AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055262

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055262.t1 MTR_7g062280 76.986 491 95 4 5 478 3 492 0.0 731
MS.gene055262.t1 MTR_7g062300 77.521 476 97 4 1 470 1 472 0.0 712
MS.gene055262.t1 MTR_7g063920 63.410 481 129 6 1 478 1 437 0.0 563
MS.gene055262.t1 MTR_7g063880 56.531 490 178 10 1 477 1 468 7.95e-171 489
MS.gene055262.t1 MTR_7g063900 53.924 497 202 11 1 478 1 489 7.11e-161 464
MS.gene055262.t1 MTR_7g063900 27.600 250 151 8 13 244 253 490 3.81e-11 65.5
MS.gene055262.t1 MTR_7g063840 54.088 477 206 8 8 478 5 474 2.73e-160 462
MS.gene055262.t1 MTR_7g063660 53.430 481 209 6 7 478 4 478 2.00e-158 458
MS.gene055262.t1 MTR_7g063830 53.862 479 184 9 1 477 1 444 5.04e-157 453
MS.gene055262.t1 MTR_7g063820 53.846 494 197 11 5 478 3 485 2.19e-156 453
MS.gene055262.t1 MTR_3g007740 51.566 479 178 12 8 472 5 443 2.03e-142 416
MS.gene055262.t1 MTR_7g063890 52.738 493 207 11 2 477 21 504 3.46e-139 410
MS.gene055262.t1 MTR_7g063670 49.691 485 189 10 10 478 13 458 7.84e-136 399
MS.gene055262.t1 MTR_7g066570 41.296 494 253 8 4 475 6 484 3.41e-110 338
MS.gene055262.t1 MTR_7g066260 42.029 483 238 12 4 471 7 462 1.28e-107 328
MS.gene055262.t1 MTR_7g066260 27.826 230 131 8 3 230 260 456 5.42e-15 77.4
MS.gene055262.t1 MTR_7g066430 41.235 502 250 10 13 477 5 498 2.15e-106 326
MS.gene055262.t1 MTR_7g066430 27.391 230 139 8 256 465 4 225 1.47e-13 73.2
MS.gene055262.t1 MTR_7g066410 38.310 509 263 11 12 473 10 514 1.14e-103 319
MS.gene055262.t1 MTR_7g066410 27.197 239 150 9 6 230 278 506 1.89e-13 72.8
MS.gene055262.t1 MTR_7g066410 28.421 190 106 5 251 419 5 185 4.24e-12 68.6
MS.gene055262.t1 MTR_3g065200 42.013 457 204 11 12 458 3 408 6.55e-100 308
MS.gene055262.t1 MTR_7g012680 39.918 486 242 13 4 478 6 452 1.84e-94 293
MS.gene055262.t1 MTR_7g058710 36.647 513 261 12 1 478 1 484 1.80e-93 292
MS.gene055262.t1 MTR_7g066350 38.316 475 250 8 11 473 8 451 5.68e-91 285
MS.gene055262.t1 MTR_7g066360 40.501 479 231 13 4 467 6 445 7.77e-91 285
MS.gene055262.t1 MTR_7g066290 37.866 478 236 6 4 471 7 433 3.18e-90 282
MS.gene055262.t1 MTR_7g066340 36.605 489 256 9 1 471 1 453 6.48e-90 282
MS.gene055262.t1 MTR_7g066340 29.958 237 145 8 256 476 12 243 6.63e-16 80.5
MS.gene055262.t1 MTR_7g066480 38.478 473 213 9 12 472 16 422 1.49e-87 275
MS.gene055262.t1 MTR_7g066580 36.842 475 243 10 24 474 7 448 8.42e-86 271
MS.gene055262.t1 MTR_7g066490 37.660 470 207 11 12 472 16 408 8.57e-83 262
MS.gene055262.t1 MTR_7g066400 34.694 490 252 10 1 473 1 439 1.14e-81 260
MS.gene055262.t1 MTR_7g063720 54.694 245 96 4 236 478 2 233 2.40e-81 252
MS.gene055262.t1 MTR_7g063720 29.778 225 121 10 14 230 25 220 9.13e-18 82.8
MS.gene055262.t1 MTR_1g041315 34.316 475 260 9 4 455 6 451 3.63e-80 258
MS.gene055262.t1 MTR_7g062270 67.391 184 58 2 6 188 3 185 5.31e-80 254
MS.gene055262.t1 MTR_4g019310 34.406 497 283 13 15 478 11 497 2.75e-73 240
MS.gene055262.t1 MTR_7g058700 34.454 476 213 11 24 478 531 928 1.50e-71 244
MS.gene055262.t1 MTR_7g066310 33.406 461 224 8 11 471 6 383 7.58e-71 231
MS.gene055262.t1 MTR_4g017830 32.190 525 290 16 1 477 1 507 7.59e-65 218
MS.gene055262.t1 MTR_7g063850 43.894 303 147 8 183 477 1 288 1.03e-63 208
MS.gene055262.t1 MTR_2g029400 31.478 467 238 8 6 460 8 404 1.98e-62 209
MS.gene055262.t1 MTR_2g029400 26.852 216 106 5 256 465 14 183 6.64e-12 67.8
MS.gene055262.t1 MTR_4g019340 32.520 492 286 14 1 459 23 501 1.53e-56 196
MS.gene055262.t1 MTR_4g017440 30.550 527 285 16 1 471 1 502 2.26e-55 192
MS.gene055262.t1 MTR_7g100420 40.491 326 160 8 157 467 87 393 8.80e-54 186
MS.gene055262.t1 MTR_7g100420 72.093 43 12 0 13 55 40 82 9.85e-12 67.0
MS.gene055262.t1 MTR_4g017410 31.559 526 268 17 6 477 3 490 8.81e-53 186
MS.gene055262.t1 MTR_4g017410 28.163 245 149 6 259 478 12 254 1.11e-13 73.6
MS.gene055262.t1 MTR_4g017470 29.730 518 281 14 1 477 1 476 1.44e-52 185
MS.gene055262.t1 MTR_7g063690 41.219 279 98 6 8 283 7 222 2.29e-51 174
MS.gene055262.t1 MTR_7g066280 31.863 408 233 12 91 471 1 390 2.56e-50 177
MS.gene055262.t1 MTR_7g066280 27.016 248 147 8 8 230 146 384 8.61e-16 79.7
MS.gene055262.t1 MTR_4g017610 30.862 499 284 16 5 467 2 475 7.50e-48 172
MS.gene055262.t1 MTR_4g017610 28.452 239 148 6 259 477 16 251 1.87e-14 75.9
MS.gene055262.t1 MTR_1g014060 43.204 206 110 5 21 223 9 210 6.33e-42 154
MS.gene055262.t1 MTR_1g014060 39.896 193 105 3 286 478 210 391 2.33e-33 130
MS.gene055262.t1 MTR_1g014060 29.952 207 119 7 268 457 12 209 1.67e-17 84.7
MS.gene055262.t1 MTR_7g066680 34.114 299 152 6 213 467 37 334 2.95e-39 145
MS.gene055262.t1 MTR_7g066680 28.042 189 108 6 5 180 80 253 4.98e-13 70.5
MS.gene055262.t1 MTR_8g023240 26.819 481 310 14 1 465 29 483 2.78e-37 144
MS.gene055262.t1 MTR_4g017550 28.947 494 276 18 26 469 3 471 1.03e-36 141
MS.gene055262.t1 MTR_4g017550 30.579 242 138 9 3 229 240 466 7.18e-14 73.9
MS.gene055262.t1 MTR_8g445860 34.746 236 131 9 13 236 14 238 1.63e-25 105
MS.gene055262.t1 MTR_1g115440 31.102 254 140 8 1 235 1 238 3.77e-22 95.5
MS.gene055262.t1 MTR_1g115440 30.303 231 132 10 256 465 11 233 2.23e-19 87.8
MS.gene055262.t1 MTR_7g063760 56.757 74 31 1 406 478 1 74 7.67e-22 89.7
MS.gene055262.t1 MTR_0150s0010 31.727 249 144 9 1 235 1 237 2.22e-20 90.5
MS.gene055262.t1 MTR_0150s0010 29.018 224 142 6 256 464 10 231 2.12e-17 82.0
MS.gene055262.t1 MTR_7g066390 57.971 69 29 0 399 467 50 118 6.44e-18 81.3
MS.gene055262.t1 MTR_2g067310 33.514 185 70 5 18 196 53 190 6.61e-17 80.5
MS.gene055262.t1 MTR_1g115455 27.778 252 147 8 1 236 1 233 2.47e-15 75.9
MS.gene055262.t1 MTR_7g063870 52.459 61 29 0 1 61 20 80 5.98e-14 72.0
MS.gene055262.t1 MTR_7g063870 54.237 59 27 0 162 220 99 157 9.30e-13 68.6
MS.gene055262.t1 MTR_1g115450 42.169 83 43 2 13 95 8 85 9.59e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055262.t1 AT5G01120 33.470 487 287 11 13 470 10 488 1.65e-65 219
MS.gene055262.t1 AT5G01150 30.661 499 289 11 14 476 11 488 1.36e-60 206
MS.gene055262.t1 AT3G09140 32.157 510 286 13 6 473 4 495 3.60e-60 205
MS.gene055262.t1 AT3G09140 30.483 538 286 14 6 473 4 523 4.78e-55 192
MS.gene055262.t1 AT3G09140 24.701 251 143 7 11 241 305 529 3.82e-12 68.9
MS.gene055262.t1 AT5G01130 29.960 494 266 14 13 478 10 451 6.64e-53 185
MS.gene055262.t1 AT5G01130 25.229 218 150 6 256 465 9 221 8.41e-12 67.4
MS.gene055262.t1 AT5G01140 29.388 490 295 11 5 478 4 458 4.45e-51 180
MS.gene055262.t1 AT3G09110 33.851 322 189 5 10 317 7 318 1.21e-50 176
MS.gene055262.t1 AT5G43240 28.831 496 296 10 13 467 10 489 3.88e-48 173
MS.gene055262.t1 AT5G43240 28.831 496 296 10 13 467 10 489 3.88e-48 173
MS.gene055262.t1 AT5G43240 28.831 496 296 10 13 467 10 489 3.88e-48 173
MS.gene055262.t1 AT3G09120 35.077 325 170 8 11 310 5 313 9.84e-48 167
MS.gene055262.t1 AT3G09120 27.500 240 138 7 251 465 1 229 1.54e-12 68.9
MS.gene055262.t1 AT5G37320 28.711 512 282 17 9 473 6 481 4.12e-38 145
MS.gene055262.t1 AT5G43240 27.628 333 201 9 163 467 25 345 1.03e-18 88.2

Find 85 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCAAATATT+TGG 0.122085 7.4:-41455725 MS.gene055262:CDS
CCACCTGTTTGTAATTATTA+TGG 0.205658 7.4:-41455542 MS.gene055262:CDS
CATCCGATGATGTCAAATAT+TGG 0.288315 7.4:+41455639 None:intergenic
CAAACAGGTGGTTGAAGAAT+TGG 0.296733 7.4:+41455554 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7.4:-41455669 MS.gene055262:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.4:+41455341 None:intergenic
TTTAGTCTGTTCCAGGAGTT+TGG 0.334756 7.4:-41456118 MS.gene055262:CDS
TGCGAGCCAAACCATTTGTT+AGG 0.349126 7.4:+41455127 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.362521 7.4:-41455348 MS.gene055262:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.364093 7.4:-41455347 MS.gene055262:CDS
TACAAGCTTTAGTCTGTTCC+AGG 0.364150 7.4:-41456125 MS.gene055262:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41456639 None:intergenic
AACCATCCCTTGAGAGTTCA+AGG 0.367767 7.4:-41455892 MS.gene055262:CDS
CAAATTTGTCAAGGTTGACT+TGG 0.376944 7.4:+41455928 None:intergenic
TGCACCATTTACAAATCCTT+GGG 0.383003 7.4:+41456201 None:intergenic
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.4:-41456542 MS.gene055262:CDS
AACTCCCCTTAATGATTTGA+AGG 0.395649 7.4:-41455306 MS.gene055262:CDS
TTATCTAATGTGATGATTCC+TGG 0.396168 7.4:-41455431 MS.gene055262:CDS
CTTGTATAGTCAATACAGTT+TGG 0.401468 7.4:+41456142 None:intergenic
TTCTTGCTTAACTTTAACTG+TGG 0.402454 7.4:+41455584 None:intergenic
GGGAGAGGTTTAAGGAAAAC+TGG 0.406666 7.4:+41456223 None:intergenic
TGTTCCTTGGGAAGCATCAA+TGG 0.408006 7.4:-41455695 MS.gene055262:CDS
CTGCACCATTTACAAATCCT+TGG 0.408614 7.4:+41456200 None:intergenic
TACGTTGATGAGATCATATC+CGG 0.410635 7.4:+41456289 None:intergenic
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.4:-41456559 MS.gene055262:CDS
TTTGCTTGAGTAGAAGTAGT+AGG 0.416922 7.4:+41456673 None:intergenic
ATCTGCCCTAACAAATGGTT+TGG 0.417279 7.4:-41455133 MS.gene055262:CDS
ATTTGGAGGGACTTGTTCCT+TGG 0.422747 7.4:-41455708 MS.gene055262:CDS
GTAGTGTCTTAACATATTGA+AGG 0.434262 7.4:-41455172 MS.gene055262:intron
TATAGTCAATACAGTTTGGC+TGG 0.437109 7.4:+41456146 None:intergenic
TAATCTTCAGCCGAGTTGAT+TGG 0.441193 7.4:+41456397 None:intergenic
CCTGGTGATGGTTATGTAAA+GGG 0.442731 7.4:-41455413 MS.gene055262:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.447416 7.4:-41456607 MS.gene055262:CDS
CTCTAATTGCTGCTATAATC+CGG 0.452298 7.4:-41456308 MS.gene055262:CDS
AAATATAAATGTCGATGTAC+TGG 0.454489 7.4:-41456259 MS.gene055262:CDS
CAACCATAATAATTACAAAC+AGG 0.468189 7.4:+41455539 None:intergenic
TCTGAATGTCAATAAAGAAA+AGG 0.471330 7.4:-41456062 MS.gene055262:intron
GTCAATACAGTTTGGCTGGA+TGG 0.472653 7.4:+41456150 None:intergenic
CTTGTTTGCAGAAGCAGGTA+AGG 0.477534 7.4:-41456602 MS.gene055262:CDS
TCGCATGCTAACTGAAGTTA+AGG 0.479595 7.4:-41455109 MS.gene055262:CDS
TCAACATCTGCCCTAACAAA+TGG 0.480143 7.4:-41455138 MS.gene055262:CDS
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7.4:+41455350 None:intergenic
AGTTATAACTATTGGCATCA+AGG 0.496598 7.4:-41455279 MS.gene055262:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.4:-41455743 MS.gene055262:CDS
TTTGGAGGGACTTGTTCCTT+GGG 0.497730 7.4:-41455707 MS.gene055262:CDS
AACAAGTTATTGTATGCTCA+AGG 0.499394 7.4:-41455797 MS.gene055262:CDS
TCTTGCTTAACTTTAACTGT+GGG 0.513623 7.4:+41455585 None:intergenic
ATTATAGCAGCAATTAGAGT+TGG 0.518052 7.4:+41456312 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.4:-41455628 MS.gene055262:CDS
GGAATTGTTCAAATATTTGG+AGG 0.521097 7.4:-41455722 MS.gene055262:CDS
GCGAGCCAAACCATTTGTTA+GGG 0.525315 7.4:+41455128 None:intergenic
AACCTTGAACTCTCAAGGGA+TGG 0.527200 7.4:+41455890 None:intergenic
TCGCATGTGAAGCACTTTGT+TGG 0.533117 7.4:+41456337 None:intergenic
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.4:+41455389 None:intergenic
TAACTAGCTTCAGAATGACT+TGG 0.549715 7.4:+41455834 None:intergenic
AGAAGCAGGTAAGGACTTTG+TGG 0.551445 7.4:-41456593 MS.gene055262:CDS
TCCTGGTGATGGTTATGTAA+AGG 0.556342 7.4:-41455414 MS.gene055262:CDS
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.4:-41456086 MS.gene055262:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7.4:-41455642 MS.gene055262:CDS
GGTAGAGAAGGAATCTAGCA+TGG 0.576047 7.4:-41456521 MS.gene055262:CDS
GAATTGTTCAAATATTTGGA+GGG 0.576322 7.4:-41455721 MS.gene055262:CDS
CCCTTTACATAACCATCACC+AGG 0.576971 7.4:+41455413 None:intergenic
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.4:-41456533 MS.gene055262:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.4:+41456544 None:intergenic
TACTACTTCTACTCAAGCAA+AGG 0.586466 7.4:-41456671 MS.gene055262:CDS
GTAGAGAAGGAATCTAGCAT+GGG 0.592587 7.4:-41456520 MS.gene055262:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.4:+41456534 None:intergenic
TTTAACTGTGGGGCAATGCG+AGG 0.601228 7.4:+41455596 None:intergenic
ATTTGAACAATTCCACCCAA+AGG 0.615231 7.4:+41455731 None:intergenic
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.4:-41456476 MS.gene055262:CDS
GAGGTTTAAGGAAAACTGGA+AGG 0.631369 7.4:+41456227 None:intergenic
ACAAGTTATTGTATGCTCAA+GGG 0.631934 7.4:-41455796 MS.gene055262:CDS
CAATCCATTGATGCTTCCCA+AGG 0.636233 7.4:+41455691 None:intergenic
CCATAATAATTACAAACAGG+TGG 0.643844 7.4:+41455542 None:intergenic
CTTGCTTAACTTTAACTGTG+GGG 0.646219 7.4:+41455586 None:intergenic
AGCATGGGGCAAGTTACACT+CGG 0.647147 7.4:-41456505 MS.gene055262:CDS
GCACCATTTACAAATCCTTG+GGG 0.647998 7.4:+41456202 None:intergenic
AATGTGATGATTCCTGGTGA+TGG 0.650008 7.4:-41455425 MS.gene055262:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.650226 7.4:-41456460 MS.gene055262:CDS
GCTTCTACAACCAATCAACT+CGG 0.664716 7.4:-41456407 MS.gene055262:CDS
AGGTTTAAGGAAAACTGGAA+GGG 0.668140 7.4:+41456228 None:intergenic
CACCATTTACAAATCCTTGG+GGG 0.670144 7.4:+41456203 None:intergenic
TAGAGAAGGAATCTAGCATG+GGG 0.721111 7.4:-41456519 MS.gene055262:CDS
TATAACTATTGGCATCAAGG+AGG 0.725061 7.4:-41455276 MS.gene055262:intron
TGAAGGTTGTATGTCTACTG+AGG 0.749587 7.4:-41456443 MS.gene055262:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGAAAAAGTTATAACTAT+TGG - chr7.4:41456490-41456509 MS.gene055262:CDS 20.0%
!!! ATTCATTTTGAAATCAAATC+TGG - chr7.4:41456292-41456311 MS.gene055262:CDS 20.0%
!!! GTGTGATTTTAAAATTGTTA+AGG - chr7.4:41455916-41455935 MS.gene055262:CDS 20.0%
!!! TTTTTCCTTCAAATCATTAA+GGG + chr7.4:41456479-41456498 None:intergenic 20.0%
! AAACCAATATTTGACATCAT+CGG - chr7.4:41456135-41456154 MS.gene055262:CDS 25.0%
! AAATATAAATGTCGATGTAC+TGG - chr7.4:41455518-41455537 MS.gene055262:CDS 25.0%
! CAACCATAATAATTACAAAC+AGG + chr7.4:41456241-41456260 None:intergenic 25.0%
! GAATTGTTCAAATATTTGGA+GGG - chr7.4:41456056-41456075 MS.gene055262:intron 25.0%
! TCTGAATGTCAATAAAGAAA+AGG - chr7.4:41455715-41455734 MS.gene055262:CDS 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41455143-41455162 MS.gene055262:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.4:41456030-41456049 MS.gene055262:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.4:41456031-41456050 MS.gene055262:intron 25.0%
!! CTTTTTCCTTCAAATCATTA+AGG + chr7.4:41456480-41456499 None:intergenic 25.0%
!! TTTTCCTTCAAATCATTAAG+GGG + chr7.4:41456478-41456497 None:intergenic 25.0%
!!! ACCTTGACAAATTTGTTTTT+AGG - chr7.4:41455857-41455876 MS.gene055262:CDS 25.0%
!!! CCTTGACAAATTTGTTTTTA+GGG - chr7.4:41455858-41455877 MS.gene055262:CDS 25.0%
AAACTCACTCTATAAAAGTG+TGG - chr7.4:41455301-41455320 MS.gene055262:CDS 30.0%
AACAAGTTATTGTATGCTCA+AGG - chr7.4:41455980-41455999 MS.gene055262:intron 30.0%
ACAAGTTATTGTATGCTCAA+GGG - chr7.4:41455981-41456000 MS.gene055262:intron 30.0%
AGTTATAACTATTGGCATCA+AGG - chr7.4:41456498-41456517 MS.gene055262:CDS 30.0%
ATTATAGCAGCAATTAGAGT+TGG + chr7.4:41455468-41455487 None:intergenic 30.0%
CCACCTGTTTGTAATTATTA+TGG - chr7.4:41456235-41456254 MS.gene055262:CDS 30.0%
CCATAATAATTACAAACAGG+TGG + chr7.4:41456238-41456257 None:intergenic 30.0%
CCCTAAAAACAAATTTGTCA+AGG + chr7.4:41455861-41455880 None:intergenic 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.4:41455638-41455657 None:intergenic 30.0%
GGAATTGTTCAAATATTTGG+AGG - chr7.4:41456055-41456074 MS.gene055262:intron 30.0%
GGTGGAATTGTTCAAATATT+TGG - chr7.4:41456052-41456071 MS.gene055262:intron 30.0%
GTAGTGTCTTAACATATTGA+AGG - chr7.4:41456605-41456624 MS.gene055262:CDS 30.0%
TCTTGCTTAACTTTAACTGT+GGG + chr7.4:41456195-41456214 None:intergenic 30.0%
TTATCTAATGTGATGATTCC+TGG - chr7.4:41456346-41456365 MS.gene055262:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41455141-41455160 None:intergenic 30.0%
TTCTTGCTTAACTTTAACTG+TGG + chr7.4:41456196-41456215 None:intergenic 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7.4:41456108-41456127 MS.gene055262:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.4:41456396-41456415 MS.gene055262:CDS 30.0%
! TAACCACTACTGTTTTATAC+AGG - chr7.4:41455796-41455815 MS.gene055262:CDS 30.0%
AAAGCTGAAATTGGAGTCAA+TGG + chr7.4:41456430-41456449 None:intergenic 35.0%
AACTCCCCTTAATGATTTGA+AGG - chr7.4:41456471-41456490 MS.gene055262:CDS 35.0%
AGAAAAACCTTGAACTCTCA+AGG + chr7.4:41455895-41455914 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.4:41455218-41455237 MS.gene055262:intron 35.0%
AGGTTTAAGGAAAACTGGAA+GGG + chr7.4:41455552-41455571 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.4:41456439-41456458 None:intergenic 35.0%
ATTTGAACAATTCCACCCAA+AGG + chr7.4:41456049-41456068 None:intergenic 35.0%
CAAATTTGTCAAGGTTGACT+TGG + chr7.4:41455852-41455871 None:intergenic 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7.4:41456141-41456160 None:intergenic 35.0%
CTCTAATTGCTGCTATAATC+CGG - chr7.4:41455469-41455488 MS.gene055262:CDS 35.0%
CTTGCTTAACTTTAACTGTG+GGG + chr7.4:41456194-41456213 None:intergenic 35.0%
GAAAAACCTTGAACTCTCAA+GGG + chr7.4:41455894-41455913 None:intergenic 35.0%
GTACCTGTATAAAACAGTAG+TGG + chr7.4:41455802-41455821 None:intergenic 35.0%
TACTACTTCTACTCAAGCAA+AGG - chr7.4:41455106-41455125 MS.gene055262:CDS 35.0%
TATAACTATTGGCATCAAGG+AGG - chr7.4:41456501-41456520 MS.gene055262:CDS 35.0%
TATAGTCAATACAGTTTGGC+TGG + chr7.4:41455634-41455653 None:intergenic 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7.4:41456391-41456410 None:intergenic 35.0%
TGCACCATTTACAAATCCTT+GGG + chr7.4:41455579-41455598 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.4:41455679-41455698 MS.gene055262:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.4:41456430-41456449 MS.gene055262:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7.4:41456034-41456053 MS.gene055262:intron 35.0%
TTTGCTTGAGTAGAAGTAGT+AGG + chr7.4:41455107-41455126 None:intergenic 35.0%
! ATTGACTCCAATTTCAGCTT+TGG - chr7.4:41456429-41456448 MS.gene055262:CDS 35.0%
! CATTAAGGGGAGTTTTCAAT+CGG + chr7.4:41456465-41456484 None:intergenic 35.0%
! TAACTAGCTTCAGAATGACT+TGG + chr7.4:41455946-41455965 None:intergenic 35.0%
! TACGTTGATGAGATCATATC+CGG + chr7.4:41455491-41455510 None:intergenic 35.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.4:41455236-41455255 None:intergenic 40.0%
AATGTGATGATTCCTGGTGA+TGG - chr7.4:41456352-41456371 MS.gene055262:CDS 40.0%
ATCTGCCCTAACAAATGGTT+TGG - chr7.4:41456644-41456663 MS.gene055262:CDS 40.0%
CAAACAGGTGGTTGAAGAAT+TGG + chr7.4:41456226-41456245 None:intergenic 40.0%
CACCATTTACAAATCCTTGG+GGG + chr7.4:41455577-41455596 None:intergenic 40.0%
CTGCACCATTTACAAATCCT+TGG + chr7.4:41455580-41455599 None:intergenic 40.0%
GAGGTTTAAGGAAAACTGGA+AGG + chr7.4:41455553-41455572 None:intergenic 40.0%
GCACCATTTACAAATCCTTG+GGG + chr7.4:41455578-41455597 None:intergenic 40.0%
GCTTCTACAACCAATCAACT+CGG - chr7.4:41455370-41455389 MS.gene055262:CDS 40.0%
GTAGAGAAGGAATCTAGCAT+GGG - chr7.4:41455257-41455276 MS.gene055262:intron 40.0%
TAGAGAAGGAATCTAGCATG+GGG - chr7.4:41455258-41455277 MS.gene055262:intron 40.0%
TCAACATCTGCCCTAACAAA+TGG - chr7.4:41456639-41456658 MS.gene055262:CDS 40.0%
TCGCATGCTAACTGAAGTTA+AGG - chr7.4:41456668-41456687 MS.gene055262:CDS 40.0%
TGAAGGTTGTATGTCTACTG+AGG - chr7.4:41455334-41455353 MS.gene055262:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.4:41455235-41455254 MS.gene055262:intron 40.0%
TTTAGTCTGTTCCAGGAGTT+TGG - chr7.4:41455659-41455678 MS.gene055262:CDS 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7.4:41455695-41455714 None:intergenic 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7.4:41455694-41455713 None:intergenic 40.0%
! TACAAGCTTTAGTCTGTTCC+AGG - chr7.4:41455652-41455671 MS.gene055262:CDS 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.4:41455170-41455189 MS.gene055262:CDS 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG - chr7.4:41456364-41456383 MS.gene055262:CDS 40.0%
!! TAATCTTCAGCCGAGTTGAT+TGG + chr7.4:41455383-41455402 None:intergenic 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG - chr7.4:41456363-41456382 MS.gene055262:CDS 40.0%
!!! GGTTTTTTATGCCAAACTCC+TGG + chr7.4:41455673-41455692 None:intergenic 40.0%
AACCATCCCTTGAGAGTTCA+AGG - chr7.4:41455885-41455904 MS.gene055262:CDS 45.0%
AACCTTGAACTCTCAAGGGA+TGG + chr7.4:41455890-41455909 None:intergenic 45.0%
AGAAGCAGGTAAGGACTTTG+TGG - chr7.4:41455184-41455203 MS.gene055262:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.4:41455317-41455336 MS.gene055262:CDS 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7.4:41456089-41456108 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7.4:41456149-41456168 MS.gene055262:CDS 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.4:41455244-41455263 MS.gene055262:intron 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7.4:41455691-41455710 MS.gene055262:CDS 45.0%
CCCTTTACATAACCATCACC+AGG + chr7.4:41456367-41456386 None:intergenic 45.0%
CTCCCCCAAGGATTTGTAAA+TGG - chr7.4:41455572-41455591 MS.gene055262:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.4:41455246-41455265 None:intergenic 45.0%
CTTGTTTGCAGAAGCAGGTA+AGG - chr7.4:41455175-41455194 MS.gene055262:intron 45.0%
GGGAGAGGTTTAAGGAAAAC+TGG + chr7.4:41455557-41455576 None:intergenic 45.0%
GGTAGAGAAGGAATCTAGCA+TGG - chr7.4:41455256-41455275 MS.gene055262:intron 45.0%
GTCAATACAGTTTGGCTGGA+TGG + chr7.4:41455630-41455649 None:intergenic 45.0%
TGCGAGCCAAACCATTTGTT+AGG + chr7.4:41456653-41456672 None:intergenic 45.0%
TTTACAAATCCTTGGGGGAG+AGG + chr7.4:41455572-41455591 None:intergenic 45.0%
! ATTTGGAGGGACTTGTTCCT+TGG - chr7.4:41456069-41456088 MS.gene055262:CDS 45.0%
! GCGAGCCAAACCATTTGTTA+GGG + chr7.4:41456652-41456671 None:intergenic 45.0%
! TCGCATGTGAAGCACTTTGT+TGG + chr7.4:41455443-41455462 None:intergenic 45.0%
! TTTGGAGGGACTTGTTCCTT+GGG - chr7.4:41456070-41456089 MS.gene055262:CDS 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7.4:41456082-41456101 MS.gene055262:CDS 45.0%
AGCATGGGGCAAGTTACACT+CGG - chr7.4:41455272-41455291 MS.gene055262:intron 50.0%
ATCCTTGGGGGAGAGGTTTA+AGG + chr7.4:41455565-41455584 None:intergenic 50.0%
TTCCTTAAACCTCTCCCCCA+AGG - chr7.4:41455560-41455579 MS.gene055262:CDS 50.0%
TTTAACTGTGGGGCAATGCG+AGG + chr7.4:41456184-41456203 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41455098 41456701 41455098 ID=MS.gene055262
chr7.4 mRNA 41455098 41456701 41455098 ID=MS.gene055262.t1;Parent=MS.gene055262
chr7.4 exon 41456063 41456701 41456063 ID=MS.gene055262.t1.exon1;Parent=MS.gene055262.t1
chr7.4 CDS 41456063 41456701 41456063 ID=cds.MS.gene055262.t1;Parent=MS.gene055262.t1
chr7.4 exon 41455277 41455981 41455277 ID=MS.gene055262.t1.exon2;Parent=MS.gene055262.t1
chr7.4 CDS 41455277 41455981 41455277 ID=cds.MS.gene055262.t1;Parent=MS.gene055262.t1
chr7.4 exon 41455098 41455190 41455098 ID=MS.gene055262.t1.exon3;Parent=MS.gene055262.t1
chr7.4 CDS 41455098 41455190 41455098 ID=cds.MS.gene055262.t1;Parent=MS.gene055262.t1
Gene Sequence

>MS.gene055262

ATGGCTCCTACTACTTCTACTCAAGCAAAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGTAAGGACTTTGTGGATATTATCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATGGGGCAAGTTACACTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGAAGGTTGTATGTCTACTGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCGGCTGAAGATTATTGCAGTGCTCTTAAATTCAACATTGATGACACTCAACCAACAAAGTGCTTCACATGCGATGCCAACTCTAATTGCTGCTATAATCCGGATATGATCTCATCAACGTATAAAGATAAATATAAATGTCGATGTACTGGTTCTTTTACCCTTCCAGTTTTCCTTAAACCTCTCCCCCAAGGATTTGTAAATGGTGCAGCTACTTTTGTCATAACTGATGATCTCACCATCCAGCCAAACTGTATTGACTATACAAGCTTTAGTCTGTTCCAGGAGTTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCAATAAAGAAAAGGTTTAGTATTTGAATACTGCGTTTGTTTATAACATCTCTCTTAAATTTTTGATTGATTATAACCACTACTGTTTTATACAGGTACTTGATTTGCTAAAGTGTTCTTTGTTTTCCAAGTCAACCTTGACAAATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGTTCAAGGTTTTTCTCGTGTGATTTTAAAATTGTTAAGGATATCCAAGTCATTCTGAAGCTAGTTATTAGAAAATCAGATAACAAGTTATTGTATGCTCAAGGGCATCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCAAATATTTGGAGGGACTTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTCATCCTCGCATTGCCCCACAGTTAAAGTTAAGCAAGAAGATATTACCAATTCTTCAACCACCTGTTTGTAATTATTATGGTTGTTTTGATAGTTCTGTTAAAACTAATAAAATAATTCATTTTGAAATCAAATCTGGAACATATGTAACAAATTTGAAGAAAATGAATTTATCTAATGTGATGATTCCTGGTGATGGTTATGTAAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAAAACTCCCCTTAATGATTTGAAGGAAAAAGTTATAACTATTGGCATCAAGGAGGTAAATGCATAGTAAAATTCTTAATATAGTTATAATCTTTACATTATTTATAAATTGCTTATGTTTATCTTCTTGTCTCGTTGTAGTGTCTTAACATATTGAAGGCTTCTTTGACATCAACATCTGCCCTAACAAATGGTTTGGCTCGCATGCTAACTGAAGTTAAGGACGAGAAATGA
Protein sequence

>MS.gene055262.t1

MAPTTSTQAKEHVSLKLLLNENGNKVLFAEAGKDFVDIICSFLTMPLGTIARLVEKESSMGQVTLGCLNSLYKSVADLDEGCMSTEAIKQMLLQPINSAEDYCSALKFNIDDTQPTKCFTCDANSNCCYNPDMISSTYKDKYKCRCTGSFTLPVFLKPLPQGFVNGAATFVITDDLTIQPNCIDYTSFSLFQEFGIKNPSSVKEVVLNVNKEKVLDLLKCSLFSKSTLTNLFLGKKPSLESSRFFSCDFKIVKDIQVILKLVIRKSDNKLLYAQGHQDFANLLLSFLTFPLGGIVQIFGGTCSLGSINGLYKSIVDLDENQYLTSSDAKNRLVHPRIAPQLKLSKKILPILQPPVCNYYGCFDSSVKTNKIIHFEIKSGTYVTNLKKMNLSNVMIPGDGYVKGPAMYFATDDLVVAPLTPISALGLLNRLKTPLNDLKEKVITIGIKECLNILKASLTSTSALTNGLARMLTEVKDEK