AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055084

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055084.t1 MTR_7g066340 94.118 476 28 0 1 476 1 476 0.0 908
MS.gene055084.t1 MTR_7g066310 71.795 468 67 4 9 476 4 406 0.0 647
MS.gene055084.t1 MTR_7g066350 66.667 456 136 8 1 450 1 446 0.0 578
MS.gene055084.t1 MTR_7g066280 67.890 436 67 3 91 476 1 413 0.0 567
MS.gene055084.t1 MTR_1g041315 62.946 448 144 7 7 437 9 451 0.0 530
MS.gene055084.t1 MTR_7g066260 58.402 488 182 7 6 476 9 492 0.0 523
MS.gene055084.t1 MTR_7g066400 57.816 467 147 8 1 450 1 434 6.18e-173 494
MS.gene055084.t1 MTR_7g066570 56.487 501 171 9 3 468 5 493 1.65e-171 494
MS.gene055084.t1 MTR_7g066360 55.441 487 184 11 6 475 8 478 2.49e-155 450
MS.gene055084.t1 MTR_7g012680 55.297 472 171 8 3 459 5 451 1.12e-152 442
MS.gene055084.t1 MTR_7g066290 55.195 462 158 8 6 454 9 434 4.15e-150 435
MS.gene055084.t1 MTR_7g058710 50.301 499 180 12 1 453 1 477 7.54e-145 424
MS.gene055084.t1 MTR_7g066580 47.780 473 170 9 22 453 5 441 2.99e-128 380
MS.gene055084.t1 MTR_7g066580 27.308 260 131 10 6 234 209 441 1.54e-11 66.6
MS.gene055084.t1 MTR_7g066430 43.205 493 224 11 12 456 4 488 1.84e-118 357
MS.gene055084.t1 MTR_7g066430 28.631 241 140 6 9 232 254 479 5.60e-15 77.4
MS.gene055084.t1 MTR_7g058700 47.333 450 162 8 24 455 531 923 2.79e-117 366
MS.gene055084.t1 MTR_2g029400 45.188 478 150 10 1 441 1 403 1.47e-114 343
MS.gene055084.t1 MTR_7g066410 41.061 509 225 13 13 453 11 512 8.41e-111 337
MS.gene055084.t1 MTR_7g066410 30.833 240 130 8 12 232 284 506 5.91e-19 90.1
MS.gene055084.t1 MTR_7g066480 40.798 451 215 8 11 453 15 421 1.13e-97 301
MS.gene055084.t1 MTR_7g062300 38.697 491 237 15 1 449 1 469 7.67e-94 292
MS.gene055084.t1 MTR_7g063900 41.107 506 233 17 1 462 1 485 3.59e-93 291
MS.gene055084.t1 MTR_7g066490 41.518 448 202 13 12 454 16 408 7.17e-92 285
MS.gene055084.t1 MTR_7g062280 37.822 505 242 15 1 453 1 485 2.02e-91 287
MS.gene055084.t1 MTR_7g063880 40.083 484 232 16 5 454 4 463 2.21e-89 281
MS.gene055084.t1 MTR_7g063660 36.897 477 254 11 11 453 8 471 2.93e-89 281
MS.gene055084.t1 MTR_7g063830 39.262 461 243 12 5 453 3 438 1.31e-88 278
MS.gene055084.t1 MTR_7g063820 37.449 486 257 9 5 453 3 478 4.03e-87 275
MS.gene055084.t1 MTR_7g063890 38.723 501 245 14 5 462 20 501 2.03e-82 264
MS.gene055084.t1 MTR_7g063890 25.541 231 134 6 254 447 13 242 2.75e-14 75.5
MS.gene055084.t1 MTR_7g063920 34.583 480 230 8 5 453 4 430 8.67e-82 260
MS.gene055084.t1 MTR_7g063840 36.157 484 261 13 1 453 1 467 1.24e-81 261
MS.gene055084.t1 MTR_3g007740 39.168 457 242 12 11 453 8 442 3.04e-79 254
MS.gene055084.t1 MTR_4g019310 34.739 498 258 13 6 449 2 486 1.23e-78 254
MS.gene055084.t1 MTR_4g019310 29.046 241 143 9 8 235 262 487 2.00e-15 79.0
MS.gene055084.t1 MTR_4g017830 33.840 526 272 15 1 464 1 512 3.83e-78 253
MS.gene055084.t1 MTR_3g065200 36.966 468 198 15 10 440 1 408 1.27e-76 247
MS.gene055084.t1 MTR_4g017440 33.398 518 270 14 3 459 5 508 3.77e-76 248
MS.gene055084.t1 MTR_4g019340 35.146 478 248 12 13 442 39 502 1.45e-75 246
MS.gene055084.t1 MTR_4g019340 29.032 217 136 6 12 227 303 502 1.64e-15 79.3
MS.gene055084.t1 MTR_1g014060 56.744 215 88 3 21 234 9 219 3.38e-71 231
MS.gene055084.t1 MTR_1g014060 48.000 175 77 2 293 453 210 384 1.22e-36 139
MS.gene055084.t1 MTR_7g066680 47.826 299 93 6 215 450 37 335 4.67e-71 229
MS.gene055084.t1 MTR_7g066680 26.941 219 141 7 6 217 80 286 6.61e-12 67.0
MS.gene055084.t1 MTR_4g017410 32.824 524 274 17 5 475 2 500 5.04e-71 234
MS.gene055084.t1 MTR_4g017610 33.401 494 264 16 2 450 3 476 8.79e-70 230
MS.gene055084.t1 MTR_7g063670 35.217 460 263 10 8 453 13 451 2.58e-67 223
MS.gene055084.t1 MTR_4g017470 30.189 530 263 11 1 468 1 485 4.72e-62 210
MS.gene055084.t1 MTR_4g017550 30.913 482 232 19 41 451 20 471 9.85e-50 177
MS.gene055084.t1 MTR_4g017550 27.686 242 131 7 12 231 247 466 1.60e-15 79.3
MS.gene055084.t1 MTR_7g066390 53.165 158 46 1 304 461 1 130 6.37e-45 154
MS.gene055084.t1 MTR_7g062270 41.935 186 100 4 1 184 1 180 6.15e-36 137
MS.gene055084.t1 MTR_7g063720 36.493 211 119 4 257 453 17 226 4.84e-34 128
MS.gene055084.t1 MTR_7g063720 28.682 258 143 12 3 254 17 239 1.23e-16 79.7
MS.gene055084.t1 MTR_2g067310 41.899 179 63 3 18 196 53 190 1.86e-29 116
MS.gene055084.t1 MTR_8g023240 25.498 502 300 15 13 471 38 508 4.02e-28 117
MS.gene055084.t1 MTR_1g115440 34.000 250 135 9 5 238 4 239 5.70e-27 108
MS.gene055084.t1 MTR_7g100420 33.038 339 176 11 147 453 78 397 1.97e-26 111
MS.gene055084.t1 MTR_7g100420 49.351 77 33 2 13 83 40 116 2.77e-11 65.5
MS.gene055084.t1 MTR_7g063850 29.766 299 159 8 186 453 4 282 5.58e-26 107
MS.gene055084.t1 MTR_8g445860 30.894 246 149 7 4 239 5 239 3.61e-25 103
MS.gene055084.t1 MTR_8g445860 29.911 224 116 6 261 446 11 231 6.56e-20 89.4
MS.gene055084.t1 MTR_7g063690 30.108 279 125 8 13 290 13 222 3.62e-23 98.6
MS.gene055084.t1 MTR_0150s0010 30.488 246 149 7 5 238 3 238 8.55e-22 94.7
MS.gene055084.t1 MTR_0150s0010 29.515 227 116 5 261 446 8 231 2.19e-19 87.8
MS.gene055084.t1 MTR_1g115455 28.958 259 134 8 5 239 2 234 6.19e-17 80.5
MS.gene055084.t1 MTR_4g019330 33.696 184 82 7 277 453 32 182 2.27e-16 77.8
MS.gene055084.t1 MTR_4g019240 40.777 103 53 3 3 97 4 106 2.79e-15 74.3
MS.gene055084.t1 MTR_1g115450 39.326 89 49 1 7 95 2 85 6.73e-13 66.2
MS.gene055084.t1 MTR_7g063760 46.970 66 34 1 389 453 2 67 6.78e-13 64.3
MS.gene055084.t1 MTR_0150s0030 38.043 92 51 2 6 96 2 88 1.50e-12 67.0
MS.gene055084.t1 MTR_1g115470 40.678 118 55 5 1 115 1 106 1.62e-12 69.7
MS.gene055084.t1 MTR_8g044880 38.144 97 54 2 6 101 2 93 3.68e-12 67.4
MS.gene055084.t1 MTR_8g445910 39.130 92 50 2 6 96 2 88 1.23e-11 65.5
MS.gene055084.t1 MTR_7g063870 54.545 55 25 0 6 60 25 79 2.78e-11 64.3
MS.gene055084.t1 MTR_8g445920 39.535 86 47 1 5 90 3 83 9.01e-11 59.3
MS.gene055084.t1 MTR_8g044890 39.535 86 47 1 5 90 3 83 9.01e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055084.t1 AT5G01120 30.392 510 296 16 13 475 10 507 1.21e-61 209
MS.gene055084.t1 AT3G09140 31.225 506 282 15 1 453 1 493 6.93e-60 204
MS.gene055084.t1 AT5G01140 30.556 504 289 11 1 475 1 472 5.52e-59 201
MS.gene055084.t1 AT5G43240 30.409 513 296 16 13 475 10 511 6.12e-58 200
MS.gene055084.t1 AT5G43240 30.409 513 296 16 13 475 10 511 6.12e-58 200
MS.gene055084.t1 AT5G43240 30.409 513 296 16 13 475 10 511 6.12e-58 200
MS.gene055084.t1 AT3G09140 29.511 532 285 15 1 453 1 521 8.38e-56 194
MS.gene055084.t1 AT5G01150 31.263 483 281 12 12 454 9 480 1.19e-53 188
MS.gene055084.t1 AT5G01130 30.835 467 286 11 1 453 1 444 2.62e-52 183
MS.gene055084.t1 AT3G09110 33.333 321 203 5 12 328 9 322 1.36e-51 178
MS.gene055084.t1 AT3G09120 31.776 321 193 8 11 317 5 313 4.33e-40 147
MS.gene055084.t1 AT3G09120 26.718 262 145 10 260 479 3 259 5.88e-13 70.1
MS.gene055084.t1 AT5G37320 26.804 485 296 15 13 453 10 479 2.19e-36 140
MS.gene055084.t1 AT5G43240 29.429 350 202 12 164 475 25 367 1.33e-25 108

Find 86 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAACACCATTAACATTTA+TGG 0.167833 7.4:+38198671 MS.gene055084:CDS
CCATTTCCTCCACGTCATTA+AGG 0.184539 7.4:-38198767 None:intergenic
TTTCTACCTTTGGCTTCTTC+AGG 0.207589 7.4:-38199638 None:intergenic
GTCGGACTTTATATTTAAAA+AGG 0.210262 7.4:+38198212 MS.gene055084:CDS
AATATTGAAGCAGTGAAATT+TGG 0.215494 7.4:+38197601 MS.gene055084:CDS
CCAGCATATCCACCTGTAAT+AGG 0.242061 7.4:-38198651 None:intergenic
GGTACTGTTTGAGTTACTTT+AGG 0.248483 7.4:+38197824 MS.gene055084:CDS
TGATCTTCTCAAGTTGTCTT+TGG 0.249257 7.4:+38198173 MS.gene055084:CDS
AGCTTCTTATCATTGCCTTT+AGG 0.249361 7.4:+38197547 MS.gene055084:CDS
GCTTCTTATCATTGCCTTTA+GGG 0.256901 7.4:+38197548 MS.gene055084:CDS
CCTTTAGCACCACAACTCTA+AGG 0.276542 7.4:-38197468 None:intergenic
AGCAAAAGATACCTCTTTCT+TGG 0.276786 7.4:-38198061 None:intergenic
CCACCTGTAATAGGGGATTT+AGG 0.282026 7.4:-38198642 None:intergenic
GTACTGTTTGAGTTACTTTA+GGG 0.283577 7.4:+38197825 MS.gene055084:CDS
ATTGAGTAGCATTTCCTTGC+AGG 0.290117 7.4:-38197686 None:intergenic
AAGAAGCCAAAGGTAGAAAA+AGG 0.313800 7.4:+38199642 MS.gene055084:CDS
AACCAATTGGAAGTTAATAT+TGG 0.317943 7.4:+38198264 MS.gene055084:CDS
AAACTTGTCGTAACAACATT+TGG 0.329105 7.4:-38197967 None:intergenic
CGATTTCTTTACTCAAAATC+CGG 0.343240 7.4:-38197891 None:intergenic
TCTGTCACCATAAATGTTAA+TGG 0.349053 7.4:-38198678 None:intergenic
TTCTACCTTTGGCTTCTTCA+GGG 0.358571 7.4:-38199637 None:intergenic
ACTCAGCGGGTGCTTATTGC+TGG 0.359181 7.4:+38197716 MS.gene055084:CDS
GAGGAAATGGTCGTTAATAT+TGG 0.365896 7.4:+38198780 MS.gene055084:CDS
GATCCTAAATCCCCTATTAC+AGG 0.369144 7.4:+38198639 MS.gene055084:CDS
CAGCATATCCACCTGTAATA+GGG 0.383028 7.4:-38198650 None:intergenic
TGCAGGTATTAGACATGTTC+AGG 0.387295 7.4:+38199590 MS.gene055084:intron
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.4:+38198949 MS.gene055084:CDS
CATGTTTATATGTGGACAAT+AGG 0.397277 7.4:+38197803 MS.gene055084:CDS
CATTTCCTCCACGTCATTAA+GGG 0.403582 7.4:-38198766 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.4:+38197988 MS.gene055084:CDS
AAAGTTCTGTTTGCTGAGGC+AGG 0.405727 7.4:+38197499 MS.gene055084:CDS
GAGTTCAGATTGAGCAGAAA+TGG 0.407484 7.4:-38198550 None:intergenic
TTTAGTTCTAAGTAACCAAT+TGG 0.411255 7.4:+38198251 MS.gene055084:CDS
CCTTAGAGTTGTGGTGCTAA+AGG 0.411974 7.4:+38197468 MS.gene055084:CDS
CCTTAATGACGTGGAGGAAA+TGG 0.412198 7.4:+38198767 MS.gene055084:CDS
AGAGGAAGAATCTGATGAAA+TGG 0.420787 7.4:+38198293 MS.gene055084:CDS
CTTGGTGATGTTGATATTGA+CGG 0.422369 7.4:-38198043 None:intergenic
TACCAATATTAACTTCCAAT+TGG 0.431128 7.4:-38198266 None:intergenic
ATCTTGATACACAATATCTA+TGG 0.433771 7.4:+38197656 MS.gene055084:CDS
AAGATATGAAATACCATCAA+TGG 0.434003 7.4:-38198727 None:intergenic
GCAGAGGTAGTAGGACTTCA+AGG 0.456406 7.4:-38197770 None:intergenic
TAATATACTAACCAATGAAC+TGG 0.462240 7.4:-38198960 None:intergenic
TAAGCACCCGCTGAGTTGTT+CGG 0.463411 7.4:-38197709 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.469659 7.4:-38198412 None:intergenic
TCAAAATCTGCCTTGACAAA+CGG 0.470384 7.4:+38198931 MS.gene055084:CDS
CCTATTACAGGTGGATATGC+TGG 0.481859 7.4:+38198651 MS.gene055084:CDS
TTCATATCTTGAAAGAATGA+AGG 0.484244 7.4:+38198740 MS.gene055084:CDS
AGCTTACAAAAGAGAATCCT+TGG 0.499942 7.4:-38198437 None:intergenic
TGAGTTCAGACAAGTGTTTG+AGG 0.508556 7.4:+38198493 MS.gene055084:CDS
CTACCTTTGGCTTCTTCAGG+GGG 0.513478 7.4:-38199635 None:intergenic
GATTTCTTTACTCAAAATCC+GGG 0.515721 7.4:-38197890 None:intergenic
CAAAGTTTCCCTTAGAGTTG+TGG 0.516766 7.4:+38197459 MS.gene055084:CDS
TTGAGCAGAAATGGTTGGAC+TGG 0.524156 7.4:-38198541 None:intergenic
TATCAACATCACCAAGAAAG+AGG 0.532453 7.4:+38198050 MS.gene055084:CDS
TCTGTTTGCTGAGGCAGGGA+AGG 0.534123 7.4:+38197504 MS.gene055084:CDS
CTGGTTGAGGCCGTTTGTCA+AGG 0.537345 7.4:-38198941 None:intergenic
CCTTGCAAAACTTGTGGCTA+AGG 0.537453 7.4:+38197573 MS.gene055084:CDS
TCAGATTGAGCAGAAATGGT+TGG 0.541398 7.4:-38198546 None:intergenic
ACTCCAATGTCATCCATTGA+TGG 0.546893 7.4:+38198714 MS.gene055084:CDS
TCTACCTTTGGCTTCTTCAG+GGG 0.550005 7.4:-38199636 None:intergenic
GAACGTGTCATGTTTATATG+TGG 0.557536 7.4:+38197795 MS.gene055084:CDS
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.4:-38197996 None:intergenic
AGTTAATATTGGTAAAGAAG+AGG 0.563830 7.4:+38198275 MS.gene055084:CDS
CTTTAGCACCACAACTCTAA+GGG 0.565677 7.4:-38197467 None:intergenic
AAGTTCTGTTTGCTGAGGCA+GGG 0.567485 7.4:+38197500 MS.gene055084:CDS
AGGGACCCTTGCAAAACTTG+TGG 0.575071 7.4:+38197567 MS.gene055084:CDS
AGCATATCCACCTGTAATAG+GGG 0.575488 7.4:-38198649 None:intergenic
ATTTCCTCCACGTCATTAAG+GGG 0.575782 7.4:-38198765 None:intergenic
CTCAATCCGAACAACTCAGC+GGG 0.579196 7.4:+38197703 MS.gene055084:CDS
ACTAACCAATGAACTGGTTG+AGG 0.582536 7.4:-38198954 None:intergenic
ATATGCAACACTGCTCCTAA+GGG 0.592224 7.4:-38198411 None:intergenic
TTAAATATAAAGTCCGACAA+AGG 0.595166 7.4:-38198207 None:intergenic
CCTAAATCCCCTATTACAGG+TGG 0.600307 7.4:+38198642 MS.gene055084:CDS
CACGTTCTCGCAGAGGTAGT+AGG 0.601493 7.4:-38197779 None:intergenic
CGTTAATATTGGCCAGAAGG+AGG 0.604404 7.4:+38198791 MS.gene055084:CDS
TTTCTGCTCAATCTGAACTC+AGG 0.604931 7.4:+38198553 MS.gene055084:CDS
ATACCATCAATGGATGACAT+TGG 0.606080 7.4:-38198717 None:intergenic
GGTCGTTAATATTGGCCAGA+AGG 0.607810 7.4:+38198788 MS.gene055084:CDS
AAACAAAGTTCTGTTTGCTG+AGG 0.615217 7.4:+38197495 MS.gene055084:CDS
GCAGTGTTGCATATTCTCCA+AGG 0.619271 7.4:+38198420 MS.gene055084:CDS
GTAGTAGGACTTCAAGGACT+CGG 0.621417 7.4:-38197764 None:intergenic
TTTGTCGACTTGCTCAGCTG+AGG 0.622308 7.4:-38197440 None:intergenic
TCTATGGTCACACACCTGCA+AGG 0.646114 7.4:+38197672 MS.gene055084:CDS
AACATGACACGTTCTCGCAG+AGG 0.662980 7.4:-38197786 None:intergenic
TTTCCTCCACGTCATTAAGG+GGG 0.685681 7.4:-38198764 None:intergenic
ACTCAATCCGAACAACTCAG+CGG 0.727420 7.4:+38197702 MS.gene055084:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATTATAATTAAAATGT+AGG - chr7.4:38199004-38199023 None:intergenic 10.0%
!!! CTTTTTTAATTTAACAATTA+AGG + chr7.4:38199289-38199308 MS.gene055084:intron 10.0%
!!! AGTAATTTAAAATGAACAAA+AGG + chr7.4:38199499-38199518 MS.gene055084:intron 15.0%
!!! TTATAATTGTTTTTAGGTAT+CGG - chr7.4:38198591-38198610 None:intergenic 15.0%
!! ATAAGTGTTAAATATGTTGT+TGG - chr7.4:38199172-38199191 None:intergenic 20.0%
!! ATTTGAAGAGTGATTAAAAA+TGG + chr7.4:38199125-38199144 MS.gene055084:intron 20.0%
!! GATACCTAAAAACAATTATA+AGG + chr7.4:38198590-38198609 MS.gene055084:CDS 20.0%
!! TTTGAGTAGATTAAAATAGT+CGG - chr7.4:38199323-38199342 None:intergenic 20.0%
!!! AAAATTTGGTCTCTAAATTT+TGG - chr7.4:38199099-38199118 None:intergenic 20.0%
!!! AATAGTACTAATTTTCCATA+AGG + chr7.4:38199401-38199420 MS.gene055084:intron 20.0%
!!! ATATTATCTTTAGAATTGAC+TGG + chr7.4:38199196-38199215 MS.gene055084:intron 20.0%
!!! ATTTGTTATATTAAATGCAG+AGG - chr7.4:38199384-38199403 None:intergenic 20.0%
!!! TTTGCCTTATAATTGTTTTT+AGG - chr7.4:38198597-38198616 None:intergenic 20.0%
! AAATACATACAGTTACCTTA+TGG - chr7.4:38199419-38199438 None:intergenic 25.0%
! AACCAATTGGAAGTTAATAT+TGG + chr7.4:38198264-38198283 MS.gene055084:CDS 25.0%
! AAGATATGAAATACCATCAA+TGG - chr7.4:38198730-38198749 None:intergenic 25.0%
! AATATTGAAGCAGTGAAATT+TGG + chr7.4:38197601-38197620 MS.gene055084:CDS 25.0%
! AGTTAATATTGGTAAAGAAG+AGG + chr7.4:38198275-38198294 MS.gene055084:CDS 25.0%
! AGTTGTTATGAATCTAATAC+AGG - chr7.4:38198853-38198872 None:intergenic 25.0%
! ATCTTGATACACAATATCTA+TGG + chr7.4:38197656-38197675 MS.gene055084:CDS 25.0%
! ATGTAGGATGATATTATGTT+TGG - chr7.4:38198988-38199007 None:intergenic 25.0%
! CAAATATGAAAATAGTATGC+AGG - chr7.4:38199228-38199247 None:intergenic 25.0%
! CTTCAAATTCCTTCAAAATT+TGG - chr7.4:38199113-38199132 None:intergenic 25.0%
! GTCGGACTTTATATTTAAAA+AGG + chr7.4:38198212-38198231 MS.gene055084:CDS 25.0%
! TAATATACTAACCAATGAAC+TGG - chr7.4:38198963-38198982 None:intergenic 25.0%
! TACCAATATTAACTTCCAAT+TGG - chr7.4:38198269-38198288 None:intergenic 25.0%
! TTAAATATAAAGTCCGACAA+AGG - chr7.4:38198210-38198229 None:intergenic 25.0%
! TTCATATCTTGAAAGAATGA+AGG + chr7.4:38198740-38198759 MS.gene055084:CDS 25.0%
!! ATTTAGAGACCAAATTTTGA+AGG + chr7.4:38199101-38199120 MS.gene055084:intron 25.0%
!! TAAGGTAACTGTATGTATTT+TGG + chr7.4:38199419-38199438 MS.gene055084:intron 25.0%
!!! AAAAAGTGTTAGTGATGTAA+TGG - chr7.4:38199275-38199294 None:intergenic 25.0%
!!! TAAAGAAATCGGTTTTGTTA+AGG + chr7.4:38197903-38197922 MS.gene055084:CDS 25.0%
!!! TTTAGTTCTAAGTAACCAAT+TGG + chr7.4:38198251-38198270 MS.gene055084:CDS 25.0%
AAAATGAACAAAAGGTGAGA+AGG + chr7.4:38199507-38199526 MS.gene055084:intron 30.0%
AAACTTGTCGTAACAACATT+TGG - chr7.4:38197970-38197989 None:intergenic 30.0%
AAATGAACAAAAGGTGAGAA+GGG + chr7.4:38199508-38199527 MS.gene055084:intron 30.0%
AGGGATCAAAAATGTATTTG+TGG + chr7.4:38197844-38197863 MS.gene055084:CDS 30.0%
CAACCACATGAAATCAAATA+TGG - chr7.4:38198878-38198897 None:intergenic 30.0%
CATGTTTATATGTGGACAAT+AGG + chr7.4:38197803-38197822 MS.gene055084:CDS 30.0%
CGATTTCTTTACTCAAAATC+CGG - chr7.4:38197894-38197913 None:intergenic 30.0%
CTCACTAATTCTTCAATATG+TGG + chr7.4:38198136-38198155 MS.gene055084:intron 30.0%
GAGTGATTAAAAATGGAAGT+TGG + chr7.4:38199132-38199151 MS.gene055084:intron 30.0%
GATTTCTTTACTCAAAATCC+GGG - chr7.4:38197893-38197912 None:intergenic 30.0%
TCTGTCACCATAAATGTTAA+TGG - chr7.4:38198681-38198700 None:intergenic 30.0%
TGGAACACCATTAACATTTA+TGG + chr7.4:38198671-38198690 MS.gene055084:CDS 30.0%
! GTACTGTTTGAGTTACTTTA+GGG + chr7.4:38197825-38197844 MS.gene055084:CDS 30.0%
! TCACCATATTTGATTTCATG+TGG + chr7.4:38198872-38198891 MS.gene055084:intron 30.0%
!! ATGGAAGTTGGTATATTTAG+AGG + chr7.4:38199144-38199163 MS.gene055084:intron 30.0%
!! CGGATTTTGAGTAAAGAAAT+CGG + chr7.4:38197892-38197911 MS.gene055084:CDS 30.0%
!! TGGAAGTTGGTATATTTAGA+GGG + chr7.4:38199145-38199164 MS.gene055084:intron 30.0%
!!! GATTTTTTTTCTTGAAGCTG+AGG + chr7.4:38198350-38198369 MS.gene055084:CDS 30.0%
!!! TTTTAGGTATCGGTAATATC+TGG - chr7.4:38198581-38198600 None:intergenic 30.0%
AAGAAAGTAGGAGTCATGAA+GGG + chr7.4:38199531-38199550 MS.gene055084:intron 35.0%
AAGAAGCCAAAGGTAGAAAA+AGG + chr7.4:38199642-38199661 MS.gene055084:CDS 35.0%
AGAGGAAGAATCTGATGAAA+TGG + chr7.4:38198293-38198312 MS.gene055084:CDS 35.0%
AGCAAAAGATACCTCTTTCT+TGG - chr7.4:38198064-38198083 None:intergenic 35.0%
AGCTTACAAAAGAGAATCCT+TGG - chr7.4:38198440-38198459 None:intergenic 35.0%
AGCTTCTTATCATTGCCTTT+AGG + chr7.4:38197547-38197566 MS.gene055084:CDS 35.0%
ATACCATCAATGGATGACAT+TGG - chr7.4:38198720-38198739 None:intergenic 35.0%
CTTCAATATGTGGTTTGAAC+AGG + chr7.4:38198146-38198165 MS.gene055084:intron 35.0%
GAACGTGTCATGTTTATATG+TGG + chr7.4:38197795-38197814 MS.gene055084:CDS 35.0%
GAGGAAATGGTCGTTAATAT+TGG + chr7.4:38198780-38198799 MS.gene055084:CDS 35.0%
GCTTCTTATCATTGCCTTTA+GGG + chr7.4:38197548-38197567 MS.gene055084:CDS 35.0%
TATCAACATCACCAAGAAAG+AGG + chr7.4:38198050-38198069 MS.gene055084:CDS 35.0%
TCAAAATCTGCCTTGACAAA+CGG + chr7.4:38198931-38198950 MS.gene055084:CDS 35.0%
TGGATCTTCATATGATCCAA+GGG + chr7.4:38199439-38199458 MS.gene055084:intron 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.4:38197988-38198007 MS.gene055084:CDS 35.0%
TTATATGTGCATGTACATGC+AGG + chr7.4:38199573-38199592 MS.gene055084:intron 35.0%
TTGGATCTTCATATGATCCA+AGG + chr7.4:38199438-38199457 MS.gene055084:intron 35.0%
! AAACAAAGTTCTGTTTGCTG+AGG + chr7.4:38197495-38197514 MS.gene055084:CDS 35.0%
! ATTTGATTTCATGTGGTTGC+AGG + chr7.4:38198879-38198898 MS.gene055084:intron 35.0%
! GGTACTGTTTGAGTTACTTT+AGG + chr7.4:38197824-38197843 MS.gene055084:CDS 35.0%
! TCAAAATCCGGGATTTTTCT+CGG - chr7.4:38197882-38197901 None:intergenic 35.0%
! TGATCTTCTCAAGTTGTCTT+TGG + chr7.4:38198173-38198192 MS.gene055084:CDS 35.0%
! TTTGATTTCATGTGGTTGCA+GGG + chr7.4:38198880-38198899 MS.gene055084:intron 35.0%
!! AGTTTTCTCACTTTTCCCTT+AGG + chr7.4:38198396-38198415 MS.gene055084:CDS 35.0%
!! CTTGGTGATGTTGATATTGA+CGG - chr7.4:38198046-38198065 None:intergenic 35.0%
AATATGCAACACTGCTCCTA+AGG - chr7.4:38198415-38198434 None:intergenic 40.0%
ACTAACCAATGAACTGGTTG+AGG - chr7.4:38198957-38198976 None:intergenic 40.0%
ACTCCAATGTCATCCATTGA+TGG + chr7.4:38198714-38198733 MS.gene055084:CDS 40.0%
AGCATATCCACCTGTAATAG+GGG - chr7.4:38198652-38198671 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG - chr7.4:38198414-38198433 None:intergenic 40.0%
ATTGAGTAGCATTTCCTTGC+AGG - chr7.4:38197689-38197708 None:intergenic 40.0%
ATTTCCTCCACGTCATTAAG+GGG - chr7.4:38198768-38198787 None:intergenic 40.0%
CAAAGTTTCCCTTAGAGTTG+TGG + chr7.4:38197459-38197478 MS.gene055084:CDS 40.0%
CAATATGTGGTTTGAACAGG+TGG + chr7.4:38198149-38198168 MS.gene055084:intron 40.0%
CAGCATATCCACCTGTAATA+GGG - chr7.4:38198653-38198672 None:intergenic 40.0%
CATATGATCCAAGGGTAATG+TGG + chr7.4:38199447-38199466 MS.gene055084:intron 40.0%
CATTTCCTCCACGTCATTAA+GGG - chr7.4:38198769-38198788 None:intergenic 40.0%
CTTTAGCACCACAACTCTAA+GGG - chr7.4:38197470-38197489 None:intergenic 40.0%
GAAGAAAGTAGGAGTCATGA+AGG + chr7.4:38199530-38199549 MS.gene055084:intron 40.0%
GAGTTCAGATTGAGCAGAAA+TGG - chr7.4:38198553-38198572 None:intergenic 40.0%
GATCCTAAATCCCCTATTAC+AGG + chr7.4:38198639-38198658 MS.gene055084:CDS 40.0%
GGTCTCAAAAACTCCTTTGT+CGG + chr7.4:38198194-38198213 MS.gene055084:CDS 40.0%
TCAGATTGAGCAGAAATGGT+TGG - chr7.4:38198549-38198568 None:intergenic 40.0%
TGAGTTCAGACAAGTGTTTG+AGG + chr7.4:38198493-38198512 MS.gene055084:CDS 40.0%
TGCAGGTATTAGACATGTTC+AGG + chr7.4:38199590-38199609 MS.gene055084:intron 40.0%
TGTTGAACCGAGAAAAATCC+CGG + chr7.4:38197872-38197891 MS.gene055084:CDS 40.0%
TTTCTGCTCAATCTGAACTC+AGG + chr7.4:38198553-38198572 MS.gene055084:CDS 40.0%
! CTTAGCCACAAGTTTTGCAA+GGG - chr7.4:38197575-38197594 None:intergenic 40.0%
! GAGCTTCCTTTTTCTACCTT+TGG - chr7.4:38199651-38199670 None:intergenic 40.0%
! GTTTGTCAAGGCAGATTTTG+AGG - chr7.4:38198932-38198951 None:intergenic 40.0%
! TTCTACCTTTGGCTTCTTCA+GGG - chr7.4:38199640-38199659 None:intergenic 40.0%
! TTTCTACCTTTGGCTTCTTC+AGG - chr7.4:38199641-38199660 None:intergenic 40.0%
ACTCAATCCGAACAACTCAG+CGG + chr7.4:38197702-38197721 MS.gene055084:CDS 45.0%
AGGGTAATGTGGAGTAAGGA+CGG + chr7.4:38199458-38199477 MS.gene055084:intron 45.0%
AGGTGAGAAGGGAAGAAAGT+AGG + chr7.4:38199519-38199538 MS.gene055084:intron 45.0%
ATTGGCCAGAAGGAGGTAAA+AGG + chr7.4:38198798-38198817 MS.gene055084:intron 45.0%
CCACCTGTAATAGGGGATTT+AGG - chr7.4:38198645-38198664 None:intergenic 45.0%
CCAGCATATCCACCTGTAAT+AGG - chr7.4:38198654-38198673 None:intergenic 45.0%
CCATTTCCTCCACGTCATTA+AGG - chr7.4:38198770-38198789 None:intergenic 45.0%
CCTAAATCCCCTATTACAGG+TGG + chr7.4:38198642-38198661 MS.gene055084:CDS 45.0%
CCTATTACAGGTGGATATGC+TGG + chr7.4:38198651-38198670 MS.gene055084:CDS 45.0%
CCTTAATGACGTGGAGGAAA+TGG + chr7.4:38198767-38198786 MS.gene055084:CDS 45.0%
CCTTGCAAAACTTGTGGCTA+AGG + chr7.4:38197573-38197592 MS.gene055084:CDS 45.0%
CCTTTAGCACCACAACTCTA+AGG - chr7.4:38197471-38197490 None:intergenic 45.0%
CGTTAATATTGGCCAGAAGG+AGG + chr7.4:38198791-38198810 MS.gene055084:CDS 45.0%
GCAGTGTTGCATATTCTCCA+AGG + chr7.4:38198420-38198439 MS.gene055084:CDS 45.0%
GGTCGTTAATATTGGCCAGA+AGG + chr7.4:38198788-38198807 MS.gene055084:CDS 45.0%
GTAGTAGGACTTCAAGGACT+CGG - chr7.4:38197767-38197786 None:intergenic 45.0%
TCCAAGGGTAATGTGGAGTA+AGG + chr7.4:38199454-38199473 MS.gene055084:intron 45.0%
TCCTTACTCCACATTACCCT+TGG - chr7.4:38199458-38199477 None:intergenic 45.0%
TTGAGCAGAAATGGTTGGAC+TGG - chr7.4:38198544-38198563 None:intergenic 45.0%
TTGGCCAGAAGGAGGTAAAA+GGG + chr7.4:38198799-38198818 MS.gene055084:intron 45.0%
TTTCCTCCACGTCATTAAGG+GGG - chr7.4:38198767-38198786 None:intergenic 45.0%
! AAAGTTCTGTTTGCTGAGGC+AGG + chr7.4:38197499-38197518 MS.gene055084:CDS 45.0%
! AAGTTCTGTTTGCTGAGGCA+GGG + chr7.4:38197500-38197519 MS.gene055084:CDS 45.0%
! AGTTTTGCAAGGGTCCCTAA+AGG - chr7.4:38197565-38197584 None:intergenic 45.0%
! CCTTAGAGTTGTGGTGCTAA+AGG + chr7.4:38197468-38197487 MS.gene055084:CDS 45.0%
! CCTTAGCCACAAGTTTTGCA+AGG - chr7.4:38197576-38197595 None:intergenic 45.0%
! TACTCCCTTTTACCTCCTTC+TGG - chr7.4:38198806-38198825 None:intergenic 45.0%
! TCTACCTTTGGCTTCTTCAG+GGG - chr7.4:38199639-38199658 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG - chr7.4:38197999-38198018 None:intergenic 45.0%
AACATGACACGTTCTCGCAG+AGG - chr7.4:38197789-38197808 None:intergenic 50.0%
AACGGCCTCAACCAGTTCAT+TGG + chr7.4:38198949-38198968 MS.gene055084:CDS 50.0%
AGGGACCCTTGCAAAACTTG+TGG + chr7.4:38197567-38197586 MS.gene055084:CDS 50.0%
CTCAATCCGAACAACTCAGC+GGG + chr7.4:38197703-38197722 MS.gene055084:CDS 50.0%
GCAGAGGTAGTAGGACTTCA+AGG - chr7.4:38197773-38197792 None:intergenic 50.0%
TAAGCACCCGCTGAGTTGTT+CGG - chr7.4:38197712-38197731 None:intergenic 50.0%
TCTATGGTCACACACCTGCA+AGG + chr7.4:38197672-38197691 MS.gene055084:CDS 50.0%
! CTACCTTTGGCTTCTTCAGG+GGG - chr7.4:38199638-38199657 None:intergenic 50.0%
!! TTTGTCGACTTGCTCAGCTG+AGG - chr7.4:38197443-38197462 None:intergenic 50.0%
ACTCAGCGGGTGCTTATTGC+TGG + chr7.4:38197716-38197735 MS.gene055084:CDS 55.0%
CACGTTCTCGCAGAGGTAGT+AGG - chr7.4:38197782-38197801 None:intergenic 55.0%
CTGGTTGAGGCCGTTTGTCA+AGG - chr7.4:38198944-38198963 None:intergenic 55.0%
GAAGGTCCCCCTTAATGACG+TGG + chr7.4:38198758-38198777 MS.gene055084:CDS 55.0%
! TCTGTTTGCTGAGGCAGGGA+AGG + chr7.4:38197504-38197523 MS.gene055084:CDS 55.0%
GGTCCCCCTTAATGACGTGG+AGG + chr7.4:38198761-38198780 MS.gene055084:CDS 60.0%
TCGCCCCCTGAAGAAGCCAA+AGG + chr7.4:38199632-38199651 MS.gene055084:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38197427 38199677 38197427 ID=MS.gene055084
chr7.4 mRNA 38197427 38199677 38197427 ID=MS.gene055084.t1;Parent=MS.gene055084
chr7.4 exon 38197427 38198071 38197427 ID=MS.gene055084.t1.exon1;Parent=MS.gene055084.t1
chr7.4 CDS 38197427 38198071 38197427 ID=cds.MS.gene055084.t1;Parent=MS.gene055084.t1
chr7.4 exon 38198168 38198812 38198168 ID=MS.gene055084.t1.exon2;Parent=MS.gene055084.t1
chr7.4 CDS 38198168 38198812 38198168 ID=cds.MS.gene055084.t1;Parent=MS.gene055084.t1
chr7.4 exon 38198901 38198970 38198901 ID=MS.gene055084.t1.exon3;Parent=MS.gene055084.t1
chr7.4 CDS 38198901 38198970 38198901 ID=cds.MS.gene055084.t1;Parent=MS.gene055084.t1
chr7.4 exon 38199595 38199677 38199595 ID=MS.gene055084.t1.exon4;Parent=MS.gene055084.t1
chr7.4 CDS 38199595 38199677 38199595 ID=cds.MS.gene055084.t1;Parent=MS.gene055084.t1
Gene Sequence

>MS.gene055084

ATGGCTGAAAATTCCTCAGCTGAGCAAGTCGACAAAGTTTCCCTTAGAGTTGTGGTGCTAAAGGAGAAAAACAAAGTTCTGTTTGCTGAGGCAGGGAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTATCATTGCCTTTAGGGACCCTTGCAAAACTTGTGGCTAAGGACTCAAATATTGAAGCAGTGAAATTTGGCAGCATAAGCTCGCTGTATCAAAGTGTGTCAGATCTTGATACACAATATCTATGGTCACACACCTGCAAGGAAATGCTACTCAATCCGAACAACTCAGCGGGTGCTTATTGCTGGAATATGAAATTGAACATTGACAATACCGAGTCCTTGAAGTCCTACTACCTCTGCGAGAACGTGTCATGTTTATATGTGGACAATAGGTACTGTTTGAGTTACTTTAGGGATCAAAAATGTATTTGTGGAAAGCTGTTGAACCGAGAAAAATCCCGGATTTTGAGTAAAGAAATCGGTTTTGTTAAGGAAATGTCAACGTTTATCATATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGATGCTATTGATAAACAAACCGTCAATATCAACATCACCAAGAAAGAGGTATCTTTTGCTGTTCTGTGTTTGTATGACATATTTTTTGTTGATTATTATTATTGTTTTTTCTCTCACTAATTCTTCAATATGTGGTTTGAACAGGTGGTTGATCTTCTCAAGTTGTCTTTGGTCTCAAAAACTCCTTTGTCGGACTTTATATTTAAAAAGGAACATTTTGTTGAAGATTTAGTTCTAAGTAACCAATTGGAAGTTAATATTGGTAAAGAAGAGGAAGAATCTGATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCAAGTAAACAGATTTTTTTTCTTGAAGCTGAGGAAGATTTTGCTGATTTTGTTTTTAGTTTTCTCACTTTTCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGATTCTCTTTTGTAAGCTGCATTGATAATTTATATAAGAGCGTGACTGAGTTGAGTTCAGACAAGTGTTTGAGGTCACAGCTTTTCAAAGACATACTAACCAGTCCAACCATTTCTGCTCAATCTGAACTCAGGAACCAGATATTACCGATACCTAAAAACAATTATAAGGCAAAAAATATGTCATACAAATTTGTTGATCCTAAATCCCCTATTACAGGTGGATATGCTGGAACACCATTAACATTTATGGTGACAGACGAATTAGTTGTGACTCCAATGTCATCCATTGATGGTATTTCATATCTTGAAAGAATGAAGGTCCCCCTTAATGACGTGGAGGAAATGGTCGTTAATATTGGCCAGAAGGAGGTAAAAGGGAGTATGTTCGTCTTTCAGTTTAATATTTCCTGTATTAGATTCATAACAACTCACCATATTTGATTTCATGTGGTTGCAGGGTCTCAGCATACTTAGAGCTTCATTGACCTCAAAATCTGCCTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATATTAGACCAAACATAATATCATCCTACATTTTAATTATAATAAACACAATATTAAAGTTCATCTATAAAATTCTTCAAAAATAGTCGCTTCGAACATGTTAAGTGAACTTTTGTTAACCAAAATTTAGAGACCAAATTTTGAAGGAATTTGAAGAGTGATTAAAAATGGAAGTTGGTATATTTAGAGGGACCAACAACATATTTAACACTTATTTGTATATTATCTTTAGAATTGACTGGTTTGTGCCTGCATACTATTTTCATATTTGAAATACTTGTGTAAACTAACATAGCCATTACATCACTAACACTTTTTTAATTTAACAATTAAGGAGAAATCACCGACTATTTTAATCTACTCAAATGTGCTACGCAACTCATGCTTATAAAAATATTAGATGACCTCTGCATTTAATATAACAAATAGTACTAATTTTCCATAAGGTAACTGTATGTATTTTGGATCTTCATATGATCCAAGGGTAATGTGGAGTAAGGACGGTTAATGTCAAGAAAATTAAGTAATTTAAAATGAACAAAAGGTGAGAAGGGAAGAAAGTAGGAGTCATGAAGGGTGTGCTAACTACTTTTTTATTATATGTGCATGTACATGCAGGTATTAGACATGTTCAGGCTAATTTGTCATCTAATGCTCGCCCCCTGAAGAAGCCAAAGGTAGAAAAAGGAAGCTCGAGATAA
Protein sequence

>MS.gene055084.t1

MAENSSAEQVDKVSLRVVVLKEKNKVLFAEAGKDFVDVLLSFLSLPLGTLAKLVAKDSNIEAVKFGSISSLYQSVSDLDTQYLWSHTCKEMLLNPNNSAGAYCWNMKLNIDNTESLKSYYLCENVSCLYVDNRYCLSYFRDQKCICGKLLNREKSRILSKEIGFVKEMSTFIISDDLYVMPNVVTTSLNLLQKLGVNDIDAIDKQTVNINITKKEVVDLLKLSLVSKTPLSDFIFKKEHFVEDLVLSNQLEVNIGKEEEESDEMVVKVLRRKSSKQIFFLEAEEDFADFVFSFLTFPLGAVLHILQGFSFVSCIDNLYKSVTELSSDKCLRSQLFKDILTSPTISAQSELRNQILPIPKNNYKAKNMSYKFVDPKSPITGGYAGTPLTFMVTDELVVTPMSSIDGISYLERMKVPLNDVEEMVVNIGQKEGLSILRASLTSKSALTNGLNQFIGIRHVQANLSSNARPLKKPKVEKGSSR