AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055110.t1 MTR_7g066260 83.903 497 37 2 1 457 1 494 0.0 838
MS.gene055110.t1 MTR_7g066290 60.345 464 116 5 1 426 1 434 1.97e-176 501
MS.gene055110.t1 MTR_7g066360 59.438 498 142 9 1 456 1 480 3.42e-176 503
MS.gene055110.t1 MTR_7g066340 53.893 488 167 10 9 455 6 476 3.16e-156 452
MS.gene055110.t1 MTR_1g041315 54.167 456 154 8 3 409 2 451 3.78e-153 444
MS.gene055110.t1 MTR_7g066570 52.063 509 157 11 1 439 1 492 1.02e-151 444
MS.gene055110.t1 MTR_7g066350 55.947 454 144 11 11 421 5 445 2.00e-144 421
MS.gene055110.t1 MTR_7g066400 50.740 473 148 11 11 433 8 445 7.59e-143 416
MS.gene055110.t1 MTR_7g012680 49.686 477 165 8 3 431 2 451 2.43e-139 408
MS.gene055110.t1 MTR_7g058710 47.390 498 168 13 1 425 1 477 7.23e-128 380
MS.gene055110.t1 MTR_1g014060 51.325 415 154 6 28 431 13 390 5.30e-127 374
MS.gene055110.t1 MTR_7g066310 49.782 458 161 10 12 455 4 406 7.32e-127 374
MS.gene055110.t1 MTR_2g029400 45.833 456 146 9 6 415 5 405 1.21e-114 343
MS.gene055110.t1 MTR_7g066580 43.737 487 158 13 21 431 1 447 4.25e-110 333
MS.gene055110.t1 MTR_7g066580 28.571 245 138 9 15 240 215 441 1.89e-12 69.3
MS.gene055110.t1 MTR_7g058700 46.744 430 159 9 27 425 531 921 7.83e-105 333
MS.gene055110.t1 MTR_7g066430 38.477 486 220 10 15 425 4 485 6.80e-95 295
MS.gene055110.t1 MTR_7g066430 26.860 242 160 7 5 238 247 479 9.80e-15 76.6
MS.gene055110.t1 MTR_7g066410 36.238 505 226 10 15 425 10 512 3.91e-89 281
MS.gene055110.t1 MTR_7g066410 26.939 245 160 8 2 238 273 506 1.00e-13 73.6
MS.gene055110.t1 MTR_7g066280 42.094 449 137 15 94 455 1 413 4.16e-87 273
MS.gene055110.t1 MTR_7g066280 26.336 262 136 10 11 238 146 384 1.75e-14 75.5
MS.gene055110.t1 MTR_7g063880 39.419 482 213 17 5 426 1 463 2.09e-82 262
MS.gene055110.t1 MTR_7g066480 39.738 458 185 12 14 428 15 424 1.79e-81 258
MS.gene055110.t1 MTR_7g063660 36.998 473 224 11 14 423 8 469 1.34e-79 255
MS.gene055110.t1 MTR_7g062300 37.395 476 233 9 6 423 3 471 1.81e-79 254
MS.gene055110.t1 MTR_7g062280 36.495 485 227 12 14 425 9 485 5.06e-77 249
MS.gene055110.t1 MTR_7g063900 39.192 495 214 18 1 423 1 480 2.12e-74 242
MS.gene055110.t1 MTR_7g066490 38.987 454 178 14 15 428 16 410 2.50e-73 237
MS.gene055110.t1 MTR_7g063890 39.256 484 207 15 14 423 26 496 6.97e-72 236
MS.gene055110.t1 MTR_3g065200 36.073 438 208 12 15 412 3 408 2.60e-70 230
MS.gene055110.t1 MTR_7g063920 35.169 472 209 8 5 423 1 428 3.14e-70 229
MS.gene055110.t1 MTR_7g063820 38.923 483 218 17 9 423 3 476 2.37e-69 229
MS.gene055110.t1 MTR_3g007740 36.325 468 205 14 14 423 8 440 4.10e-67 221
MS.gene055110.t1 MTR_7g063840 35.106 470 228 14 16 423 11 465 5.15e-66 219
MS.gene055110.t1 MTR_7g063840 27.706 231 141 9 15 238 250 461 2.40e-12 69.3
MS.gene055110.t1 MTR_7g063830 35.991 464 213 16 11 423 6 436 4.07e-65 216
MS.gene055110.t1 MTR_4g019310 33.130 492 237 16 12 421 5 486 3.63e-59 202
MS.gene055110.t1 MTR_7g063670 35.421 463 215 14 16 423 16 449 8.39e-58 197
MS.gene055110.t1 MTR_4g017830 31.309 527 251 16 6 437 3 513 1.21e-55 194
MS.gene055110.t1 MTR_7g066390 54.450 191 52 3 273 463 1 156 1.56e-53 177
MS.gene055110.t1 MTR_2g067310 55.495 182 37 3 20 201 53 190 2.47e-53 179
MS.gene055110.t1 MTR_4g019340 31.950 482 225 16 16 413 39 501 4.06e-53 186
MS.gene055110.t1 MTR_4g019340 27.126 247 133 8 1 233 289 502 1.15e-11 67.0
MS.gene055110.t1 MTR_4g017440 30.664 512 237 20 8 421 7 498 4.97e-48 172
MS.gene055110.t1 MTR_4g017610 29.697 495 242 17 8 421 6 475 1.54e-47 171
MS.gene055110.t1 MTR_7g066680 40.667 300 81 7 219 421 35 334 9.44e-44 157
MS.gene055110.t1 MTR_7g066680 26.852 216 137 10 11 218 82 284 2.83e-11 65.1
MS.gene055110.t1 MTR_7g062270 46.552 174 85 4 16 187 11 178 3.61e-40 149
MS.gene055110.t1 MTR_4g017410 37.008 254 127 9 9 241 3 244 6.03e-39 147
MS.gene055110.t1 MTR_4g017470 27.528 534 229 17 11 444 8 483 1.41e-35 138
MS.gene055110.t1 MTR_4g017550 29.583 480 214 20 42 423 18 471 4.52e-34 134
MS.gene055110.t1 MTR_4g017550 28.326 233 126 8 15 226 247 459 1.54e-11 66.6
MS.gene055110.t1 MTR_7g063720 40.476 168 88 4 269 425 60 226 2.29e-26 107
MS.gene055110.t1 MTR_1g115440 30.233 258 143 7 5 244 1 239 3.45e-25 103
MS.gene055110.t1 MTR_0150s0010 30.252 238 151 4 14 244 9 238 7.28e-23 97.4
MS.gene055110.t1 MTR_0150s0010 41.026 78 45 1 342 418 154 231 9.88e-11 62.4
MS.gene055110.t1 MTR_8g445860 29.555 247 136 8 15 244 13 238 8.86e-23 97.1
MS.gene055110.t1 MTR_8g445860 29.670 182 94 7 270 418 51 231 3.69e-12 66.6
MS.gene055110.t1 MTR_7g063690 32.018 228 85 7 16 242 13 171 8.61e-22 94.7
MS.gene055110.t1 MTR_7g100420 30.581 327 143 11 165 425 89 397 1.60e-21 96.7
MS.gene055110.t1 MTR_7g100420 57.627 59 21 1 16 70 40 98 6.46e-12 67.4
MS.gene055110.t1 MTR_8g023240 29.412 238 143 7 16 251 38 252 9.56e-21 95.5
MS.gene055110.t1 MTR_7g063850 28.521 284 149 9 191 425 4 282 1.70e-18 86.3
MS.gene055110.t1 MTR_4g019240 40.000 115 55 5 11 115 9 119 4.67e-17 79.3
MS.gene055110.t1 MTR_1g115450 38.824 85 47 1 15 99 7 86 4.38e-14 69.7
MS.gene055110.t1 MTR_7g063760 49.206 63 31 1 362 423 3 65 7.94e-14 67.0
MS.gene055110.t1 MTR_8g445910 40.000 95 48 3 15 105 8 97 2.75e-13 70.5
MS.gene055110.t1 MTR_8g044880 42.353 85 43 2 15 98 8 87 5.03e-13 69.7
MS.gene055110.t1 MTR_0150s0030 37.895 95 50 3 15 105 8 97 1.19e-12 67.4
MS.gene055110.t1 MTR_1g115455 40.000 85 46 1 15 99 9 88 2.25e-12 67.0
MS.gene055110.t1 MTR_1g115470 40.000 95 50 2 17 109 8 97 6.46e-12 67.8
MS.gene055110.t1 MTR_8g445920 38.750 80 44 1 14 93 9 83 2.45e-11 60.8
MS.gene055110.t1 MTR_8g044890 38.750 80 44 1 14 93 9 83 2.45e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055110.t1 AT5G01130 29.412 459 253 13 15 425 9 444 1.70e-40 151
MS.gene055110.t1 AT3G09140 27.364 497 261 13 12 421 6 489 1.24e-38 147
MS.gene055110.t1 AT3G09140 26.437 522 262 13 12 421 6 517 2.10e-36 141
MS.gene055110.t1 AT3G09110 35.470 234 137 6 15 244 9 232 2.31e-34 132
MS.gene055110.t1 AT3G09120 34.862 218 129 5 10 219 1 213 1.46e-33 129
MS.gene055110.t1 AT5G43240 35.537 242 134 7 16 244 10 242 4.62e-33 131
MS.gene055110.t1 AT5G43240 33.577 137 67 3 330 454 387 511 3.41e-11 65.9
MS.gene055110.t1 AT5G43240 35.537 242 134 7 16 244 10 242 4.62e-33 131
MS.gene055110.t1 AT5G43240 33.577 137 67 3 330 454 387 511 3.41e-11 65.9
MS.gene055110.t1 AT5G43240 35.537 242 134 7 16 244 10 242 4.62e-33 131
MS.gene055110.t1 AT5G43240 33.577 137 67 3 330 454 387 511 3.41e-11 65.9
MS.gene055110.t1 AT5G01120 34.426 244 139 7 16 248 10 243 6.40e-32 128
MS.gene055110.t1 AT5G01150 34.583 240 138 6 17 248 11 239 6.75e-31 125
MS.gene055110.t1 AT5G01140 32.328 232 130 5 15 244 9 215 5.50e-25 107
MS.gene055110.t1 AT5G37320 38.562 153 81 7 10 154 1 148 3.79e-22 99.4
MS.gene055110.t1 AT5G43240 33.577 137 67 3 330 454 243 367 3.53e-11 65.1

Find 94 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTAAATCCTCTCTTTC+TGG 0.176316 7.4:+38656170 MS.gene055110:CDS
CTTACCATCTGATTCTAATA+AGG 0.204419 7.4:+38655800 MS.gene055110:CDS
GACAGACTTTATCTTTAAAA+AGG 0.227200 7.4:+38655725 MS.gene055110:CDS
GATATTGAAGCAGTGAAATT+TGG 0.241924 7.4:+38655115 MS.gene055110:CDS
CTTCTGCCTTTGGCTTCTTC+AGG 0.245455 7.4:-38656926 None:intergenic
CTGACCCAACGTTACAGTTT+AGG 0.265072 7.4:+38655766 MS.gene055110:CDS
GATTTCTATAAGTGGTTATA+CGG 0.266948 7.4:-38655339 None:intergenic
CAAAGGACCATTAACAATTA+TGG 0.282360 7.4:+38656202 MS.gene055110:CDS
TACGCCTCCATTGAGTTTCT+AGG 0.284614 7.4:-38655223 None:intergenic
CAAACTTCTTCTTCTGCCTT+TGG 0.284820 7.4:-38656936 None:intergenic
CTGGTTCTTGAGTTCAAAAT+TGG 0.299308 7.4:-38656081 None:intergenic
CAAAGGCAGAAGAAGAAGTT+TGG 0.302813 7.4:+38656937 MS.gene055110:CDS
CGAAGTCACCTTGAGAGTTT+TGG 0.304893 7.4:+38654973 MS.gene055110:CDS
TAGCATTTCTTTGCAGGTAT+TGG 0.307775 7.4:-38655194 None:intergenic
GTTGAGTAGCATTTCTTTGC+AGG 0.309715 7.4:-38655200 None:intergenic
ACGTTCCAATTGGTAGTATC+TGG 0.342892 7.4:-38656100 None:intergenic
AATATCTATCAAAGCAGTTT+TGG 0.346758 7.4:-38656892 None:intergenic
CCTCCAGAAAGAGAGGATTT+AGG 0.352149 7.4:-38656173 None:intergenic
GCAAGGACTGGCAGTCTTGT+AGG 0.369793 7.4:+38655299 MS.gene055110:CDS
AAACTTGTTCCAAGATCATT+AGG 0.370772 7.4:-38655487 None:intergenic
TGAATGCAGAGAGATGTTTA+AGG 0.380741 7.4:+38656015 MS.gene055110:CDS
GGCAGGAAGTTCAACTGTTC+AGG 0.391352 7.4:+38656857 MS.gene055110:intron
TTACCATCTGATTCTAATAA+GGG 0.396508 7.4:+38655801 MS.gene055110:CDS
TGTGTGATGCCTAATGATCT+TGG 0.396811 7.4:+38655478 MS.gene055110:CDS
AGCTTCTTAACCTTACCATT+AGG 0.398970 7.4:+38655061 MS.gene055110:CDS
CTATCAAACGTGCAAGTTAA+CGG 0.406251 7.4:-38656125 None:intergenic
ATCTTGATGAACACTATCTA+TGG 0.410521 7.4:+38655170 MS.gene055110:CDS
TGTTGGGAATGGCTTTGTTA+AGG 0.411761 7.4:+38655423 MS.gene055110:CDS
ATTTCCTCCACGTCATTAAG+AGG 0.412745 7.4:-38656296 None:intergenic
AAAGGCAGAAGAAGAAGTTT+GGG 0.416314 7.4:+38656938 MS.gene055110:CDS
TCTGTCACCATAATTGTTAA+TGG 0.421237 7.4:-38656209 None:intergenic
GATTTCTATCCTATGGCATC+TGG 0.438641 7.4:+38654920 None:intergenic
TTAACTTGCACGTTTGATAG+TGG 0.443642 7.4:+38656128 MS.gene055110:CDS
TCTTGTAGGGGATATATGAA+TGG 0.446869 7.4:+38655313 MS.gene055110:CDS
CAAGGACTGGCAGTCTTGTA+GGG 0.455929 7.4:+38655300 MS.gene055110:CDS
CCAACGTTACAGTTTAGGAT+TGG 0.456467 7.4:+38655771 MS.gene055110:CDS
CAATCCTAAACTGTAACGTT+GGG 0.456539 7.4:-38655770 None:intergenic
AAAGTTGTATATGCTGAAGC+AGG 0.470963 7.4:+38655013 MS.gene055110:CDS
TAGATATGAAACAGCGTCAA+TGG 0.470976 7.4:-38656258 None:intergenic
TTAACAAAGCCATTCCCAAC+AGG 0.471013 7.4:-38655421 None:intergenic
GCATTTCTGATTTCTATAAG+TGG 0.478212 7.4:-38655347 None:intergenic
AAAACGGATTTGACTCCTGT+TGG 0.478327 7.4:+38655406 MS.gene055110:CDS
CCAATCCTAAACTGTAACGT+TGG 0.486182 7.4:-38655771 None:intergenic
ACGCCTCCATTGAGTTTCTA+GGG 0.488729 7.4:-38655222 None:intergenic
AGTCTAGAAATAGATCCTAA+TGG 0.491507 7.4:-38655076 None:intergenic
GATTTGACTCCTGTTGGGAA+TGG 0.494885 7.4:+38655412 MS.gene055110:CDS
AAGAACCAGATACTACCAAT+TGG 0.496758 7.4:+38656095 MS.gene055110:CDS
GTTAACGGACACGTTCCAAT+TGG 0.498290 7.4:-38656110 None:intergenic
CAAAGCTACTGCCGTCAAAA+CGG 0.498581 7.4:+38655390 MS.gene055110:CDS
AAACGGATTTGACTCCTGTT+GGG 0.499817 7.4:+38655407 MS.gene055110:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.4:+38655942 MS.gene055110:intron
TTTCGTTAGTATTGGTGTAG+AGG 0.525427 7.4:+38656319 MS.gene055110:CDS
CTTGTAGGGGATATATGAAT+GGG 0.534871 7.4:+38655314 MS.gene055110:CDS
AATTATGGTGACAGACGACT+TGG 0.536351 7.4:+38656217 MS.gene055110:CDS
TCAACATCCGCTTTGACAAA+CGG 0.540818 7.4:+38656463 MS.gene055110:CDS
TTACAGTTTAGGATTGGAAA+CGG 0.547429 7.4:+38655777 MS.gene055110:CDS
AGAAATAGATCCTAATGGTA+AGG 0.547920 7.4:-38655071 None:intergenic
ACTCAACCCTAGAAACTCAA+TGG 0.548659 7.4:+38655216 MS.gene055110:CDS
CGTTAGTATTGGTGTAGAGG+AGG 0.549157 7.4:+38656322 MS.gene055110:CDS
ATACCCTTATTAGAATCAGA+TGG 0.560811 7.4:-38655804 None:intergenic
CACTTTGATACAGTGTACTC+AGG 0.563119 7.4:-38655141 None:intergenic
TATTTCTAGACTTGTAGCTA+AGG 0.563337 7.4:+38655087 MS.gene055110:CDS
ATCAGAAATGCATCTGTGGA+AGG 0.565067 7.4:+38655359 MS.gene055110:CDS
AACACTAGTTATCAACAAGA+AGG 0.566033 7.4:+38655561 MS.gene055110:CDS
TTAAAGATAAAGTCTGTCAG+AGG 0.571141 7.4:-38655720 None:intergenic
TTAGGATCAACAAGTTTCGC+GGG 0.571667 7.4:-38656155 None:intergenic
GACATATCCTCCAGAAAGAG+AGG 0.573373 7.4:-38656180 None:intergenic
TGTATATGCTGAAGCAGGGA+AGG 0.577810 7.4:+38655018 MS.gene055110:CDS
TTCATATCTAGAAAGAATGA+AGG 0.578901 7.4:+38656271 MS.gene055110:CDS
TTTAGGATCAACAAGTTTCG+CGG 0.579897 7.4:-38656156 None:intergenic
CTTTCTGGAGGATATGTCAA+AGG 0.584702 7.4:+38656185 MS.gene055110:CDS
GGCTTCTTCAGGTTGTACAA+TGG 0.592081 7.4:-38656915 None:intergenic
TTACATTTGCTTCAGACACA+CGG 0.601680 7.4:+38655508 MS.gene055110:CDS
GTTGCAATGCCAGATGCCAT+AGG 0.603282 7.4:-38654929 None:intergenic
CTTGAGGCCGTTTGTCAAAG+CGG 0.611309 7.4:-38656470 None:intergenic
ACAGCGTCAATGGATGACAT+TGG 0.611356 7.4:-38656248 None:intergenic
GTTGTCGACCAAAACTCTCA+AGG 0.613169 7.4:-38654981 None:intergenic
CTTGCACGTAAAATACTGCA+AGG 0.613573 7.4:-38655281 None:intergenic
TTTCCTCCACGTCATTAAGA+GGG 0.615237 7.4:-38656295 None:intergenic
GTTTGTCAAAGCGGATGTTG+AGG 0.622650 7.4:-38656461 None:intergenic
AGAAATCAGAAATGCATCTG+TGG 0.624051 7.4:+38655355 MS.gene055110:CDS
AAGTTGTATATGCTGAAGCA+GGG 0.633791 7.4:+38655014 MS.gene055110:CDS
AACGGCCTCAAGCAGTACAT+AGG 0.634113 7.4:+38656481 MS.gene055110:CDS
CCTAAATCCTCTCTTTCTGG+AGG 0.635757 7.4:+38656173 MS.gene055110:CDS
AAGGACTGGCAGTCTTGTAG+GGG 0.662149 7.4:+38655301 MS.gene055110:CDS
ACTAGTTATCAACAAGAAGG+AGG 0.663267 7.4:+38655564 MS.gene055110:CDS
GAAGGTCCCTCTTAATGACG+TGG 0.665769 7.4:+38656289 MS.gene055110:CDS
ACTAACCTATGTACTGCTTG+AGG 0.678228 7.4:-38656486 None:intergenic
GTACAACCTGAAGAAGCCAA+AGG 0.679512 7.4:+38656920 MS.gene055110:CDS
GCAACTGAATCACTTGAACA+AGG 0.688328 7.4:+38654947 MS.gene055110:CDS
GGTCCCTCTTAATGACGTGG+AGG 0.689620 7.4:+38656292 MS.gene055110:CDS
TTGCACGTAAAATACTGCAA+GGG 0.693711 7.4:-38655280 None:intergenic
CAACCCTAGAAACTCAATGG+AGG 0.697460 7.4:+38655219 MS.gene055110:CDS
ACACGGACTAAATGACATAG+CGG 0.746163 7.4:+38655525 MS.gene055110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGTTAATAATTTTTAAT+TGG + chr7.4:38656800-38656819 MS.gene055110:intron 10.0%
!! TTTAAAAAGGAAAAAATTCT+TGG + chr7.4:38655738-38655757 MS.gene055110:CDS 15.0%
!! AAAAGAAACATTCAAATCAT+TGG + chr7.4:38656548-38656567 MS.gene055110:intron 20.0%
!! ACAATATTTGATTGCATATA+TGG + chr7.4:38656404-38656423 MS.gene055110:intron 20.0%
!! TATTAAGTATTTATTTGTGC+AGG + chr7.4:38655659-38655678 MS.gene055110:intron 20.0%
!!! AAACTGCTACTTTTATAATT+CGG + chr7.4:38655446-38655465 MS.gene055110:CDS 20.0%
!!! TACTAATGTAAAGTTTTGTT+TGG - chr7.4:38656523-38656542 None:intergenic 20.0%
! AACTAAATATTGTTTCAACC+AGG + chr7.4:38656723-38656742 MS.gene055110:intron 25.0%
! AGAAATAATAAGTACTACGA+CGG - chr7.4:38656637-38656656 None:intergenic 25.0%
! GATTTCTATAAGTGGTTATA+CGG - chr7.4:38655342-38655361 None:intergenic 25.0%
! TCTTTATATTTGCATGTACA+TGG + chr7.4:38656836-38656855 MS.gene055110:intron 25.0%
! TTACCATCTGATTCTAATAA+GGG + chr7.4:38655801-38655820 MS.gene055110:CDS 25.0%
! TTCATATCTAGAAAGAATGA+AGG + chr7.4:38656271-38656290 MS.gene055110:CDS 25.0%
!! AATATCTATCAAAGCAGTTT+TGG - chr7.4:38656895-38656914 None:intergenic 25.0%
!! GACAGACTTTATCTTTAAAA+AGG + chr7.4:38655725-38655744 MS.gene055110:CDS 25.0%
!!! AACTGCTACTTTTATAATTC+GGG + chr7.4:38655447-38655466 MS.gene055110:CDS 25.0%
!!! AGTTTTTTAACATTTCCCAT+GGG + chr7.4:38655918-38655937 MS.gene055110:intron 25.0%
!!! TAGTTTTTTAACATTTCCCA+TGG + chr7.4:38655917-38655936 MS.gene055110:intron 25.0%
AACACTAGTTATCAACAAGA+AGG + chr7.4:38655561-38655580 MS.gene055110:CDS 30.0%
AGAAATAGATCCTAATGGTA+AGG - chr7.4:38655074-38655093 None:intergenic 30.0%
AGTCTAGAAATAGATCCTAA+TGG - chr7.4:38655079-38655098 None:intergenic 30.0%
ATACCCTTATTAGAATCAGA+TGG - chr7.4:38655807-38655826 None:intergenic 30.0%
ATCTTGATGAACACTATCTA+TGG + chr7.4:38655170-38655189 MS.gene055110:CDS 30.0%
CAAAGGACCATTAACAATTA+TGG + chr7.4:38656202-38656221 MS.gene055110:CDS 30.0%
CTTACCATCTGATTCTAATA+AGG + chr7.4:38655800-38655819 MS.gene055110:CDS 30.0%
GATATTGAAGCAGTGAAATT+TGG + chr7.4:38655115-38655134 MS.gene055110:CDS 30.0%
GCATTTCTGATTTCTATAAG+TGG - chr7.4:38655350-38655369 None:intergenic 30.0%
TCAAAATTGGCAAAAATACG+AGG - chr7.4:38656071-38656090 None:intergenic 30.0%
TCTGTCACCATAATTGTTAA+TGG - chr7.4:38656212-38656231 None:intergenic 30.0%
TTAAAGATAAAGTCTGTCAG+AGG - chr7.4:38655723-38655742 None:intergenic 30.0%
! AAACTTGTTCCAAGATCATT+AGG - chr7.4:38655490-38655509 None:intergenic 30.0%
! GAGGAAATTTTCGTTAGTAT+TGG + chr7.4:38656311-38656330 MS.gene055110:CDS 30.0%
! TTACAGTTTAGGATTGGAAA+CGG + chr7.4:38655777-38655796 MS.gene055110:CDS 30.0%
!! TATTTCTAGACTTGTAGCTA+AGG + chr7.4:38655087-38655106 MS.gene055110:CDS 30.0%
AAAGGCAGAAGAAGAAGTTT+GGG + chr7.4:38656938-38656957 MS.gene055110:CDS 35.0%
AAAGTTGTATATGCTGAAGC+AGG + chr7.4:38655013-38655032 MS.gene055110:CDS 35.0%
AAGAACCAGATACTACCAAT+TGG + chr7.4:38656095-38656114 MS.gene055110:CDS 35.0%
AAGTTGTATATGCTGAAGCA+GGG + chr7.4:38655014-38655033 MS.gene055110:CDS 35.0%
AATAACCATGCTTCATTCGA+TGG - chr7.4:38656779-38656798 None:intergenic 35.0%
ACTAGTTATCAACAAGAAGG+AGG + chr7.4:38655564-38655583 MS.gene055110:CDS 35.0%
AGAAATCAGAAATGCATCTG+TGG + chr7.4:38655355-38655374 MS.gene055110:CDS 35.0%
AGCTTCTTAACCTTACCATT+AGG + chr7.4:38655061-38655080 MS.gene055110:CDS 35.0%
CAATCCTAAACTGTAACGTT+GGG - chr7.4:38655773-38655792 None:intergenic 35.0%
CTATCAAACGTGCAAGTTAA+CGG - chr7.4:38656128-38656147 None:intergenic 35.0%
CTTACTTCTTGATCCAACTT+CGG - chr7.4:38656695-38656714 None:intergenic 35.0%
CTTGTAGGGGATATATGAAT+GGG + chr7.4:38655314-38655333 MS.gene055110:CDS 35.0%
TAGATATGAAACAGCGTCAA+TGG - chr7.4:38656261-38656280 None:intergenic 35.0%
TAGCATTTCTTTGCAGGTAT+TGG - chr7.4:38655197-38655216 None:intergenic 35.0%
TATATTTGCATGTACATGGC+AGG + chr7.4:38656840-38656859 MS.gene055110:intron 35.0%
TCTTGTAGGGGATATATGAA+TGG + chr7.4:38655313-38655332 MS.gene055110:CDS 35.0%
TGAATGCAGAGAGATGTTTA+AGG + chr7.4:38656015-38656034 MS.gene055110:CDS 35.0%
TGATTGCATATATGGTTGCA+GGG + chr7.4:38656412-38656431 MS.gene055110:intron 35.0%
TTACATTTGCTTCAGACACA+CGG + chr7.4:38655508-38655527 MS.gene055110:CDS 35.0%
TTGATTGCATATATGGTTGC+AGG + chr7.4:38656411-38656430 MS.gene055110:intron 35.0%
TTGCACGTAAAATACTGCAA+GGG - chr7.4:38655283-38655302 None:intergenic 35.0%
! CTGGTTCTTGAGTTCAAAAT+TGG - chr7.4:38656084-38656103 None:intergenic 35.0%
! TTTAGGATCAACAAGTTTCG+CGG - chr7.4:38656159-38656178 None:intergenic 35.0%
! TTTTTAACATTTCCCATGGG+AGG + chr7.4:38655921-38655940 MS.gene055110:intron 35.0%
!! TTAACTTGCACGTTTGATAG+TGG + chr7.4:38656128-38656147 MS.gene055110:CDS 35.0%
!! TTTCGTTAGTATTGGTGTAG+AGG + chr7.4:38656319-38656338 MS.gene055110:CDS 35.0%
AATTATGGTGACAGACGACT+TGG + chr7.4:38656217-38656236 MS.gene055110:CDS 40.0%
AATTGCCATCGAATGAAGCA+TGG + chr7.4:38656771-38656790 MS.gene055110:intron 40.0%
ACTAACCTATGTACTGCTTG+AGG - chr7.4:38656489-38656508 None:intergenic 40.0%
ACTCAACCCTAGAAACTCAA+TGG + chr7.4:38655216-38655235 MS.gene055110:CDS 40.0%
ATCAGAAATGCATCTGTGGA+AGG + chr7.4:38655359-38655378 MS.gene055110:CDS 40.0%
ATTGGTGTAGAGGAGGTAAA+TGG + chr7.4:38656329-38656348 MS.gene055110:intron 40.0%
ATTTCCTCCACGTCATTAAG+AGG - chr7.4:38656299-38656318 None:intergenic 40.0%
CAAACTTCTTCTTCTGCCTT+TGG - chr7.4:38656939-38656958 None:intergenic 40.0%
CAAAGGCAGAAGAAGAAGTT+TGG + chr7.4:38656937-38656956 MS.gene055110:CDS 40.0%
CACTTTGATACAGTGTACTC+AGG - chr7.4:38655144-38655163 None:intergenic 40.0%
CCAATCCTAAACTGTAACGT+TGG - chr7.4:38655774-38655793 None:intergenic 40.0%
CTTGCACGTAAAATACTGCA+AGG - chr7.4:38655284-38655303 None:intergenic 40.0%
GAGAACACGAATTTGAATCC+TGG - chr7.4:38656744-38656763 None:intergenic 40.0%
GATCCTAAATCCTCTCTTTC+TGG + chr7.4:38656170-38656189 MS.gene055110:CDS 40.0%
GCAACTGAATCACTTGAACA+AGG + chr7.4:38654947-38654966 MS.gene055110:CDS 40.0%
GTTGAGTAGCATTTCTTTGC+AGG - chr7.4:38655203-38655222 None:intergenic 40.0%
TCAACATCCGCTTTGACAAA+CGG + chr7.4:38656463-38656482 MS.gene055110:CDS 40.0%
TGTGTGATGCCTAATGATCT+TGG + chr7.4:38655478-38655497 MS.gene055110:CDS 40.0%
TTAACAAAGCCATTCCCAAC+AGG - chr7.4:38655424-38655443 None:intergenic 40.0%
TTAGGATCAACAAGTTTCGC+GGG - chr7.4:38656158-38656177 None:intergenic 40.0%
TTTCCTCCACGTCATTAAGA+GGG - chr7.4:38656298-38656317 None:intergenic 40.0%
! AAAACGGATTTGACTCCTGT+TGG + chr7.4:38655406-38655425 MS.gene055110:CDS 40.0%
! AAACGGATTTGACTCCTGTT+GGG + chr7.4:38655407-38655426 MS.gene055110:CDS 40.0%
! ACACGGACTAAATGACATAG+CGG + chr7.4:38655525-38655544 MS.gene055110:CDS 40.0%
! ACGTTCCAATTGGTAGTATC+TGG - chr7.4:38656103-38656122 None:intergenic 40.0%
! AGGAGTCAAATCCGTTTTGA+CGG - chr7.4:38655404-38655423 None:intergenic 40.0%
! AGTATTTTACGTGCAAGGAC+TGG + chr7.4:38655287-38655306 MS.gene055110:CDS 40.0%
! CCAACGTTACAGTTTAGGAT+TGG + chr7.4:38655771-38655790 MS.gene055110:CDS 40.0%
! CTTGCAGTATTTTACGTGCA+AGG + chr7.4:38655282-38655301 MS.gene055110:CDS 40.0%
! CTTTCTGGAGGATATGTCAA+AGG + chr7.4:38656185-38656204 MS.gene055110:CDS 40.0%
!! AAGAAGGAGGCATGTTTTCT+CGG + chr7.4:38655577-38655596 MS.gene055110:CDS 40.0%
!! TGTTGGGAATGGCTTTGTTA+AGG + chr7.4:38655423-38655442 MS.gene055110:CDS 40.0%
AAGTCCTGGTAATCCGAAGT+TGG + chr7.4:38656679-38656698 MS.gene055110:intron 45.0%
ACAGCGTCAATGGATGACAT+TGG - chr7.4:38656251-38656270 None:intergenic 45.0%
ACGCCTCCATTGAGTTTCTA+GGG - chr7.4:38655225-38655244 None:intergenic 45.0%
ATTTGCAACACTCCTCCCAT+GGG - chr7.4:38655936-38655955 None:intergenic 45.0%
CAAAGCTACTGCCGTCAAAA+CGG + chr7.4:38655390-38655409 MS.gene055110:CDS 45.0%
CAACCCTAGAAACTCAATGG+AGG + chr7.4:38655219-38655238 MS.gene055110:CDS 45.0%
CCTAAATCCTCTCTTTCTGG+AGG + chr7.4:38656173-38656192 MS.gene055110:CDS 45.0%
CCTCCAGAAAGAGAGGATTT+AGG - chr7.4:38656176-38656195 None:intergenic 45.0%
CTGACCCAACGTTACAGTTT+AGG + chr7.4:38655766-38655785 MS.gene055110:CDS 45.0%
GACATATCCTCCAGAAAGAG+AGG - chr7.4:38656183-38656202 None:intergenic 45.0%
GATTTGACTCCTGTTGGGAA+TGG + chr7.4:38655412-38655431 MS.gene055110:CDS 45.0%
GTACAACCTGAAGAAGCCAA+AGG + chr7.4:38656920-38656939 MS.gene055110:CDS 45.0%
GTTGTCGACCAAAACTCTCA+AGG - chr7.4:38654984-38655003 None:intergenic 45.0%
GTTTGTCAAAGCGGATGTTG+AGG - chr7.4:38656464-38656483 None:intergenic 45.0%
TACGCCTCCATTGAGTTTCT+AGG - chr7.4:38655226-38655245 None:intergenic 45.0%
TCCACGTCATGAAAGCAGAA+AGG + chr7.4:38656656-38656675 MS.gene055110:intron 45.0%
TCCTTTCTGCTTTCATGACG+TGG - chr7.4:38656660-38656679 None:intergenic 45.0%
TGAAAGCAGAAAGGAAGTCC+TGG + chr7.4:38656665-38656684 MS.gene055110:intron 45.0%
TGATCCAACTTCGGATTACC+AGG - chr7.4:38656686-38656705 None:intergenic 45.0%
TGTATATGCTGAAGCAGGGA+AGG + chr7.4:38655018-38655037 MS.gene055110:CDS 45.0%
! CGAAGTCACCTTGAGAGTTT+TGG + chr7.4:38654973-38654992 MS.gene055110:CDS 45.0%
! GTTAACGGACACGTTCCAAT+TGG - chr7.4:38656113-38656132 None:intergenic 45.0%
!! CGTTAGTATTGGTGTAGAGG+AGG + chr7.4:38656322-38656341 MS.gene055110:CDS 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG + chr7.4:38655942-38655961 MS.gene055110:intron 45.0%
!! GGCTTCTTCAGGTTGTACAA+TGG - chr7.4:38656918-38656937 None:intergenic 45.0%
AACGGCCTCAAGCAGTACAT+AGG + chr7.4:38656481-38656500 MS.gene055110:CDS 50.0%
CATTTGCAACACTCCTCCCA+TGG - chr7.4:38655937-38655956 None:intergenic 50.0%
CTTGAGGCCGTTTGTCAAAG+CGG - chr7.4:38656473-38656492 None:intergenic 50.0%
GAAGGTCCCTCTTAATGACG+TGG + chr7.4:38656289-38656308 MS.gene055110:CDS 50.0%
GGCAGGAAGTTCAACTGTTC+AGG + chr7.4:38656857-38656876 MS.gene055110:intron 50.0%
! AAGGACTGGCAGTCTTGTAG+GGG + chr7.4:38655301-38655320 MS.gene055110:CDS 50.0%
! CAAGGACTGGCAGTCTTGTA+GGG + chr7.4:38655300-38655319 MS.gene055110:CDS 50.0%
! CTTCTGCCTTTGGCTTCTTC+AGG - chr7.4:38656929-38656948 None:intergenic 50.0%
GGTCCCTCTTAATGACGTGG+AGG + chr7.4:38656292-38656311 MS.gene055110:CDS 55.0%
! GCAAGGACTGGCAGTCTTGT+AGG + chr7.4:38655299-38655318 MS.gene055110:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38654932 38656983 38654932 ID=MS.gene055110
chr7.4 mRNA 38654932 38656983 38654932 ID=MS.gene055110.t1;Parent=MS.gene055110
chr7.4 exon 38654932 38655598 38654932 ID=MS.gene055110.t1.exon1;Parent=MS.gene055110.t1
chr7.4 CDS 38654932 38655598 38654932 ID=cds.MS.gene055110.t1;Parent=MS.gene055110.t1
chr7.4 exon 38655685 38655822 38655685 ID=MS.gene055110.t1.exon2;Parent=MS.gene055110.t1
chr7.4 CDS 38655685 38655822 38655685 ID=cds.MS.gene055110.t1;Parent=MS.gene055110.t1
chr7.4 exon 38655943 38656343 38655943 ID=MS.gene055110.t1.exon3;Parent=MS.gene055110.t1
chr7.4 CDS 38655943 38656343 38655943 ID=cds.MS.gene055110.t1;Parent=MS.gene055110.t1
chr7.4 exon 38656433 38656502 38656433 ID=MS.gene055110.t1.exon4;Parent=MS.gene055110.t1
chr7.4 CDS 38656433 38656502 38656433 ID=cds.MS.gene055110.t1;Parent=MS.gene055110.t1
chr7.4 exon 38656862 38656983 38656862 ID=MS.gene055110.t1.exon5;Parent=MS.gene055110.t1
chr7.4 CDS 38656862 38656983 38656862 ID=cds.MS.gene055110.t1;Parent=MS.gene055110.t1
Gene Sequence

>MS.gene055110

ATGGCATCTGGCATTGCAACTGAATCACTTGAACAAGGTGACGAAGTCACCTTGAGAGTTTTGGTCGACAACGAAATAAACAAAGTTGTATATGCTGAAGCAGGGAAGGATTTTGTTGATGCTCTTTTCAGCTTCTTAACCTTACCATTAGGATCTATTTCTAGACTTGTAGCTAAGGAGTCAGATATTGAAGCAGTGAAATTTGGCAGCCTGAGTACACTGTATCAAAGTGTATCAGATCTTGATGAACACTATCTATGGTCCAATACCTGCAAAGAAATGCTACTCAACCCTAGAAACTCAATGGAGGCGTATTGTCGACAACTCAAACTGAATATTGATGATACACCCTTGCAGTATTTTACGTGCAAGGACTGGCAGTCTTGTAGGGGATATATGAATGGGAGCCGTATAACCACTTATAGAAATCAGAAATGCATCTGTGGAAGGCTTTTGAACAAAGCTACTGCCGTCAAAACGGATTTGACTCCTGTTGGGAATGGCTTTGTTAAGGAAACTGCTACTTTTATAATTCGGGATGATCTTTGTGTGATGCCTAATGATCTTGGAACAAGTTTACATTTGCTTCAGACACACGGACTAAATGACATAGCGGATGTCGAGAAAAAAACACTAGTTATCAACAAGAAGGAGGCATGTTTTCTCGGTTTCTCTATATATCATCATCTTTTTTGTTGATTTTTTAGATGAATTTATATTATTCTTATATTAAGTATTTATTTGTGCAGGTAGTTGATCTTCTAAAATTGTCGTTGCTCTCAAAAACTCCTCTGACAGACTTTATCTTTAAAAAGGAAAAAATTCTTGGTAATTCTGACCCAACGTTACAGTTTAGGATTGGAAACGGCTTACCATCTGATTCTAATAAGGGTATGAAGAATATGATTGTGAAAGTATTGCTAAGAAAATCAAAAAGAAAAATTTTGTTTGCTACAGCAAATGAAGATTTTGCAGATTTTCTTTTTAGTTTTTTAACATTTCCCATGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCTTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAATGCAGAGAGATGTTTAAGGTCACAGAAACTCAAAGACAAACTAACTAAGCCTCGTATTTTTGCCAATTTTGAACTCAAGAACCAGATACTACCAATTGGAACGTGTCCGTTAACTTGCACGTTTGATAGTGGTGAACCCGCGAAACTTGTTGATCCTAAATCCTCTCTTTCTGGAGGATATGTCAAAGGACCATTAACAATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCCATTGACGCTGTTTCATATCTAGAAAGAATGAAGGTCCCTCTTAATGACGTGGAGGAAATTTTCGTTAGTATTGGTGTAGAGGAGGTAAATGGAGTGTGTGAGATTTTAGTTTTAATATTTCTTGTTTCACACTCGTAACAACTAACAATATTTGATTGCATATATGGTTGCAGGGTCTCAGTATACTAAAAGCTTCATTGACCTCAACATCCGCTTTGACAAACGGCCTCAAGCAGTACATAGGTTAGTACAACATTCAACCAAACAAAACTTTACATTAGTATTTATAAAAGAAACATTCAAATCATTGGTTTTATACACTTCTTGCGTAAAAAAAATTTATCATCAATATTCATTTAGCATGCATATCGCATCCGTCGTAGTACTTATTATTTCTCCACGTCATGAAAGCAGAAAGGAAGTCCTGGTAATCCGAAGTTGGATCAAGAAGTAAGTAAAGTCTAACTAAATATTGTTTCAACCAGGATTCAAATTCGTGTTCTCTCAAAAAAATTGCCATCGAATGAAGCATGGTTATTGTCAAGTTAATAATTTTTAATTGGTACTAATTACACTTCTTTATATTTGCATGTACATGGCAGGAAGTTCAACTGTTCAGGCTAATTTGTCATCCAAAACTGCTTTGATAGATATTCCATTGTACAACCTGAAGAAGCCAAAGGCAGAAGAAGAAGTTTGGGCTACTCTATGTTTTGATAACTGA
Protein sequence

>MS.gene055110.t1

MASGIATESLEQGDEVTLRVLVDNEINKVVYAEAGKDFVDALFSFLTLPLGSISRLVAKESDIEAVKFGSLSTLYQSVSDLDEHYLWSNTCKEMLLNPRNSMEAYCRQLKLNIDDTPLQYFTCKDWQSCRGYMNGSRITTYRNQKCICGRLLNKATAVKTDLTPVGNGFVKETATFIIRDDLCVMPNDLGTSLHLLQTHGLNDIADVEKKTLVINKKEACFLVDLLKLSLLSKTPLTDFIFKKEKILGNSDPTLQFRIGNGLPSDSNKGVLQMLEGFSSLSCIDILYKSMTELNAERCLRSQKLKDKLTKPRIFANFELKNQILPIGTCPLTCTFDSGEPAKLVDPKSSLSGGYVKGPLTIMVTDDLVVTPMSSIDAVSYLERMKVPLNDVEEIFVSIGVEEGLSILKASLTSTSALTNGLKQYIGSSTVQANLSSKTALIDIPLYNLKKPKAEEEVWATLCFDN