AlfalfaGEDB | MS.gene70039

M. sativa cultivar XinJiangDaYe / MS.gene70039

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70039.t1	AES86950.1	65.7	516	130	8	8	502	4	493	1.10E-171	613.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70039.t1	G7JQ74	65.7	516	130	8	8	502	4	493	7.7e-172	613.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene70039	PPI
MS.gene001108	MS.gene70039	PPI
MS.gene001109	MS.gene70039	PPI
MS.gene007488	MS.gene70039	PPI
MS.gene009400	MS.gene70039	PPI
MS.gene010675	MS.gene70039	PPI
MS.gene037535	MS.gene70039	PPI
MS.gene037540	MS.gene70039	PPI
MS.gene037545	MS.gene70039	PPI
MS.gene037548	MS.gene70039	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70039.t1	MTR_4g017410	66.603	521	133	7	8	505	4	506	0.0	647
MS.gene70039.t1	MTR_4g017440	64.881	504	159	8	4	489	5	508	0.0	592
MS.gene70039.t1	MTR_4g017830	60.190	525	174	12	3	505	2	513	0.0	568
MS.gene70039.t1	MTR_4g017610	60.816	490	170	6	1	482	1	476	0.0	564
MS.gene70039.t1	MTR_4g017550	63.080	474	149	10	27	481	3	469	0.0	548
MS.gene70039.t1	MTR_4g017470	60.962	520	150	13	1	500	1	487	0.0	534
MS.gene70039.t1	MTR_4g019340	57.895	494	151	10	12	475	37	503	6.34e-177	507
MS.gene70039.t1	MTR_4g019310	37.218	532	266	17	1	499	1	497	1.01e-95	299
MS.gene70039.t1	MTR_7g066350	34.800	500	252	12	7	485	3	449	1.57e-76	248
MS.gene70039.t1	MTR_7g066340	32.129	498	269	10	3	481	2	449	1.81e-70	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70039.t1	AT5G01130	31.837	490	268	16	6	481	3	440	1.20e-59	203
MS.gene70039.t1	AT5G01150	29.608	510	295	11	10	488	6	482	1.63e-54	191
MS.gene70039.t1	AT5G01120	29.175	497	310	14	10	481	6	485	8.33e-52	184
MS.gene70039.t1	AT3G09110	34.535	333	183	10	10	327	6	318	5.26e-49	172
MS.gene70039.t1	AT5G01140	30.237	506	272	16	16	499	12	458	7.01e-48	172
MS.gene70039.t1	AT3G09140	27.903	534	293	17	7	488	3	496	4.59e-47	171
MS.gene70039.t1	AT3G09140	26.639	244	155	6	258	478	1	243	5.20e-12	68.6
MS.gene70039.t1	AT5G43240	28.210	514	289	15	14	481	10	489	4.98e-47	171
MS.gene70039.t1	AT5G43240	28.210	514	289	15	14	481	10	489	4.98e-47	171
MS.gene70039.t1	AT5G43240	28.210	514	289	15	14	481	10	489	4.98e-47	171

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Find 109 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCCATGGCTGTATGCC+AGG	0.407093	4.2:-84479130	None:intergenic
AAGCAATCTGCACCAACAGT+TGG	0.576657	4.2:+84479597	MS.gene70039:CDS
AAGTATGTCTCATACGAACA+AGG	0.645228	4.2:-84479226	None:intergenic
AAGTCCAATTATTATACAAA+GGG	0.533133	4.2:+84479972	MS.gene70039:CDS
AAGTGTTAGTCGACAAACAA+AGG	0.623819	4.2:+84478723	MS.gene70039:CDS
AAGTTACGTGAATCAATTAT+AGG	0.328775	4.2:+84480008	MS.gene70039:CDS
AATTCCATGGCTGTATGCCA+GGG	0.570531	4.2:-84479129	None:intergenic
ACACAACATTGGCAAGCAAG+AGG	0.636713	4.2:+84479303	MS.gene70039:CDS
ACCAAACATCGTCTGAATTG+AGG	0.548115	4.2:-84478934	None:intergenic
ACCTCAATTCAGACGATGTT+TGG	0.367095	4.2:+84478933	MS.gene70039:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCCTACACAAAAGTAAA+GGG	-	chr4.2:84480308-84480327	None:intergenic	30.0%
AGAATTGAAATTGATTGGAC+AGG	-	chr4.2:84479417-84479436	None:intergenic	30.0%
CACCAATAACAGAAGTAAAA+TGG	+	chr4.2:84479632-84479651	MS.gene70039:CDS	30.0%
CAGAAGTAAAATGGATGTTA+AGG	+	chr4.2:84479641-84479660	MS.gene70039:CDS	30.0%
GTAAAAAAATGTGACGACAA+AGG	-	chr4.2:84479347-84479366	None:intergenic	30.0%
GTAGGATTTGTGAAGAAAAA+TGG	+	chr4.2:84480086-84480105	MS.gene70039:CDS	30.0%
GTTTCGAAAAGTAGTAAACT+TGG	-	chr4.2:84479086-84479105	None:intergenic	30.0%
TCCAATTATTATACAAAGGG+AGG	+	chr4.2:84479975-84479994	MS.gene70039:CDS	30.0%
TCCTCCCTTTGTATAATAAT+TGG	-	chr4.2:84479979-84479998	None:intergenic	30.0%
TTGGACAGGTTAAAACAATA+AGG	-	chr4.2:84479403-84479422	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	84478674	84480454	84478674	ID=MS.gene70039
chr4.2	mRNA	84478674	84480454	84478674	ID=MS.gene70039.t1;Parent=MS.gene70039
chr4.2	exon	84478674	84479324	84478674	ID=MS.gene70039.t1.exon1;Parent=MS.gene70039.t1
chr4.2	CDS	84478674	84479324	84478674	ID=cds.MS.gene70039.t1;Parent=MS.gene70039.t1
chr4.2	exon	84479504	84480238	84479504	ID=MS.gene70039.t1.exon2;Parent=MS.gene70039.t1
chr4.2	CDS	84479504	84480238	84479504	ID=cds.MS.gene70039.t1;Parent=MS.gene70039.t1
chr4.2	exon	84480323	84480454	84480323	ID=MS.gene70039.t1.exon3;Parent=MS.gene70039.t1
chr4.2	CDS	84480323	84480454	84480323	ID=cds.MS.gene70039.t1;Parent=MS.gene70039.t1

Gene Sequence

>MS.gene70039

ATGGCTTCTCAACATGAACAACAAGAAGAATCAAAAACGATTCCCCTGAAAGTGTTAGTCGACAAACAAAGGAACAAAGTTGTTTTTGTGGAAGCAACAAAAGACTTTGTTGATACTATTTTCAGCTTCCTATCTCTTCCACTTGGCACCATTGTCCGCCTTTTAGCCACCATCAACTGCAACAATGATCAACAAAAACAACTCTCAGAATCATCACCATTCCTTGAAAACATCAAAAACCTCTACGAAACCATCCAAGACCTCAATTCAGACGATGTTTGGTACAACTCTTTCTGCAAACATATGTTGTTGCATCCAAGAAATCCATGTGACTTACTGTGCATGAAGTTGTTCTTAAATATTGATGATACTGAAACATCAAATAAATTTTTTGTGTGCCATGCTTGTTCCAAGTTTACTACTTTTCGAAACCTTAACTGCACTTGTGGAAAACCCCCTGGCATACAGCCATGGAATTTGGATTCTGAGGGTCAGTTGAACAGGACTAGTGTGGTTGAAACGTTTCTGGTGTCTGATGATTTGAAGATTGTTCCTTGTTCGTATGAGACATACTTGCAGCTGTTGAAGGAATTCGGGTATTCAGACTTGACTCAAATAGAGGAAATCACACACAACATTGGCAAGCAAGAGGTAACTACTTATGCCCTCTCCTTTGTCGTCACATTTTTTTACGTTTTTTATACCCGTCTTAATCATGAAGCTTCACCTTATTGTTTTAACCTGTCCAATCAATTTCAATTCTTAATGTTGTGATTTATTGCTTCATTTTTTTTTAAGAAGAAATTGATCACTTCCTTTCTGATGTATAGATATTGAACCTACTCAAGTATACCTTAACCACTAACGAGCCTCTCACAAATACAATCTTGGGATGTAGCTCCAAGAACAAAGACAACCCACCTAAGCAATCTGCACCAACAGTTGGAGTAATGCCTTGCACCAATAACAGAAGTAAAATGGATGTTAAGGTAGTGCAAAGTAAATCTCAGAAAAAGATGATCTTTGTAGAAGCCAACGGAGATTTTGTTGACTTCATTTTTAGCTTTCTTACCATGCCATTCGGGTCCGTTGTAAAGCTTTTGGGACCTAACTCTTTTGCTGGATGTCTTGGTAATTTGTACAATAGTGTGAAGAACTTGGATCCCGTTTCTGTGTTACTCAATCCTGGTATACCCCTAGAGGTTGGTTTTCCAAACCAACCCTTCAACATTCCTCGTGTAGAACAGCCAGCTTATTATTTTGGCTTAGGAACGCCAAAGCGAAAGAGGGATCAAGACAAGTCCAATTATTATACAAAGGGAGGAGTGATTTCTAAGTTACGTGAATCAATTATAGGTCCGAAATCCTTGATGGCACTAGACCCAAGATCCCCCGACAGGTCAAAAGGTGTTGTAGGATTTGTGAAGAAAAATGGATTATATGCTGTTGGAGATGATCTAAAAGTAAAACCACTTTCTGTTTATTCGCGTCTTTCATATTTGAAAGAGTTAAGCCTTCCTCTTGATGATCTTGAAGTGAAGATGATAAGCATTGGTGAATCTGAGGTAAGGTTGCTATTATTTTACGACCGAGTTTATAAATTGTTTTCTGTTATTTTAACCTCTTGGATTCCCTTTACTTTTGTGTAGGCTTTGAGCTTCCTTGGAGCATTCTTGACATCAAAATTTACCCTGGCTAGTGGACTGGGTTTGGATGTGCATAAAAAAGAATTCACTTCTTTGAAAGTGCCTAAACAAGAATCAAATTTGACATCACAGTAA

Protein sequence

>MS.gene70039.t1

MASQHEQQEESKTIPLKVLVDKQRNKVVFVEATKDFVDTIFSFLSLPLGTIVRLLATINCNNDQQKQLSESSPFLENIKNLYETIQDLNSDDVWYNSFCKHMLLHPRNPCDLLCMKLFLNIDDTETSNKFFVCHACSKFTTFRNLNCTCGKPPGIQPWNLDSEGQLNRTSVVETFLVSDDLKIVPCSYETYLQLLKEFGYSDLTQIEEITHNIGKQEILNLLKYTLTTNEPLTNTILGCSSKNKDNPPKQSAPTVGVMPCTNNRSKMDVKVVQSKSQKKMIFVEANGDFVDFIFSFLTMPFGSVVKLLGPNSFAGCLGNLYNSVKNLDPVSVLLNPGIPLEVGFPNQPFNIPRVEQPAYYFGLGTPKRKRDQDKSNYYTKGGVISKLRESIIGPKSLMALDPRSPDRSKGVVGFVKKNGLYAVGDDLKVKPLSVYSRLSYLKELSLPLDDLEVKMISIGESEALSFLGAFLTSKFTLASGLGLDVHKKEFTSLKVPKQESNLTSQ