AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70039

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70039.t1 MTR_4g017410 66.603 521 133 7 8 505 4 506 0.0 647
MS.gene70039.t1 MTR_4g017440 64.881 504 159 8 4 489 5 508 0.0 592
MS.gene70039.t1 MTR_4g017830 60.190 525 174 12 3 505 2 513 0.0 568
MS.gene70039.t1 MTR_4g017610 60.816 490 170 6 1 482 1 476 0.0 564
MS.gene70039.t1 MTR_4g017550 63.080 474 149 10 27 481 3 469 0.0 548
MS.gene70039.t1 MTR_4g017470 60.962 520 150 13 1 500 1 487 0.0 534
MS.gene70039.t1 MTR_4g019340 57.895 494 151 10 12 475 37 503 6.34e-177 507
MS.gene70039.t1 MTR_4g019310 37.218 532 266 17 1 499 1 497 1.01e-95 299
MS.gene70039.t1 MTR_7g066350 34.800 500 252 12 7 485 3 449 1.57e-76 248
MS.gene70039.t1 MTR_7g066340 32.129 498 269 10 3 481 2 449 1.81e-70 233
MS.gene70039.t1 MTR_7g058710 32.024 509 282 15 1 481 1 473 3.73e-69 229
MS.gene70039.t1 MTR_7g066570 35.363 509 268 19 1 481 1 476 2.25e-68 229
MS.gene70039.t1 MTR_7g066260 34.068 499 258 14 6 481 8 458 1.03e-67 226
MS.gene70039.t1 MTR_7g012680 33.855 511 262 17 2 497 3 452 1.60e-63 214
MS.gene70039.t1 MTR_7g066430 32.692 520 289 17 14 498 5 498 1.65e-63 215
MS.gene70039.t1 MTR_7g066430 24.797 246 154 4 7 236 251 481 9.29e-14 73.9
MS.gene70039.t1 MTR_1g041315 32.998 497 242 15 9 469 10 451 1.30e-62 212
MS.gene70039.t1 MTR_7g066400 31.936 501 252 14 9 488 8 440 8.31e-62 209
MS.gene70039.t1 MTR_7g063660 32.186 494 275 16 14 482 10 468 5.30e-60 205
MS.gene70039.t1 MTR_7g066580 32.577 485 245 13 19 473 1 433 3.14e-58 199
MS.gene70039.t1 MTR_7g063900 31.667 480 272 14 12 463 9 460 5.15e-58 200
MS.gene70039.t1 MTR_7g066410 32.563 519 278 17 14 481 11 508 8.12e-58 200
MS.gene70039.t1 MTR_7g066360 33.878 490 259 13 6 481 7 445 7.14e-56 194
MS.gene70039.t1 MTR_7g066290 37.685 337 179 8 6 327 8 328 3.58e-53 186
MS.gene70039.t1 MTR_7g063880 30.528 511 274 15 1 482 1 459 1.94e-52 184
MS.gene70039.t1 MTR_7g063840 29.518 498 294 15 6 482 3 464 1.79e-51 182
MS.gene70039.t1 MTR_7g062280 31.120 527 273 20 1 482 1 482 2.76e-51 182
MS.gene70039.t1 MTR_7g062300 30.648 509 287 17 1 482 1 470 3.16e-51 181
MS.gene70039.t1 MTR_7g066310 30.864 486 204 15 14 481 8 379 1.45e-49 175
MS.gene70039.t1 MTR_7g063890 30.832 493 280 15 2 462 12 475 6.12e-49 176
MS.gene70039.t1 MTR_7g066480 30.625 480 244 13 14 482 17 418 1.75e-48 173
MS.gene70039.t1 MTR_7g063830 30.478 502 262 14 1 482 1 435 1.38e-46 168
MS.gene70039.t1 MTR_7g063920 29.376 497 266 13 1 482 1 427 6.31e-46 166
MS.gene70039.t1 MTR_7g063820 31.115 511 285 16 1 481 1 474 8.01e-46 167
MS.gene70039.t1 MTR_2g029400 29.263 475 245 12 9 473 10 403 1.25e-43 159
MS.gene70039.t1 MTR_7g058700 28.395 486 220 16 25 481 531 917 1.23e-42 162
MS.gene70039.t1 MTR_4g019240 60.800 125 45 2 1 125 1 121 1.49e-42 150
MS.gene70039.t1 MTR_4g019240 65.079 63 14 2 443 505 112 166 1.94e-13 69.3
MS.gene70039.t1 MTR_7g066490 29.583 480 235 14 14 482 17 404 5.02e-42 155
MS.gene70039.t1 MTR_7g063670 28.834 489 278 15 10 481 12 447 1.13e-38 147
MS.gene70039.t1 MTR_3g007740 28.252 492 278 14 7 481 5 438 3.56e-36 139
MS.gene70039.t1 MTR_3g065200 26.121 513 261 14 14 489 4 435 6.64e-35 136
MS.gene70039.t1 MTR_7g066280 30.918 414 224 13 102 481 1 386 2.05e-34 134
MS.gene70039.t1 MTR_1g014060 33.475 236 128 10 22 243 9 229 2.57e-26 110
MS.gene70039.t1 MTR_7g066680 32.061 262 152 6 217 464 37 286 2.95e-25 107
MS.gene70039.t1 MTR_7g062270 36.022 186 98 8 8 185 5 177 7.58e-20 91.7
MS.gene70039.t1 MTR_7g100420 29.193 322 187 12 174 481 99 393 7.53e-17 82.8
MS.gene70039.t1 MTR_7g100420 46.032 63 34 0 13 75 39 101 1.72e-11 66.2
MS.gene70039.t1 MTR_1g115440 26.939 245 138 8 14 237 12 236 1.67e-16 79.3
MS.gene70039.t1 MTR_1g115440 28.326 233 140 6 265 479 10 233 9.81e-15 74.3
MS.gene70039.t1 MTR_8g445860 29.614 233 134 7 265 479 12 232 2.60e-16 79.0
MS.gene70039.t1 MTR_8g445860 26.667 255 149 6 1 237 1 235 6.76e-16 77.8
MS.gene70039.t1 MTR_0150s0010 27.642 246 133 5 261 479 5 232 1.85e-15 76.3
MS.gene70039.t1 MTR_0150s0010 26.829 246 137 6 14 237 11 235 2.65e-14 72.8
MS.gene70039.t1 MTR_6g006800 70.833 48 12 1 1 48 1 46 2.11e-14 68.6
MS.gene70039.t1 MTR_1g115455 26.556 241 140 7 14 237 10 230 6.45e-13 68.9
MS.gene70039.t1 MTR_1g115455 27.426 237 147 8 258 479 1 227 7.29e-12 65.9
MS.gene70039.t1 MTR_1g115450 42.500 80 38 1 265 336 6 85 5.55e-12 63.9
MS.gene70039.t1 MTR_8g445920 41.791 67 39 0 261 327 5 71 1.03e-11 62.0
MS.gene70039.t1 MTR_8g044890 41.791 67 39 0 261 327 5 71 1.03e-11 62.0
MS.gene70039.t1 MTR_0150s0030 36.364 88 47 1 261 339 3 90 1.88e-11 63.9
MS.gene70039.t1 MTR_8g044880 37.079 89 47 1 261 340 3 91 8.47e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70039.t1 AT5G01130 31.837 490 268 16 6 481 3 440 1.20e-59 203
MS.gene70039.t1 AT5G01150 29.608 510 295 11 10 488 6 482 1.63e-54 191
MS.gene70039.t1 AT5G01120 29.175 497 310 14 10 481 6 485 8.33e-52 184
MS.gene70039.t1 AT3G09110 34.535 333 183 10 10 327 6 318 5.26e-49 172
MS.gene70039.t1 AT5G01140 30.237 506 272 16 16 499 12 458 7.01e-48 172
MS.gene70039.t1 AT3G09140 27.903 534 293 17 7 488 3 496 4.59e-47 171
MS.gene70039.t1 AT3G09140 26.639 244 155 6 258 478 1 243 5.20e-12 68.6
MS.gene70039.t1 AT5G43240 28.210 514 289 15 14 481 10 489 4.98e-47 171
MS.gene70039.t1 AT5G43240 28.210 514 289 15 14 481 10 489 4.98e-47 171
MS.gene70039.t1 AT5G43240 28.210 514 289 15 14 481 10 489 4.98e-47 171
MS.gene70039.t1 AT3G09140 26.512 562 293 18 7 488 3 524 4.84e-42 157
MS.gene70039.t1 AT3G09120 31.804 327 191 10 10 320 3 313 5.35e-41 150
MS.gene70039.t1 AT5G37320 27.539 512 308 18 8 488 3 482 6.13e-38 145
MS.gene70039.t1 AT5G43240 26.149 348 205 8 163 481 21 345 7.37e-22 97.4

Find 109 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAGCCAGCTTATTATTT+TGG 0.124078 4.2:+84479915 MS.gene70039:CDS
TCCTCCCTTTGTATAATAAT+TGG 0.173244 4.2:-84479976 None:intergenic
TGGCATACAGCCATGGAATT+TGG 0.179175 4.2:+84479132 MS.gene70039:CDS
GTTTGTCGACTAACACTTTC+AGG 0.206574 4.2:-84478718 None:intergenic
AGGTGGGTTGTCTTTGTTCT+TGG 0.216712 4.2:-84479574 None:intergenic
CGGGTCCGTTGTAAAGCTTT+TGG 0.241869 4.2:+84479755 MS.gene70039:CDS
CACCAATAACAGAAGTAAAA+TGG 0.276087 4.2:+84479632 MS.gene70039:CDS
GTCAAATTTGATTCTTGTTT+AGG 0.299305 4.2:-84480422 None:intergenic
AGTAAGTCACATGGATTTCT+TGG 0.302049 4.2:-84478989 None:intergenic
TAGTGTGGTTGAAACGTTTC+TGG 0.307197 4.2:+84479180 MS.gene70039:CDS
TTGCAGCTGTTGAAGGAATT+CGG 0.312659 4.2:+84479247 MS.gene70039:CDS
TTGATCATTGTTGCAGTTGA+TGG 0.313976 4.2:-84478843 None:intergenic
CCTGGCTAGTGGACTGGGTT+TGG 0.316532 4.2:+84480364 MS.gene70039:CDS
AAGTTACGTGAATCAATTAT+AGG 0.328775 4.2:+84480008 MS.gene70039:CDS
AGCTTTCTTACCATGCCATT+CGG 0.346241 4.2:+84479735 MS.gene70039:CDS
GTGTAGGCTTTGAGCTTCCT+TGG 0.359925 4.2:+84480317 MS.gene70039:intron
ACCTCAATTCAGACGATGTT+TGG 0.367095 4.2:+84478933 MS.gene70039:CDS
TGCAGTTGATGGTGGCTAAA+AGG 0.368848 4.2:-84478832 None:intergenic
GCCTCTCACAAATACAATCT+TGG 0.374861 4.2:+84479542 MS.gene70039:CDS
ATTCTGAGGGTCAGTTGAAC+AGG 0.381535 4.2:+84479155 MS.gene70039:CDS
TGCAGCTGTTGAAGGAATTC+GGG 0.386713 4.2:+84479248 MS.gene70039:CDS
TCTTGATCCCTCTTTCGCTT+TGG 0.389102 4.2:-84479948 None:intergenic
CAGAAGTAAAATGGATGTTA+AGG 0.394664 4.2:+84479641 MS.gene70039:CDS
GCTTTCTTACCATGCCATTC+GGG 0.404087 4.2:+84479736 MS.gene70039:CDS
TCTAGTGCCATCAAGGATTT+CGG 0.406512 4.2:-84480032 None:intergenic
AAATTCCATGGCTGTATGCC+AGG 0.407093 4.2:-84479130 None:intergenic
GAGAGGCTCGTTAGTGGTTA+AGG 0.413109 4.2:-84479526 None:intergenic
CATCGTCTGAATTGAGGTCT+TGG 0.415737 4.2:-84478928 None:intergenic
GACATACTTGCAGCTGTTGA+AGG 0.421440 4.2:+84479240 MS.gene70039:CDS
ATTTACCCTGGCTAGTGGAC+TGG 0.422952 4.2:+84480358 MS.gene70039:CDS
GGAATGTTGAAGGGTTGGTT+TGG 0.427066 4.2:-84479885 None:intergenic
TTTACCCTGGCTAGTGGACT+GGG 0.439480 4.2:+84480359 MS.gene70039:CDS
CCAAACCCAGTCCACTAGCC+AGG 0.453518 4.2:-84480364 None:intergenic
AGACATCCAGCAAAAGAGTT+AGG 0.453946 4.2:-84479780 None:intergenic
CCTCTCACAAATACAATCTT+GGG 0.454373 4.2:+84479543 MS.gene70039:CDS
TATAGGTCCGAAATCCTTGA+TGG 0.468124 4.2:+84480025 MS.gene70039:CDS
GGATTGAGTAACACAGAAAC+GGG 0.473027 4.2:-84479837 None:intergenic
CACGAGGAATGTTGAAGGGT+TGG 0.473876 4.2:-84479890 None:intergenic
GTTTCTGTGTTACTCAATCC+TGG 0.478867 4.2:+84479840 MS.gene70039:CDS
TGGTTAAGGTATACTTGAGT+AGG 0.482160 4.2:-84479512 None:intergenic
GTACAATAGTGTGAAGAACT+TGG 0.482756 4.2:+84479812 MS.gene70039:CDS
GTTTGGAAAACCAACCTCTA+GGG 0.484257 4.2:-84479868 None:intergenic
TGGTGCCAAGTGGAAGAGAT+AGG 0.487529 4.2:-84478802 None:intergenic
GTTTCGAAAAGTAGTAAACT+TGG 0.491017 4.2:-84479083 None:intergenic
AGCTTCCTATCTCTTCCACT+TGG 0.491188 4.2:+84478797 MS.gene70039:CDS
CGAAACCTTAACTGCACTTG+TGG 0.496385 4.2:+84479100 MS.gene70039:CDS
TTCAGACTTGACTCAAATAG+AGG 0.500328 4.2:+84479273 MS.gene70039:CDS
GGTTTGGAAAACCAACCTCT+AGG 0.502092 4.2:-84479869 None:intergenic
ACTGTTGGTGCAGATTGCTT+AGG 0.504136 4.2:-84479594 None:intergenic
GTTGGTGCAGATTGCTTAGG+TGG 0.508685 4.2:-84479591 None:intergenic
AGGATTGAGTAACACAGAAA+CGG 0.515205 4.2:-84479838 None:intergenic
GACAGGTCAAAAGGTGTTGT+AGG 0.515602 4.2:+84480068 MS.gene70039:CDS
TCAAAATTTACCCTGGCTAG+TGG 0.519380 4.2:+84480353 MS.gene70039:CDS
GTCTGAATTGAGGTCTTGGA+TGG 0.519900 4.2:-84478924 None:intergenic
TTTGTCGACTAACACTTTCA+GGG 0.520320 4.2:-84478717 None:intergenic
TTCTACACGAGGAATGTTGA+AGG 0.521839 4.2:-84479895 None:intergenic
ATTTGTGAGAGGCTCGTTAG+TGG 0.522997 4.2:-84479532 None:intergenic
TTACTTCTGTTATTGGTGCA+AGG 0.527701 4.2:-84479627 None:intergenic
GCCATGGAATTTGGATTCTG+AGG 0.528284 4.2:+84479141 MS.gene70039:CDS
CCTAAGCCAAAATAATAAGC+TGG 0.530209 4.2:-84479921 None:intergenic
AAGTCCAATTATTATACAAA+GGG 0.533133 4.2:+84479972 MS.gene70039:CDS
CCAACCTCTAGGGGTATACC+AGG 0.537768 4.2:-84479858 None:intergenic
TCTTGGGTCTAGTGCCATCA+AGG 0.537782 4.2:-84480039 None:intergenic
TAGGAACGCCAAAGCGAAAG+AGG 0.542595 4.2:+84479940 MS.gene70039:CDS
CCCTCAGAATCCAAATTCCA+TGG 0.542858 4.2:-84479142 None:intergenic
TCCAATTATTATACAAAGGG+AGG 0.543047 4.2:+84479975 MS.gene70039:CDS
ATCATTGTTGCAGTTGATGG+TGG 0.547051 4.2:-84478840 None:intergenic
ACCAAACATCGTCTGAATTG+AGG 0.548115 4.2:-84478934 None:intergenic
CTTGACATCAAAATTTACCC+TGG 0.548921 4.2:+84480346 MS.gene70039:CDS
CTTCAAGATCATCAAGAGGA+AGG 0.549012 4.2:-84480187 None:intergenic
CAAGTCCAATTATTATACAA+AGG 0.557972 4.2:+84479971 MS.gene70039:CDS
AGACGCGAATAAACAGAAAG+TGG 0.569116 4.2:-84480143 None:intergenic
AATTCCATGGCTGTATGCCA+GGG 0.570531 4.2:-84479129 None:intergenic
CCATGGAATTTGGATTCTGA+GGG 0.571821 4.2:+84479142 MS.gene70039:CDS
CCCAAGATTGTATTTGTGAG+AGG 0.572271 4.2:-84479543 None:intergenic
CAAGGCATTACTCCAACTGT+TGG 0.575256 4.2:-84479609 None:intergenic
GAAGTCAACAAAATCTCCGT+TGG 0.575489 4.2:-84479706 None:intergenic
AAGCAATCTGCACCAACAGT+TGG 0.576657 4.2:+84479597 MS.gene70039:CDS
TTGGTGCAGATTGCTTAGGT+GGG 0.579593 4.2:-84479590 None:intergenic
CCTGGTATACCCCTAGAGGT+TGG 0.584272 4.2:+84479858 MS.gene70039:CDS
TTGTCGACTAACACTTTCAG+GGG 0.591923 4.2:-84478716 None:intergenic
TTGTTCATGTTGAGAAGCCA+TGG 0.594375 4.2:-84478672 None:intergenic
GAGGAAATCACACACAACAT+TGG 0.597623 4.2:+84479292 MS.gene70039:CDS
GATAAGCATTGGTGAATCTG+AGG 0.612061 4.2:+84480217 MS.gene70039:CDS
ATGATCTTTGTAGAAGCCAA+CGG 0.617543 4.2:+84479690 MS.gene70039:CDS
TTCACTTCAAGATCATCAAG+AGG 0.622399 4.2:-84480191 None:intergenic
TTTGGAAAACCAACCTCTAG+GGG 0.622428 4.2:-84479867 None:intergenic
AAGTGTTAGTCGACAAACAA+AGG 0.623819 4.2:+84478723 MS.gene70039:CDS
TAGTAAACTTGGAACAAGCA+TGG 0.623962 4.2:-84479072 None:intergenic
CAAACCCAGTCCACTAGCCA+GGG 0.627343 4.2:-84480363 None:intergenic
GGTCTTGGATGGTTTCGTAG+AGG 0.631330 4.2:-84478913 None:intergenic
AGCTTTACAACGGACCCGAA+TGG 0.631399 4.2:-84479750 None:intergenic
TACAACGGACCCGAATGGCA+TGG 0.632034 4.2:-84479745 None:intergenic
AGGAACGCCAAAGCGAAAGA+GGG 0.635468 4.2:+84479941 MS.gene70039:CDS
ACACAACATTGGCAAGCAAG+AGG 0.636713 4.2:+84479303 MS.gene70039:CDS
AAGTATGTCTCATACGAACA+AGG 0.645228 4.2:-84479226 None:intergenic
TCTACACGAGGAATGTTGAA+GGG 0.646068 4.2:-84479894 None:intergenic
TTGATGTCAAGAATGCTCCA+AGG 0.651294 4.2:-84480334 None:intergenic
TCAGTTGAACAGGACTAGTG+TGG 0.657795 4.2:+84479165 MS.gene70039:CDS
ATTCCATGGCTGTATGCCAG+GGG 0.663395 4.2:-84479128 None:intergenic
CAATCCTGGTATACCCCTAG+AGG 0.663504 4.2:+84479854 MS.gene70039:CDS
GGTGGCTAAAAGGCGGACAA+TGG 0.668124 4.2:-84478822 None:intergenic
GAAGTGAAGATGATAAGCAT+TGG 0.669635 4.2:+84480206 MS.gene70039:CDS
TTCATGCACAGTAAGTCACA+TGG 0.670403 4.2:-84478998 None:intergenic
AGTTGATGGTGGCTAAAAGG+CGG 0.682328 4.2:-84478829 None:intergenic
TTCCATGGCTGTATGCCAGG+GGG 0.683468 4.2:-84479127 None:intergenic
AGGCGGACAATGGTGCCAAG+TGG 0.686421 4.2:-84478812 None:intergenic
AGGTCCCAAAAGCTTTACAA+CGG 0.687301 4.2:-84479760 None:intergenic
TAAGCTGGCTGTTCTACACG+AGG 0.728528 4.2:-84479906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTCCAATTATTATACAAA+GGG + chr4.2:84479972-84479991 MS.gene70039:CDS 20.0%
!! CAGAAAACAATTTATAAACT+CGG - chr4.2:84480265-84480284 None:intergenic 20.0%
!! CATTAAGAATTGAAATTGAT+TGG - chr4.2:84479422-84479441 None:intergenic 20.0%
! AAGTTACGTGAATCAATTAT+AGG + chr4.2:84480008-84480027 MS.gene70039:CDS 25.0%
! CAAGTCCAATTATTATACAA+AGG + chr4.2:84479971-84479990 MS.gene70039:CDS 25.0%
! TCAATATCTATACATCAGAA+AGG - chr4.2:84479491-84479510 None:intergenic 25.0%
!! ATCCATTTTACTTCTGTTAT+TGG - chr4.2:84479637-84479656 None:intergenic 25.0%
!! GTCAAATTTGATTCTTGTTT+AGG - chr4.2:84480425-84480444 None:intergenic 25.0%
!!! AAAAATGGATTATATGCTGT+TGG + chr4.2:84480101-84480120 MS.gene70039:CDS 25.0%
!!! TTTCTGTTATTTTAACCTCT+TGG + chr4.2:84480279-84480298 MS.gene70039:intron 25.0%
!!! TTTTTGATGTTTTCAAGGAA+TGG - chr4.2:84478893-84478912 None:intergenic 25.0%
AAAGCCTACACAAAAGTAAA+GGG - chr4.2:84480308-84480327 None:intergenic 30.0%
AGAATTGAAATTGATTGGAC+AGG - chr4.2:84479417-84479436 None:intergenic 30.0%
CACCAATAACAGAAGTAAAA+TGG + chr4.2:84479632-84479651 MS.gene70039:CDS 30.0%
CAGAAGTAAAATGGATGTTA+AGG + chr4.2:84479641-84479660 MS.gene70039:CDS 30.0%
GTAAAAAAATGTGACGACAA+AGG - chr4.2:84479347-84479366 None:intergenic 30.0%
GTAGGATTTGTGAAGAAAAA+TGG + chr4.2:84480086-84480105 MS.gene70039:CDS 30.0%
GTTTCGAAAAGTAGTAAACT+TGG - chr4.2:84479086-84479105 None:intergenic 30.0%
TCCAATTATTATACAAAGGG+AGG + chr4.2:84479975-84479994 MS.gene70039:CDS 30.0%
TCCTCCCTTTGTATAATAAT+TGG - chr4.2:84479979-84479998 None:intergenic 30.0%
TTGGACAGGTTAAAACAATA+AGG - chr4.2:84479403-84479422 None:intergenic 30.0%
! AGAGGTTTTTGATGTTTTCA+AGG - chr4.2:84478898-84478917 None:intergenic 30.0%
!!! AAGGAACAAAGTTGTTTTTG+TGG + chr4.2:84478742-84478761 MS.gene70039:CDS 30.0%
AAAAGTAAAGGGAATCCAAG+AGG - chr4.2:84480297-84480316 None:intergenic 35.0%
AAGTATGTCTCATACGAACA+AGG - chr4.2:84479229-84479248 None:intergenic 35.0%
AAGTGTTAGTCGACAAACAA+AGG + chr4.2:84478723-84478742 MS.gene70039:CDS 35.0%
AGGATTGAGTAACACAGAAA+CGG - chr4.2:84479841-84479860 None:intergenic 35.0%
AGTAAGTCACATGGATTTCT+TGG - chr4.2:84478992-84479011 None:intergenic 35.0%
ATGATCTTTGTAGAAGCCAA+CGG + chr4.2:84479690-84479709 MS.gene70039:CDS 35.0%
CAAAGCCTACACAAAAGTAA+AGG - chr4.2:84480309-84480328 None:intergenic 35.0%
CCTAAGCCAAAATAATAAGC+TGG - chr4.2:84479924-84479943 None:intergenic 35.0%
CCTCTCACAAATACAATCTT+GGG + chr4.2:84479543-84479562 MS.gene70039:CDS 35.0%
CTTGACATCAAAATTTACCC+TGG + chr4.2:84480346-84480365 MS.gene70039:CDS 35.0%
GAAGTGAAGATGATAAGCAT+TGG + chr4.2:84480206-84480225 MS.gene70039:CDS 35.0%
GTACAATAGTGTGAAGAACT+TGG + chr4.2:84479812-84479831 MS.gene70039:CDS 35.0%
GTGAAGCTTCATGATTAAGA+CGG - chr4.2:84479381-84479400 None:intergenic 35.0%
TAGTAAACTTGGAACAAGCA+TGG - chr4.2:84479075-84479094 None:intergenic 35.0%
TGAAGCTTCATGATTAAGAC+GGG - chr4.2:84479380-84479399 None:intergenic 35.0%
TGGTTAAGGTATACTTGAGT+AGG - chr4.2:84479515-84479534 None:intergenic 35.0%
TTACTTCTGTTATTGGTGCA+AGG - chr4.2:84479630-84479649 None:intergenic 35.0%
TTCACTTCAAGATCATCAAG+AGG - chr4.2:84480194-84480213 None:intergenic 35.0%
TTCAGACTTGACTCAAATAG+AGG + chr4.2:84479273-84479292 MS.gene70039:CDS 35.0%
TTGATCATTGTTGCAGTTGA+TGG - chr4.2:84478846-84478865 None:intergenic 35.0%
! GAACAGCCAGCTTATTATTT+TGG + chr4.2:84479915-84479934 MS.gene70039:CDS 35.0%
! TTTGTCGACTAACACTTTCA+GGG - chr4.2:84478720-84478739 None:intergenic 35.0%
!! GATTCCCTTTACTTTTGTGT+AGG + chr4.2:84480301-84480320 MS.gene70039:intron 35.0%
!!! CCAGCTTATTATTTTGGCTT+AGG + chr4.2:84479921-84479940 MS.gene70039:CDS 35.0%
AAAATGTGACGACAAAGGAG+AGG - chr4.2:84479342-84479361 None:intergenic 40.0%
AAATGTGACGACAAAGGAGA+GGG - chr4.2:84479341-84479360 None:intergenic 40.0%
ACCAAACATCGTCTGAATTG+AGG - chr4.2:84478937-84478956 None:intergenic 40.0%
ACCTCAATTCAGACGATGTT+TGG + chr4.2:84478933-84478952 MS.gene70039:CDS 40.0%
AGACATCCAGCAAAAGAGTT+AGG - chr4.2:84479783-84479802 None:intergenic 40.0%
AGACGCGAATAAACAGAAAG+TGG - chr4.2:84480146-84480165 None:intergenic 40.0%
AGCTTTCTTACCATGCCATT+CGG + chr4.2:84479735-84479754 MS.gene70039:CDS 40.0%
AGGTCCCAAAAGCTTTACAA+CGG - chr4.2:84479763-84479782 None:intergenic 40.0%
CCATGGAATTTGGATTCTGA+GGG + chr4.2:84479142-84479161 MS.gene70039:CDS 40.0%
CCCAAGATTGTATTTGTGAG+AGG - chr4.2:84479546-84479565 None:intergenic 40.0%
CTTCAAGATCATCAAGAGGA+AGG - chr4.2:84480190-84480209 None:intergenic 40.0%
GAAGTCAACAAAATCTCCGT+TGG - chr4.2:84479709-84479728 None:intergenic 40.0%
GAGGAAATCACACACAACAT+TGG + chr4.2:84479292-84479311 MS.gene70039:CDS 40.0%
GCCTCTCACAAATACAATCT+TGG + chr4.2:84479542-84479561 MS.gene70039:CDS 40.0%
GGATTGAGTAACACAGAAAC+GGG - chr4.2:84479840-84479859 None:intergenic 40.0%
GTTTGGAAAACCAACCTCTA+GGG - chr4.2:84479871-84479890 None:intergenic 40.0%
TAGTGTGGTTGAAACGTTTC+TGG + chr4.2:84479180-84479199 MS.gene70039:CDS 40.0%
TATAGGTCCGAAATCCTTGA+TGG + chr4.2:84480025-84480044 MS.gene70039:CDS 40.0%
TCAAAATTTACCCTGGCTAG+TGG + chr4.2:84480353-84480372 MS.gene70039:CDS 40.0%
TCTACACGAGGAATGTTGAA+GGG - chr4.2:84479897-84479916 None:intergenic 40.0%
TCTAGTGCCATCAAGGATTT+CGG - chr4.2:84480035-84480054 None:intergenic 40.0%
TTCATGCACAGTAAGTCACA+TGG - chr4.2:84479001-84479020 None:intergenic 40.0%
TTCTACACGAGGAATGTTGA+AGG - chr4.2:84479898-84479917 None:intergenic 40.0%
TTGATGTCAAGAATGCTCCA+AGG - chr4.2:84480337-84480356 None:intergenic 40.0%
TTGCAGCTGTTGAAGGAATT+CGG + chr4.2:84479247-84479266 MS.gene70039:CDS 40.0%
TTTGGAAAACCAACCTCTAG+GGG - chr4.2:84479870-84479889 None:intergenic 40.0%
! AACTCTTTTGCTGGATGTCT+TGG + chr4.2:84479783-84479802 MS.gene70039:CDS 40.0%
! GTTTCTGTGTTACTCAATCC+TGG + chr4.2:84479840-84479859 MS.gene70039:CDS 40.0%
! GTTTGTCGACTAACACTTTC+AGG - chr4.2:84478721-84478740 None:intergenic 40.0%
! GTTTTCCACAAGTGCAGTTA+AGG - chr4.2:84479108-84479127 None:intergenic 40.0%
! TACAACACCTTTTGACCTGT+CGG - chr4.2:84480069-84480088 None:intergenic 40.0%
! TTGTCGACTAACACTTTCAG+GGG - chr4.2:84478719-84478738 None:intergenic 40.0%
!! ATCATTGTTGCAGTTGATGG+TGG - chr4.2:84478843-84478862 None:intergenic 40.0%
!! GATAAGCATTGGTGAATCTG+AGG + chr4.2:84480217-84480236 MS.gene70039:CDS 40.0%
AAATTCCATGGCTGTATGCC+AGG - chr4.2:84479133-84479152 None:intergenic 45.0%
AAGCAATCTGCACCAACAGT+TGG + chr4.2:84479597-84479616 MS.gene70039:CDS 45.0%
AATTCCATGGCTGTATGCCA+GGG - chr4.2:84479132-84479151 None:intergenic 45.0%
ACACAACATTGGCAAGCAAG+AGG + chr4.2:84479303-84479322 MS.gene70039:CDS 45.0%
ACTGTTGGTGCAGATTGCTT+AGG - chr4.2:84479597-84479616 None:intergenic 45.0%
AGCTTCCTATCTCTTCCACT+TGG + chr4.2:84478797-84478816 MS.gene70039:CDS 45.0%
ATTTGTGAGAGGCTCGTTAG+TGG - chr4.2:84479535-84479554 None:intergenic 45.0%
CATCGTCTGAATTGAGGTCT+TGG - chr4.2:84478931-84478950 None:intergenic 45.0%
CCCTCAGAATCCAAATTCCA+TGG - chr4.2:84479145-84479164 None:intergenic 45.0%
CGAAACCTTAACTGCACTTG+TGG + chr4.2:84479100-84479119 MS.gene70039:CDS 45.0%
GACATACTTGCAGCTGTTGA+AGG + chr4.2:84479240-84479259 MS.gene70039:CDS 45.0%
GCCATGGAATTTGGATTCTG+AGG + chr4.2:84479141-84479160 MS.gene70039:CDS 45.0%
GCTTTCTTACCATGCCATTC+GGG + chr4.2:84479736-84479755 MS.gene70039:CDS 45.0%
GGTTTGGAAAACCAACCTCT+AGG - chr4.2:84479872-84479891 None:intergenic 45.0%
GTCTGAATTGAGGTCTTGGA+TGG - chr4.2:84478927-84478946 None:intergenic 45.0%
TCTTGATCCCTCTTTCGCTT+TGG - chr4.2:84479951-84479970 None:intergenic 45.0%
TGCAGCTGTTGAAGGAATTC+GGG + chr4.2:84479248-84479267 MS.gene70039:CDS 45.0%
TGGCATACAGCCATGGAATT+TGG + chr4.2:84479132-84479151 MS.gene70039:CDS 45.0%
TTGGTGCAGATTGCTTAGGT+GGG - chr4.2:84479593-84479612 None:intergenic 45.0%
! ACAACACCTTTTGACCTGTC+GGG - chr4.2:84480068-84480087 None:intergenic 45.0%
! ATTCTGAGGGTCAGTTGAAC+AGG + chr4.2:84479155-84479174 MS.gene70039:CDS 45.0%
! CAAGGCATTACTCCAACTGT+TGG - chr4.2:84479612-84479631 None:intergenic 45.0%
! GCATTGGTGAATCTGAGGTA+AGG + chr4.2:84480222-84480241 MS.gene70039:intron 45.0%
! GGGTCCGTTGTAAAGCTTTT+GGG + chr4.2:84479756-84479775 MS.gene70039:CDS 45.0%
! TCAGTTGAACAGGACTAGTG+TGG + chr4.2:84479165-84479184 MS.gene70039:CDS 45.0%
! TTGGGACCTAACTCTTTTGC+TGG + chr4.2:84479774-84479793 MS.gene70039:CDS 45.0%
!! AGGTGGGTTGTCTTTGTTCT+TGG - chr4.2:84479577-84479596 None:intergenic 45.0%
!! AGTTGATGGTGGCTAAAAGG+CGG - chr4.2:84478832-84478851 None:intergenic 45.0%
!! GACAGGTCAAAAGGTGTTGT+AGG + chr4.2:84480068-84480087 MS.gene70039:CDS 45.0%
!! GGAATGTTGAAGGGTTGGTT+TGG - chr4.2:84479888-84479907 None:intergenic 45.0%
!! TGCAGTTGATGGTGGCTAAA+AGG - chr4.2:84478835-84478854 None:intergenic 45.0%
AGCTTTACAACGGACCCGAA+TGG - chr4.2:84479753-84479772 None:intergenic 50.0%
AGGAACGCCAAAGCGAAAGA+GGG + chr4.2:84479941-84479960 MS.gene70039:CDS 50.0%
ATTCCATGGCTGTATGCCAG+GGG - chr4.2:84479131-84479150 None:intergenic 50.0%
CAATCCTGGTATACCCCTAG+AGG + chr4.2:84479854-84479873 MS.gene70039:CDS 50.0%
CACGAGGAATGTTGAAGGGT+TGG - chr4.2:84479893-84479912 None:intergenic 50.0%
GAGAGGCTCGTTAGTGGTTA+AGG - chr4.2:84479529-84479548 None:intergenic 50.0%
GGTCTTGGATGGTTTCGTAG+AGG - chr4.2:84478916-84478935 None:intergenic 50.0%
GTTGGTGCAGATTGCTTAGG+TGG - chr4.2:84479594-84479613 None:intergenic 50.0%
TAAGCTGGCTGTTCTACACG+AGG - chr4.2:84479909-84479928 None:intergenic 50.0%
TAGGAACGCCAAAGCGAAAG+AGG + chr4.2:84479940-84479959 MS.gene70039:CDS 50.0%
TCTTGGGTCTAGTGCCATCA+AGG - chr4.2:84480042-84480061 None:intergenic 50.0%
! AACACCTTTTGACCTGTCGG+GGG - chr4.2:84480066-84480085 None:intergenic 50.0%
! ATTTACCCTGGCTAGTGGAC+TGG + chr4.2:84480358-84480377 MS.gene70039:CDS 50.0%
! CAACACCTTTTGACCTGTCG+GGG - chr4.2:84480067-84480086 None:intergenic 50.0%
! CGGGTCCGTTGTAAAGCTTT+TGG + chr4.2:84479755-84479774 MS.gene70039:CDS 50.0%
! TGGTGCCAAGTGGAAGAGAT+AGG - chr4.2:84478805-84478824 None:intergenic 50.0%
!! GTGTAGGCTTTGAGCTTCCT+TGG + chr4.2:84480317-84480336 MS.gene70039:intron 50.0%
!! TTTACCCTGGCTAGTGGACT+GGG + chr4.2:84480359-84480378 MS.gene70039:CDS 50.0%
AGATCCCCCGACAGGTCAAA+AGG + chr4.2:84480059-84480078 MS.gene70039:CDS 55.0%
CAAACCCAGTCCACTAGCCA+GGG - chr4.2:84480366-84480385 None:intergenic 55.0%
CCTGGTATACCCCTAGAGGT+TGG + chr4.2:84479858-84479877 MS.gene70039:CDS 55.0%
GGTGGCTAAAAGGCGGACAA+TGG - chr4.2:84478825-84478844 None:intergenic 55.0%
TACAACGGACCCGAATGGCA+TGG - chr4.2:84479748-84479767 None:intergenic 55.0%
TGCACTTGTGGAAAACCCCC+TGG + chr4.2:84479112-84479131 MS.gene70039:CDS 55.0%
TTCCATGGCTGTATGCCAGG+GGG - chr4.2:84479130-84479149 None:intergenic 55.0%
TTGACCTGTCGGGGGATCTT+GGG - chr4.2:84480058-84480077 None:intergenic 55.0%
TTTGACCTGTCGGGGGATCT+TGG - chr4.2:84480059-84480078 None:intergenic 55.0%
! CCAACCTCTAGGGGTATACC+AGG - chr4.2:84479861-84479880 None:intergenic 55.0%
AACCCCCTGGCATACAGCCA+TGG + chr4.2:84479125-84479144 MS.gene70039:CDS 60.0%
CCAAACCCAGTCCACTAGCC+AGG - chr4.2:84480367-84480386 None:intergenic 60.0%
TAGACCCAAGATCCCCCGAC+AGG + chr4.2:84480051-84480070 MS.gene70039:CDS 60.0%
! AGGCGGACAATGGTGCCAAG+TGG - chr4.2:84478815-84478834 None:intergenic 60.0%
!! CCTGGCTAGTGGACTGGGTT+TGG + chr4.2:84480364-84480383 MS.gene70039:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 84478674 84480454 84478674 ID=MS.gene70039
chr4.2 mRNA 84478674 84480454 84478674 ID=MS.gene70039.t1;Parent=MS.gene70039
chr4.2 exon 84478674 84479324 84478674 ID=MS.gene70039.t1.exon1;Parent=MS.gene70039.t1
chr4.2 CDS 84478674 84479324 84478674 ID=cds.MS.gene70039.t1;Parent=MS.gene70039.t1
chr4.2 exon 84479504 84480238 84479504 ID=MS.gene70039.t1.exon2;Parent=MS.gene70039.t1
chr4.2 CDS 84479504 84480238 84479504 ID=cds.MS.gene70039.t1;Parent=MS.gene70039.t1
chr4.2 exon 84480323 84480454 84480323 ID=MS.gene70039.t1.exon3;Parent=MS.gene70039.t1
chr4.2 CDS 84480323 84480454 84480323 ID=cds.MS.gene70039.t1;Parent=MS.gene70039.t1
Gene Sequence

>MS.gene70039

ATGGCTTCTCAACATGAACAACAAGAAGAATCAAAAACGATTCCCCTGAAAGTGTTAGTCGACAAACAAAGGAACAAAGTTGTTTTTGTGGAAGCAACAAAAGACTTTGTTGATACTATTTTCAGCTTCCTATCTCTTCCACTTGGCACCATTGTCCGCCTTTTAGCCACCATCAACTGCAACAATGATCAACAAAAACAACTCTCAGAATCATCACCATTCCTTGAAAACATCAAAAACCTCTACGAAACCATCCAAGACCTCAATTCAGACGATGTTTGGTACAACTCTTTCTGCAAACATATGTTGTTGCATCCAAGAAATCCATGTGACTTACTGTGCATGAAGTTGTTCTTAAATATTGATGATACTGAAACATCAAATAAATTTTTTGTGTGCCATGCTTGTTCCAAGTTTACTACTTTTCGAAACCTTAACTGCACTTGTGGAAAACCCCCTGGCATACAGCCATGGAATTTGGATTCTGAGGGTCAGTTGAACAGGACTAGTGTGGTTGAAACGTTTCTGGTGTCTGATGATTTGAAGATTGTTCCTTGTTCGTATGAGACATACTTGCAGCTGTTGAAGGAATTCGGGTATTCAGACTTGACTCAAATAGAGGAAATCACACACAACATTGGCAAGCAAGAGGTAACTACTTATGCCCTCTCCTTTGTCGTCACATTTTTTTACGTTTTTTATACCCGTCTTAATCATGAAGCTTCACCTTATTGTTTTAACCTGTCCAATCAATTTCAATTCTTAATGTTGTGATTTATTGCTTCATTTTTTTTTAAGAAGAAATTGATCACTTCCTTTCTGATGTATAGATATTGAACCTACTCAAGTATACCTTAACCACTAACGAGCCTCTCACAAATACAATCTTGGGATGTAGCTCCAAGAACAAAGACAACCCACCTAAGCAATCTGCACCAACAGTTGGAGTAATGCCTTGCACCAATAACAGAAGTAAAATGGATGTTAAGGTAGTGCAAAGTAAATCTCAGAAAAAGATGATCTTTGTAGAAGCCAACGGAGATTTTGTTGACTTCATTTTTAGCTTTCTTACCATGCCATTCGGGTCCGTTGTAAAGCTTTTGGGACCTAACTCTTTTGCTGGATGTCTTGGTAATTTGTACAATAGTGTGAAGAACTTGGATCCCGTTTCTGTGTTACTCAATCCTGGTATACCCCTAGAGGTTGGTTTTCCAAACCAACCCTTCAACATTCCTCGTGTAGAACAGCCAGCTTATTATTTTGGCTTAGGAACGCCAAAGCGAAAGAGGGATCAAGACAAGTCCAATTATTATACAAAGGGAGGAGTGATTTCTAAGTTACGTGAATCAATTATAGGTCCGAAATCCTTGATGGCACTAGACCCAAGATCCCCCGACAGGTCAAAAGGTGTTGTAGGATTTGTGAAGAAAAATGGATTATATGCTGTTGGAGATGATCTAAAAGTAAAACCACTTTCTGTTTATTCGCGTCTTTCATATTTGAAAGAGTTAAGCCTTCCTCTTGATGATCTTGAAGTGAAGATGATAAGCATTGGTGAATCTGAGGTAAGGTTGCTATTATTTTACGACCGAGTTTATAAATTGTTTTCTGTTATTTTAACCTCTTGGATTCCCTTTACTTTTGTGTAGGCTTTGAGCTTCCTTGGAGCATTCTTGACATCAAAATTTACCCTGGCTAGTGGACTGGGTTTGGATGTGCATAAAAAAGAATTCACTTCTTTGAAAGTGCCTAAACAAGAATCAAATTTGACATCACAGTAA
Protein sequence

>MS.gene70039.t1

MASQHEQQEESKTIPLKVLVDKQRNKVVFVEATKDFVDTIFSFLSLPLGTIVRLLATINCNNDQQKQLSESSPFLENIKNLYETIQDLNSDDVWYNSFCKHMLLHPRNPCDLLCMKLFLNIDDTETSNKFFVCHACSKFTTFRNLNCTCGKPPGIQPWNLDSEGQLNRTSVVETFLVSDDLKIVPCSYETYLQLLKEFGYSDLTQIEEITHNIGKQEILNLLKYTLTTNEPLTNTILGCSSKNKDNPPKQSAPTVGVMPCTNNRSKMDVKVVQSKSQKKMIFVEANGDFVDFIFSFLTMPFGSVVKLLGPNSFAGCLGNLYNSVKNLDPVSVLLNPGIPLEVGFPNQPFNIPRVEQPAYYFGLGTPKRKRDQDKSNYYTKGGVISKLRESIIGPKSLMALDPRSPDRSKGVVGFVKKNGLYAVGDDLKVKPLSVYSRLSYLKELSLPLDDLEVKMISIGESEALSFLGAFLTSKFTLASGLGLDVHKKEFTSLKVPKQESNLTSQ