATGCA+AGG 0.554669 7.1:+39205529 None:intergenic
AGAAGCAGGGAAGGACTTTG+TGG 0.556414 7.1:-39206527 MS.gene99611:CDS
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.1:-39206023 MS.gene99611:CDS
CCATAATATTCATGAACACC+AGG 0.559401 7.1:+39205475 None:intergenic
AAAGCTGAAATTGGAGTCAA+GGG 0.571174 7.1:+39205268 None:intergenic
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.1:-39206540 MS.gene99611:CDS
TCCTTGTGAGGGTTATGTGA+AGG 0.575859 7.1:-39205332 MS.gene99611:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.1:-39206467 MS.gene99611:CDS
TGTTCCTTTGGAAGCATCAG+CGG 0.578272 7.1:-39205628 MS.gene99611:CDS
TAAAGTTCCGCTGAGTTCGT+TGG 0.578493 7.1:+39206331 None:intergenic
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.1:+39206478 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.1:-39206453 MS.gene99611:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.1:-39206439 MS.gene99611:CDS
ACTGGGGTGATTCCTTGTGA+GGG 0.590492 7.1:-39205343 MS.gene99611:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.1:-39205729 MS.gene99611:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.1:-39206454 MS.gene99611:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.1:+39206468 None:intergenic
GATAAACCTTGATTTCTCAA+GGG 0.605433 7.1:+39205819 None:intergenic
GCATAACTCTTATCTACACC+AGG 0.610698 7.1:+39205394 None:intergenic
CATGTTAACCGAAGTTAAGG+AGG 0.619389 7.1:-39204976 MS.gene99611:CDS
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.1:-39206410 MS.gene99611:CDS
CCCTTCACATAACCCTCACA+AGG 0.628562 7.1:+39205331 None:intergenic
TATAAGAAAATCAGATAACA+AGG 0.631180 7.1:-39205746 MS.gene99611:CDS
GATAAACATAAATGTCGATG+TGG 0.637729 7.1:-39206199 MS.gene99611:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.1:+39205664 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.1:-39206605 MS.gene99611:CDS
AGTGTGGCAGATCTGGATGT+AGG 0.651804 7.1:-39206394 MS.gene99611:CDS
CAATCCGCTGATGCTTCCAA+AGG 0.653547 7.1:+39205624 None:intergenic
ATAGAAGCAAACACTAAAGG+CGG 0.658526 7.1:+39206249 None:intergenic
ATTGCTTAACTTTAACTCTG+GGG 0.673440 7.1:+39205519 None:intergenic
GCTGCAACCAACGAACTCAG+CGG 0.734689 7.1:-39206338 MS.gene99611:CDS
TGTCACTATTGGCATCAAGG+AGG 0.742676 7.1:-39205194 MS.gene99611:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTACTATTTTATATATAC+AGG - chr7.1:39205667-39205686 MS.gene99611:CDS 10.0%
!! ATAAAAATGAATTTATCTAC+TGG - chr7.1:39206220-39206239 MS.gene99611:CDS 15.0%
!! TAAAAATGAATTTATCTACT+GGG - chr7.1:39206221-39206240 MS.gene99611:CDS 15.0%
!! TAAATATTTGATATCAAAAG+AGG - chr7.1:39206009-39206028 MS.gene99611:CDS 15.0%
!!! GTCTAATATAAATTTTACTA+TGG + chr7.1:39206417-39206436 None:intergenic 15.0%
!! AAAAATGAATTTATCTACTG+GGG - chr7.1:39206222-39206241 MS.gene99611:CDS 20.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.1:39205835-39205854 MS.gene99611:CDS 20.0%
!! TATTTAAATGTTCTATGCTT+GGG - chr7.1:39206451-39206470 MS.gene99611:CDS 20.0%
!! TTATTTAAATGTTCTATGCT+TGG - chr7.1:39206450-39206469 MS.gene99611:CDS 20.0%
!!! CAGTAATAATGATATTGTTT+TGG - chr7.1:39206150-39206169 MS.gene99611:CDS 20.0%
!!! TATGGTTATTTTAAAAGTGT+TGG - chr7.1:39206124-39206143 MS.gene99611:CDS 20.0%
! ATTTAAATGTTCTATGCTTG+GGG - chr7.1:39206452-39206471 MS.gene99611:CDS 25.0%
! CTTGTATAATCAATACAGTT+TGG + chr7.1:39205505-39205524 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.1:39205013-39205032 MS.gene99611:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.1:39205901-39205920 MS.gene99611:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.1:39205902-39205921 MS.gene99611:intron 25.0%
!! TAACTAGCTTCAGAATAATT+TGG + chr7.1:39205817-39205836 None:intergenic 25.0%
AAACTCACTCTATAAAAGTG+TGG - chr7.1:39205171-39205190 MS.gene99611:intron 30.0%
AACACTACAACAAGACAATA+AGG + chr7.1:39206527-39206546 None:intergenic 30.0%
AAGGAAAAAGTTGTCACTAT+TGG - chr7.1:39206376-39206395 MS.gene99611:CDS 30.0%
AGATAAACCTTGATTTCTCA+AGG + chr7.1:39205766-39205785 None:intergenic 30.0%
AGATTCTTAACAATGCCTTT+AGG - chr7.1:39205088-39205107 MS.gene99611:intron 30.0%
ATATTACCAATTCTTGAACC+TGG - chr7.1:39206088-39206107 MS.gene99611:CDS 30.0%
ATTGCTTAACTTTAACTCTG+GGG + chr7.1:39206065-39206084 None:intergenic 30.0%
CAACATTTGTTTGATTGTCT+CGG + chr7.1:39205224-39205243 None:intergenic 30.0%
GATAAACATAAATGTCGATG+TGG - chr7.1:39205382-39205401 MS.gene99611:CDS 30.0%
GATAAACCTTGATTTCTCAA+GGG + chr7.1:39205765-39205784 None:intergenic 30.0%
GATTGCTTAACTTTAACTCT+GGG + chr7.1:39206066-39206085 None:intergenic 30.0%
TGATTGCTTAACTTTAACTC+TGG + chr7.1:39206067-39206086 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.1:39205011-39205030 None:intergenic 30.0%
TTCTGTGATGTTGAAATTAG+TGG - chr7.1:39205785-39205804 MS.gene99611:CDS 30.0%
TTTAAATGTTCTATGCTTGG+GGG - chr7.1:39206453-39206472 MS.gene99611:CDS 30.0%
TTTAGTCTGTTCAAGGAATT+TGG - chr7.1:39205526-39205545 MS.gene99611:CDS 30.0%
! TTGGTTCAAATTTTCAAACC+TGG - chr7.1:39206169-39206188 MS.gene99611:CDS 30.0%
!!! GTAGTGTTTTAGCATTTTGA+AGG - chr7.1:39206539-39206558 MS.gene99611:CDS 30.0%
AAAGCTGAAATTGGAGTCAA+GGG + chr7.1:39206316-39206335 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.1:39206325-39206344 None:intergenic 35.0%
ATAGAAGCAAACACTAAAGG+CGG + chr7.1:39205335-39205354 None:intergenic 35.0%
ATCTGCCTTAACAAATGGTT+TGG - chr7.1:39206578-39206597 MS.gene99611:CDS 35.0%
CCATAATATTCATGAACACC+AGG + chr7.1:39206109-39206128 None:intergenic 35.0%
CCTGGTGTTCATGAATATTA+TGG - chr7.1:39206106-39206125 MS.gene99611:CDS 35.0%
CTACACCATTAACAAATCCT+TGG + chr7.1:39205447-39205466 None:intergenic 35.0%
GCACATGTGAAGTATATTGT+TGG + chr7.1:39205313-39205332 None:intergenic 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7.1:39205923-39205942 MS.gene99611:intron 35.0%
GTATTTCGCTACAGATGATT+TGG - chr7.1:39206282-39206301 MS.gene99611:CDS 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.1:39205128-39205147 MS.gene99611:intron 35.0%
TATCAAAAGAGGCTAAGAAC+AGG - chr7.1:39206020-39206039 MS.gene99611:CDS 35.0%
TCAACATCTGCCTTAACAAA+TGG - chr7.1:39206573-39206592 MS.gene99611:CDS 35.0%
TCACATGTTAACCGAAGTTA+AGG - chr7.1:39206602-39206621 MS.gene99611:CDS 35.0%
TCATTTCTCCTCCTTAACTT+CGG + chr7.1:39206616-39206635 None:intergenic 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7.1:39205582-39205601 MS.gene99611:CDS 35.0%
TCTGTAGCGAAATACATAGT+TGG + chr7.1:39206277-39206296 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.1:39205546-39205565 MS.gene99611:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.1:39206316-39206335 MS.gene99611:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7.1:39205905-39205924 MS.gene99611:intron 35.0%
TTTGGAGAGAATTGTTCCTT+TGG - chr7.1:39205941-39205960 MS.gene99611:intron 35.0%
! CAAGCACAAAACCTTTTCTT+TGG + chr7.1:39205596-39205615 None:intergenic 35.0%
! TACAAGCTTTAGTCTGTTCA+AGG - chr7.1:39205519-39205538 MS.gene99611:CDS 35.0%
! TTTTCCTTCAAATCAGCAAG+AGG + chr7.1:39206364-39206383 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.1:39205851-39205870 MS.gene99611:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.1:39205852-39205871 MS.gene99611:CDS 35.0%
AACCATCCCTTGAGAAATCA+AGG - chr7.1:39205756-39205775 MS.gene99611:CDS 40.0%
AACCTTGATTTCTCAAGGGA+TGG + chr7.1:39205761-39205780 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.1:39205106-39205125 None:intergenic 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7.1:39206384-39206403 MS.gene99611:CDS 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7.1:39205920-39205939 None:intergenic 40.0%
CAAAGCTGAAATTGGAGTCA+AGG + chr7.1:39206317-39206336 None:intergenic 40.0%
CAAATCCGTCAAAGTTGTCT+TGG + chr7.1:39205723-39205742 None:intergenic 40.0%
CACCATTAACAAATCCTTGG+CGG + chr7.1:39205444-39205463 None:intergenic 40.0%
CATGTTAACCGAAGTTAAGG+AGG - chr7.1:39206605-39206624 MS.gene99611:CDS 40.0%
CTTGACTCCAATTTCAGCTT+TGG - chr7.1:39206315-39206334 MS.gene99611:CDS 40.0%
GCATAACTCTTATCTACACC+AGG + chr7.1:39206190-39206209 None:intergenic 40.0%
GCGATAGAAGCAAACACTAA+AGG + chr7.1:39205338-39205357 None:intergenic 40.0%
GCTTTCCAAGACAACTTTGA+CGG - chr7.1:39205715-39205734 MS.gene99611:CDS 40.0%
GGTGTAGATAAGAGTTATGC+TGG - chr7.1:39206190-39206209 MS.gene99611:CDS 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.1:39205127-39205146 MS.gene99611:intron 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.1:39204976-39204995 MS.gene99611:CDS 40.0%
TCAAGCTAACGCACCAAAAT+TGG + chr7.1:39206482-39206501 None:intergenic 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7.1:39206097-39206116 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.1:39205105-39205124 MS.gene99611:intron 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7.1:39205562-39205581 None:intergenic 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7.1:39205561-39205580 None:intergenic 40.0%
! CTATAAAAGTGTGGCAGATC+TGG - chr7.1:39205180-39205199 MS.gene99611:intron 40.0%
! GTGAGCCAAACCATTTGTTA+AGG + chr7.1:39206586-39206605 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.1:39205040-39205059 MS.gene99611:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.1:39205041-39205060 MS.gene99611:CDS 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7.1:39205853-39205872 MS.gene99611:CDS 40.0%
!! CAGCAAGAGGAGTATTCAAT+CGG + chr7.1:39206351-39206370 None:intergenic 40.0%
!! TACTCCTCTTGCTGATTTGA+AGG - chr7.1:39206357-39206376 MS.gene99611:CDS 40.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.1:39205142-39205161 MS.gene99611:intron 45.0%
ATCCTTGGCGGAGAGATTTA+AGG + chr7.1:39205432-39205451 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.1:39205114-39205133 MS.gene99611:intron 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7.1:39205558-39205577 MS.gene99611:CDS 45.0%
CCTTGTGAGGGTTATGTGAA+GGG - chr7.1:39206250-39206269 MS.gene99611:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.1:39205116-39205135 None:intergenic 45.0%
TAAAGTTCCGCTGAGTTCGT+TGG + chr7.1:39205253-39205272 None:intergenic 45.0%
TCCTTGTGAGGGTTATGTGA+AGG - chr7.1:39206249-39206268 MS.gene99611:CDS 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7.1:39206387-39206406 MS.gene99611:CDS 45.0%
TTCCTTAAATCTCTCCGCCA+AGG - chr7.1:39205427-39205446 MS.gene99611:CDS 45.0%
!! CTCCGCCAAGGATTTGTTAA+TGG - chr7.1:39205439-39205458 MS.gene99611:CDS 45.0%
!! TGTTCCTTTGGAAGCATCAG+CGG - chr7.1:39205953-39205972 MS.gene99611:intron 45.0%
!! TTTAACTCTGGGGCAATGCA+AGG + chr7.1:39206055-39206074 None:intergenic 45.0%
ACTGGGGTGATTCCTTGTGA+GGG - chr7.1:39206238-39206257 MS.gene99611:CDS 50.0%
AGAAGCAGGGAAGGACTTTG+TGG - chr7.1:39205054-39205073 MS.gene99611:intron 50.0%
AGTGTGGCAGATCTGGATGT+AGG - chr7.1:39205187-39205206 MS.gene99611:intron 50.0%
CAATCCGCTGATGCTTCCAA+AGG + chr7.1:39205960-39205979 None:intergenic 50.0%
CCCTTCACATAACCCTCACA+AGG + chr7.1:39206253-39206272 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.1:39205045-39205064 MS.gene99611:intron 50.0%
TACTGGGGTGATTCCTTGTG+AGG - chr7.1:39206237-39206256 MS.gene99611:CDS 50.0%
! TGCTTGGGGGTTGCCAATTT+TGG - chr7.1:39206466-39206485 MS.gene99611:CDS 50.0%
GCTGCAACCAACGAACTCAG+CGG - chr7.1:39205243-39205262 MS.gene99611:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 39204968 39206635 39204968 ID=MS.gene99611
chr7.1 mRNA 39204968 39206635 39204968 ID=MS.gene99611.t1;Parent=MS.gene99611
chr7.1 exon 39206000 39206635 39206000 ID=MS.gene99611.t1.exon1;Parent=MS.gene99611.t1
chr7.1 CDS 39206000 39206635 39206000 ID=cds.MS.gene99611.t1;Parent=MS.gene99611.t1
chr7.1 exon 39205195 39205914 39205195 ID=MS.gene99611.t1.exon2;Parent=MS.gene99611.t1
chr7.1 CDS 39205195 39205914 39205195 ID=cds.MS.gene99611.t1;Parent=MS.gene99611.t1
chr7.1 exon 39204968 39205060 39204968 ID=MS.gene99611.t1.exon3;Parent=MS.gene99611.t1
chr7.1 CDS 39204968 39205060 39204968 ID=cds.MS.gene99611.t1;Parent=MS.gene99611.t1
Gene Sequence

>MS.gene99611

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGATTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTGGATGTAGGTTGTTTCTCTACCGAGACAATCAAACAAATGTTGCTGCAACCAACGAACTCAGCGGAACTTTATTGCAGCGCTCTTAAAATCAACATTGACGACACTCAACCAACAATATACTTCACATGTGCCGCCTTTAGTGTTTGCTTCTATCGCGATATGATCACTTCAACGTATAAAGATAAACATAAATGTCGATGTGGTCGTTCTTTTACAGATCAAGTTTTCCTTAAATCTCTCCGCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATTGATTATACAAGCTTTAGTCTGTTCAAGGAATTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGCTTGAATATGTTTGTTCATAACTTCTCTCTTAAATTTTTGATTGATTATAATTACTATTACTATTTTATATATACAGGTACTTGATCTGCTTAAATGTTCTTTGCTTTCCAAGACAACTTTGACGGATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAAATCAAGGTTTATCTTCTGTGATGTTGAAATTAGTGGCAATATCCAAATTATTCTGAAGCTAGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAATTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGAGAGAATTGTTCCTTTGGAAGCATCAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAAAAGAGGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCAGAGTTAAAGTTAAGCAATCAGATATTACCAATTCTTGAACCTGGTGTTCATGAATATTATGGTTATTTTAAAAGTGTTGGTAACAGTAATAATGATATTGTTTTGGTTCAAATTTTCAAACCTGGTGTAGATAAGAGTTATGCTGGAAATTTTATAAAAATGAATTTATCTACTGGGGTGATTCCTTGTGAGGGTTATGTGAAGGGTCCAACTATGTATTTCGCTACAGATGATTTGGTTGTAGCACCCTTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCTCTTGCTGATTTGAAGGAAAAAGTTGTCACTATTGGCATCAAGGAGGTAAACCATAGTAAAATTTATATTAGACTTTAATCTTCAGTTTATTTAAATGTTCTATGCTTGGGGGTTGCCAATTTTGGTGCGTTAGCTTGAAAATAAAATATGCTTATGTTTACCTTATTGTCTTGTTGTAGTGTTTTAGCATTTTGAAGGCTTCTTTGACATCAACATCTGCCTTAACAAATGGTTTGGCTCACATGTTAACCGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene99611.t1

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCRFLTMPLGTIARLVEKESSIGQVTVGCLNSLYKSVADLDVGCFSTETIKQMLLQPTNSAELYCSALKINIDDTQPTIYFTCAAFSVCFYRDMITSTYKDKHKCRCGRSFTDQVFLKSLRQGFVNGVATFVITDDLTIKPNCIDYTSFSLFKEFGIKNPSSVKEVVLNVTKEKVLDLLKCSLLSKTTLTDLFLEKKPSLEKSRFIFCDVEISGNIQIILKLVIRKSDNKVLYAQGEQDFANLLLSFLTFPLGGIVRIFGENCSFGSISGLYKSIVELNENKYLISKEAKNRLVDPCIAPELKLSNQILPILEPGVHEYYGYFKSVGNSNNDIVLVQIFKPGVDKSYAGNFIKMNLSTGVIPCEGYVKGPTMYFATDDLVVAPLTPISALGLLNRLNTPLADLKEKVVTIGIKECFSILKASLTSTSALTNGLAHMLTEVKEEK