AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055072

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055072.t1 MTR_7g066430 84.970 499 74 1 1 499 1 498 0.0 864
MS.gene055072.t1 MTR_7g066410 52.079 505 218 5 4 486 10 512 3.29e-173 498
MS.gene055072.t1 MTR_7g066570 47.782 496 228 10 5 492 15 487 9.62e-139 412
MS.gene055072.t1 MTR_7g012680 44.376 489 220 9 4 491 14 451 3.22e-123 368
MS.gene055072.t1 MTR_7g058710 42.536 489 252 10 4 486 12 477 3.51e-122 367
MS.gene055072.t1 MTR_7g066260 42.710 487 236 9 4 486 15 462 5.85e-118 356
MS.gene055072.t1 MTR_7g066260 28.205 234 150 7 255 480 12 235 2.29e-16 82.0
MS.gene055072.t1 MTR_7g066340 41.922 489 231 11 4 486 12 453 3.62e-111 338
MS.gene055072.t1 MTR_1g041315 40.956 481 227 10 4 470 14 451 2.87e-110 336
MS.gene055072.t1 MTR_7g066580 40.481 499 231 12 10 493 1 448 2.19e-109 333
MS.gene055072.t1 MTR_7g066350 41.736 484 232 12 4 483 9 446 5.30e-108 329
MS.gene055072.t1 MTR_7g062280 39.053 507 254 10 4 486 10 485 5.64e-106 325
MS.gene055072.t1 MTR_7g062300 39.113 496 249 8 4 483 12 470 5.80e-101 312
MS.gene055072.t1 MTR_7g063660 38.540 493 263 8 4 486 9 471 5.37e-99 307
MS.gene055072.t1 MTR_7g063660 27.706 231 145 7 257 480 8 223 8.78e-14 73.9
MS.gene055072.t1 MTR_7g066400 38.980 490 224 13 2 482 10 433 1.62e-97 302
MS.gene055072.t1 MTR_7g066360 39.431 492 243 11 2 489 12 452 4.39e-97 302
MS.gene055072.t1 MTR_7g063900 40.771 493 262 12 4 486 10 482 1.73e-96 301
MS.gene055072.t1 MTR_7g063900 25.862 232 150 8 257 480 9 226 3.92e-14 75.1
MS.gene055072.t1 MTR_7g066290 38.980 490 221 10 4 486 15 433 5.52e-95 295
MS.gene055072.t1 MTR_7g063880 37.782 487 264 11 4 486 11 462 1.71e-90 285
MS.gene055072.t1 MTR_7g058700 38.677 499 189 11 16 499 531 927 4.11e-90 295
MS.gene055072.t1 MTR_7g063820 38.211 492 281 9 5 491 11 484 2.53e-89 282
MS.gene055072.t1 MTR_7g063840 37.347 490 266 12 5 486 11 467 5.31e-89 281
MS.gene055072.t1 MTR_7g066480 49.133 346 144 9 4 336 16 342 1.20e-88 278
MS.gene055072.t1 MTR_7g066480 62.651 83 31 0 412 494 347 429 1.59e-24 106
MS.gene055072.t1 MTR_7g063830 38.776 490 240 12 5 491 11 443 5.41e-88 277
MS.gene055072.t1 MTR_7g066490 46.884 337 153 7 3 336 15 328 3.46e-85 269
MS.gene055072.t1 MTR_7g066490 61.446 83 32 0 412 494 333 415 1.13e-23 103
MS.gene055072.t1 MTR_2g029400 37.131 474 213 10 4 475 14 404 3.46e-85 269
MS.gene055072.t1 MTR_3g007740 37.782 487 246 12 4 486 9 442 1.66e-84 268
MS.gene055072.t1 MTR_7g063920 36.049 491 235 9 4 486 11 430 5.17e-83 264
MS.gene055072.t1 MTR_4g019310 36.620 497 279 13 4 482 8 486 1.74e-82 265
MS.gene055072.t1 MTR_7g063890 38.677 499 263 12 4 486 27 498 1.04e-77 253
MS.gene055072.t1 MTR_7g063890 28.696 230 145 6 257 480 26 242 5.95e-19 90.1
MS.gene055072.t1 MTR_7g063670 37.628 489 245 9 5 486 16 451 3.55e-76 247
MS.gene055072.t1 MTR_3g065200 34.183 471 244 12 3 472 2 407 1.11e-74 243
MS.gene055072.t1 MTR_4g019340 34.545 495 267 13 5 474 39 501 1.62e-66 223
MS.gene055072.t1 MTR_4g019340 27.600 250 145 7 257 482 37 274 5.41e-11 65.1
MS.gene055072.t1 MTR_4g017830 33.858 508 295 14 5 488 13 503 8.29e-66 222
MS.gene055072.t1 MTR_4g017830 27.801 241 150 5 255 482 9 238 4.78e-14 75.1
MS.gene055072.t1 MTR_4g017440 32.347 507 303 14 5 488 15 504 5.42e-65 219
MS.gene055072.t1 MTR_7g066680 42.532 308 134 6 208 482 37 334 1.47e-63 211
MS.gene055072.t1 MTR_4g017610 32.932 498 276 17 7 483 16 476 4.11e-63 213
MS.gene055072.t1 MTR_4g017610 28.163 245 150 5 253 482 8 241 6.21e-16 80.5
MS.gene055072.t1 MTR_4g017410 31.298 524 304 16 1 496 1 496 6.58e-59 203
MS.gene055072.t1 MTR_4g017470 31.274 518 282 11 5 496 13 482 4.94e-55 192
MS.gene055072.t1 MTR_7g066280 33.179 431 220 13 83 486 1 390 1.56e-54 189
MS.gene055072.t1 MTR_4g017550 32.860 493 277 19 18 482 3 469 4.66e-52 184
MS.gene055072.t1 MTR_1g014060 43.602 211 115 3 13 223 9 215 2.80e-51 179
MS.gene055072.t1 MTR_1g014060 42.439 205 93 4 288 491 210 390 6.65e-37 140
MS.gene055072.t1 MTR_1g014060 28.774 212 132 7 267 471 9 208 9.15e-16 79.7
MS.gene055072.t1 MTR_7g066310 39.764 254 102 3 246 486 168 383 1.95e-47 169
MS.gene055072.t1 MTR_7g066310 46.809 141 73 2 4 143 7 146 9.06e-35 135
MS.gene055072.t1 MTR_7g063720 39.655 232 97 5 261 483 26 223 3.15e-41 148
MS.gene055072.t1 MTR_7g063720 28.261 230 129 7 2 225 21 220 2.23e-16 79.0
MS.gene055072.t1 MTR_7g100420 37.003 327 176 8 159 482 94 393 5.17e-38 144
MS.gene055072.t1 MTR_7g063850 35.294 272 147 9 238 504 46 293 4.02e-36 136
MS.gene055072.t1 MTR_7g062270 40.116 172 99 1 5 176 11 178 3.39e-35 135
MS.gene055072.t1 MTR_8g023240 27.181 493 291 18 5 478 38 481 1.26e-31 128
MS.gene055072.t1 MTR_7g066390 52.055 73 35 0 414 486 50 122 1.97e-17 80.1
MS.gene055072.t1 MTR_7g063690 37.086 151 86 3 135 285 81 222 3.08e-17 81.6
MS.gene055072.t1 MTR_7g063690 62.500 48 18 0 5 52 13 60 1.22e-11 65.1
MS.gene055072.t1 MTR_8g445860 28.807 243 148 7 2 233 11 239 3.61e-17 81.3
MS.gene055072.t1 MTR_4g019240 44.330 97 46 2 5 93 14 110 4.50e-16 76.6
MS.gene055072.t1 MTR_1g115440 28.631 241 145 8 4 230 11 238 6.61e-14 72.0
MS.gene055072.t1 MTR_0150s0010 26.316 247 143 6 4 230 10 237 1.34e-13 70.9
MS.gene055072.t1 MTR_2g067310 31.447 159 66 4 15 173 58 173 5.58e-13 69.3
MS.gene055072.t1 MTR_1g115455 27.273 253 138 9 2 233 7 234 1.18e-12 68.2
MS.gene055072.t1 MTR_7g063760 52.239 67 31 1 421 486 1 67 1.26e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055072.t1 AT5G01120 33.533 501 285 13 5 482 10 485 8.08e-61 208
MS.gene055072.t1 AT5G01140 32.099 486 284 13 4 486 9 451 9.04e-61 207
MS.gene055072.t1 AT5G43240 31.663 499 301 12 5 482 10 489 1.94e-60 207
MS.gene055072.t1 AT5G43240 31.663 499 301 12 5 482 10 489 1.94e-60 207
MS.gene055072.t1 AT5G43240 31.663 499 301 12 5 482 10 489 1.94e-60 207
MS.gene055072.t1 AT5G01150 30.814 516 319 11 4 505 9 500 2.44e-58 201
MS.gene055072.t1 AT3G09140 31.862 521 299 17 2 492 7 501 3.16e-58 201
MS.gene055072.t1 AT3G09140 24.896 241 164 6 255 480 6 244 5.98e-12 68.2
MS.gene055072.t1 AT3G09140 30.474 548 299 17 2 492 7 529 1.58e-55 194
MS.gene055072.t1 AT3G09110 35.395 291 180 5 4 293 9 292 6.02e-50 175
MS.gene055072.t1 AT3G09120 35.737 319 184 9 4 312 6 313 1.03e-49 173
MS.gene055072.t1 AT3G09120 25.532 235 158 5 255 480 3 229 8.89e-13 69.7
MS.gene055072.t1 AT5G01130 30.612 490 271 15 4 482 9 440 4.90e-49 175
MS.gene055072.t1 AT5G37320 29.264 516 299 12 3 491 8 484 5.16e-45 165
MS.gene055072.t1 AT5G43240 28.653 349 192 12 160 482 28 345 1.15e-22 100

Find 82 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCGAAGAACAACAATTT+TGG 0.193641 7.4:-38024292 MS.gene055072:CDS
TATTCTTCCATTGAATTCTT+TGG 0.235584 7.4:+38024239 None:intergenic
GGGGATTCCTTCTTCCGATT+TGG 0.309886 7.4:-38022941 MS.gene055072:CDS
AACTCTTTCGAAGTAATATA+TGG 0.319176 7.4:+38023129 None:intergenic
CTTACTTTCTCAATGTTAGA+TGG 0.325555 7.4:+38024353 None:intergenic
CGGGGTAGAACACATGTTAA+AGG 0.327870 7.4:-38023394 MS.gene055072:CDS
TTGAATTGGTGGGCAAGTTT+AGG 0.335304 7.4:+38023267 None:intergenic
CAAATTTAAAATGCAGTTGC+GGG 0.349657 7.4:-38024106 MS.gene055072:CDS
ACTGCCCAACCCTGTTGTAT+TGG 0.353634 7.4:-38023565 MS.gene055072:CDS
ATACAAGAGCATTCTTGAAT+TGG 0.356482 7.4:-38023340 MS.gene055072:CDS
TTGTCAAAATCCAATACAAC+AGG 0.360905 7.4:+38023555 None:intergenic
TCGTCTTCTGCTCTGACTAA+TGG 0.361646 7.4:-38022753 MS.gene055072:CDS
AAATTGTTGTTCTTCGAGAT+TGG 0.371839 7.4:+38024295 None:intergenic
CTAGTGACACAAAATATATT+AGG 0.371958 7.4:+38023204 None:intergenic
CCATGCATATTTAACTGCTC+TGG 0.374280 7.4:-38023157 MS.gene055072:CDS
AACATTGAGAAAGTAAGCTT+TGG 0.387986 7.4:-38024347 MS.gene055072:CDS
TTCAAGTGCAAGAAGATTCA+TGG 0.391251 7.4:+38023944 None:intergenic
TTCTGATTTAAAAGATAAGC+TGG 0.410605 7.4:-38023295 MS.gene055072:CDS
TCCTTACATTTCCCTTGGGC+GGG 0.415979 7.4:-38023413 MS.gene055072:CDS
TAGTTTCCTTACATTTCCCT+TGG 0.418561 7.4:-38023418 MS.gene055072:CDS
TTTGTGTCACTAGACATAAT+AGG 0.420484 7.4:-38023194 MS.gene055072:CDS
ATTGGTTACGGAGTTTGAAT+TGG 0.424103 7.4:+38023253 None:intergenic
TCAACCTTGACTTTAAGAAA+TGG 0.427676 7.4:+38022723 None:intergenic
TCTGCTCTGACTAATGGTCT+TGG 0.434350 7.4:-38022747 MS.gene055072:CDS
CAAAGGTGTGTTTGAGACTA+AGG 0.434805 7.4:+38023629 None:intergenic
TCAAGGAGGCAAAGATTTCA+TGG 0.435034 7.4:-38024435 MS.gene055072:CDS
TTGGAGCCACAGTCATCAAC+TGG 0.436173 7.4:-38023087 MS.gene055072:CDS
TGAGACACTTCTCAAAGTTA+AGG 0.436596 7.4:-38022703 MS.gene055072:CDS
TAAGGATGAGCTCAAAGTTA+AGG 0.447408 7.4:-38022685 MS.gene055072:CDS
CTTTCCTCCAAATCGGAAGA+AGG 0.453157 7.4:+38022934 None:intergenic
GATCATTCTTTCCTCCAAAT+CGG 0.457025 7.4:+38022927 None:intergenic
AAGCCTAGCAATTGTAGCTA+AGG 0.458301 7.4:+38024385 None:intergenic
GATTCCTTCTTCCGATTTGG+AGG 0.458978 7.4:-38022938 MS.gene055072:CDS
TCTTCAACCAAAGAATTCAA+TGG 0.459163 7.4:-38024246 MS.gene055072:CDS
TTTCATCAAAGGGCAACAAT+TGG 0.465774 7.4:+38023235 None:intergenic
AGACATAATAGGAGAAGAAC+TGG 0.475136 7.4:-38023183 MS.gene055072:CDS
ACACAAAATATATTAGGATC+AGG 0.478516 7.4:+38023210 None:intergenic
AAATCCAATACAACAGGGTT+GGG 0.479589 7.4:+38023561 None:intergenic
GAGGAAAGAATGATCACCAT+TGG 0.483156 7.4:-38022919 MS.gene055072:CDS
AGTTTCCTTACATTTCCCTT+GGG 0.483205 7.4:-38023417 MS.gene055072:CDS
GGATCAGGCATTTCATCAAA+GGG 0.495430 7.4:+38023225 None:intergenic
AGGATCAGGCATTTCATCAA+AGG 0.497099 7.4:+38023224 None:intergenic
GGTTACGGAGTTTGAATTGG+TGG 0.510699 7.4:+38023256 None:intergenic
GTAACAAGAGTATCAGTTTG+AGG 0.511310 7.4:+38022653 None:intergenic
TTCCTTACATTTCCCTTGGG+CGG 0.512120 7.4:-38023414 MS.gene055072:CDS
AAAATCCAATACAACAGGGT+TGG 0.520441 7.4:+38023560 None:intergenic
GGGGTAGAACACATGTTAAA+GGG 0.523293 7.4:-38023393 MS.gene055072:CDS
TCAAATTTAAAATGCAGTTG+CGG 0.524990 7.4:-38024107 MS.gene055072:CDS
TGGTCCATTTCTTAAAGTCA+AGG 0.525498 7.4:-38022727 MS.gene055072:CDS
CAAAGGGCAACAATTGGTTA+CGG 0.525929 7.4:+38023241 None:intergenic
TCAAGTGCAAGAAGATTCAT+GGG 0.529660 7.4:+38023945 None:intergenic
TTCCCTTAGCTACAATTGCT+AGG 0.535607 7.4:-38024388 MS.gene055072:CDS
TCAGTCACCATGTAAAATGC+TGG 0.536470 7.4:+38023021 None:intergenic
TTACATGGTGACTGATGACT+TGG 0.536780 7.4:-38023013 MS.gene055072:CDS
CAGAGCAGAAGACGACATCA+AGG 0.539091 7.4:+38022761 None:intergenic
GTTACGGAGTTTGAATTGGT+GGG 0.541425 7.4:+38023257 None:intergenic
CCTTACATTTCCCTTGGGCG+GGG 0.543355 7.4:-38023412 MS.gene055072:CDS
TATGGTGATTGTGGTGGAAG+AGG 0.543911 7.4:-38023057 MS.gene055072:CDS
TGCTTACAAGTTTATGAGCG+TGG 0.546472 7.4:-38023913 MS.gene055072:CDS
CCAGAGCAGTTAAATATGCA+TGG 0.547050 7.4:+38023157 None:intergenic
AAAGCATAACATCGATGTCT+CGG 0.547614 7.4:-38024204 MS.gene055072:CDS
AGTGGTCAACAAGCCACCAC+TGG 0.550325 7.4:+38024133 None:intergenic
CCCCGCCCAAGGGAAATGTA+AGG 0.553475 7.4:+38023412 None:intergenic
TCATCAACTGGCGAAGCGTA+TGG 0.554710 7.4:-38023075 MS.gene055072:CDS
AGCCTAGCAATTGTAGCTAA+GGG 0.571248 7.4:+38024386 None:intergenic
TGCATATTTAACTGCTCTGG+AGG 0.595252 7.4:-38023154 MS.gene055072:CDS
CATGTGTTCTACCCCGCCCA+AGG 0.595789 7.4:+38023401 None:intergenic
ATGTGTTCTACCCCGCCCAA+GGG 0.607536 7.4:+38023402 None:intergenic
GGCGAAGCGTATGGTGATTG+TGG 0.624211 7.4:-38023066 MS.gene055072:CDS
AATACTGTCAATGAAAACGA+AGG 0.627418 7.4:-38023531 MS.gene055072:CDS
AATTCTCAGTGAAATTTGTG+TGG 0.632684 7.4:+38024493 None:intergenic
TAGCACGCTGTATGAAAGTG+TGG 0.633787 7.4:-38024318 MS.gene055072:CDS
ATACTGTCAATGAAAACGAA+GGG 0.638947 7.4:-38023530 MS.gene055072:CDS
ATGTTAAAGGGAAACTCATG+TGG 0.642490 7.4:-38023381 MS.gene055072:CDS
TGTAGTCGTCAATCCAGTGG+TGG 0.654643 7.4:-38024146 MS.gene055072:CDS
ATGACAGAAACAGATGTACA+TGG 0.658175 7.4:+38022982 None:intergenic
GATTGTAGTCGTCAATCCAG+TGG 0.678128 7.4:-38024149 MS.gene055072:CDS
GCATAACATCGATGTCTCGG+AGG 0.684769 7.4:-38024201 MS.gene055072:CDS
TGTCAAAATCCAATACAACA+GGG 0.693439 7.4:+38023556 None:intergenic
GCTTCGCCAGTTGATGACTG+TGG 0.702717 7.4:+38023081 None:intergenic
GAAGCGTATGGTGATTGTGG+TGG 0.710145 7.4:-38023063 MS.gene055072:CDS
CGTGGATGTCACTTTCAACG+AGG 0.734846 7.4:-38023895 MS.gene055072:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAAATATTTATAACA+TGG + chr7.4:38023317-38023336 None:intergenic 10.0%
!!! ATTAAATACTAGTACATTTT+TGG - chr7.4:38023393-38023412 MS.gene055072:CDS 15.0%
!! AGGGAAGAAAATAAAAATAA+AGG - chr7.4:38023651-38023670 MS.gene055072:CDS 20.0%
!!! AATAAAGTTTTATTTGCTCA+AGG - chr7.4:38022710-38022729 MS.gene055072:CDS 20.0%
!!! GAAGAAAAAATTGATAATGA+AGG - chr7.4:38023112-38023131 MS.gene055072:CDS 20.0%
!!! TATTTGTATTTTGTAGATAC+TGG - chr7.4:38023495-38023514 MS.gene055072:CDS 20.0%
!!! TGCAAATAAAATTTTGTTGT+TGG + chr7.4:38023692-38023711 None:intergenic 20.0%
! AACTCTTTCGAAGTAATATA+TGG + chr7.4:38024036-38024055 None:intergenic 25.0%
! ACACAAAATATATTAGGATC+AGG + chr7.4:38023955-38023974 None:intergenic 25.0%
! CTAGTGACACAAAATATATT+AGG + chr7.4:38023961-38023980 None:intergenic 25.0%
! TATTCTTCCATTGAATTCTT+TGG + chr7.4:38022926-38022945 None:intergenic 25.0%
! TTCTGATTTAAAAGATAAGC+TGG - chr7.4:38023867-38023886 MS.gene055072:intron 25.0%
!! AATGGTTCATTTTATTCCTT+TGG - chr7.4:38024341-38024360 MS.gene055072:CDS 25.0%
!! GCATTTTAAATTTGAGAAAG+TGG + chr7.4:38023050-38023069 None:intergenic 25.0%
!! TCAAATTTAAAATGCAGTTG+CGG - chr7.4:38023055-38023074 MS.gene055072:CDS 25.0%
!!! ATTTCATTTTTGAGTAAGCT+GGG - chr7.4:38024201-38024220 MS.gene055072:CDS 25.0%
!!! CGATGTTATGCTTTAATTTT+TGG + chr7.4:38022952-38022971 None:intergenic 25.0%
!!! CTTTGGATTTTTTTTTTGCA+GGG - chr7.4:38024358-38024377 MS.gene055072:CDS 25.0%
AACATTGAGAAAGTAAGCTT+TGG - chr7.4:38022815-38022834 MS.gene055072:intron 30.0%
AACTTCATTACACAACACAA+TGG - chr7.4:38024323-38024342 MS.gene055072:CDS 30.0%
AATACTGTCAATGAAAACGA+AGG - chr7.4:38023631-38023650 MS.gene055072:CDS 30.0%
AATTCTCAGTGAAATTTGTG+TGG + chr7.4:38022672-38022691 None:intergenic 30.0%
AGCAAAAAAATGTCTGTCAA+AGG + chr7.4:38023553-38023572 None:intergenic 30.0%
ATACTGTCAATGAAAACGAA+GGG - chr7.4:38023632-38023651 MS.gene055072:CDS 30.0%
CCTGCAAAAAAAAAATCCAA+AGG + chr7.4:38024360-38024379 None:intergenic 30.0%
CTTACTTTCTCAATGTTAGA+TGG + chr7.4:38022812-38022831 None:intergenic 30.0%
TCTTCAACCAAAGAATTCAA+TGG - chr7.4:38022916-38022935 MS.gene055072:CDS 30.0%
TGTCAAAATCCAATACAACA+GGG + chr7.4:38023609-38023628 None:intergenic 30.0%
TTGTCAAAATCCAATACAAC+AGG + chr7.4:38023610-38023629 None:intergenic 30.0%
! AAATTGTTGTTCTTCGAGAT+TGG + chr7.4:38022870-38022889 None:intergenic 30.0%
! AGTTTTTAATATGCGACGAT+TGG - chr7.4:38022990-38023009 MS.gene055072:CDS 30.0%
! ATCTCGAAGAACAACAATTT+TGG - chr7.4:38022870-38022889 MS.gene055072:intron 30.0%
! ATGTGTTCCATTGAAGTTTT+TGG - chr7.4:38024056-38024075 MS.gene055072:CDS 30.0%
! CAAATTTAAAATGCAGTTGC+GGG - chr7.4:38023056-38023075 MS.gene055072:CDS 30.0%
! GTTTTTAATATGCGACGATT+GGG - chr7.4:38022991-38023010 MS.gene055072:CDS 30.0%
! TCAACCTTGACTTTAAGAAA+TGG + chr7.4:38024442-38024461 None:intergenic 30.0%
! TGCAGCAACTTTTTGTATTT+CGG - chr7.4:38023147-38023166 MS.gene055072:CDS 30.0%
! TTTGTGTCACTAGACATAAT+AGG - chr7.4:38023968-38023987 MS.gene055072:CDS 30.0%
!! ATACAAGAGCATTCTTGAAT+TGG - chr7.4:38023822-38023841 MS.gene055072:intron 30.0%
!!! AAAGTTTTATTTGCTCAAGG+AGG - chr7.4:38022713-38022732 MS.gene055072:CDS 30.0%
!!! ATTTTTTTTTTGCAGGGTCT+TGG - chr7.4:38024364-38024383 MS.gene055072:CDS 30.0%
!!! CATTTCATTTTTGAGTAAGC+TGG - chr7.4:38024200-38024219 MS.gene055072:CDS 30.0%
!!! CCTTTGGATTTTTTTTTTGC+AGG - chr7.4:38024357-38024376 MS.gene055072:CDS 30.0%
!!! CTTTACCTCTTTTTTTCCAA+TGG + chr7.4:38024262-38024281 None:intergenic 30.0%
!!! TTTCATTTTTGAGTAAGCTG+GGG - chr7.4:38024202-38024221 MS.gene055072:CDS 30.0%
AAAATCCAATACAACAGGGT+TGG + chr7.4:38023605-38023624 None:intergenic 35.0%
AAAGCATAACATCGATGTCT+CGG - chr7.4:38022958-38022977 MS.gene055072:CDS 35.0%
AAATCCAATACAACAGGGTT+GGG + chr7.4:38023604-38023623 None:intergenic 35.0%
AGACATAATAGGAGAAGAAC+TGG - chr7.4:38023979-38023998 MS.gene055072:CDS 35.0%
AGTTTCCTTACATTTCCCTT+GGG - chr7.4:38023745-38023764 MS.gene055072:intron 35.0%
ATGACAGAAACAGATGTACA+TGG + chr7.4:38024183-38024202 None:intergenic 35.0%
ATGTTAAAGGGAAACTCATG+TGG - chr7.4:38023781-38023800 MS.gene055072:intron 35.0%
ATTGGTTACGGAGTTTGAAT+TGG + chr7.4:38023912-38023931 None:intergenic 35.0%
GATCACCATTGGAAAAAAAG+AGG - chr7.4:38024254-38024273 MS.gene055072:CDS 35.0%
GATCATTCTTTCCTCCAAAT+CGG + chr7.4:38024238-38024257 None:intergenic 35.0%
TAAGGATGAGCTCAAAGTTA+AGG - chr7.4:38024477-38024496 MS.gene055072:CDS 35.0%
TAGTTTCCTTACATTTCCCT+TGG - chr7.4:38023744-38023763 MS.gene055072:intron 35.0%
TCAAGTGCAAGAAGATTCAT+GGG + chr7.4:38023220-38023239 None:intergenic 35.0%
TGAGACACTTCTCAAAGTTA+AGG - chr7.4:38024459-38024478 MS.gene055072:CDS 35.0%
TGGTCCATTTCTTAAAGTCA+AGG - chr7.4:38024435-38024454 MS.gene055072:CDS 35.0%
TTCAAGTGCAAGAAGATTCA+TGG + chr7.4:38023221-38023240 None:intergenic 35.0%
TTTCATCAAAGGGCAACAAT+TGG + chr7.4:38023930-38023949 None:intergenic 35.0%
! GACAAGATCGTTTCTTTTGT+TGG - chr7.4:38023354-38023373 MS.gene055072:CDS 35.0%
AAGCCTAGCAATTGTAGCTA+AGG + chr7.4:38022780-38022799 None:intergenic 40.0%
AGCCTAGCAATTGTAGCTAA+GGG + chr7.4:38022779-38022798 None:intergenic 40.0%
AGGATCAGGCATTTCATCAA+AGG + chr7.4:38023941-38023960 None:intergenic 40.0%
CAAAGGGCAACAATTGGTTA+CGG + chr7.4:38023924-38023943 None:intergenic 40.0%
CCAGAGCAGTTAAATATGCA+TGG + chr7.4:38024008-38024027 None:intergenic 40.0%
CCATGCATATTTAACTGCTC+TGG - chr7.4:38024005-38024024 MS.gene055072:CDS 40.0%
GAGGAAAGAATGATCACCAT+TGG - chr7.4:38024243-38024262 MS.gene055072:CDS 40.0%
GGATCAGGCATTTCATCAAA+GGG + chr7.4:38023940-38023959 None:intergenic 40.0%
GGGGTAGAACACATGTTAAA+GGG - chr7.4:38023769-38023788 MS.gene055072:intron 40.0%
GTTACGGAGTTTGAATTGGT+GGG + chr7.4:38023908-38023927 None:intergenic 40.0%
TCAAGGAGGCAAAGATTTCA+TGG - chr7.4:38022727-38022746 MS.gene055072:CDS 40.0%
TCAGTCACCATGTAAAATGC+TGG + chr7.4:38024144-38024163 None:intergenic 40.0%
TGCATATTTAACTGCTCTGG+AGG - chr7.4:38024008-38024027 MS.gene055072:CDS 40.0%
TGCTTACAAGTTTATGAGCG+TGG - chr7.4:38023249-38023268 MS.gene055072:CDS 40.0%
TGTGGCTCCAAAAACTTCAA+TGG + chr7.4:38024066-38024085 None:intergenic 40.0%
TTACATGGTGACTGATGACT+TGG - chr7.4:38024149-38024168 MS.gene055072:CDS 40.0%
TTCCCTTAGCTACAATTGCT+AGG - chr7.4:38022774-38022793 MS.gene055072:CDS 40.0%
! CAAAGGTGTGTTTGAGACTA+AGG + chr7.4:38023536-38023555 None:intergenic 40.0%
! GAAGAGTCCAGCATTTTACA+TGG - chr7.4:38024134-38024153 MS.gene055072:CDS 40.0%
! TTGAATTGGTGGGCAAGTTT+AGG + chr7.4:38023898-38023917 None:intergenic 40.0%
!!! AGAAGCATTTTCTTACACGC+AGG + chr7.4:38022899-38022918 None:intergenic 40.0%
CGGGGTAGAACACATGTTAA+AGG - chr7.4:38023768-38023787 MS.gene055072:intron 45.0%
CTTTCCTCCAAATCGGAAGA+AGG + chr7.4:38024231-38024250 None:intergenic 45.0%
GATTGTAGTCGTCAATCCAG+TGG - chr7.4:38023013-38023032 MS.gene055072:CDS 45.0%
GGTTACGGAGTTTGAATTGG+TGG + chr7.4:38023909-38023928 None:intergenic 45.0%
TAGCACGCTGTATGAAAGTG+TGG - chr7.4:38022844-38022863 MS.gene055072:intron 45.0%
TCGTCTTCTGCTCTGACTAA+TGG - chr7.4:38024409-38024428 MS.gene055072:CDS 45.0%
TCTGCTCTGACTAATGGTCT+TGG - chr7.4:38024415-38024434 MS.gene055072:CDS 45.0%
TTCCTTACATTTCCCTTGGG+CGG - chr7.4:38023748-38023767 MS.gene055072:intron 45.0%
! TATGGTGATTGTGGTGGAAG+AGG - chr7.4:38024105-38024124 MS.gene055072:CDS 45.0%
!! GATTCCTTCTTCCGATTTGG+AGG - chr7.4:38024224-38024243 MS.gene055072:CDS 45.0%
ACTGCCCAACCCTGTTGTAT+TGG - chr7.4:38023597-38023616 MS.gene055072:CDS 50.0%
CAGAGCAGAAGACGACATCA+AGG + chr7.4:38024404-38024423 None:intergenic 50.0%
GAAGCGTATGGTGATTGTGG+TGG - chr7.4:38024099-38024118 MS.gene055072:CDS 50.0%
GCATAACATCGATGTCTCGG+AGG - chr7.4:38022961-38022980 MS.gene055072:CDS 50.0%
GGGGATTCCTTCTTCCGATT+TGG - chr7.4:38024221-38024240 MS.gene055072:CDS 50.0%
TCATCAACTGGCGAAGCGTA+TGG - chr7.4:38024087-38024106 MS.gene055072:CDS 50.0%
TCCTTACATTTCCCTTGGGC+GGG - chr7.4:38023749-38023768 MS.gene055072:intron 50.0%
TGTAGTCGTCAATCCAGTGG+TGG - chr7.4:38023016-38023035 MS.gene055072:CDS 50.0%
TTGGAGCCACAGTCATCAAC+TGG - chr7.4:38024075-38024094 MS.gene055072:CDS 50.0%
!! CGTGGATGTCACTTTCAACG+AGG - chr7.4:38023267-38023286 MS.gene055072:CDS 50.0%
AGTGGTCAACAAGCCACCAC+TGG + chr7.4:38023032-38023051 None:intergenic 55.0%
ATGTGTTCTACCCCGCCCAA+GGG + chr7.4:38023763-38023782 None:intergenic 55.0%
CCTTACATTTCCCTTGGGCG+GGG - chr7.4:38023750-38023769 MS.gene055072:intron 55.0%
GGCGAAGCGTATGGTGATTG+TGG - chr7.4:38024096-38024115 MS.gene055072:CDS 55.0%
!! GCTTCGCCAGTTGATGACTG+TGG + chr7.4:38024084-38024103 None:intergenic 55.0%
CATGTGTTCTACCCCGCCCA+AGG + chr7.4:38023764-38023783 None:intergenic 60.0%
CCCCGCCCAAGGGAAATGTA+AGG + chr7.4:38023753-38023772 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38022665 38024519 38022665 ID=MS.gene055072
chr7.4 mRNA 38022665 38024519 38022665 ID=MS.gene055072.t1;Parent=MS.gene055072
chr7.4 exon 38023896 38024519 38023896 ID=MS.gene055072.t1.exon1;Parent=MS.gene055072.t1
chr7.4 CDS 38023896 38024519 38023896 ID=cds.MS.gene055072.t1;Parent=MS.gene055072.t1
chr7.4 exon 38022909 38023673 38022909 ID=MS.gene055072.t1.exon2;Parent=MS.gene055072.t1
chr7.4 CDS 38022909 38023673 38022909 ID=cds.MS.gene055072.t1;Parent=MS.gene055072.t1
chr7.4 exon 38022665 38022805 38022665 ID=MS.gene055072.t1.exon3;Parent=MS.gene055072.t1
chr7.4 CDS 38022665 38022805 38022665 ID=cds.MS.gene055072.t1;Parent=MS.gene055072.t1
Gene Sequence

>MS.gene055072

ATGGCCACACAAATTTCACTGAGAATTCTGATCGATGAAGAGAAAAATAAAGTTTTATTTGCTCAAGGAGGCAAAGATTTCATGGATATCATGCTTAGTTTCTTAACATTTCCCTTAGCTACAATTGCTAGGCTTGTTAACACGCCATCTAACATTGAGAAAGTAAGCTTTGGAAGCATTAGCACGCTGTATGAAAGTGTGGCCAATCTCGAAGAACAACAATTTTGGACACCTGCGTGTAAGAAAATGCTTCTTCAACCAAAGAATTCAATGGAAGAATATTGCCAAAAATTAAAGCATAACATCGATGTCTCGGAGGAAACTAAGTTTTTAATATGCGACGATTGGGATTGTAGTCGTCAATCCAGTGGTGGCTTGTTGACCACTTTCTCAAATTTAAAATGCAGTTGCGGGAGTTTTATGTCTCAATCGATATATCTTGCTGATGAAGAAAAAATTGATAATGAAGGATTTGTTGCAGATGCAGCAACTTTTTGTATTTCGGATGATTTAAGTGTGAAGTCTGATAGTTTTCAAAATTCTATTTGTGAACCCATGAATCTTCTTGCACTTGAAAACTTCAGTGCTTACAAGTTTATGAGCGTGGATGTCACTTTCAACGAGGTATCTTTTTCTCTTACGCAAAATTCCATGTTATAAATATTTTCTTTAGTGAGTTTCTTGCTTTTGACAAGATCGTTTCTTTTGTTGGATCTTAATATTTTGCAATTAAATACTAGTACATTTTTGGAATTATTTATTAAAATAATGTGAATACTAGAATTTTATTAAAAAAATTGCTTCGTTTTAATGTAGTGCACTGCATTGTTTATTTGTATTTTGTAGATACTGGATTTGTTGAAGTGCTCCTTAGTCTCAAACACACCTTTGACAGACATTTTTTTGCTGAAGAAACAGAATTTTGAGAATTCACTGCCCAACCCTGTTGTATTGGATTTTGACAATAATACTGTCAATGAAAACGAAGGGAAGAAAATAAAAATAAAGGTAATGCTGCAAAAATCCAACAACAAAATTTTATTTGCATTAGCTGATGCTGATTTTGCAGACTTCATTCTTAGTTTCCTTACATTTCCCTTGGGCGGGGTAGAACACATGTTAAAGGGAAACTCATGTGGATCAAGCATAGACAATTTATACAAGAGCATTCTTGAATTGGACAGTGACACATACTTGAAATCTTCTGATTTAAAAGATAAGCTGGTTAAACCTAAACTTGCCCACCAATTCAAACTCCGTAACCAATTGTTGCCCTTTGATGAAATGCCTGATCCTAATATATTTTGTGTCACTAGACATAATAGGAGAAGAACTGGTTTCCATGCATATTTAACTGCTCTGGAGGATCCATATATTACTTCGAAAGAGTTATGTGTTCCATTGAAGTTTTTGGAGCCACAGTCATCAACTGGCGAAGCGTATGGTGATTGTGGTGGAAGAGGATTCATGAAGAGTCCAGCATTTTACATGGTGACTGATGACTTGGTTGTCACGCCATGTACATCTGTTTCTGTCATTTCATTTTTGAGTAAGCTGGGGATTCCTTCTTCCGATTTGGAGGAAAGAATGATCACCATTGGAAAAAAAGAGGTAAAGTAAAGCATGTTACTTTCACATTAGTATTCATTGTTTCAACAAACTTCATTACACAACACAATGGTTCATTTTATTCCTTTGGATTTTTTTTTTGCAGGGTCTTGGCATTTTGAAAGCTTCCTTGATGTCGTCTTCTGCTCTGACTAATGGTCTTGGTCCATTTCTTAAAGTCAAGGTTGAGACACTTCTCAAAGTTAAGGATGAGCTCAAAGTTAAGGATGAGAATACCTCAAACTGA
Protein sequence

>MS.gene055072.t1

MATQISLRILIDEEKNKVLFAQGGKDFMDIMLSFLTFPLATIARLVNTPSNIEKVSFGSISTLYESVANLEEQQFWTPACKKMLLQPKNSMEEYCQKLKHNIDVSEETKFLICDDWDCSRQSSGGLLTTFSNLKCSCGSFMSQSIYLADEEKIDNEGFVADAATFCISDDLSVKSDSFQNSICEPMNLLALENFSAYKFMSVDVTFNEILDLLKCSLVSNTPLTDIFLLKKQNFENSLPNPVVLDFDNNTVNENEGKKIKIKVMLQKSNNKILFALADADFADFILSFLTFPLGGVEHMLKGNSCGSSIDNLYKSILELDSDTYLKSSDLKDKLVKPKLAHQFKLRNQLLPFDEMPDPNIFCVTRHNRRRTGFHAYLTALEDPYITSKELCVPLKFLEPQSSTGEAYGDCGGRGFMKSPAFYMVTDDLVVTPCTSVSVISFLSKLGIPSSDLEERMITIGKKEGLGILKASLMSSSALTNGLGPFLKVKVETLLKVKDELKVKDENTSN