AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055024.t1 MTR_7g066570 58.036 336 64 8 1 259 1 336 2.51e-103 312
MS.gene055024.t1 MTR_7g066580 51.361 294 89 2 20 259 1 294 1.73e-91 278
MS.gene055024.t1 MTR_2g029400 51.186 295 84 5 1 259 1 271 2.80e-82 253
MS.gene055024.t1 MTR_7g066310 54.945 273 95 6 11 259 4 272 4.55e-82 252
MS.gene055024.t1 MTR_7g012680 80.916 131 24 1 1 131 1 130 1.70e-69 221
MS.gene055024.t1 MTR_7g012680 76.923 130 30 0 130 259 193 322 6.38e-62 202
MS.gene055024.t1 MTR_1g014060 48.617 253 112 6 23 259 9 259 3.20e-64 206
MS.gene055024.t1 MTR_7g066260 77.600 125 26 2 6 129 7 130 5.15e-59 195
MS.gene055024.t1 MTR_7g066260 55.556 135 54 3 129 259 216 348 1.89e-35 132
MS.gene055024.t1 MTR_7g066290 72.868 129 33 2 2 129 3 130 7.53e-56 186
MS.gene055024.t1 MTR_7g066290 52.817 142 60 4 129 265 216 355 2.25e-28 112
MS.gene055024.t1 MTR_7g058710 66.412 131 30 2 1 131 1 117 3.63e-54 182
MS.gene055024.t1 MTR_7g058710 57.252 131 55 1 129 259 203 332 3.23e-38 140
MS.gene055024.t1 MTR_7g066350 71.212 132 34 2 10 137 5 136 4.25e-54 181
MS.gene055024.t1 MTR_7g066350 61.654 133 47 3 130 259 209 340 2.23e-41 148
MS.gene055024.t1 MTR_7g063920 37.700 313 140 4 1 267 1 304 1.05e-52 177
MS.gene055024.t1 MTR_7g066340 69.600 125 37 1 5 128 3 127 1.90e-51 175
MS.gene055024.t1 MTR_7g066340 52.632 152 71 1 109 260 193 343 2.37e-39 143
MS.gene055024.t1 MTR_7g066360 68.992 129 39 1 1 129 1 128 2.05e-51 175
MS.gene055024.t1 MTR_7g066360 51.562 128 57 3 129 252 212 338 4.84e-23 98.2
MS.gene055024.t1 MTR_7g066680 63.566 129 47 0 131 259 37 165 7.78e-49 165
MS.gene055024.t1 MTR_1g041315 61.240 129 50 0 1 129 1 129 3.22e-48 167
MS.gene055024.t1 MTR_1g041315 64.885 131 43 1 132 259 227 357 4.25e-45 158
MS.gene055024.t1 MTR_7g063880 37.082 329 131 10 1 259 1 323 9.45e-48 165
MS.gene055024.t1 MTR_7g066410 51.678 149 68 1 14 158 10 158 5.98e-46 161
MS.gene055024.t1 MTR_7g066410 39.362 188 101 6 89 265 185 370 3.92e-27 110
MS.gene055024.t1 MTR_7g063900 63.158 114 42 0 15 128 11 124 1.14e-42 152
MS.gene055024.t1 MTR_7g063900 39.231 130 63 2 129 253 207 325 1.32e-18 85.5
MS.gene055024.t1 MTR_7g066430 56.410 117 51 0 15 131 5 121 1.79e-41 149
MS.gene055024.t1 MTR_7g058700 50.000 156 55 3 26 172 531 672 1.93e-40 149
MS.gene055024.t1 MTR_7g058700 56.250 128 35 2 132 259 725 831 3.06e-35 134
MS.gene055024.t1 MTR_7g063890 55.224 134 52 2 2 129 11 142 6.10e-40 145
MS.gene055024.t1 MTR_7g063890 39.007 141 77 3 129 266 223 357 2.46e-17 81.6
MS.gene055024.t1 MTR_7g063660 60.000 115 46 0 13 127 8 122 4.44e-39 142
MS.gene055024.t1 MTR_7g063660 36.567 134 80 1 129 262 204 332 3.97e-18 84.0
MS.gene055024.t1 MTR_4g017470 32.886 298 140 6 1 241 1 295 9.49e-39 141
MS.gene055024.t1 MTR_7g063820 57.724 123 51 1 6 128 2 123 8.57e-38 139
MS.gene055024.t1 MTR_7g063820 40.458 131 72 1 129 259 209 333 5.64e-21 92.4
MS.gene055024.t1 MTR_7g063840 58.730 126 48 2 1 126 1 122 2.56e-37 137
MS.gene055024.t1 MTR_7g063840 37.121 132 76 3 129 260 205 329 8.48e-18 83.2
MS.gene055024.t1 MTR_7g062280 56.522 115 50 0 13 127 9 123 3.07e-37 137
MS.gene055024.t1 MTR_7g062280 35.606 132 79 1 129 260 221 346 3.16e-19 87.4
MS.gene055024.t1 MTR_7g062280 37.069 116 65 3 9 121 259 369 1.30e-11 64.7
MS.gene055024.t1 MTR_7g062300 53.175 126 57 1 1 126 1 124 1.16e-36 135
MS.gene055024.t1 MTR_7g062300 36.364 132 78 1 129 260 211 336 1.21e-19 88.2
MS.gene055024.t1 MTR_7g062300 41.304 92 46 3 9 97 249 335 9.80e-12 65.1
MS.gene055024.t1 MTR_3g065200 35.117 299 118 7 15 260 4 279 1.72e-36 135
MS.gene055024.t1 MTR_7g063830 54.032 124 56 1 6 128 2 125 1.78e-36 134
MS.gene055024.t1 MTR_7g063830 40.602 133 71 2 129 259 207 333 6.36e-21 92.0
MS.gene055024.t1 MTR_7g066400 52.308 130 60 1 132 259 190 319 2.25e-36 134
MS.gene055024.t1 MTR_7g066400 58.559 111 30 1 15 125 13 107 4.36e-33 125
MS.gene055024.t1 MTR_7g062270 51.969 127 57 1 1 127 1 123 2.28e-35 130
MS.gene055024.t1 MTR_7g066480 57.265 117 49 1 13 128 15 131 3.58e-35 131
MS.gene055024.t1 MTR_7g066480 39.161 143 77 2 118 250 191 333 1.50e-22 96.3
MS.gene055024.t1 MTR_7g066490 56.140 114 50 0 15 128 17 130 1.43e-34 129
MS.gene055024.t1 MTR_7g066490 41.860 129 64 2 129 251 197 320 3.34e-19 86.7
MS.gene055024.t1 MTR_3g007740 53.659 123 40 2 1 123 1 106 2.31e-28 112
MS.gene055024.t1 MTR_3g007740 43.750 128 72 0 129 256 193 320 4.55e-25 103
MS.gene055024.t1 MTR_7g066280 34.632 231 87 6 93 260 1 230 2.34e-27 109
MS.gene055024.t1 MTR_4g019310 50.435 115 49 2 17 123 11 125 9.17e-27 108
MS.gene055024.t1 MTR_4g019310 35.484 124 71 2 130 251 221 337 3.40e-16 78.2
MS.gene055024.t1 MTR_7g063670 47.244 127 53 2 1 127 4 116 2.11e-26 107
MS.gene055024.t1 MTR_7g063670 41.085 129 70 2 129 256 205 328 1.40e-21 94.0
MS.gene055024.t1 MTR_4g017610 45.455 132 63 4 5 127 4 135 2.32e-25 104
MS.gene055024.t1 MTR_4g017610 36.025 161 93 6 108 267 201 352 5.95e-15 74.7
MS.gene055024.t1 MTR_4g017410 45.038 131 61 4 8 127 3 133 1.16e-24 102
MS.gene055024.t1 MTR_4g017410 37.838 111 65 3 129 237 222 330 1.07e-14 73.9
MS.gene055024.t1 MTR_4g017440 42.000 150 65 5 1 128 1 150 1.53e-23 99.8
MS.gene055024.t1 MTR_4g017440 40.171 117 67 3 122 237 217 331 1.12e-16 79.7
MS.gene055024.t1 MTR_7g100420 35.271 258 126 8 8 259 33 255 3.27e-22 95.1
MS.gene055024.t1 MTR_4g019340 44.262 122 56 2 15 124 39 160 8.85e-22 94.7
MS.gene055024.t1 MTR_4g019340 38.053 113 69 1 129 241 253 364 9.02e-15 74.3
MS.gene055024.t1 MTR_4g017830 40.288 139 67 4 6 128 4 142 1.96e-20 90.9
MS.gene055024.t1 MTR_4g017830 33.577 137 84 2 129 259 217 352 1.23e-16 79.7
MS.gene055024.t1 MTR_2g067310 55.556 81 31 1 25 105 58 133 7.98e-20 86.3
MS.gene055024.t1 MTR_8g023240 26.351 296 149 9 15 241 38 333 3.56e-19 87.4
MS.gene055024.t1 MTR_4g017550 35.115 131 83 2 129 257 194 324 8.52e-18 83.2
MS.gene055024.t1 MTR_4g019240 37.671 146 76 5 10 147 9 147 1.08e-16 76.3
MS.gene055024.t1 MTR_1g115450 40.476 84 45 1 15 98 8 86 1.20e-14 69.7
MS.gene055024.t1 MTR_7g063720 38.636 88 54 0 172 259 15 102 7.88e-14 69.7
MS.gene055024.t1 MTR_7g063720 28.571 175 99 6 17 173 26 192 1.55e-12 65.9
MS.gene055024.t1 MTR_8g445860 34.211 114 67 2 15 125 14 122 4.67e-13 67.4
MS.gene055024.t1 MTR_0150s0010 38.710 93 52 1 6 98 2 89 5.74e-13 67.0
MS.gene055024.t1 MTR_1g115455 33.600 125 72 3 15 134 10 128 7.74e-13 66.6
MS.gene055024.t1 MTR_1g115440 40.206 97 50 2 1 97 1 89 4.28e-12 64.7
MS.gene055024.t1 MTR_7g063690 59.677 62 23 1 1 62 1 60 6.67e-12 64.3
MS.gene055024.t1 MTR_1g115470 38.298 94 51 2 17 108 9 97 1.58e-11 64.3
MS.gene055024.t1 MTR_7g063870 54.545 55 25 0 8 62 25 79 4.02e-11 62.0
MS.gene055024.t1 MTR_8g445920 35.165 91 54 1 6 96 2 87 9.01e-11 58.2
MS.gene055024.t1 MTR_8g044890 35.165 91 54 1 6 96 2 87 9.01e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055024.t1 AT3G09110 40.000 160 92 1 17 172 12 171 1.44e-29 114
MS.gene055024.t1 AT5G43240 43.333 120 68 0 15 134 10 129 7.62e-28 112
MS.gene055024.t1 AT5G43240 33.146 178 91 6 108 270 190 354 2.76e-11 63.9
MS.gene055024.t1 AT5G43240 43.333 120 68 0 15 134 10 129 7.62e-28 112
MS.gene055024.t1 AT5G43240 33.146 178 91 6 108 270 190 354 2.76e-11 63.9
MS.gene055024.t1 AT5G43240 43.333 120 68 0 15 134 10 129 7.62e-28 112
MS.gene055024.t1 AT5G43240 33.146 178 91 6 108 270 190 354 2.76e-11 63.9
MS.gene055024.t1 AT3G09120 46.847 111 58 1 13 123 5 114 4.36e-26 104
MS.gene055024.t1 AT5G01120 44.037 109 61 0 15 123 10 118 2.44e-25 105
MS.gene055024.t1 AT5G01120 34.532 139 87 2 130 266 215 351 7.90e-12 65.5
MS.gene055024.t1 AT3G09140 46.552 116 60 1 17 130 12 127 4.51e-25 103
MS.gene055024.t1 AT3G09140 37.168 113 63 2 131 238 227 336 9.87e-12 65.1
MS.gene055024.t1 AT3G09140 46.552 116 60 1 17 130 12 127 5.19e-25 103
MS.gene055024.t1 AT3G09140 37.069 116 65 2 128 238 252 364 2.97e-13 69.7
MS.gene055024.t1 AT5G01150 45.455 110 60 0 17 126 12 121 5.96e-24 100
MS.gene055024.t1 AT5G01130 44.068 118 64 2 6 123 2 117 2.64e-20 90.1
MS.gene055024.t1 AT5G01130 34.821 112 72 1 131 242 204 314 5.69e-11 62.8
MS.gene055024.t1 AT5G37320 42.574 101 57 1 24 123 19 119 8.63e-20 89.0
MS.gene055024.t1 AT5G01140 32.857 140 83 3 130 266 191 322 9.19e-15 74.3
MS.gene055024.t1 AT5G01140 32.500 160 87 3 17 172 12 154 4.38e-14 72.0
MS.gene055024.t1 AT5G43240 33.146 178 91 6 108 270 46 210 3.34e-11 63.2

Find 49 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTAACATTGCCTTTA+GGG 0.201640 7.4:+37416712 MS.gene055024:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.310196 7.4:+37416711 MS.gene055024:CDS
TAATCTTCCATGGAGTTTCT+TGG 0.323499 7.4:-37416873 None:intergenic
AACAATATTGAGTTTCTGAT+TGG 0.324199 7.4:+37417427 MS.gene055024:CDS
AGTACTTCGTGTGCGAGAAT+TGG 0.338229 7.4:+37416940 MS.gene055024:CDS
TTCAACTGATTCACTTTGAA+TGG 0.341437 7.4:-37416592 None:intergenic
AATATTGAAGCAGTGAGATT+TGG 0.357605 7.4:+37416765 MS.gene055024:CDS
CCATCAGCTTCTGAAGCTTA+TGG 0.366955 7.4:-37418437 None:intergenic
AAGCTTATGGCCTGCTGGTA+TGG 0.387629 7.4:-37418424 None:intergenic
GCTCTTTCGTAAAATAAAAT+CGG 0.406696 7.4:-37417377 None:intergenic
TAATGTTCGTCTGAGAGTTT+TGG 0.408151 7.4:+37416623 MS.gene055024:CDS
GTAAAATAAAATCGGTCAAA+GGG 0.412435 7.4:-37417369 None:intergenic
GTACTTCGTGTGCGAGAATT+GGG 0.414321 7.4:+37416941 MS.gene055024:CDS
CAAATTCTGTTTGTCGAAGC+AGG 0.430694 7.4:+37417514 MS.gene055024:CDS
GATTCAAATTATCAACAGAT+TGG 0.441439 7.4:-37417399 None:intergenic
TTCTGAAGCTTATGGCCTGC+TGG 0.464432 7.4:-37418429 None:intergenic
CATATGCAACACTCCTCCTA+AGG 0.479612 7.4:-37417578 None:intergenic
GGAGTGTTGCATATGCTTCA+AGG 0.493604 7.4:+37417586 MS.gene055024:CDS
TCCGACATTAAATATATGTC+CGG 0.499242 7.4:-37417664 None:intergenic
CGTAAAATAAAATCGGTCAA+AGG 0.508363 7.4:-37417370 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.508934 7.4:+37416663 MS.gene055024:CDS
TTTCTAACCTTCCCCTTAGG+AGG 0.508980 7.4:+37417565 MS.gene055024:CDS
CACTGCTTGCTCATTTCAAG+CGG 0.524940 7.4:-37418463 None:intergenic
CTATATTTAGTTTCAGCTGT+CGG 0.539959 7.4:-37416899 None:intergenic
CTGTCGGCAGTAATCTTCCA+TGG 0.545539 7.4:-37416883 None:intergenic
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.4:-37417577 None:intergenic
GAATTGGGATTGTAGAAGAA+AGG 0.552800 7.4:+37416956 MS.gene055024:CDS
CCATAAGCTTCAGAAGCTGA+TGG 0.558328 7.4:+37418437 MS.gene055024:CDS
GTTCCTGCAGCCATACCAGC+AGG 0.571224 7.4:+37418414 MS.gene055024:intron
TATTGCTAGACTCGGTGCTA+AGG 0.575129 7.4:+37416737 MS.gene055024:CDS
AGTCTAGCAATAGTCCCTAA+AGG 0.578435 7.4:-37416726 None:intergenic
GACATATATTTAATGTCGGA+GGG 0.581581 7.4:+37417667 MS.gene055024:CDS
TGTGTATGCTGAGGCTGGGA+AGG 0.585583 7.4:+37416668 MS.gene055024:CDS
GTCTATCCTCATCGGATGGT+AGG 0.588081 7.4:-37417453 None:intergenic
CAACACTCCTCCTAAGGGGA+AGG 0.595804 7.4:-37417572 None:intergenic
CTCGCACACGAAGTACTGCA+AGG 0.596798 7.4:-37416934 None:intergenic
GGACATATATTTAATGTCGG+AGG 0.598082 7.4:+37417666 MS.gene055024:CDS
AGACATTTGTCTATCCTCAT+CGG 0.604641 7.4:-37417461 None:intergenic
ACTGCAACCAAGAAACTCCA+TGG 0.607950 7.4:+37416866 MS.gene055024:CDS
TTTGTGCTCACGTACATGCA+AGG 0.610161 7.4:+37416836 MS.gene055024:CDS
TCCGGACATATATTTAATGT+CGG 0.613233 7.4:+37417663 MS.gene055024:CDS
TTAGGGACTATTGCTAGACT+CGG 0.631704 7.4:+37416729 MS.gene055024:CDS
TAAAATAAAATCGGTCAAAG+GGG 0.636441 7.4:-37417368 None:intergenic
AAGTTGTGTATGCTGAGGCT+GGG 0.646725 7.4:+37416664 MS.gene055024:CDS
ATTTGTCTATCCTCATCGGA+TGG 0.646872 7.4:-37417457 None:intergenic
TCGCACACGAAGTACTGCAA+GGG 0.658925 7.4:-37416933 None:intergenic
TGGAGACCTACCATCCGATG+AGG 0.685276 7.4:+37417447 MS.gene055024:CDS
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.4:-37417576 None:intergenic
GAACAAAGTTGTGTATGCTG+AGG 0.744300 7.4:+37416659 MS.gene055024:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTCTTATTTTTGTAT+AGG + chr7.4:37417309-37417328 MS.gene055024:intron 10.0%
!! TTTCTATATTGAAAAACTTT+GGG - chr7.4:37417056-37417075 None:intergenic 15.0%
!!! AAGTTTTTCAATATAGAAAA+TGG + chr7.4:37417057-37417076 MS.gene055024:intron 15.0%
!!! AATATAAGTATTGTTTTAAC+TGG + chr7.4:37418143-37418162 MS.gene055024:intron 15.0%
!!! ATACAATACTATTTTGAAAA+CGG + chr7.4:37418230-37418249 MS.gene055024:intron 15.0%
!!! TTTTCTATATTGAAAAACTT+TGG - chr7.4:37417057-37417076 None:intergenic 15.0%
!! TAAGATTCTCAATACAAATT+TGG + chr7.4:37418194-37418213 MS.gene055024:intron 20.0%
!!! AAATAATTTGTCAAACCAAT+TGG + chr7.4:37418067-37418086 MS.gene055024:intron 20.0%
!!! AATAATTTGTCAAACCAATT+GGG + chr7.4:37418068-37418087 MS.gene055024:intron 20.0%
!!! TACAATACTATTTTGAAAAC+GGG + chr7.4:37418231-37418250 MS.gene055024:intron 20.0%
! AAAGTATGTACCATTTAAAG+TGG + chr7.4:37417876-37417895 MS.gene055024:intron 25.0%
! AACAATATTGAGTTTCTGAT+TGG + chr7.4:37417427-37417446 MS.gene055024:CDS 25.0%
! ATATTCCACATTACTAACAA+AGG - chr7.4:37418128-37418147 None:intergenic 25.0%
! GATTCAAATTATCAACAGAT+TGG - chr7.4:37417402-37417421 None:intergenic 25.0%
! GCTCTTTCGTAAAATAAAAT+CGG - chr7.4:37417380-37417399 None:intergenic 25.0%
! GTAAAATAAAATCGGTCAAA+GGG - chr7.4:37417372-37417391 None:intergenic 25.0%
! TAAAATAAAATCGGTCAAAG+GGG - chr7.4:37417371-37417390 None:intergenic 25.0%
! TAAGTATGACAATAATTCAC+AGG - chr7.4:37417778-37417797 None:intergenic 25.0%
! TTAAATCTACTTCAAAAGCT+TGG + chr7.4:37417153-37417172 MS.gene055024:intron 25.0%
!! AATACACCATTTCTTTTGTA+AGG - chr7.4:37417831-37417850 None:intergenic 25.0%
!!! TATAGAAAATGGTTTTGTGA+AGG + chr7.4:37417068-37417087 MS.gene055024:intron 25.0%
AAGAACCAGATATTACCAAT+TGG + chr7.4:37417739-37417758 MS.gene055024:intron 30.0%
AATATTGAAGCAGTGAGATT+TGG + chr7.4:37416765-37416784 MS.gene055024:CDS 30.0%
ACTATGATTACACAAGAATG+AGG + chr7.4:37417797-37417816 MS.gene055024:intron 30.0%
AGATGTTATCATAACGAGTT+TGG - chr7.4:37418329-37418348 None:intergenic 30.0%
AGTGGCTCATAATCTAAAAA+AGG - chr7.4:37418260-37418279 None:intergenic 30.0%
CGTAAAATAAAATCGGTCAA+AGG - chr7.4:37417373-37417392 None:intergenic 30.0%
GAACCAAAAAATGCTATTGT+GGG + chr7.4:37417007-37417026 MS.gene055024:intron 30.0%
GACATATATTTAATGTCGGA+GGG + chr7.4:37417667-37417686 MS.gene055024:CDS 30.0%
TAGAAGTGACATAGTAGAAA+TGG - chr7.4:37417995-37418014 None:intergenic 30.0%
TATGACCTTTGTTAGTAATG+TGG + chr7.4:37418120-37418139 MS.gene055024:intron 30.0%
TCCGACATTAAATATATGTC+CGG - chr7.4:37417667-37417686 None:intergenic 30.0%
TCCGGACATATATTTAATGT+CGG + chr7.4:37417663-37417682 MS.gene055024:CDS 30.0%
TGGCGTTATATTTAAGAAGT+GGG - chr7.4:37418309-37418328 None:intergenic 30.0%
TTGGCGTTATATTTAAGAAG+TGG - chr7.4:37418310-37418329 None:intergenic 30.0%
! AAACTTGCTCCAAAAACATT+AGG - chr7.4:37417135-37417154 None:intergenic 30.0%
! CTATATTTAGTTTCAGCTGT+CGG - chr7.4:37416902-37416921 None:intergenic 30.0%
! GATTTTGCATTAGAAGACTT+GGG - chr7.4:37417907-37417926 None:intergenic 30.0%
! TGATTTTGCATTAGAAGACT+TGG - chr7.4:37417908-37417927 None:intergenic 30.0%
! TGTGTTATGCCTAATGTTTT+TGG + chr7.4:37417123-37417142 MS.gene055024:intron 30.0%
! TTCAACTGATTCACTTTGAA+TGG - chr7.4:37416595-37416614 None:intergenic 30.0%
! TTTTCATCTTTAAGCAGCAT+TGG + chr7.4:37417610-37417629 MS.gene055024:CDS 30.0%
!!! TTTCCCACAATAGCATTTTT+TGG - chr7.4:37417013-37417032 None:intergenic 30.0%
AAAAGTCCCTCTATCTGATT+TGG + chr7.4:37418023-37418042 MS.gene055024:intron 35.0%
AGACATTTGTCTATCCTCAT+CGG - chr7.4:37417464-37417483 None:intergenic 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.4:37416711-37416730 MS.gene055024:CDS 35.0%
ATAGTAGAAATGGACGACAT+TGG - chr7.4:37417985-37418004 None:intergenic 35.0%
CAAAGGACCATCAATGTATA+TGG + chr7.4:37417936-37417955 MS.gene055024:intron 35.0%
GAATTGGGATTGTAGAAGAA+AGG + chr7.4:37416956-37416975 MS.gene055024:CDS 35.0%
GATTGTAGAAGAAAGGTAAG+TGG + chr7.4:37416963-37416982 MS.gene055024:intron 35.0%
GCAAAATCATCATATGCCAA+AGG + chr7.4:37417919-37417938 MS.gene055024:intron 35.0%
GCTTCTTAACATTGCCTTTA+GGG + chr7.4:37416712-37416731 MS.gene055024:CDS 35.0%
GGAACCAAAAAATGCTATTG+TGG + chr7.4:37417006-37417025 MS.gene055024:intron 35.0%
GGACATATATTTAATGTCGG+AGG + chr7.4:37417666-37417685 MS.gene055024:CDS 35.0%
GGTTCCTAAAAAAGCTCAAA+AGG - chr7.4:37416992-37417011 None:intergenic 35.0%
GGTTCTTGAGTTCAAATTGT+GGG - chr7.4:37417726-37417745 None:intergenic 35.0%
GTTCTTGAGTTCAAATTGTG+GGG - chr7.4:37417725-37417744 None:intergenic 35.0%
TAATCTTCCATGGAGTTTCT+TGG - chr7.4:37416876-37416895 None:intergenic 35.0%
TACCGACCTTACAAAAGAAA+TGG + chr7.4:37417822-37417841 MS.gene055024:intron 35.0%
TCTGTCACCATATACATTGA+TGG - chr7.4:37417946-37417965 None:intergenic 35.0%
TGGTTCTTGAGTTCAAATTG+TGG - chr7.4:37417727-37417746 None:intergenic 35.0%
TGTTGACATCAACAAGAAAG+AGG + chr7.4:37417213-37417232 MS.gene055024:intron 35.0%
TTGGGATCAACCACTTTAAA+TGG - chr7.4:37417889-37417908 None:intergenic 35.0%
TTTCCTCCAAATCAGATAGA+GGG - chr7.4:37418032-37418051 None:intergenic 35.0%
! CACCATTTCTTTTGTAAGGT+CGG - chr7.4:37417827-37417846 None:intergenic 35.0%
! CATATACATTGATGGTCCTT+TGG - chr7.4:37417938-37417957 None:intergenic 35.0%
! TAATGTTCGTCTGAGAGTTT+TGG + chr7.4:37416623-37416642 MS.gene055024:CDS 35.0%
!! GATGCCTTTTGAGCTTTTTT+AGG + chr7.4:37416985-37417004 MS.gene055024:intron 35.0%
!!! AGAAAGAGGCATGCTTTTTT+CGG + chr7.4:37417227-37417246 MS.gene055024:intron 35.0%
AGTCTAGCAATAGTCCCTAA+AGG - chr7.4:37416729-37416748 None:intergenic 40.0%
ATATGCAACACTCCTCCTAA+GGG - chr7.4:37417580-37417599 None:intergenic 40.0%
ATCGTACAACAGTACCCAAT+TGG - chr7.4:37418085-37418104 None:intergenic 40.0%
ATTTGTCTATCCTCATCGGA+TGG - chr7.4:37417460-37417479 None:intergenic 40.0%
CAAATTCTGTTTGTCGAAGC+AGG + chr7.4:37417514-37417533 MS.gene055024:CDS 40.0%
CGAGACTATTGATGCTATTG+AGG + chr7.4:37417179-37417198 MS.gene055024:intron 40.0%
CTTTCCTCCAAATCAGATAG+AGG - chr7.4:37418033-37418052 None:intergenic 40.0%
GAACAAAGTTGTGTATGCTG+AGG + chr7.4:37416659-37416678 MS.gene055024:CDS 40.0%
GAAGTGGGAGTTGTATTAAG+AGG - chr7.4:37418294-37418313 None:intergenic 40.0%
TTAGGGACTATTGCTAGACT+CGG + chr7.4:37416729-37416748 MS.gene055024:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+AGG + chr7.4:37417562-37417581 MS.gene055024:CDS 40.0%
!! GAGCTTTTCTGATTTGAGTC+CGG + chr7.4:37417645-37417664 MS.gene055024:CDS 40.0%
AAAGTTGTGTATGCTGAGGC+TGG + chr7.4:37416663-37416682 MS.gene055024:CDS 45.0%
AAGTTGTGTATGCTGAGGCT+GGG + chr7.4:37416664-37416683 MS.gene055024:CDS 45.0%
ACTGCAACCAAGAAACTCCA+TGG + chr7.4:37416866-37416885 MS.gene055024:CDS 45.0%
AGTACTTCGTGTGCGAGAAT+TGG + chr7.4:37416940-37416959 MS.gene055024:CDS 45.0%
CATATGCAACACTCCTCCTA+AGG - chr7.4:37417581-37417600 None:intergenic 45.0%
CCATAAGCTTCAGAAGCTGA+TGG + chr7.4:37418437-37418456 MS.gene055024:CDS 45.0%
GTACTTCGTGTGCGAGAATT+GGG + chr7.4:37416941-37416960 MS.gene055024:CDS 45.0%
TAAGAGGCAAGTCAATCGAG+TGG - chr7.4:37418278-37418297 None:intergenic 45.0%
TATGCAACACTCCTCCTAAG+GGG - chr7.4:37417579-37417598 None:intergenic 45.0%
TCAAATTGTGGGGCAATGAG+AGG - chr7.4:37417715-37417734 None:intergenic 45.0%
TTTCTAACCTTCCCCTTAGG+AGG + chr7.4:37417565-37417584 MS.gene055024:CDS 45.0%
TTTGTGCTCACGTACATGCA+AGG + chr7.4:37416836-37416855 MS.gene055024:CDS 45.0%
! CAGCGCCAATTGGTAATATC+TGG - chr7.4:37417747-37417766 None:intergenic 45.0%
!! AGTCCCTCTATCTGATTTGG+AGG + chr7.4:37418026-37418045 MS.gene055024:intron 45.0%
!! CCATCAGCTTCTGAAGCTTA+TGG - chr7.4:37418440-37418459 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.4:37417586-37417605 MS.gene055024:CDS 45.0%
!! TATTGCTAGACTCGGTGCTA+AGG + chr7.4:37416737-37416756 MS.gene055024:CDS 45.0%
!! TGTTCGTCTGAGAGTTTTGG+TGG + chr7.4:37416626-37416645 MS.gene055024:CDS 45.0%
AAGCTTATGGCCTGCTGGTA+TGG - chr7.4:37418427-37418446 None:intergenic 50.0%
ACTAGACTGCTTGCAAGCAG+TGG - chr7.4:37418369-37418388 None:intergenic 50.0%
CTGTCGGCAGTAATCTTCCA+TGG - chr7.4:37416886-37416905 None:intergenic 50.0%
GGTAAGAAAGCAGCGCCAAT+TGG - chr7.4:37417757-37417776 None:intergenic 50.0%
GTCTATCCTCATCGGATGGT+AGG - chr7.4:37417456-37417475 None:intergenic 50.0%
!! TCGCACACGAAGTACTGCAA+GGG - chr7.4:37416936-37416955 None:intergenic 50.0%
!! TTCTGAAGCTTATGGCCTGC+TGG - chr7.4:37418432-37418451 None:intergenic 50.0%
AGACTGCTTGCAAGCAGTGG+AGG - chr7.4:37418366-37418385 None:intergenic 55.0%
CAACACTCCTCCTAAGGGGA+AGG - chr7.4:37417575-37417594 None:intergenic 55.0%
TGGAGACCTACCATCCGATG+AGG + chr7.4:37417447-37417466 MS.gene055024:CDS 55.0%
TGTGTATGCTGAGGCTGGGA+AGG + chr7.4:37416668-37416687 MS.gene055024:CDS 55.0%
!! CTCGCACACGAAGTACTGCA+AGG - chr7.4:37416937-37416956 None:intergenic 55.0%
GTTCCTGCAGCCATACCAGC+AGG + chr7.4:37418414-37418433 MS.gene055024:intron 60.0%
TGGCCTGCTGGTATGGCTGC+AGG - chr7.4:37418420-37418439 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 37416585 37418470 37416585 ID=MS.gene055024
chr7.4 mRNA 37416585 37418470 37416585 ID=MS.gene055024.t1;Parent=MS.gene055024
chr7.4 exon 37416585 37416977 37416585 ID=MS.gene055024.t1.exon1;Parent=MS.gene055024.t1
chr7.4 CDS 37416585 37416977 37416585 ID=cds.MS.gene055024.t1;Parent=MS.gene055024.t1
chr7.4 exon 37417331 37417706 37417331 ID=MS.gene055024.t1.exon2;Parent=MS.gene055024.t1
chr7.4 CDS 37417331 37417706 37417331 ID=cds.MS.gene055024.t1;Parent=MS.gene055024.t1
chr7.4 exon 37418424 37418470 37418424 ID=MS.gene055024.t1.exon3;Parent=MS.gene055024.t1
chr7.4 CDS 37418424 37418470 37418424 ID=cds.MS.gene055024.t1;Parent=MS.gene055024.t1
Gene Sequence

>MS.gene055024

ATGGCTTCCATTCAAAGTGAATCAGTTGAACAAGTTGATAATGTTCGTCTGAGAGTTTTGGTGGACAAAGAAAAGAACAAAGTTGTGTATGCTGAGGCTGGGAAGGTTTTCGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGGACTATTGCTAGACTCGGTGCTAAGGACTCAAATATTGAAGCAGTGAGATTTGGCAGCATTAGCTCATTGTATCAAAGTGTGTTAAATCTTGATCAACAATATTTGTGCTCACGTACATGCAAGGAAATGCTACTGCAACCAAGAAACTCCATGGAAGATTACTGCCGACAGCTGAAACTAAATATAGACGACACAGAACCCTTGCAGTACTTCGTGTGCGAGAATTGGGATTGTAGAAGAAAGGTAAGTGGATGCCTTTTGAGCTTTTTTAGGAACCAAAAAATGCTATTGTGGGAAAGTAATGAACAGAGAAGTATTCCCAAAGTTTTTCAATATAGAAAATGGTTTTGTGAAGGAAAATGCTACTTTTATCATTTGTGATGATCTTTGTGTTATGCCTAATGTTTTTGGAGCAAGTTTAAATCTACTTCAAAAGCTTGGAGTCGAGACTATTGATGCTATTGAGGAACAAACAAGCTGTTGACATCAACAAGAAAGAGGCATGCTTTTTTCGGCTTCTATATCATCTACATTATACATATCATCTTTGAATATTGACTATTTTTTCTAATTGATTATTTCTTATTTTTGTATAGGTAGTTGATCTTCTCAAGTTATCATTAATCTCAAAGACCCCTTTGACCGATTTTATTTTACGAAAGAGCCAATCTGTTGATAATTTGAATCTAAGAAACAATATTGAGTTTCTGATTGGAGACCTACCATCCGATGAGGATAGACAAATGTCTGTGAAAGTGACATTAAGAAAAACAAATGAACAAATTCTGTTTGTCGAAGCAGGAGATGATTTTATTGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTAGGAGGAGTGTTGCATATGCTTCAAGGATTTTCATCTTTAAGCAGCATTGGTAACTTGTACAAGAGCTTTTCTGATTTGAGTCCGGACATATATTTAATGTCGGAGGGACTCAAAGACAAACTATGTAAGCCTCTCATTGCCCCACAATTTGAACTCAAGAACCAGATATTACCAATTGGCGCTGCTTTCTTACCTGTGAATTATTGTCATACTTACTATGATTACACAAGAATGAGGTATACCGACCTTACAAAAGAAATGGTGTATTCTAACTATAATAGAATTCATGAAGAAAAGTATGTACCATTTAAAGTGGTTGATCCCAAGTCTTCTAATGCAAAATCATCATATGCCAAAGGACCATCAATGTATATGGTGACAGACGACTTGTGTGTGAGTCCAATGTCGTCCATTTCTACTATGTCACTTCTAAAAAGATCAAAAGTCCCTCTATCTGATTTGGAGGAAAGAGTTATCAAAATTGAAATAATTTGTCAAACCAATTGGGTACTGTTGTACGATAAAAATTGAAATGTCTATGACCTTTGTTAGTAATGTGGAATATAAGTATTGTTTTAACTGGAGAAAAACTTATAGCATTTCATTCAATATAAGATTCTCAATACAAATTTGGATGTAATCATAACATACAATACTATTTTGAAAACGGGATGCCTTTTTTAGATTATGAGCCACTCGATTGACTTGCCTCTTAATACAACTCCCACTTCTTAAATATAACGCCAAACTCGTTATGATAACATCTTGTTTTGTTGACAGCCTCCACTGCTTGCAAGCAGTCTAGTTCAATGACAACATTGTTAAAATCTTGTTCCTGCAGCCATACCAGCAGGCCATAAGCTTCAGAAGCTGATGGATTCCGCTTGA
Protein sequence

>MS.gene055024.t1

MASIQSESVEQVDNVRLRVLVDKEKNKVVYAEAGKVFVDALFSFLTLPLGTIARLGAKDSNIEAVRFGSISSLYQSVLNLDQQYLCSRTCKEMLLQPRNSMEDYCRQLKLNIDDTEPLQYFVCENWDCRRKVVDLLKLSLISKTPLTDFILRKSQSVDNLNLRNNIEFLIGDLPSDEDRQMSVKVTLRKTNEQILFVEAGDDFIDFVFSFLTFPLGGVLHMLQGFSSLSSIGNLYKSFSDLSPDIYLMSEGLKDKLSIPAGHKLQKLMDSA