AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94767

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94767.t1 MTR_7g066400 78.782 476 35 4 1 439 1 447 0.0 723
MS.gene94767.t1 MTR_7g066350 60.600 467 137 8 5 436 2 456 6.24e-178 505
MS.gene94767.t1 MTR_7g066340 59.041 459 144 6 1 425 1 449 1.41e-175 500
MS.gene94767.t1 MTR_1g041315 55.992 484 148 7 12 438 14 489 2.50e-174 497
MS.gene94767.t1 MTR_7g066260 55.965 461 161 6 2 425 3 458 9.49e-168 481
MS.gene94767.t1 MTR_7g066570 52.966 472 155 9 13 426 15 477 4.56e-150 438
MS.gene94767.t1 MTR_7g066570 28.509 228 142 7 12 228 257 474 1.19e-14 76.3
MS.gene94767.t1 MTR_7g012680 51.982 454 152 10 12 425 14 441 9.27e-138 403
MS.gene94767.t1 MTR_7g066360 52.097 453 177 10 2 425 4 445 9.60e-136 399
MS.gene94767.t1 MTR_7g066290 49.351 462 165 7 3 429 6 433 2.08e-128 378
MS.gene94767.t1 MTR_7g066310 50.446 448 115 9 12 426 7 380 1.58e-127 375
MS.gene94767.t1 MTR_7g058710 44.785 489 190 8 1 425 1 473 2.36e-126 375
MS.gene94767.t1 MTR_7g058710 24.800 250 163 8 3 240 244 480 7.39e-13 70.5
MS.gene94767.t1 MTR_7g066580 42.887 478 178 9 18 431 1 447 8.20e-115 344
MS.gene94767.t1 MTR_7g066580 26.230 244 138 6 12 230 215 441 6.05e-14 73.9
MS.gene94767.t1 MTR_7g066430 40.984 488 212 10 9 426 1 482 1.26e-112 340
MS.gene94767.t1 MTR_7g066430 28.390 236 147 7 7 228 252 479 1.07e-17 85.5
MS.gene94767.t1 MTR_1g014060 46.890 418 163 9 21 425 9 380 7.72e-109 327
MS.gene94767.t1 MTR_7g066410 39.376 513 211 10 12 434 10 512 6.04e-106 323
MS.gene94767.t1 MTR_7g058700 44.676 432 162 11 26 426 533 918 8.84e-100 318
MS.gene94767.t1 MTR_7g062300 38.589 482 228 12 1 426 1 470 5.62e-95 294
MS.gene94767.t1 MTR_7g062300 30.303 231 148 7 6 233 252 472 9.69e-17 82.4
MS.gene94767.t1 MTR_7g066480 44.048 420 211 10 12 425 16 417 8.80e-95 292
MS.gene94767.t1 MTR_2g029400 41.136 440 177 9 12 418 14 404 1.29e-94 291
MS.gene94767.t1 MTR_7g062280 37.778 495 216 13 12 431 10 487 3.93e-94 292
MS.gene94767.t1 MTR_7g062280 28.692 237 138 8 11 233 265 484 9.10e-18 85.9
MS.gene94767.t1 MTR_7g063660 37.526 477 219 14 12 426 9 468 2.17e-92 287
MS.gene94767.t1 MTR_7g063880 38.241 489 219 13 1 431 1 464 1.40e-89 280
MS.gene94767.t1 MTR_7g066490 42.584 418 208 11 11 425 15 403 4.97e-87 271
MS.gene94767.t1 MTR_7g063900 38.900 491 221 11 1 425 1 478 6.63e-87 273
MS.gene94767.t1 MTR_7g063920 36.617 467 204 7 12 431 11 432 5.45e-83 262
MS.gene94767.t1 MTR_7g063920 27.632 228 136 8 11 228 216 424 2.80e-15 77.8
MS.gene94767.t1 MTR_7g063890 39.337 483 209 13 12 425 27 494 6.40e-82 261
MS.gene94767.t1 MTR_7g063820 36.475 488 235 13 1 426 1 475 6.96e-79 253
MS.gene94767.t1 MTR_3g007740 37.582 455 218 13 12 425 9 438 1.41e-78 251
MS.gene94767.t1 MTR_3g007740 27.727 220 131 7 11 228 243 436 2.74e-12 68.6
MS.gene94767.t1 MTR_7g063830 36.245 458 225 12 13 431 11 440 2.51e-78 250
MS.gene94767.t1 MTR_7g063840 36.140 487 237 13 1 431 1 469 6.20e-78 250
MS.gene94767.t1 MTR_4g019310 33.203 512 241 15 1 431 1 492 1.24e-75 244
MS.gene94767.t1 MTR_3g065200 34.375 448 209 8 12 416 3 408 1.38e-74 241
MS.gene94767.t1 MTR_4g017410 34.686 493 236 16 5 425 2 480 1.66e-67 224
MS.gene94767.t1 MTR_7g063670 34.066 455 235 12 13 425 16 447 1.09e-66 220
MS.gene94767.t1 MTR_7g063670 28.000 225 133 9 6 228 248 445 1.53e-14 75.9
MS.gene94767.t1 MTR_4g017610 31.857 474 250 12 14 426 15 476 9.60e-65 216
MS.gene94767.t1 MTR_4g019340 32.770 473 240 10 13 417 39 501 1.34e-63 213
MS.gene94767.t1 MTR_4g019340 28.251 223 128 7 11 223 302 502 1.13e-14 76.3
MS.gene94767.t1 MTR_4g017440 33.535 495 236 16 13 425 15 498 8.64e-63 211
MS.gene94767.t1 MTR_7g066280 52.294 218 76 4 91 305 1 193 2.01e-59 200
MS.gene94767.t1 MTR_7g066280 55.556 135 53 1 303 437 271 398 6.17e-39 145
MS.gene94767.t1 MTR_7g066280 27.419 248 137 8 21 239 159 392 3.04e-15 77.8
MS.gene94767.t1 MTR_4g017830 38.125 320 173 10 1 305 1 310 3.57e-55 191
MS.gene94767.t1 MTR_4g017830 47.826 69 36 0 357 425 429 497 3.12e-12 68.9
MS.gene94767.t1 MTR_4g017470 30.495 505 224 13 13 432 13 475 5.49e-54 187
MS.gene94767.t1 MTR_7g066680 36.667 300 103 5 211 425 37 334 2.15e-47 166
MS.gene94767.t1 MTR_7g066680 27.700 213 135 8 10 213 84 286 4.95e-14 73.6
MS.gene94767.t1 MTR_4g017550 30.886 463 233 17 39 425 18 469 8.59e-47 168
MS.gene94767.t1 MTR_4g017550 29.075 227 125 7 21 227 256 466 1.04e-11 67.0
MS.gene94767.t1 MTR_7g062270 46.746 169 88 2 13 180 11 178 7.07e-41 150
MS.gene94767.t1 MTR_2g067310 47.093 172 52 4 23 194 58 190 3.43e-35 130
MS.gene94767.t1 MTR_7g066390 67.010 97 30 1 331 425 22 118 1.12e-33 124
MS.gene94767.t1 MTR_7g063720 35.885 209 92 4 262 431 23 228 2.36e-32 123
MS.gene94767.t1 MTR_7g063720 27.354 223 135 6 10 228 21 220 3.76e-18 84.0
MS.gene94767.t1 MTR_8g023240 29.412 306 188 10 1 301 29 311 1.01e-29 122
MS.gene94767.t1 MTR_8g445860 29.437 231 146 4 12 232 13 236 7.60e-24 100
MS.gene94767.t1 MTR_8g445860 44.444 72 39 1 352 422 160 231 2.33e-11 63.9
MS.gene94767.t1 MTR_1g115440 31.381 239 134 7 12 232 11 237 2.05e-23 98.6
MS.gene94767.t1 MTR_0150s0010 29.741 232 147 3 12 232 10 236 1.33e-21 93.6
MS.gene94767.t1 MTR_0150s0010 41.026 78 45 1 346 422 154 231 3.72e-11 63.5
MS.gene94767.t1 MTR_7g063850 27.303 304 142 9 184 431 4 284 7.01e-21 92.8
MS.gene94767.t1 MTR_7g063690 27.857 280 129 9 13 289 13 222 9.14e-21 91.3
MS.gene94767.t1 MTR_4g019240 46.154 104 44 4 13 108 14 113 2.16e-19 85.9
MS.gene94767.t1 MTR_7g100420 28.676 272 125 6 211 425 134 393 7.37e-18 85.5
MS.gene94767.t1 MTR_7g100420 59.322 59 20 1 13 67 40 98 1.75e-12 68.9
MS.gene94767.t1 MTR_7g100420 26.293 232 155 6 4 228 169 391 8.12e-12 67.0
MS.gene94767.t1 MTR_1g115455 28.846 260 129 9 5 235 2 234 6.85e-16 77.0
MS.gene94767.t1 MTR_7g063760 51.613 62 29 1 365 425 2 63 3.64e-15 70.5
MS.gene94767.t1 MTR_1g115450 40.000 85 46 1 12 96 7 86 6.32e-15 72.0
MS.gene94767.t1 MTR_4g019330 31.613 155 93 6 276 425 32 178 1.31e-12 66.6
MS.gene94767.t1 MTR_1g115470 38.614 101 51 2 1 101 1 90 1.74e-12 69.3
MS.gene94767.t1 MTR_0150s0030 38.372 86 47 2 11 95 7 87 7.63e-12 64.7
MS.gene94767.t1 MTR_7g063870 62.500 48 18 0 13 60 32 79 7.97e-12 65.9
MS.gene94767.t1 MTR_8g445910 38.947 95 49 4 12 102 8 97 7.71e-11 62.8
MS.gene94767.t1 MTR_8g044880 38.824 85 46 2 12 95 8 87 8.74e-11 62.8
MS.gene94767.t1 MTR_8g445920 39.241 79 43 1 12 90 10 83 9.05e-11 59.3
MS.gene94767.t1 MTR_8g044890 39.241 79 43 1 12 90 10 83 9.05e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94767.t1 AT5G01120 29.167 480 269 11 13 425 10 485 1.34e-56 195
MS.gene94767.t1 AT5G43240 28.395 486 269 11 13 425 10 489 4.45e-54 188
MS.gene94767.t1 AT5G43240 28.395 486 269 11 13 425 10 489 4.45e-54 188
MS.gene94767.t1 AT5G43240 28.395 486 269 11 13 425 10 489 4.45e-54 188
MS.gene94767.t1 AT5G01150 30.625 480 248 13 15 425 12 475 9.17e-52 182
MS.gene94767.t1 AT5G01130 30.155 451 259 12 12 425 9 440 7.84e-50 176
MS.gene94767.t1 AT3G09140 28.866 485 270 10 12 425 9 489 1.25e-48 173
MS.gene94767.t1 AT3G09140 23.684 228 147 6 10 227 276 486 5.77e-11 64.7
MS.gene94767.t1 AT3G09110 34.155 284 183 3 15 297 12 292 4.47e-48 168
MS.gene94767.t1 AT5G01140 28.261 460 257 9 15 425 12 447 6.32e-47 168
MS.gene94767.t1 AT5G01140 28.070 228 127 7 13 227 241 444 7.28e-15 77.0
MS.gene94767.t1 AT3G09120 32.787 305 188 4 12 306 6 303 2.08e-45 160
MS.gene94767.t1 AT3G09140 27.096 513 271 11 12 425 9 517 3.44e-43 159
MS.gene94767.t1 AT3G09140 23.684 228 147 6 10 227 304 514 7.09e-11 64.7
MS.gene94767.t1 AT5G37320 28.274 481 266 17 11 426 10 476 4.06e-42 155
MS.gene94767.t1 AT5G43240 24.688 320 181 6 164 425 28 345 1.43e-19 90.1

Find 80 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAATCGTTTGGAATTT+TGG 0.040096 7.1:+35828621 MS.gene94767:CDS
CTCTTTCTTCTACATCATTA+AGG 0.157802 7.1:-35829159 None:intergenic
GTCAGACTTTATCTTTAAAA+TGG 0.190168 7.1:+35828574 MS.gene94767:CDS
GATAATTGCATAAGAGAAAA+TGG 0.193662 7.1:+35828185 MS.gene94767:CDS
GATCCCAAATCCCCTATTTC+TGG 0.202846 7.1:+35829031 MS.gene94767:CDS
CTGAGAAATCCTCCAGAAAT+AGG 0.208530 7.1:-35829043 None:intergenic
ATATAAGAATTGTTCCATTA+TGG 0.225141 7.1:-35829377 None:intergenic
CTTTGTCCACCATAAATGTT+AGG 0.244452 7.1:-35827857 None:intergenic
TCCTCCAGAAATAGGGGATT+TGG 0.248070 7.1:-35829035 None:intergenic
TAAGCTTCCATAGAGTTTCT+AGG 0.257151 7.1:-35828098 None:intergenic
AGTCCAATGTCATCAATTTC+TGG 0.262917 7.1:+35829106 MS.gene94767:CDS
CAAAATTCCAAACGATTTCT+TGG 0.266858 7.1:-35828620 None:intergenic
CGGTCTTAGCCTTTCCATAA+TGG 0.298049 7.1:+35829363 MS.gene94767:CDS
AAACTTGTTCCAAGATGATT+AGG 0.308810 7.1:-35828350 None:intergenic
ATTGAGTAGCATTTCTTTGC+AGG 0.317151 7.1:-35828075 None:intergenic
TCTCACCAATCGGTAATATC+TGG 0.340346 7.1:-35828949 None:intergenic
CGTATCTAAAGAGTCAAATA+TGG 0.342580 7.1:+35827974 MS.gene94767:CDS
TGAGAAATCCTCCAGAAATA+GGG 0.353661 7.1:-35829042 None:intergenic
TTTAGACCCAAGAAATCGTT+TGG 0.354287 7.1:+35828613 MS.gene94767:CDS
GGTACTATGCAAGTACATTC+AGG 0.364581 7.1:+35828207 MS.gene94767:CDS
ACTCAATCCTAGAAACTCTA+TGG 0.368526 7.1:+35828091 MS.gene94767:CDS
TCTTTCTTCTACATCATTAA+GGG 0.383547 7.1:-35829158 None:intergenic
CCTCCAGAAATAGGGGATTT+GGG 0.383622 7.1:-35829034 None:intergenic
TTTGTCAGTCCTAATCATCT+TGG 0.384248 7.1:+35828341 MS.gene94767:CDS
AAAATTCCAAACGATTTCTT+GGG 0.400983 7.1:-35828619 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.1:+35828371 MS.gene94767:CDS
GAAGAAAGAGTCATCAGAAT+TGG 0.409170 7.1:+35829172 MS.gene94767:CDS
CAGAGGGCCAACGTCGTTCA+TGG 0.410417 7.1:+35829063 MS.gene94767:CDS
AAGATTGTCAGAAATTATAA+AGG 0.433322 7.1:-35828318 None:intergenic
AATATGGAAGCCGTGAGGTT+TGG 0.437074 7.1:+35827990 MS.gene94767:CDS
ATCTTGATGAGAAGTATCTA+TGG 0.452896 7.1:+35828045 MS.gene94767:CDS
TTTGTCCACCATAAATGTTA+GGG 0.465766 7.1:-35827856 None:intergenic
TCATCCTCACAGAGAAAGAA+AGG 0.495444 7.1:-35828164 None:intergenic
TGCGTATTTAGAAAGAATGA+AGG 0.499246 7.1:+35829132 MS.gene94767:CDS
ATAATTGCATAAGAGAAAAT+GGG 0.506907 7.1:+35828186 MS.gene94767:CDS
CGTTAACATCAGCAAGAAAG+AGG 0.509174 7.1:+35828427 MS.gene94767:CDS
CATTTATGGTGGACAAAGAA+AGG 0.510553 7.1:+35827862 MS.gene94767:CDS
CTTATATCAAAATTATCTGT+AGG 0.514163 7.1:+35829393 MS.gene94767:CDS
CTTTCTTCTACATCATTAAG+GGG 0.514709 7.1:-35829157 None:intergenic
ATTGGTGAGACAAACTCATC+TGG 0.517085 7.1:+35828962 MS.gene94767:CDS
GCCAATGCGTCAGATAATCT+AGG 0.519694 7.1:+35827822 MS.gene94767:CDS
GATGAGTTTGTCTCACCAAT+CGG 0.519751 7.1:-35828959 None:intergenic
ACCTAGATTATCTGACGCAT+TGG 0.523086 7.1:-35827823 None:intergenic
GCTTCTTGACATTACCTCTA+GGG 0.524982 7.1:+35827937 MS.gene94767:CDS
TTGGCATGCATCTTGAACTC+AGG 0.536811 7.1:+35828924 MS.gene94767:CDS
TCAACATCTTCATTGACAAA+CGG 0.538336 7.1:+35829343 MS.gene94767:CDS
AGCTTCTTGACATTACCTCT+AGG 0.539034 7.1:+35827936 MS.gene94767:CDS
TACCATTCCGCTGGGTGGAG+TGG 0.541850 7.1:+35828775 MS.gene94767:CDS
CTTGCCTTTCTTTCTCTGTG+AGG 0.544107 7.1:+35828160 MS.gene94767:CDS
CAAAGGAGACTTTGAGAGCA+AGG 0.550620 7.1:-35828552 None:intergenic
AAAGTTCTATATGCTGAGGC+AGG 0.554367 7.1:+35827888 MS.gene94767:CDS
TTTCTGGAGGATTTCTCAGA+GGG 0.555601 7.1:+35829047 MS.gene94767:CDS
TATTGACTCCAAGCTTCTGA+AGG 0.557959 7.1:-35828379 None:intergenic
TGGCTATTTCATGCCCTGCA+AGG 0.559659 7.1:+35828982 MS.gene94767:CDS
AGAATTGTTCCATTATGGAA+AGG 0.561783 7.1:-35829372 None:intergenic
GTACTATGCAAGTACATTCA+GGG 0.562553 7.1:+35828208 MS.gene94767:CDS
AGACCAGAAATTGATGACAT+TGG 0.564415 7.1:-35829109 None:intergenic
GAGAAATCCTCCAGAAATAG+GGG 0.567664 7.1:-35829041 None:intergenic
GGAGTGGTAATCATGTTTGA+AGG 0.570563 7.1:+35828791 MS.gene94767:CDS
ATCTCATCAGATTCATCGCA+CGG 0.582254 7.1:-35828662 None:intergenic
CCCAAATCCCCTATTTCTGG+AGG 0.587988 7.1:+35829034 MS.gene94767:CDS
TACCACTCCACCCAGCGGAA+TGG 0.593322 7.1:-35828777 None:intergenic
AGTCATCAGAATTGGCGTGA+AGG 0.596722 7.1:+35829180 MS.gene94767:CDS
TTTCTTACCATTCCGCTGGG+TGG 0.597880 7.1:+35828770 MS.gene94767:CDS
CATCAGAATTGGCGTGAAGG+AGG 0.599170 7.1:+35829183 MS.gene94767:CDS
AGACTAAGTGAGCCACAAGT+TGG 0.600780 7.1:+35828905 MS.gene94767:CDS
TCAAGATGCATGCCAACTTG+TGG 0.608242 7.1:-35828917 None:intergenic
ATTTCTGGAGGATTTCTCAG+AGG 0.613319 7.1:+35829046 MS.gene94767:CDS
TTAAAGATAAAGTCTGACAA+AGG 0.614999 7.1:-35828569 None:intergenic
GTTTGTCAATGAAGATGTTG+AGG 0.615216 7.1:-35829341 None:intergenic
GTGCGATGAATCTGATGAGA+TGG 0.616494 7.1:+35828664 MS.gene94767:CDS
GAAGAAAGTTCTATATGCTG+AGG 0.619886 7.1:+35827884 MS.gene94767:CDS
TTGTCCACCATAAATGTTAG+GGG 0.641440 7.1:-35827855 None:intergenic
GCTGATGCTGCCAAACCTCA+CGG 0.652909 7.1:-35828000 None:intergenic
AGGAACCAGATATTACCGAT+TGG 0.659517 7.1:+35828944 MS.gene94767:CDS
TGTCCACCATAAATGTTAGG+GGG 0.661663 7.1:-35827854 None:intergenic
TCAGTCACCATGAACGACGT+TGG 0.688460 7.1:-35829070 None:intergenic
AGTCTAGCAATAGTCCCTAG+AGG 0.713115 7.1:-35827951 None:intergenic
ATGATTACCACTCCACCCAG+CGG 0.746322 7.1:-35828782 None:intergenic
AGTCAAATATGGAAGCCGTG+AGG 0.747088 7.1:+35827985 MS.gene94767:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTGTCAGAAATTATAA+AGG - chr7.1:35828321-35828340 None:intergenic 20.0%
!! ACAATATTTGATTGCATATA+TGG + chr7.1:35829284-35829303 MS.gene94767:intron 20.0%
!! ATAATTGCATAAGAGAAAAT+GGG + chr7.1:35828186-35828205 MS.gene94767:CDS 20.0%
!! ATATAAGAATTGTTCCATTA+TGG - chr7.1:35829380-35829399 None:intergenic 20.0%
!!! TTTAAAATGGAACATTTTGT+TGG + chr7.1:35828587-35828606 MS.gene94767:CDS 20.0%
! AAAATTCCAAACGATTTCTT+GGG - chr7.1:35828622-35828641 None:intergenic 25.0%
! GATAATTGCATAAGAGAAAA+TGG + chr7.1:35828185-35828204 MS.gene94767:CDS 25.0%
! TCTTTCTTCTACATCATTAA+GGG - chr7.1:35829161-35829180 None:intergenic 25.0%
! TTAAAGATAAAGTCTGACAA+AGG - chr7.1:35828572-35828591 None:intergenic 25.0%
!! GTCAGACTTTATCTTTAAAA+TGG + chr7.1:35828574-35828593 MS.gene94767:CDS 25.0%
AGAATTGTTCCATTATGGAA+AGG - chr7.1:35829375-35829394 None:intergenic 30.0%
CAAAATTCCAAACGATTTCT+TGG - chr7.1:35828623-35828642 None:intergenic 30.0%
CGAAAATCCACTACAAAAAA+TGG + chr7.1:35828275-35828294 MS.gene94767:CDS 30.0%
CGTATCTAAAGAGTCAAATA+TGG + chr7.1:35827974-35827993 MS.gene94767:CDS 30.0%
CTCTTTCTTCTACATCATTA+AGG - chr7.1:35829162-35829181 None:intergenic 30.0%
CTTTCTTCTACATCATTAAG+GGG - chr7.1:35829160-35829179 None:intergenic 30.0%
GTTAGATGTTACGAATATGA+TGG - chr7.1:35829266-35829285 None:intergenic 30.0%
TCAACATCTTCATTGACAAA+CGG + chr7.1:35829343-35829362 MS.gene94767:CDS 30.0%
TGCGTATTTAGAAAGAATGA+AGG + chr7.1:35829132-35829151 MS.gene94767:CDS 30.0%
TTTGTCCACCATAAATGTTA+GGG - chr7.1:35827859-35827878 None:intergenic 30.0%
! AAACTTGTTCCAAGATGATT+AGG - chr7.1:35828353-35828372 None:intergenic 30.0%
!! AATCGTTTGGAATTTTGGAT+AGG + chr7.1:35828626-35828645 MS.gene94767:CDS 30.0%
!! ATCTTGATGAGAAGTATCTA+TGG + chr7.1:35828045-35828064 MS.gene94767:CDS 30.0%
!! CAAGAAATCGTTTGGAATTT+TGG + chr7.1:35828621-35828640 MS.gene94767:CDS 30.0%
!! GAACAGATTTTGTTTGTTGA+AGG + chr7.1:35828716-35828735 MS.gene94767:CDS 30.0%
!!! AACAAAGCCATTTTTTGTAG+TGG - chr7.1:35828285-35828304 None:intergenic 30.0%
!!! TCTCTCTTTTTTATGTTGCA+TGG + chr7.1:35828814-35828833 MS.gene94767:intron 30.0%
!!! TCTTTTTTATGATCCTTGCA+GGG - chr7.1:35828998-35829017 None:intergenic 30.0%
!!! TTCTTTTTTATGATCCTTGC+AGG - chr7.1:35828999-35829018 None:intergenic 30.0%
ACTCAATCCTAGAAACTCTA+TGG + chr7.1:35828091-35828110 MS.gene94767:CDS 35.0%
AGGGATCAAAAATGCATTTG+TGG + chr7.1:35828227-35828246 MS.gene94767:CDS 35.0%
AGTCCAATGTCATCAATTTC+TGG + chr7.1:35829106-35829125 MS.gene94767:CDS 35.0%
ATTGAGTAGCATTTCTTTGC+AGG - chr7.1:35828078-35828097 None:intergenic 35.0%
CTTTGTCCACCATAAATGTT+AGG - chr7.1:35827860-35827879 None:intergenic 35.0%
GAAGAAAGAGTCATCAGAAT+TGG + chr7.1:35829172-35829191 MS.gene94767:CDS 35.0%
GAAGAAAGTTCTATATGCTG+AGG + chr7.1:35827884-35827903 MS.gene94767:CDS 35.0%
GTACTATGCAAGTACATTCA+GGG + chr7.1:35828208-35828227 MS.gene94767:CDS 35.0%
GTTTGTCAATGAAGATGTTG+AGG - chr7.1:35829344-35829363 None:intergenic 35.0%
TAAGCTTCCATAGAGTTTCT+AGG - chr7.1:35828101-35828120 None:intergenic 35.0%
TGAGAAATCCTCCAGAAATA+GGG - chr7.1:35829045-35829064 None:intergenic 35.0%
TGATTGCATATATGGTTGCA+GGG + chr7.1:35829292-35829311 MS.gene94767:intron 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.1:35828371-35828390 MS.gene94767:CDS 35.0%
TTGATTGCATATATGGTTGC+AGG + chr7.1:35829291-35829310 MS.gene94767:intron 35.0%
TTGTCCACCATAAATGTTAG+GGG - chr7.1:35827858-35827877 None:intergenic 35.0%
TTTAGACCCAAGAAATCGTT+TGG + chr7.1:35828613-35828632 MS.gene94767:CDS 35.0%
TTTGTCAGTCCTAATCATCT+TGG + chr7.1:35828341-35828360 MS.gene94767:CDS 35.0%
! AGACCAGAAATTGATGACAT+TGG - chr7.1:35829112-35829131 None:intergenic 35.0%
!! CATTTATGGTGGACAAAGAA+AGG + chr7.1:35827862-35827881 MS.gene94767:CDS 35.0%
!! TTTGGAATTTTGGATAGGAG+AGG + chr7.1:35828631-35828650 MS.gene94767:CDS 35.0%
AAAGTTCTATATGCTGAGGC+AGG + chr7.1:35827888-35827907 MS.gene94767:CDS 40.0%
ACCTAGATTATCTGACGCAT+TGG - chr7.1:35827826-35827845 None:intergenic 40.0%
AGCTTCTTGACATTACCTCT+AGG + chr7.1:35827936-35827955 MS.gene94767:CDS 40.0%
AGGAACCAGATATTACCGAT+TGG + chr7.1:35828944-35828963 MS.gene94767:CDS 40.0%
ATCTCATCAGATTCATCGCA+CGG - chr7.1:35828665-35828684 None:intergenic 40.0%
ATTGGTGAGACAAACTCATC+TGG + chr7.1:35828962-35828981 MS.gene94767:CDS 40.0%
CGTTAACATCAGCAAGAAAG+AGG + chr7.1:35828427-35828446 MS.gene94767:CDS 40.0%
CTGAGAAATCCTCCAGAAAT+AGG - chr7.1:35829046-35829065 None:intergenic 40.0%
GAGAAATCCTCCAGAAATAG+GGG - chr7.1:35829044-35829063 None:intergenic 40.0%
GATGAGTTTGTCTCACCAAT+CGG - chr7.1:35828962-35828981 None:intergenic 40.0%
GCTTCTTGACATTACCTCTA+GGG + chr7.1:35827937-35827956 MS.gene94767:CDS 40.0%
GGAGTGGTAATCATGTTTGA+AGG + chr7.1:35828791-35828810 MS.gene94767:CDS 40.0%
GGTACTATGCAAGTACATTC+AGG + chr7.1:35828207-35828226 MS.gene94767:CDS 40.0%
TCATCCTCACAGAGAAAGAA+AGG - chr7.1:35828167-35828186 None:intergenic 40.0%
TCTCACCAATCGGTAATATC+TGG - chr7.1:35828952-35828971 None:intergenic 40.0%
TGTCCACCATAAATGTTAGG+GGG - chr7.1:35827857-35827876 None:intergenic 40.0%
! AAGTTTTCTTACCATTCCGC+TGG + chr7.1:35828766-35828785 MS.gene94767:CDS 40.0%
! AGGGAGTGTGAGATTTGATT+TGG + chr7.1:35829209-35829228 MS.gene94767:intron 40.0%
! AGTTTTCTTACCATTCCGCT+GGG + chr7.1:35828767-35828786 MS.gene94767:CDS 40.0%
! ATTTCTGGAGGATTTCTCAG+AGG + chr7.1:35829046-35829065 MS.gene94767:CDS 40.0%
! ATTTTGGATAGGAGAGGTAG+AGG + chr7.1:35828637-35828656 MS.gene94767:CDS 40.0%
! TTTCTGGAGGATTTCTCAGA+GGG + chr7.1:35829047-35829066 MS.gene94767:CDS 40.0%
!! TATTGACTCCAAGCTTCTGA+AGG - chr7.1:35828382-35828401 None:intergenic 40.0%
AATATGGAAGCCGTGAGGTT+TGG + chr7.1:35827990-35828009 MS.gene94767:CDS 45.0%
AATTGGCGTGAAGGAGGTAA+AGG + chr7.1:35829189-35829208 MS.gene94767:intron 45.0%
AGACTAAGTGAGCCACAAGT+TGG + chr7.1:35828905-35828924 MS.gene94767:CDS 45.0%
AGTCAAATATGGAAGCCGTG+AGG + chr7.1:35827985-35828004 MS.gene94767:CDS 45.0%
AGTCATCAGAATTGGCGTGA+AGG + chr7.1:35829180-35829199 MS.gene94767:CDS 45.0%
AGTCCCCCTAACATTTATGG+TGG + chr7.1:35827851-35827870 MS.gene94767:CDS 45.0%
AGTCTAGCAATAGTCCCTAG+AGG - chr7.1:35827954-35827973 None:intergenic 45.0%
ATTGGCGTGAAGGAGGTAAA+GGG + chr7.1:35829190-35829209 MS.gene94767:intron 45.0%
CCAAGTCCCCCTAACATTTA+TGG + chr7.1:35827848-35827867 MS.gene94767:CDS 45.0%
CCATAAATGTTAGGGGGACT+TGG - chr7.1:35827851-35827870 None:intergenic 45.0%
CCTCCAGAAATAGGGGATTT+GGG - chr7.1:35829037-35829056 None:intergenic 45.0%
CTTGCCTTTCTTTCTCTGTG+AGG + chr7.1:35828160-35828179 MS.gene94767:CDS 45.0%
GATCCCAAATCCCCTATTTC+TGG + chr7.1:35829031-35829050 MS.gene94767:CDS 45.0%
GCCAATGCGTCAGATAATCT+AGG + chr7.1:35827822-35827841 MS.gene94767:CDS 45.0%
GTGCGATGAATCTGATGAGA+TGG + chr7.1:35828664-35828683 MS.gene94767:CDS 45.0%
TCAAGATGCATGCCAACTTG+TGG - chr7.1:35828920-35828939 None:intergenic 45.0%
TCCTCCAGAAATAGGGGATT+TGG - chr7.1:35829038-35829057 None:intergenic 45.0%
TGAGTCCTGACAGGTGTTTA+AGG + chr7.1:35828864-35828883 MS.gene94767:intron 45.0%
TGTGACCTTAAACACCTGTC+AGG - chr7.1:35828872-35828891 None:intergenic 45.0%
TTGGCATGCATCTTGAACTC+AGG + chr7.1:35828924-35828943 MS.gene94767:CDS 45.0%
! CAAAGGAGACTTTGAGAGCA+AGG - chr7.1:35828555-35828574 None:intergenic 45.0%
! CGGTCTTAGCCTTTCCATAA+TGG + chr7.1:35829363-35829382 MS.gene94767:CDS 45.0%
ATGATTACCACTCCACCCAG+CGG - chr7.1:35828785-35828804 None:intergenic 50.0%
CATCAGAATTGGCGTGAAGG+AGG + chr7.1:35829183-35829202 MS.gene94767:CDS 50.0%
TCAGTCACCATGAACGACGT+TGG - chr7.1:35829073-35829092 None:intergenic 50.0%
TTTCTTACCATTCCGCTGGG+TGG + chr7.1:35828770-35828789 MS.gene94767:CDS 50.0%
! TGACTGAGTTGAGTCCTGAC+AGG + chr7.1:35828855-35828874 MS.gene94767:intron 50.0%
! TGGCTATTTCATGCCCTGCA+AGG + chr7.1:35828982-35829001 MS.gene94767:CDS 50.0%
!! CCCAAATCCCCTATTTCTGG+AGG + chr7.1:35829034-35829053 MS.gene94767:CDS 50.0%
GCTGATGCTGCCAAACCTCA+CGG - chr7.1:35828003-35828022 None:intergenic 55.0%
CAGAGGGCCAACGTCGTTCA+TGG + chr7.1:35829063-35829082 MS.gene94767:CDS 60.0%
TACCACTCCACCCAGCGGAA+TGG - chr7.1:35828780-35828799 None:intergenic 60.0%
TACCATTCCGCTGGGTGGAG+TGG + chr7.1:35828775-35828794 MS.gene94767:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35827816 35829414 35827816 ID=MS.gene94767
chr7.1 mRNA 35827816 35829414 35827816 ID=MS.gene94767.t1;Parent=MS.gene94767
chr7.1 exon 35827816 35828448 35827816 ID=MS.gene94767.t1.exon1;Parent=MS.gene94767.t1
chr7.1 CDS 35827816 35828448 35827816 ID=cds.MS.gene94767.t1;Parent=MS.gene94767.t1
chr7.1 exon 35828530 35828812 35828530 ID=MS.gene94767.t1.exon2;Parent=MS.gene94767.t1
chr7.1 CDS 35828530 35828812 35828530 ID=cds.MS.gene94767.t1;Parent=MS.gene94767.t1
chr7.1 exon 35828903 35829204 35828903 ID=MS.gene94767.t1.exon3;Parent=MS.gene94767.t1
chr7.1 CDS 35828903 35829204 35828903 ID=cds.MS.gene94767.t1;Parent=MS.gene94767.t1
chr7.1 exon 35829313 35829414 35829313 ID=MS.gene94767.t1.exon4;Parent=MS.gene94767.t1
chr7.1 CDS 35829313 35829414 35829313 ID=cds.MS.gene94767.t1;Parent=MS.gene94767.t1
Gene Sequence

>MS.gene94767

ATGGCTGCCAATGCGTCAGATAATCTAGGTGTCCAAGTCCCCCTAACATTTATGGTGGACAAAGAAAGGAAGAAAGTTCTATATGCTGAGGCAGGAAAAGATTTTGTTGATGTTCTTTTCAGCTTCTTGACATTACCTCTAGGGACTATTGCTAGACTCGTATCTAAAGAGTCAAATATGGAAGCCGTGAGGTTTGGCAGCATCAGCTCACTGTATCAAAGTGTGTCTGATCTTGATGAGAAGTATCTATGGTCAAATACCTGCAAAGAAATGCTACTCAATCCTAGAAACTCTATGGAAGCTTATTGTCAAAATATGAAATTGAACATTGACGAAACTGAATGCTTGCCTTTCTTTCTCTGTGAGGATGATAATTGCATAAGAGAAAATGGGTACTATGCAAGTACATTCAGGGATCAAAAATGCATTTGTGGCAAGCTATTGAATATTGTGCGTACACGAAAATCCACTACAAAAAATGGCTTTGTTAATGAAAGTTCTACCTTTATAATTTCTGACAATCTTTTTGTCAGTCCTAATCATCTTGGAACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATAATATCGATGATATTGATAAACAAATCGTTAACATCAGCAAGAAAGAGGTATATTTTTTGAGTTTCTATTTTATCTTTTTCTGTTAATTGTTGTGTCTCTCATTAGTTTCTAATCTCTTGTTTCAACAGATCATTGATCTTCTCAAGTTTTCCTTGCTCTCAAAGTCTCCTTTGTCAGACTTTATCTTTAAAATGGAACATTTTGTTGGTAATTTAGACCCAAGAAATCGTTTGGAATTTTGGATAGGAGAGGTAGAGGAGCCGTGCGATGAATCTGATGAGATGGTTGTGAAAGTAGTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGGAGATGAAAATTTCACTGACTTTATTTTAAGTTTTCTTACCATTCCGCTGGGTGGAGTGGTAATCATGTTTGAAGGTCTCTCTTTTTTATGTTGCATGGATAATTTATATAACAGTATGACTGAGTTGAGTCCTGACAGGTGTTTAAGGTCACAATATGTTAAAGACAGACTAAGTGAGCCACAAGTTGGCATGCATCTTGAACTCAGGAACCAGATATTACCGATTGGTGAGACAAACTCATCTGGCTATTTCATGCCCTGCAAGGATCATAAAAAAGAAGTGAAATTTGTTGATCCCAAATCCCCTATTTCTGGAGGATTTCTCAGAGGGCCAACGTCGTTCATGGTGACTGACGACTTAGTTGTGAGTCCAATGTCATCAATTTCTGGTCTTGCGTATTTAGAAAGAATGAAGGTTCCCCTTAATGATGTAGAAGAAAGAGTCATCAGAATTGGCGTGAAGGAGGTAAAGGGAGTGTGAGATTTGATTTGGCACGCAGTCTTTCATTTTAATATTTCTTGTACCATCATATTCGTAACATCTAACAATATTTGATTGCATATATGGTTGCAGGGTCTCAGCATTCTGAAAGCTTCATTGACCTCAACATCTTCATTGACAAACGGTCTTAGCCTTTCCATAATGGAACAATTCTTATATCAAAATTATCTGTAG
Protein sequence

>MS.gene94767.t1

MAANASDNLGVQVPLTFMVDKERKKVLYAEAGKDFVDVLFSFLTLPLGTIARLVSKESNMEAVRFGSISSLYQSVSDLDEKYLWSNTCKEMLLNPRNSMEAYCQNMKLNIDETECLPFFLCEDDNCIRENGYYASTFRDQKCICGKLLNIVRTRKSTTKNGFVNESSTFIISDNLFVSPNHLGTSLNLLQKLGVNNIDDIDKQIVNISKKEIIDLLKFSLLSKSPLSDFIFKMEHFVGNLDPRNRLEFWIGEVEEPCDESDEMVVKVVRRKSNEQILFVEGDENFTDFILSFLTIPLGGVVIMFEDRLSEPQVGMHLELRNQILPIGETNSSGYFMPCKDHKKEVKFVDPKSPISGGFLRGPTSFMVTDDLVVSPMSSISGLAYLERMKVPLNDVEERVIRIGVKEGLSILKASLTSTSSLTNGLSLSIMEQFLYQNYL