AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037535

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037535.t1 MTR_4g017410 73.750 400 85 5 1 383 98 494 0.0 571
MS.gene037535.t1 MTR_4g017410 29.752 242 127 10 165 366 2 240 8.34e-15 76.3
MS.gene037535.t1 MTR_4g017470 70.813 418 49 3 1 383 101 480 0.0 549
MS.gene037535.t1 MTR_4g017470 30.137 219 112 6 169 369 9 204 6.41e-15 76.6
MS.gene037535.t1 MTR_4g017550 68.238 403 84 5 1 369 77 469 0.0 518
MS.gene037535.t1 MTR_4g017440 65.271 406 112 3 1 379 105 508 2.97e-180 511
MS.gene037535.t1 MTR_4g017830 64.096 415 115 3 1 382 97 510 1.12e-178 508
MS.gene037535.t1 MTR_4g017830 27.897 233 133 7 169 369 9 238 1.44e-11 66.2
MS.gene037535.t1 MTR_4g019340 62.312 398 93 4 1 363 128 503 2.73e-164 470
MS.gene037535.t1 MTR_4g017610 57.908 392 128 6 1 370 100 476 1.97e-146 424
MS.gene037535.t1 MTR_4g017610 28.390 236 130 9 169 369 10 241 2.76e-11 65.1
MS.gene037535.t1 MTR_4g019310 40.000 410 208 12 1 379 95 497 1.79e-76 245
MS.gene037535.t1 MTR_7g066340 32.821 390 218 10 1 373 91 453 3.70e-53 183
MS.gene037535.t1 MTR_7g066340 29.146 199 118 6 172 347 12 210 1.09e-13 72.8
MS.gene037535.t1 MTR_7g066350 34.465 383 214 10 1 370 88 446 1.70e-50 176
MS.gene037535.t1 MTR_7g066400 34.646 381 215 10 1 369 75 433 9.51e-49 171
MS.gene037535.t1 MTR_7g058710 31.235 429 221 14 1 379 79 483 3.77e-48 170
MS.gene037535.t1 MTR_7g058710 24.138 232 133 6 164 366 4 221 2.26e-11 65.5
MS.gene037535.t1 MTR_7g066410 32.947 431 224 11 1 373 89 512 2.12e-46 166
MS.gene037535.t1 MTR_7g066260 33.077 390 215 13 1 369 94 458 9.87e-45 161
MS.gene037535.t1 MTR_7g066260 29.730 222 127 6 172 366 15 234 1.40e-13 72.4
MS.gene037535.t1 MTR_7g066570 31.971 416 228 12 1 381 93 488 3.62e-44 161
MS.gene037535.t1 MTR_7g066430 32.360 411 236 9 1 375 83 487 6.42e-44 159
MS.gene037535.t1 MTR_7g058700 32.581 399 194 10 1 379 584 927 1.29e-43 162
MS.gene037535.t1 MTR_7g012680 32.995 394 214 11 1 379 93 451 4.91e-43 155
MS.gene037535.t1 MTR_7g012680 27.684 177 107 5 164 319 6 182 2.38e-11 65.5
MS.gene037535.t1 MTR_7g062280 34.204 421 217 17 1 379 89 491 6.52e-43 156
MS.gene037535.t1 MTR_1g041315 31.959 388 204 13 1 357 93 451 8.69e-42 153
MS.gene037535.t1 MTR_7g063880 30.958 407 225 14 1 379 90 468 3.62e-38 143
MS.gene037535.t1 MTR_7g063880 31.073 177 101 6 163 319 1 176 7.44e-11 63.9
MS.gene037535.t1 MTR_7g063660 30.221 407 239 12 1 379 88 477 6.65e-37 139
MS.gene037535.t1 MTR_7g063660 27.119 236 153 4 167 383 4 239 3.92e-14 73.9
MS.gene037535.t1 MTR_7g066360 33.938 386 205 15 1 369 93 445 3.20e-36 138
MS.gene037535.t1 MTR_7g062300 30.446 404 227 12 1 372 91 472 4.41e-36 137
MS.gene037535.t1 MTR_7g066280 26.835 436 210 10 1 373 1 390 7.56e-35 133
MS.gene037535.t1 MTR_7g066290 30.867 392 200 13 1 373 94 433 4.48e-34 131
MS.gene037535.t1 MTR_7g063900 30.657 411 230 14 1 373 89 482 6.31e-34 132
MS.gene037535.t1 MTR_7g063900 30.055 183 101 6 163 322 1 179 2.76e-11 65.5
MS.gene037535.t1 MTR_7g063840 28.818 406 241 12 1 379 89 473 7.04e-32 125
MS.gene037535.t1 MTR_7g063830 31.078 399 214 15 1 380 89 445 9.38e-32 125
MS.gene037535.t1 MTR_7g066310 27.649 387 177 10 1 373 86 383 3.83e-31 122
MS.gene037535.t1 MTR_7g066480 29.793 386 199 13 1 373 95 421 1.75e-30 121
MS.gene037535.t1 MTR_7g066480 28.085 235 138 7 157 366 1 229 7.65e-11 63.9
MS.gene037535.t1 MTR_7g066580 27.098 417 213 12 1 374 74 442 6.17e-30 120
MS.gene037535.t1 MTR_7g063890 28.297 417 245 10 1 380 106 505 1.37e-29 119
MS.gene037535.t1 MTR_3g007740 29.058 382 245 10 2 373 77 442 3.12e-29 118
MS.gene037535.t1 MTR_7g063820 29.567 416 237 14 1 379 88 484 1.48e-28 116
MS.gene037535.t1 MTR_7g063920 29.847 392 217 13 1 379 90 436 1.67e-28 115
MS.gene037535.t1 MTR_7g063670 30.326 399 233 16 2 379 83 457 9.98e-28 114
MS.gene037535.t1 MTR_3g065200 27.735 393 211 9 1 368 72 416 7.92e-27 111
MS.gene037535.t1 MTR_7g066490 27.822 381 199 10 1 373 95 407 8.68e-25 105
MS.gene037535.t1 MTR_7g063720 31.193 218 143 3 162 373 10 226 5.64e-20 88.6
MS.gene037535.t1 MTR_4g019330 33.163 196 90 5 186 379 32 188 1.61e-19 85.9
MS.gene037535.t1 MTR_8g445860 29.204 226 130 8 168 366 9 231 4.07e-17 80.5
MS.gene037535.t1 MTR_7g066680 30.583 206 123 4 167 352 81 286 6.82e-16 78.6
MS.gene037535.t1 MTR_1g115450 45.238 84 42 3 168 248 3 85 1.27e-14 70.9
MS.gene037535.t1 MTR_0150s0010 26.160 237 136 6 163 366 1 231 2.81e-14 72.4
MS.gene037535.t1 MTR_1g115440 26.724 232 139 6 164 366 3 232 6.74e-14 71.2
MS.gene037535.t1 MTR_1g115455 39.535 86 50 1 165 248 2 87 1.92e-13 69.7
MS.gene037535.t1 MTR_7g100420 29.114 316 185 11 76 369 95 393 2.66e-13 71.2
MS.gene037535.t1 MTR_0150s0030 35.556 90 55 1 167 253 3 92 3.34e-13 68.6
MS.gene037535.t1 MTR_8g445910 31.624 117 70 2 167 273 3 119 7.17e-13 68.6
MS.gene037535.t1 MTR_8g445920 37.333 75 47 0 163 237 1 75 9.05e-13 64.7
MS.gene037535.t1 MTR_8g044890 37.333 75 47 0 163 237 1 75 9.05e-13 64.7
MS.gene037535.t1 MTR_8g044880 31.624 117 70 2 167 273 3 119 1.17e-12 68.2
MS.gene037535.t1 MTR_4g019350 44.578 83 26 1 230 292 1 83 3.14e-12 62.8
MS.gene037535.t1 MTR_8g023240 23.502 217 144 5 59 260 159 368 1.54e-11 66.2
MS.gene037535.t1 MTR_4g019240 61.538 52 20 0 331 382 112 163 1.83e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037535.t1 AT5G01140 30.542 406 238 13 1 380 72 459 3.37e-42 154
MS.gene037535.t1 AT5G01120 28.960 404 246 10 1 369 88 485 3.48e-39 146
MS.gene037535.t1 AT5G01120 29.911 224 126 10 173 366 10 232 5.32e-12 67.8
MS.gene037535.t1 AT5G43240 30.562 409 237 10 1 369 88 489 1.09e-37 142
MS.gene037535.t1 AT5G43240 30.562 409 237 10 1 369 88 489 1.09e-37 142
MS.gene037535.t1 AT5G43240 30.562 409 237 10 1 369 88 489 1.09e-37 142
MS.gene037535.t1 AT5G01130 30.000 390 236 11 1 379 88 451 1.25e-37 141
MS.gene037535.t1 AT5G01150 28.606 409 259 11 1 383 88 489 6.33e-34 132
MS.gene037535.t1 AT5G01150 28.378 222 134 7 165 361 2 223 6.51e-11 64.3
MS.gene037535.t1 AT3G09140 28.810 420 238 15 1 373 88 493 4.93e-33 129
MS.gene037535.t1 AT3G09140 29.339 242 131 7 165 366 2 243 4.61e-14 73.9
MS.gene037535.t1 AT5G43240 30.240 334 199 5 65 369 17 345 1.63e-29 117
MS.gene037535.t1 AT5G37320 29.032 403 244 15 1 373 89 479 1.22e-28 117
MS.gene037535.t1 AT3G09110 33.610 241 140 7 2 233 89 318 4.84e-28 113
MS.gene037535.t1 AT3G09140 26.786 448 239 16 1 373 88 521 8.91e-28 115
MS.gene037535.t1 AT3G09140 41.758 91 46 3 165 248 2 92 4.27e-12 67.8
MS.gene037535.t1 AT3G09120 31.224 237 145 7 1 226 84 313 1.77e-23 100
MS.gene037535.t1 AT3G09120 27.391 230 133 7 168 366 2 228 4.55e-13 69.7

Find 82 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCTCACGAATACAATTT+TGG 0.134304 4.3:-82190115 MS.gene037535:CDS
TCAAGTGCAATCAAGGATTT+TGG 0.210374 4.3:+82189579 None:intergenic
TAATAGACAGCCTAAGAATT+TGG 0.219049 4.3:-82190507 MS.gene037535:CDS
AGCTTCCTTGCGGTGCCATT+AGG 0.245629 4.3:-82189922 MS.gene037535:CDS
AGGTCGGCTGTCTTTGTTCT+TGG 0.253793 4.3:+82190083 None:intergenic
CATGCAGCTATTGATGGAAT+TGG 0.276915 4.3:-82190372 MS.gene037535:CDS
GCTTCCTTGCGGTGCCATTA+GGG 0.289452 4.3:-82189921 MS.gene037535:CDS
AGGGTCCATTGTAAAACTTT+TGG 0.292017 4.3:-82189902 MS.gene037535:CDS
CCATCAGAATCCAAATTCTT+AGG 0.304525 4.3:+82190497 None:intergenic
AGAAAATGGATCCTTGTTTA+TGG 0.306028 4.3:-82190438 MS.gene037535:CDS
GTAAAGAGAGCAGCATTATA+TGG 0.327171 4.3:-82189516 MS.gene037535:CDS
ATGCAGCTATTGATGGAATT+GGG 0.333611 4.3:-82190371 MS.gene037535:CDS
CAACGGATCAGAAGTTGATA+TGG 0.337364 4.3:-82189544 MS.gene037535:CDS
ACTGCTGATGCAAATTTGTT+AGG 0.340533 4.3:+82190063 None:intergenic
GGCGTCTTTGTGAGAGAAAA+TGG 0.347570 4.3:-82190452 MS.gene037535:CDS
ATAGTCTTTGCAGAAACTAA+TGG 0.349644 4.3:-82189967 MS.gene037535:CDS
GACTTCCATGCAGCTATTGA+TGG 0.360874 4.3:-82190378 MS.gene037535:CDS
TAGTCTTTGCAGAAACTAAT+GGG 0.368071 4.3:-82189966 MS.gene037535:CDS
AAGTGATTCACATGGATTCC+TGG 0.370075 4.3:+82190649 None:intergenic
ATAATTCTTTCAAATATAGA+AGG 0.379200 4.3:+82189448 None:intergenic
ACATCAGAATTTACCTTGAC+TGG 0.392128 4.3:-82189260 MS.gene037535:CDS
CACAGGTACAGTGAAGGTTT+CGG 0.392605 4.3:+82190540 None:intergenic
CTTCAGGAATGTTGAGGGGC+TGG 0.400601 4.3:+82189749 None:intergenic
GTGTAGGCTTTGAGCTTCCT+TGG 0.403804 4.3:-82189293 MS.gene037535:intron
GAGAGGCTCATGGGAGGTTA+AGG 0.419496 4.3:+82190131 None:intergenic
CTTCAAGATCATCAAGAGAA+AGG 0.433646 4.3:+82189424 None:intergenic
ATTCTTAGGCTGTCTATTAG+TGG 0.442822 4.3:+82190511 None:intergenic
GGGAGGTTAAGGTATAATTC+AGG 0.442965 4.3:+82190142 None:intergenic
TATGAAACAACAGAAGATAG+AGG 0.442972 4.3:-82189640 MS.gene037535:intron
TTCTTAGGCTGTCTATTAGT+GGG 0.450651 4.3:+82190512 None:intergenic
ATTTACCTTGACTGGTGGAC+TGG 0.456181 4.3:-82189252 MS.gene037535:CDS
ATCAACTTCTGATCCGTTGA+AGG 0.456279 4.3:+82189548 None:intergenic
CTTGTTTAGGCACTTTCAAA+AGG 0.456406 4.3:+82189225 None:intergenic
TGGAGAACTTGGACTCTTCA+TGG 0.456560 4.3:-82189834 MS.gene037535:CDS
CCTGGTGTAGCACACCAGTT+TGG 0.470247 4.3:-82189781 MS.gene037535:CDS
GTACAAGAGTGTGGAGAACT+TGG 0.471755 4.3:-82189845 MS.gene037535:CDS
TGCGCTGTGTTACTCAATCC+TGG 0.472920 4.3:-82189799 MS.gene037535:CDS
TTGGGAGCTAACTCTTTAGC+TGG 0.477984 4.3:-82189883 MS.gene037535:CDS
GTTGCACTTCAGGAATGTTG+AGG 0.478547 4.3:+82189743 None:intergenic
AACGGATCAGAAGTTGATAT+GGG 0.481100 4.3:-82189543 MS.gene037535:CDS
TTGCACTTCAGGAATGTTGA+GGG 0.483553 4.3:+82189744 None:intergenic
TCTTGTATCAAGTGCAATCA+AGG 0.488719 4.3:+82189572 None:intergenic
AGAGCAGCATTATATGGTAT+AGG 0.490389 4.3:-82189510 MS.gene037535:CDS
AGGAAAGAATTAGCAGAGAG+TGG 0.503286 4.3:+82189468 None:intergenic
GCTGGTTTAGACAACCAAAC+TGG 0.512842 4.3:+82189767 None:intergenic
TTCAGACTTGACTCAAATAG+AGG 0.521757 4.3:-82190345 MS.gene037535:CDS
ATGGAAGTCACAGAGGAACT+TGG 0.523683 4.3:+82190392 None:intergenic
AGTGATTCACATGGATTCCT+GGG 0.529029 4.3:+82190650 None:intergenic
ATTTGGATTCTGATGGTCAA+GGG 0.529572 4.3:-82190490 MS.gene037535:CDS
TTTACCTTGACTGGTGGACT+GGG 0.534908 4.3:-82189251 MS.gene037535:CDS
CCTAAGAATTTGGATTCTGA+TGG 0.538168 4.3:-82190497 MS.gene037535:CDS
TTGTATTCGTGAGAGGCTCA+TGG 0.539351 4.3:+82190121 None:intergenic
GAAGCAAAAGTGATAAGCAT+TGG 0.539544 4.3:-82189405 MS.gene037535:CDS
AGGAGTGATTTCTAAGTCAA+AGG 0.548470 4.3:-82189616 MS.gene037535:CDS
TGCATCAGCAGTTAGAGTAA+CGG 0.551162 4.3:-82190052 MS.gene037535:CDS
CCCAAAATTGTATTCGTGAG+AGG 0.553833 4.3:+82190114 None:intergenic
GACAAATGTTGCTTCATCCC+AGG 0.556708 4.3:-82190667 None:intergenic
CCAAACTGGTGTGCTACACC+AGG 0.558658 4.3:+82189781 None:intergenic
TCAGAATTTACCTTGACTGG+TGG 0.564615 4.3:-82189257 MS.gene037535:CDS
CTGATGCAAATTTGTTAGGT+CGG 0.565408 4.3:+82190067 None:intergenic
AACTCTTTAGCTGGATGTGT+CGG 0.570088 4.3:-82189874 MS.gene037535:CDS
GTCTCCCAGTCCACCAGTCA+AGG 0.580655 4.3:+82189247 None:intergenic
CGAAACCTTCACTGTACCTG+TGG 0.582669 4.3:-82190539 MS.gene037535:CDS
TGTATTCGTGAGAGGCTCAT+GGG 0.584288 4.3:+82190122 None:intergenic
AAACAACAGAAGATAGAGGA+AGG 0.595642 4.3:-82189636 MS.gene037535:intron
CAAGGGAATAATGCACAAGA+TGG 0.595731 4.3:-82190473 MS.gene037535:CDS
GAGGAAGTTGCACACAACAT+TGG 0.595734 4.3:-82190326 MS.gene037535:CDS
TGCAGCTATTGATGGAATTG+GGG 0.605020 4.3:-82190370 MS.gene037535:CDS
CGGTAATTTGTACAAGAGTG+TGG 0.611572 4.3:-82189854 MS.gene037535:CDS
GATAAGCATTGGTGAAGCTG+AGG 0.615886 4.3:-82189394 MS.gene037535:intron
CTGATGTCAAGAATGATCCA+AGG 0.622326 4.3:+82189276 None:intergenic
AATTTGGATTCTGATGGTCA+AGG 0.623814 4.3:-82190491 MS.gene037535:CDS
TGCACTTCAGGAATGTTGAG+GGG 0.627539 4.3:+82189745 None:intergenic
CAATTCCATCAATAGCTGCA+TGG 0.629073 4.3:+82190373 None:intergenic
ATCATCAGACACCATAAACA+AGG 0.642521 4.3:+82190427 None:intergenic
CTTGATACAAGATCCTTCAA+CGG 0.642862 4.3:-82189561 MS.gene037535:CDS
AGTCTTTGCAGAAACTAATG+GGG 0.655566 4.3:-82189965 MS.gene037535:CDS
ACACAACATTGGCAAACATG+AGG 0.672200 4.3:-82190315 MS.gene037535:intron
TGGACCCTAATGGCACCGCA+AGG 0.677379 4.3:+82189917 None:intergenic
ATTCGTGAGAGGCTCATGGG+AGG 0.706396 4.3:+82190125 None:intergenic
TAGCTGCATGGAAGTCACAG+AGG 0.730672 4.3:+82190385 None:intergenic
TTCATGCAAAGTGATTCACA+TGG 0.744175 4.3:+82190641 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCTTTCAAATATAGA+AGG + chr4.3:82190416-82190435 None:intergenic 15.0%
!! ATTACATATTATTATGGTAC+AGG - chr4.3:82190149-82190168 MS.gene037535:CDS 20.0%
!! CCAAAATGTTAAAACATAAA+TGG + chr4.3:82189684-82189703 None:intergenic 20.0%
!! GTACCATAATAATATGTAAT+GGG + chr4.3:82190149-82190168 None:intergenic 20.0%
!! TGTACCATAATAATATGTAA+TGG + chr4.3:82190150-82190169 None:intergenic 20.0%
!! TTACATATTATTATGGTACA+GGG - chr4.3:82190150-82190169 MS.gene037535:CDS 20.0%
!!! AAAAAAGATGATTCTTGTTT+AGG + chr4.3:82190652-82190671 None:intergenic 20.0%
!!! CCATTTATGTTTTAACATTT+TGG - chr4.3:82189681-82189700 MS.gene037535:intron 20.0%
!!! TACTTTAACATCAATTTTCT+TGG + chr4.3:82189850-82189869 None:intergenic 20.0%
! CACACAAAAAATTTACTTGA+TGG + chr4.3:82189274-82189293 None:intergenic 25.0%
! GAAAATAGATGTATTACAGA+AGG + chr4.3:82189593-82189612 None:intergenic 25.0%
! TCTTTGATTCTCTTTAATTG+CGG - chr4.3:82190546-82190565 MS.gene037535:CDS 25.0%
ATAGTCTTTGCAGAAACTAA+TGG - chr4.3:82189894-82189913 MS.gene037535:CDS 30.0%
CCACCCATTACATATTATTA+TGG - chr4.3:82190143-82190162 MS.gene037535:CDS 30.0%
GCAATTAAAGAGAATCAAAG+AGG + chr4.3:82190547-82190566 None:intergenic 30.0%
GTATTACAGAAGGAAATACA+TGG + chr4.3:82189583-82189602 None:intergenic 30.0%
TAATAGACAGCCTAAGAATT+TGG - chr4.3:82189354-82189373 MS.gene037535:intron 30.0%
TAGTCTTTGCAGAAACTAAT+GGG - chr4.3:82189895-82189914 MS.gene037535:CDS 30.0%
TATGAAACAACAGAAGATAG+AGG - chr4.3:82190221-82190240 MS.gene037535:intron 30.0%
! AGAAAATGGATCCTTGTTTA+TGG - chr4.3:82189423-82189442 MS.gene037535:CDS 30.0%
! CCATAATAATATGTAATGGG+TGG + chr4.3:82190146-82190165 None:intergenic 30.0%
!! TAATAATATGTAATGGGTGG+TGG + chr4.3:82190143-82190162 None:intergenic 30.0%
!!! CTATACACATGCTCTTTTTT+TGG + chr4.3:82190179-82190198 None:intergenic 30.0%
AAACAACAGAAGATAGAGGA+AGG - chr4.3:82190225-82190244 MS.gene037535:intron 35.0%
AATTTGGATTCTGATGGTCA+AGG - chr4.3:82189370-82189389 MS.gene037535:intron 35.0%
ACATCAGAATTTACCTTGAC+TGG - chr4.3:82190601-82190620 MS.gene037535:CDS 35.0%
AGAGCAGCATTATATGGTAT+AGG - chr4.3:82190351-82190370 MS.gene037535:CDS 35.0%
AGGAGTGATTTCTAAGTCAA+AGG - chr4.3:82190245-82190264 MS.gene037535:intron 35.0%
AGTCTTTGCAGAAACTAATG+GGG - chr4.3:82189896-82189915 MS.gene037535:CDS 35.0%
ATCATCAGACACCATAAACA+AGG + chr4.3:82189437-82189456 None:intergenic 35.0%
ATGCAGCTATTGATGGAATT+GGG - chr4.3:82189490-82189509 MS.gene037535:CDS 35.0%
ATTCTCTTTAATTGCGGTGT+AGG - chr4.3:82190552-82190571 MS.gene037535:CDS 35.0%
ATTCTTAGGCTGTCTATTAG+TGG + chr4.3:82189353-82189372 None:intergenic 35.0%
ATTTGGATTCTGATGGTCAA+GGG - chr4.3:82189371-82189390 MS.gene037535:intron 35.0%
CCATCAGAATCCAAATTCTT+AGG + chr4.3:82189367-82189386 None:intergenic 35.0%
CCTAAGAATTTGGATTCTGA+TGG - chr4.3:82189364-82189383 MS.gene037535:intron 35.0%
CTTCAAGATCATCAAGAGAA+AGG + chr4.3:82190440-82190459 None:intergenic 35.0%
CTTGATACAAGATCCTTCAA+CGG - chr4.3:82190300-82190319 MS.gene037535:intron 35.0%
CTTGTTTAGGCACTTTCAAA+AGG + chr4.3:82190639-82190658 None:intergenic 35.0%
GAAGCAAAAGTGATAAGCAT+TGG - chr4.3:82190456-82190475 MS.gene037535:CDS 35.0%
GTAAAGAGAGCAGCATTATA+TGG - chr4.3:82190345-82190364 MS.gene037535:CDS 35.0%
TCTTGTATCAAGTGCAATCA+AGG + chr4.3:82190292-82190311 None:intergenic 35.0%
TTCAGACTTGACTCAAATAG+AGG - chr4.3:82189516-82189535 MS.gene037535:CDS 35.0%
TTCATGCAAAGTGATTCACA+TGG + chr4.3:82189223-82189242 None:intergenic 35.0%
TTCTTAGGCTGTCTATTAGT+GGG + chr4.3:82189352-82189371 None:intergenic 35.0%
! ACTGCTGATGCAAATTTGTT+AGG + chr4.3:82189801-82189820 None:intergenic 35.0%
! AGCTCCCAAAAGTTTTACAA+TGG + chr4.3:82189967-82189986 None:intergenic 35.0%
! AGGGTCCATTGTAAAACTTT+TGG - chr4.3:82189959-82189978 MS.gene037535:CDS 35.0%
! AGTTTTACAATGGACCCTAA+TGG + chr4.3:82189957-82189976 None:intergenic 35.0%
! CCTCTCACGAATACAATTTT+GGG - chr4.3:82189747-82189766 MS.gene037535:intron 35.0%
! GGGTCCATTGTAAAACTTTT+GGG - chr4.3:82189960-82189979 MS.gene037535:CDS 35.0%
! TCAAGTGCAATCAAGGATTT+TGG + chr4.3:82190285-82190304 None:intergenic 35.0%
!! AACGGATCAGAAGTTGATAT+GGG - chr4.3:82190318-82190337 MS.gene037535:CDS 35.0%
!! CTGATGCAAATTTGTTAGGT+CGG + chr4.3:82189797-82189816 None:intergenic 35.0%
!!! ATCAATTTTCTTGGTGTCAC+TGG + chr4.3:82189841-82189860 None:intergenic 35.0%
!!! CTTCATTTTTAGCTTCCTTG+CGG - chr4.3:82189929-82189948 MS.gene037535:CDS 35.0%
AACTCTTTAGCTGGATGTGT+CGG - chr4.3:82189987-82190006 MS.gene037535:CDS 40.0%
AAGTGATTCACATGGATTCC+TGG + chr4.3:82189215-82189234 None:intergenic 40.0%
ACACAACATTGGCAAACATG+AGG - chr4.3:82189546-82189565 MS.gene037535:CDS 40.0%
AGGAAAGAATTAGCAGAGAG+TGG + chr4.3:82190396-82190415 None:intergenic 40.0%
AGTGATTCACATGGATTCCT+GGG + chr4.3:82189214-82189233 None:intergenic 40.0%
ATCAACTTCTGATCCGTTGA+AGG + chr4.3:82190316-82190335 None:intergenic 40.0%
CAAGGGAATAATGCACAAGA+TGG - chr4.3:82189388-82189407 MS.gene037535:intron 40.0%
CAATTCCATCAATAGCTGCA+TGG + chr4.3:82189491-82189510 None:intergenic 40.0%
CATGCAGCTATTGATGGAAT+TGG - chr4.3:82189489-82189508 MS.gene037535:CDS 40.0%
CATTGGCAAACATGAGGTAA+TGG - chr4.3:82189552-82189571 MS.gene037535:CDS 40.0%
CCCAAAATTGTATTCGTGAG+AGG + chr4.3:82189750-82189769 None:intergenic 40.0%
CTGATGTCAAGAATGATCCA+AGG + chr4.3:82190588-82190607 None:intergenic 40.0%
GGGAGGTTAAGGTATAATTC+AGG + chr4.3:82189722-82189741 None:intergenic 40.0%
TCAGAATTTACCTTGACTGG+TGG - chr4.3:82190604-82190623 MS.gene037535:CDS 40.0%
TGCAGCTATTGATGGAATTG+GGG - chr4.3:82189491-82189510 MS.gene037535:CDS 40.0%
TGCATCAGCAGTTAGAGTAA+CGG - chr4.3:82189809-82189828 MS.gene037535:CDS 40.0%
TTGCACTTCAGGAATGTTGA+GGG + chr4.3:82190120-82190139 None:intergenic 40.0%
! CGGTAATTTGTACAAGAGTG+TGG - chr4.3:82190007-82190026 MS.gene037535:CDS 40.0%
! GCCTCTCACGAATACAATTT+TGG - chr4.3:82189746-82189765 MS.gene037535:intron 40.0%
!! CAACGGATCAGAAGTTGATA+TGG - chr4.3:82190317-82190336 MS.gene037535:CDS 40.0%
!!! TCTATTAGTGGGTTTTCCAC+AGG + chr4.3:82189341-82189360 None:intergenic 40.0%
ATGGAAGTCACAGAGGAACT+TGG + chr4.3:82189472-82189491 None:intergenic 45.0%
CACAGGTACAGTGAAGGTTT+CGG + chr4.3:82189324-82189343 None:intergenic 45.0%
GACTTCCATGCAGCTATTGA+TGG - chr4.3:82189483-82189502 MS.gene037535:CDS 45.0%
GAGGAAGTTGCACACAACAT+TGG - chr4.3:82189535-82189554 MS.gene037535:CDS 45.0%
GGCGTCTTTGTGAGAGAAAA+TGG - chr4.3:82189409-82189428 MS.gene037535:CDS 45.0%
GTTGCACTTCAGGAATGTTG+AGG + chr4.3:82190121-82190140 None:intergenic 45.0%
TGCACTTCAGGAATGTTGAG+GGG + chr4.3:82190119-82190138 None:intergenic 45.0%
TGGAGAACTTGGACTCTTCA+TGG - chr4.3:82190027-82190046 MS.gene037535:CDS 45.0%
TGTATTCGTGAGAGGCTCAT+GGG + chr4.3:82189742-82189761 None:intergenic 45.0%
TTGGGAGCTAACTCTTTAGC+TGG - chr4.3:82189978-82189997 MS.gene037535:CDS 45.0%
TTGTATTCGTGAGAGGCTCA+TGG + chr4.3:82189743-82189762 None:intergenic 45.0%
! ATTTACCTTGACTGGTGGAC+TGG - chr4.3:82190609-82190628 MS.gene037535:CDS 45.0%
! GCTGGTTTAGACAACCAAAC+TGG + chr4.3:82190097-82190116 None:intergenic 45.0%
! GTACAAGAGTGTGGAGAACT+TGG - chr4.3:82190016-82190035 MS.gene037535:CDS 45.0%
! GTTTTCCACAGGTACAGTGA+AGG + chr4.3:82189330-82189349 None:intergenic 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG - chr4.3:82190467-82190486 MS.gene037535:CDS 45.0%
!! TTTACCTTGACTGGTGGACT+GGG - chr4.3:82190610-82190629 MS.gene037535:CDS 45.0%
AGGTCGGCTGTCTTTGTTCT+TGG + chr4.3:82189781-82189800 None:intergenic 50.0%
CGAAACCTTCACTGTACCTG+TGG - chr4.3:82189322-82189341 MS.gene037535:intron 50.0%
TAGCTGCATGGAAGTCACAG+AGG + chr4.3:82189479-82189498 None:intergenic 50.0%
! TGCGCTGTGTTACTCAATCC+TGG - chr4.3:82190062-82190081 MS.gene037535:CDS 50.0%
!! GTGTAGGCTTTGAGCTTCCT+TGG - chr4.3:82190568-82190587 MS.gene037535:CDS 50.0%
ATTCGTGAGAGGCTCATGGG+AGG + chr4.3:82189739-82189758 None:intergenic 55.0%
CCAAACTGGTGTGCTACACC+AGG + chr4.3:82190083-82190102 None:intergenic 55.0%
CCTGGTGTAGCACACCAGTT+TGG - chr4.3:82190080-82190099 MS.gene037535:CDS 55.0%
CTTCAGGAATGTTGAGGGGC+TGG + chr4.3:82190115-82190134 None:intergenic 55.0%
GAGAGGCTCATGGGAGGTTA+AGG + chr4.3:82189733-82189752 None:intergenic 55.0%
! ATGGGTGGTGGTTGCACTTC+AGG + chr4.3:82190131-82190150 None:intergenic 55.0%
!! AGCTTCCTTGCGGTGCCATT+AGG - chr4.3:82189939-82189958 MS.gene037535:CDS 55.0%
!! GCTTCCTTGCGGTGCCATTA+GGG - chr4.3:82189940-82189959 MS.gene037535:CDS 55.0%
GTCTCCCAGTCCACCAGTCA+AGG + chr4.3:82190617-82190636 None:intergenic 60.0%
TGGACCCTAATGGCACCGCA+AGG + chr4.3:82189947-82189966 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 82189199 82190684 82189199 ID=MS.gene037535
chr4.3 mRNA 82189199 82190684 82189199 ID=MS.gene037535.t1;Parent=MS.gene037535
chr4.3 exon 82190316 82190684 82190316 ID=MS.gene037535.t1.exon1;Parent=MS.gene037535.t1
chr4.3 CDS 82190316 82190684 82190316 ID=cds.MS.gene037535.t1;Parent=MS.gene037535.t1
chr4.3 exon 82189750 82190175 82189750 ID=MS.gene037535.t1.exon2;Parent=MS.gene037535.t1
chr4.3 CDS 82189750 82190175 82189750 ID=cds.MS.gene037535.t1;Parent=MS.gene037535.t1
chr4.3 exon 82189395 82189649 82189395 ID=MS.gene037535.t1.exon3;Parent=MS.gene037535.t1
chr4.3 CDS 82189395 82189649 82189395 ID=cds.MS.gene037535.t1;Parent=MS.gene037535.t1
chr4.3 exon 82189199 82189309 82189199 ID=MS.gene037535.t1.exon4;Parent=MS.gene037535.t1
chr4.3 CDS 82189199 82189309 82189199 ID=cds.MS.gene037535.t1;Parent=MS.gene037535.t1
Gene Sequence

>MS.gene037535

ATGTTGCTTCATCCCAGGAATCCATGTGAATCACTTTGCATGAAGCTGTTCTTGAATGTTGATGACACTGAGCCATCAAGTAAATTTTTTGTGTGTGATTCTTGTAACACGTTTACTACTTTCCGAAACCTTCACTGTACCTGTGGAAAACCCACTAATAGACAGCCTAAGAATTTGGATTCTGATGGTCAAGGGAATAATGCACAAGATGGCGTCTTTGTGAGAGAAAATGGATCCTTGTTTATGGTGTCTGATGATTTGAAGATTGTGCCAAGTTCCTCTGTGACTTCCATGCAGCTATTGATGGAATTGGGGTATTCAGACTTGACTCAAATAGAGGAAGTTGCACACAACATTGGCAAACATGAGGTAATGGTGTTACCATGTATTTCCTTCTGTAATACATCTATTTTCAATCAATAAAATAATTTCTTCTTTCTAAATTTGTGTTTGTATCAGTCTTTATTTAACTGTTATGCTTACCATTTATGTTTTAACATTTTGGATAGATATTGAAGCTCCTGAATTATACCTTAACCTCCCATGAGCCTCTCACGAATACAATTTTGGGAAGTAGCTCCAAGAACAAAGACAGCCGACCTAACAAATTTGCATCAGCAGTTAGAGTAACGGCTTGCACCAGTGACACCAAGAAAATTGATGTTAAAGTAATTCAAAGTAAATCTCAAAAAAATATAGTCTTTGCAGAAACTAATGGGGATTTTGTTGACTTCATTTTTAGCTTCCTTGCGGTGCCATTAGGGTCCATTGTAAAACTTTTGGGAGCTAACTCTTTAGCTGGATGTGTCGGTAATTTGTACAAGAGTGTGGAGAACTTGGACTCTTCATGGTGTACTGACTCGTGCGCTGTGTTACTCAATCCTGGTGTAGCACACCAGTTTGGTTGTCTAAACCAGCCCCTCAACATTCCTGAAGTGCAACCACCACCCATTACATATTATTATGGTACAGGGACACCAAAAAAAGAGCATGTGTATAGCTATAAGTGTAAGACTTACTTTTATGAAACAACAGAAGATAGAGGAAGGAGTGATTTCTAAGTCAAAGGAATCGATTTATAAACCAAAATCCTTGATTGCACTTGATACAAGATCCTTCAACGGATCAGAAGTTGATATGGGATTTGTAAAGAGAGCAGCATTATATGGTATAGGAAATGATCTAAGAGTAAAACCACTCTCTGCTAATTCTTTCCTTCTATATTTGAAAGAATTATGCCTTTCTCTTGATGATCTTGAAGCAAAAGTGATAAGCATTGGTGAAGCTGAGGTAATGCGCTATTATTTAATTTATCACTAAATAATTTTTTTTTTTGTTATTTTAGCCTCTTTGATTCTCTTTAATTGCGGTGTAGGCTTTGAGCTTCCTTGGATCATTCTTGACATCAGAATTTACCTTGACTGGTGGACTGGGAGACCTTTTGAAAGTGCCTAAACAAGAATCATCTTTTTTGATGTTAATTTGA
Protein sequence

>MS.gene037535.t1

MLLHPRNPCESLCMKLFLNVDDTEPSSKFFVCDSCNTFTTFRNLHCTCGKPTNRQPKNLDSDGQGNNAQDGVFVRENGSLFMVSDDLKIVPSSSVTSMQLLMELGYSDLTQIEEVAHNIGKHEILKLLNYTLTSHEPLTNTILGSSSKNKDSRPNKFASAVRVTACTSDTKKIDVKVIQSKSQKNIVFAETNGDFVDFIFSFLAVPLGSIVKLLGANSLAGCVGNLYKSVENLDSSWCTDSCAVLLNPGVAHQFGCLNQPLNIPEKIEEGVISKSKESIYKPKSLIALDTRSFNGSEVDMGFVKRAALYGIGNDLRVKPLSANSFLLYLKELCLSLDDLEAKVISIGEAEALSFLGSFLTSEFTLTGGLGDLLKVPKQESSFLMLI