AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84633

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84633.t1 MTR_7g066570 77.643 577 33 5 1 488 1 570 0.0 848
MS.gene84633.t1 MTR_7g012680 61.789 492 92 5 1 438 1 450 0.0 553
MS.gene84633.t1 MTR_7g066260 51.052 523 159 9 6 467 7 493 7.59e-153 444
MS.gene84633.t1 MTR_7g058710 50.920 489 180 9 1 437 1 481 6.09e-152 442
MS.gene84633.t1 MTR_7g066340 49.503 503 159 9 5 449 3 468 1.95e-141 415
MS.gene84633.t1 MTR_7g066350 52.361 487 134 11 10 434 5 455 3.14e-140 411
MS.gene84633.t1 MTR_1g041315 49.691 485 142 8 1 417 1 451 5.41e-139 409
MS.gene84633.t1 MTR_7g066580 52.402 458 161 11 20 435 1 443 5.21e-136 400
MS.gene84633.t1 MTR_7g066400 48.565 453 175 10 10 430 8 434 7.30e-129 382
MS.gene84633.t1 MTR_7g066360 46.139 505 172 10 1 447 1 463 2.50e-119 358
MS.gene84633.t1 MTR_7g066290 47.251 491 140 11 2 433 3 433 1.21e-118 355
MS.gene84633.t1 MTR_2g029400 46.813 455 160 9 1 423 1 405 7.92e-115 344
MS.gene84633.t1 MTR_7g058700 44.255 470 129 9 26 437 531 925 1.24e-110 349
MS.gene84633.t1 MTR_7g066430 40.873 504 203 12 15 440 5 491 2.61e-108 331
MS.gene84633.t1 MTR_7g066310 43.067 476 168 9 11 456 4 406 2.63e-104 317
MS.gene84633.t1 MTR_7g066410 38.160 511 217 13 14 433 10 512 5.33e-97 302
MS.gene84633.t1 MTR_7g063880 40.081 494 211 14 1 437 1 466 1.18e-95 297
MS.gene84633.t1 MTR_7g062280 36.673 499 236 10 6 437 4 489 2.15e-95 297
MS.gene84633.t1 MTR_7g062300 36.939 490 225 10 6 432 4 472 6.01e-95 295
MS.gene84633.t1 MTR_7g063920 38.972 467 222 10 1 437 1 434 2.29e-94 293
MS.gene84633.t1 MTR_7g063900 40.650 492 207 15 15 437 11 486 3.39e-93 291
MS.gene84633.t1 MTR_7g063820 39.511 491 224 11 8 437 4 482 1.10e-92 290
MS.gene84633.t1 MTR_7g063660 37.681 483 228 11 13 437 8 475 3.84e-91 286
MS.gene84633.t1 MTR_7g063890 40.763 498 217 13 5 437 18 502 9.20e-89 281
MS.gene84633.t1 MTR_3g007740 38.478 473 220 9 1 433 1 442 2.30e-88 278
MS.gene84633.t1 MTR_7g063840 36.722 482 239 11 7 437 5 471 5.67e-88 278
MS.gene84633.t1 MTR_7g066680 50.987 304 108 3 162 430 38 335 4.25e-87 271
MS.gene84633.t1 MTR_7g066280 40.961 437 188 10 66 456 1 413 4.64e-85 268
MS.gene84633.t1 MTR_7g063670 36.345 487 225 13 1 437 4 455 8.37e-83 264
MS.gene84633.t1 MTR_7g063830 35.759 481 208 11 8 433 4 438 1.59e-77 249
MS.gene84633.t1 MTR_3g065200 35.054 465 187 11 12 419 1 407 6.24e-74 241
MS.gene84633.t1 MTR_4g019310 33.671 493 230 11 17 429 11 486 5.30e-72 237
MS.gene84633.t1 MTR_4g017830 33.595 509 244 13 6 432 4 500 8.09e-70 232
MS.gene84633.t1 MTR_4g017440 33.333 513 261 14 1 438 1 507 1.14e-68 228
MS.gene84633.t1 MTR_7g066480 41.325 317 135 5 15 280 17 333 2.17e-65 217
MS.gene84633.t1 MTR_7g066480 54.878 82 37 0 354 435 342 423 2.19e-18 87.8
MS.gene84633.t1 MTR_4g017610 33.742 489 245 14 5 430 4 476 7.49e-65 217
MS.gene84633.t1 MTR_4g017470 33.463 514 256 15 1 453 1 489 2.31e-63 214
MS.gene84633.t1 MTR_4g019340 34.304 481 224 11 15 421 39 501 2.22e-62 211
MS.gene84633.t1 MTR_4g017410 31.439 528 256 17 8 461 3 498 4.18e-60 206
MS.gene84633.t1 MTR_7g066490 40.566 318 122 6 15 280 17 319 1.72e-57 196
MS.gene84633.t1 MTR_7g066490 47.706 109 56 1 327 435 302 409 1.22e-18 88.6
MS.gene84633.t1 MTR_1g014060 54.327 208 73 4 232 438 203 389 3.80e-56 192
MS.gene84633.t1 MTR_1g014060 46.053 228 67 4 23 196 9 234 1.02e-52 183
MS.gene84633.t1 MTR_1g014060 27.885 208 130 8 222 419 12 209 1.10e-11 67.0
MS.gene84633.t1 MTR_4g017550 30.416 457 245 12 41 429 18 469 5.92e-47 169
MS.gene84633.t1 MTR_7g063720 40.000 230 114 4 210 437 23 230 1.67e-45 159
MS.gene84633.t1 MTR_7g100420 32.304 421 220 8 15 433 40 397 7.55e-43 157
MS.gene84633.t1 MTR_7g063690 40.329 243 118 8 1 237 1 222 3.28e-36 134
MS.gene84633.t1 MTR_7g063850 31.935 310 178 8 134 437 4 286 1.93e-34 131
MS.gene84633.t1 MTR_8g023240 27.706 462 269 16 15 427 38 483 1.59e-31 128
MS.gene84633.t1 MTR_7g062270 38.503 187 59 4 1 135 1 183 1.60e-28 117
MS.gene84633.t1 MTR_2g067310 46.154 143 44 5 25 144 58 190 4.03e-25 103
MS.gene84633.t1 MTR_8g445860 30.769 234 128 8 210 425 13 230 3.34e-24 101
MS.gene84633.t1 MTR_8g445860 28.125 224 106 4 15 183 14 237 9.79e-18 82.8
MS.gene84633.t1 MTR_7g066390 54.082 98 44 1 345 442 35 131 8.13e-24 97.8
MS.gene84633.t1 MTR_7g063870 36.646 161 67 5 3 162 25 151 2.52e-20 90.9
MS.gene84633.t1 MTR_1g115440 28.384 229 106 4 13 183 10 238 3.61e-17 81.3
MS.gene84633.t1 MTR_7g063760 49.296 71 35 1 368 437 1 71 7.77e-17 75.5
MS.gene84633.t1 MTR_0150s0010 26.496 234 114 5 8 183 4 237 1.70e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84633.t1 AT5G01120 32.200 500 257 14 15 444 10 497 9.18e-59 202
MS.gene84633.t1 AT5G43240 31.619 525 245 15 15 450 10 509 4.80e-55 192
MS.gene84633.t1 AT5G43240 31.619 525 245 15 15 450 10 509 4.80e-55 192
MS.gene84633.t1 AT5G43240 31.619 525 245 15 15 450 10 509 4.80e-55 192
MS.gene84633.t1 AT5G01140 30.335 478 234 11 17 433 12 451 4.67e-50 178
MS.gene84633.t1 AT3G09140 30.321 498 250 12 17 433 12 493 1.04e-48 175
MS.gene84633.t1 AT5G01150 31.340 485 248 12 17 433 12 479 3.15e-47 171
MS.gene84633.t1 AT5G01150 24.723 271 166 8 205 450 4 261 2.16e-13 72.8
MS.gene84633.t1 AT5G01130 30.737 475 233 13 15 433 10 444 2.57e-45 164
MS.gene84633.t1 AT5G01130 29.016 193 109 7 17 182 255 446 8.22e-11 64.3
MS.gene84633.t1 AT3G09110 32.797 311 151 5 17 272 12 319 9.00e-45 160
MS.gene84633.t1 AT3G09140 28.707 526 250 13 17 433 12 521 3.68e-43 160
MS.gene84633.t1 AT3G09120 31.511 311 152 5 13 264 5 313 7.66e-35 133
MS.gene84633.t1 AT3G09120 27.468 233 143 8 209 425 5 227 4.91e-11 64.3
MS.gene84633.t1 AT5G43240 30.376 372 206 11 107 450 19 365 1.87e-30 122

Find 87 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAACAGTTCTTATAAAT+TGG 0.162711 7.3:-38618530 None:intergenic
GCTTCTTAACATTGCCTTTA+GGG 0.201640 7.3:+38617060 MS.gene84633:CDS
TCCTCCACCAAAGTAGATTT+TGG 0.204635 7.3:-38618711 None:intergenic
GAGGAAAGAGTTATCAAAAT+TGG 0.208695 7.3:+38618366 MS.gene84633:CDS
TTGGGATCAACCAATTTAAA+TGG 0.251681 7.3:-38618207 None:intergenic
TGGTTCTTGAGTTCAAATTC+TGG 0.273673 7.3:-38618045 None:intergenic
TAATCTTCCATGGAGTTTCT+AGG 0.280992 7.3:-38617199 None:intergenic
TAATGTTCGCCTGAGAATTT+TGG 0.296526 7.3:+38616971 MS.gene84633:CDS
AGTCCCTCTACATGATTTAG+AGG 0.308031 7.3:+38618347 MS.gene84633:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.310196 7.3:+38617059 MS.gene84633:CDS
CAGCCTACTTAAAGCTTCAT+TGG 0.321652 7.3:+38618476 MS.gene84633:CDS
AACAATATTGAGTTTCTGAT+TGG 0.324199 7.3:+38617748 MS.gene84633:CDS
GGTTGATCCCAAGTCTTCTA+TGG 0.337630 7.3:+38618218 MS.gene84633:CDS
CAAAGGACCATCAATGTATA+TGG 0.337667 7.3:+38618257 MS.gene84633:CDS
AGTACTTCGTGTGCGAGAAT+TGG 0.338229 7.3:+38617266 MS.gene84633:CDS
TTTGGTTTAGCCCCATCTTC+AGG 0.343943 7.3:-38618693 None:intergenic
CAGCACCAATTGGTAATATC+TGG 0.361156 7.3:-38618065 None:intergenic
CATATACATTGATGGTCCTT+TGG 0.380788 7.3:-38618256 None:intergenic
TAGAAATGACATAGTAGAAA+TGG 0.386822 7.3:-38618313 None:intergenic
TTCAACTGATTCAGTTTGAA+TGG 0.387314 7.3:-38616940 None:intergenic
CCAATTTATAAGAACTGTTA+AGG 0.387413 7.3:+38618530 MS.gene84633:CDS
TCAACTTCTGCTCCTGAAGA+TGG 0.397724 7.3:+38618681 MS.gene84633:CDS
GGTTCTTGAGTTCAAATTCT+GGG 0.401760 7.3:-38618044 None:intergenic
TTAAATCTACTTCAAAAGCT+TGG 0.402949 7.3:+38617478 MS.gene84633:CDS
TCCTGACCTTACAAAAGAAA+TGG 0.404064 7.3:+38618143 MS.gene84633:CDS
GCTCTTTCGTAAAATAAAAT+CGG 0.406696 7.3:-38617698 None:intergenic
CTTTGTCCACCAAAATTCTC+AGG 0.410215 7.3:-38616980 None:intergenic
GTAAAATAAAATCGGTCAAA+GGG 0.412435 7.3:-38617690 None:intergenic
GTACTTCGTGTGCGAGAATT+GGG 0.414321 7.3:+38617267 MS.gene84633:CDS
TAGTAATACCTGTATGTTAC+GGG 0.419068 7.3:-38618745 None:intergenic
CAACTTCTGCTCCTGAAGAT+GGG 0.421746 7.3:+38618682 MS.gene84633:CDS
CAAATTCTGTTTGTCGAAGC+AGG 0.430694 7.3:+38617835 MS.gene84633:CDS
GATTCAAATTATCAACAGAT+TGG 0.441439 7.3:-38617720 None:intergenic
TCTGTCACCATATACATTGA+TGG 0.453671 7.3:-38618264 None:intergenic
CGCAAGAAAGCAGCACCAAT+TGG 0.454787 7.3:-38618075 None:intergenic
CATATGCAACACTCCTCCTA+AGG 0.479612 7.3:-38617899 None:intergenic
GGCTAAACCAAAATCTACTT+TGG 0.484146 7.3:+38618704 MS.gene84633:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.493604 7.3:+38617907 MS.gene84633:CDS
CGAGACTATTGATGCTATTG+AGG 0.494678 7.3:+38617504 MS.gene84633:CDS
ATTCCAATGAAGCTTTAAGT+AGG 0.497354 7.3:-38618479 None:intergenic
ATAGTAATACCTGTATGTTA+CGG 0.499348 7.3:-38618746 None:intergenic
CGTAAAATAAAATCGGTCAA+AGG 0.508363 7.3:-38617691 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.508934 7.3:+38617011 MS.gene84633:CDS
TTTCTAACCTTCCCCTTAGG+AGG 0.508980 7.3:+38617886 MS.gene84633:CDS
TAGTTTGTCTTTGAGTCCCT+CGG 0.510679 7.3:-38618004 None:intergenic
ACCAAAATCTACTTTGGTGG+AGG 0.521894 7.3:+38618710 MS.gene84633:CDS
TCGGACATTAAATATATGTC+CGG 0.525232 7.3:-38617985 None:intergenic
AAGAACCAGATATTACCAAT+TGG 0.527915 7.3:+38618060 MS.gene84633:CDS
GCGCCTGCCCCGTAACATAC+AGG 0.534922 7.3:+38618737 MS.gene84633:CDS
CTATATTTAGTTTCAGCTGT+CGG 0.539959 7.3:-38617225 None:intergenic
CTGTCGGCAGTAATCTTCCA+TGG 0.545539 7.3:-38617209 None:intergenic
AGTCTAGCAATAGTCCCTAA+AGG 0.549076 7.3:-38617074 None:intergenic
GATCTTCGCAAAGCCAATGC+AGG 0.551154 7.3:-38619373 None:intergenic
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.3:-38617898 None:intergenic
GAATTGGGATTGTAGAAGAA+AGG 0.552800 7.3:+38617282 MS.gene84633:CDS
TGTTGACATCAACAAGAAAG+AGG 0.557623 7.3:+38617534 MS.gene84633:CDS
AGTTATCAAAATTGGCGTCA+AGG 0.564487 7.3:+38618374 MS.gene84633:CDS
AGAGAACAAGACTCCTGCAT+TGG 0.566936 7.3:+38619360 MS.gene84633:CDS
TCAAATTCTGGGGCAATGAG+AGG 0.568559 7.3:-38618033 None:intergenic
TAAACCAAAATCTACTTTGG+TGG 0.568709 7.3:+38618707 MS.gene84633:CDS
AACTTCTGCTCCTGAAGATG+GGG 0.581248 7.3:+38618683 MS.gene84633:CDS
GTTCTTGAGTTCAAATTCTG+GGG 0.581800 7.3:-38618043 None:intergenic
TGGCTTTGCGAAGATCAACT+AGG 0.584230 7.3:+38619380 MS.gene84633:CDS
CTTTCCTCTAAATCATGTAG+AGG 0.584914 7.3:-38618351 None:intergenic
GACATATATTTAATGTCCGA+GGG 0.587051 7.3:+38617988 MS.gene84633:CDS
CAACACTCCTCCTAAGGGGA+AGG 0.595804 7.3:-38617893 None:intergenic
ATACCTGTATGTTACGGGGC+AGG 0.595942 7.3:-38618740 None:intergenic
CTCGCACACGAAGTACTGCA+AGG 0.596798 7.3:-38617260 None:intergenic
GGACATATATTTAATGTCCG+AGG 0.602933 7.3:+38617987 MS.gene84633:CDS
ATAGTAGAAATGGACGACAT+TGG 0.606118 7.3:-38618303 None:intergenic
GTCTATCCTCATCAGATGGT+AGG 0.607538 7.3:-38617774 None:intergenic
GCAAAATCATCATATGCCAA+AGG 0.610317 7.3:+38618240 MS.gene84633:CDS
TGTGTATGCTGAGGCTGGGA+AGG 0.614514 7.3:+38617016 MS.gene84633:CDS
ACTGCAACCTAGAAACTCCA+TGG 0.614771 7.3:+38617192 MS.gene84633:CDS
TATTGCTAGACTCATTGCTA+AGG 0.622835 7.3:+38617085 MS.gene84633:CDS
ATTTGTCTATCCTCATCAGA+TGG 0.623409 7.3:-38617778 None:intergenic
TTTCCTCTAAATCATGTAGA+GGG 0.629418 7.3:-38618350 None:intergenic
TGGAGACCTACCATCTGATG+AGG 0.632344 7.3:+38617768 MS.gene84633:CDS
TAAAATAAAATCGGTCAAAG+GGG 0.636441 7.3:-38617689 None:intergenic
ACTATGATTACACAAGGCAG+AGG 0.642345 7.3:+38618118 MS.gene84633:CDS
AAGTTGTGTATGCTGAGGCT+GGG 0.646725 7.3:+38617012 MS.gene84633:CDS
TCGCACACGAAGTACTGCAA+GGG 0.658925 7.3:-38617259 None:intergenic
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.3:-38617897 None:intergenic
TATCAAAATTGGCGTCAAGG+AGG 0.703000 7.3:+38618377 MS.gene84633:CDS
AGTAATACCTGTATGTTACG+GGG 0.732614 7.3:-38618744 None:intergenic
ATACTTACTATGATTACACA+AGG 0.733669 7.3:+38618112 MS.gene84633:CDS
GAACAAAGTTGTGTATGCTG+AGG 0.744300 7.3:+38617007 MS.gene84633:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTGATTAACAATAT+AGG + chr7.3:38619205-38619224 MS.gene84633:intron 10.0%
!!! ATTATTTCTTATTTTTGTAT+AGG + chr7.3:38617630-38617649 MS.gene84633:intron 10.0%
!! AAAGAAATGAAAAATTGTTT+AGG - chr7.3:38618908-38618927 None:intergenic 15.0%
!! TTTCTATATTGAAAAACTTT+GGG - chr7.3:38617381-38617400 None:intergenic 15.0%
!!! AAGTTTTTCAATATAGAAAA+TGG + chr7.3:38617382-38617401 MS.gene84633:intron 15.0%
!!! TTTTCTATATTGAAAAACTT+TGG - chr7.3:38617382-38617401 None:intergenic 15.0%
!! AAAAAATGCACCATTTAAAT+TGG + chr7.3:38618197-38618216 MS.gene84633:CDS 20.0%
!! ACTTGATAAGGAAAATATTT+AGG - chr7.3:38618566-38618585 None:intergenic 20.0%
!! ATATATAAAGTGTGAAGTAA+AGG - chr7.3:38619052-38619071 None:intergenic 20.0%
!!! AATAAACCATTTCTTTTGTA+AGG - chr7.3:38618152-38618171 None:intergenic 20.0%
!!! ACAATTTTTCATTTCTTTCA+TGG + chr7.3:38618910-38618929 MS.gene84633:intron 20.0%
!!! ATTAACAATATAGGTAGTTT+TGG + chr7.3:38619214-38619233 MS.gene84633:intron 20.0%
!!! TCATTATGTTTTTTGAGATT+AGG + chr7.3:38618943-38618962 MS.gene84633:intron 20.0%
! AACAATATTGAGTTTCTGAT+TGG + chr7.3:38617748-38617767 MS.gene84633:CDS 25.0%
! AGAGTAATCTAAACTTGATA+AGG - chr7.3:38618578-38618597 None:intergenic 25.0%
! ATACTTACTATGATTACACA+AGG + chr7.3:38618112-38618131 MS.gene84633:CDS 25.0%
! ATAGTAATACCTGTATGTTA+CGG - chr7.3:38618749-38618768 None:intergenic 25.0%
! ATTACTCTCTTCTTCATAAT+AGG + chr7.3:38618590-38618609 MS.gene84633:intron 25.0%
! ATTTATAAGAACTGTTAAGG+TGG + chr7.3:38618533-38618552 MS.gene84633:intron 25.0%
! CATACAGGTATTACTATTTA+TGG + chr7.3:38618752-38618771 MS.gene84633:intron 25.0%
! CCAATTTATAAGAACTGTTA+AGG + chr7.3:38618530-38618549 MS.gene84633:CDS 25.0%
! CCTTAACAGTTCTTATAAAT+TGG - chr7.3:38618533-38618552 None:intergenic 25.0%
! GATTCAAATTATCAACAGAT+TGG - chr7.3:38617723-38617742 None:intergenic 25.0%
! GCTCTTTCGTAAAATAAAAT+CGG - chr7.3:38617701-38617720 None:intergenic 25.0%
! GTAAAATAAAATCGGTCAAA+GGG - chr7.3:38617693-38617712 None:intergenic 25.0%
! TAAAATAAAATCGGTCAAAG+GGG - chr7.3:38617692-38617711 None:intergenic 25.0%
! TAGAAATGACATAGTAGAAA+TGG - chr7.3:38618316-38618335 None:intergenic 25.0%
! TATCATCAACAAAAGTAAGT+TGG - chr7.3:38618647-38618666 None:intergenic 25.0%
! TTAAATCTACTTCAAAAGCT+TGG + chr7.3:38617478-38617497 MS.gene84633:CDS 25.0%
! TTACTCTCTTCTTCATAATA+GGG + chr7.3:38618591-38618610 MS.gene84633:intron 25.0%
!! ACTTTTTGTTACATGTTACA+GGG + chr7.3:38618450-38618469 MS.gene84633:intron 25.0%
!! TGTCAGTATCTATATCTTTT+TGG + chr7.3:38619299-38619318 MS.gene84633:intron 25.0%
!!! TACTTTTTGTTACATGTTAC+AGG + chr7.3:38618449-38618468 MS.gene84633:intron 25.0%
!!! TATCTATATCTTTTTGGAAG+AGG + chr7.3:38619305-38619324 MS.gene84633:intron 25.0%
!!! TTTTTTGCAATATTGATGCA+TGG - chr7.3:38618829-38618848 None:intergenic 25.0%
AAGAACCAGATATTACCAAT+TGG + chr7.3:38618060-38618079 MS.gene84633:CDS 30.0%
ACAAAAAGTAAGTGTAGTGT+TGG - chr7.3:38618439-38618458 None:intergenic 30.0%
ACAATTACAAGATGAACATG+TGG - chr7.3:38618406-38618425 None:intergenic 30.0%
ATACATAACAATAGCAACAC+TGG - chr7.3:38619265-38619284 None:intergenic 30.0%
CGTAAAATAAAATCGGTCAA+AGG - chr7.3:38617694-38617713 None:intergenic 30.0%
GACATATATTTAATGTCCGA+GGG + chr7.3:38617988-38618007 MS.gene84633:CDS 30.0%
GAGGAAAGAGTTATCAAAAT+TGG + chr7.3:38618366-38618385 MS.gene84633:CDS 30.0%
TAAACCAAAATCTACTTTGG+TGG + chr7.3:38618707-38618726 MS.gene84633:CDS 30.0%
TAGTAATACCTGTATGTTAC+GGG - chr7.3:38618748-38618767 None:intergenic 30.0%
TCGGACATTAAATATATGTC+CGG - chr7.3:38617988-38618007 None:intergenic 30.0%
TTGGGATCAACCAATTTAAA+TGG - chr7.3:38618210-38618229 None:intergenic 30.0%
TTTCCTCTAAATCATGTAGA+GGG - chr7.3:38618353-38618372 None:intergenic 30.0%
! AAACTTGCTCCAAAAACATT+AGG - chr7.3:38617460-38617479 None:intergenic 30.0%
! AACACTGGTATTTTCAATTC+AGG + chr7.3:38619333-38619352 MS.gene84633:intron 30.0%
! CTATATTTAGTTTCAGCTGT+CGG - chr7.3:38617228-38617247 None:intergenic 30.0%
! TGTGTTATGCCTAATGTTTT+TGG + chr7.3:38617448-38617467 MS.gene84633:CDS 30.0%
! TTCAACTGATTCAGTTTGAA+TGG - chr7.3:38616943-38616962 None:intergenic 30.0%
! TTTTCCCACAATAGCATTTT+TGG - chr7.3:38617339-38617358 None:intergenic 30.0%
!! ATTCCAATGAAGCTTTAAGT+AGG - chr7.3:38618482-38618501 None:intergenic 30.0%
!! TCAACAAAAGTAAGTTGGTT+AGG - chr7.3:38618642-38618661 None:intergenic 30.0%
!! TCAACATCTGCTTTGAAAAA+TGG + chr7.3:38618501-38618520 MS.gene84633:CDS 30.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.3:38617059-38617078 MS.gene84633:CDS 35.0%
AGGAACCAAAAATGCTATTG+TGG + chr7.3:38617331-38617350 MS.gene84633:intron 35.0%
AGGAAGCAAAAAGTCAACAA+GGG - chr7.3:38618888-38618907 None:intergenic 35.0%
AGTAATACCTGTATGTTACG+GGG - chr7.3:38618747-38618766 None:intergenic 35.0%
AGTTATCAAAATTGGCGTCA+AGG + chr7.3:38618374-38618393 MS.gene84633:CDS 35.0%
ATAGTAGAAATGGACGACAT+TGG - chr7.3:38618306-38618325 None:intergenic 35.0%
ATTTGTCTATCCTCATCAGA+TGG - chr7.3:38617781-38617800 None:intergenic 35.0%
CAAAGGACCATCAATGTATA+TGG + chr7.3:38618257-38618276 MS.gene84633:CDS 35.0%
CTTTCCTCTAAATCATGTAG+AGG - chr7.3:38618354-38618373 None:intergenic 35.0%
GAATTGGGATTGTAGAAGAA+AGG + chr7.3:38617282-38617301 MS.gene84633:CDS 35.0%
GATTGTAGAAGAAAGGTAAG+TGG + chr7.3:38617289-38617308 MS.gene84633:intron 35.0%
GCAAAATCATCATATGCCAA+AGG + chr7.3:38618240-38618259 MS.gene84633:CDS 35.0%
GCTTCATCAAATAGAGGATT+CGG - chr7.3:38618807-38618826 None:intergenic 35.0%
GCTTCTTAACATTGCCTTTA+GGG + chr7.3:38617060-38617079 MS.gene84633:CDS 35.0%
GGAACCAAAAATGCTATTGT+GGG + chr7.3:38617332-38617351 MS.gene84633:intron 35.0%
GGACATATATTTAATGTCCG+AGG + chr7.3:38617987-38618006 MS.gene84633:CDS 35.0%
GGCTAAACCAAAATCTACTT+TGG + chr7.3:38618704-38618723 MS.gene84633:CDS 35.0%
GGTTCCTAAAAAAGCTCAAA+AGG - chr7.3:38617318-38617337 None:intergenic 35.0%
GGTTCTTGAGTTCAAATTCT+GGG - chr7.3:38618047-38618066 None:intergenic 35.0%
GTTCTTGAGTTCAAATTCTG+GGG - chr7.3:38618046-38618065 None:intergenic 35.0%
TAATCTTCCATGGAGTTTCT+AGG - chr7.3:38617202-38617221 None:intergenic 35.0%
TAGGAAGCAAAAAGTCAACA+AGG - chr7.3:38618889-38618908 None:intergenic 35.0%
TATTGCTAGACTCATTGCTA+AGG + chr7.3:38617085-38617104 MS.gene84633:CDS 35.0%
TCAACAAGGGTTTGACATAT+TGG - chr7.3:38618875-38618894 None:intergenic 35.0%
TCCTGACCTTACAAAAGAAA+TGG + chr7.3:38618143-38618162 MS.gene84633:CDS 35.0%
TCTGTCACCATATACATTGA+TGG - chr7.3:38618267-38618286 None:intergenic 35.0%
TGAGACATCATTTGAACTGT+CGG - chr7.3:38619022-38619041 None:intergenic 35.0%
TGGTTCTTGAGTTCAAATTC+TGG - chr7.3:38618048-38618067 None:intergenic 35.0%
TGTTGACATCAACAAGAAAG+AGG + chr7.3:38617534-38617553 MS.gene84633:CDS 35.0%
! ACCATTTCTTTTGTAAGGTC+AGG - chr7.3:38618147-38618166 None:intergenic 35.0%
! CATATACATTGATGGTCCTT+TGG - chr7.3:38618259-38618278 None:intergenic 35.0%
! GATTTTGCCATAGAAGACTT+GGG - chr7.3:38618228-38618247 None:intergenic 35.0%
! TAATGTTCGCCTGAGAATTT+TGG + chr7.3:38616971-38616990 MS.gene84633:CDS 35.0%
! TGATTTTGCCATAGAAGACT+TGG - chr7.3:38618229-38618248 None:intergenic 35.0%
! TTTTCGTCTTTAAGCAGCAT+TGG + chr7.3:38617931-38617950 MS.gene84633:CDS 35.0%
!! GATGCCTTTTGAGCTTTTTT+AGG + chr7.3:38617311-38617330 MS.gene84633:intron 35.0%
!! TGTTGATGATATGAACATGC+AGG + chr7.3:38618656-38618675 MS.gene84633:intron 35.0%
!!! AGAAAGAGGCATGCTTTTTT+CGG + chr7.3:38617548-38617567 MS.gene84633:intron 35.0%
ACCAAAATCTACTTTGGTGG+AGG + chr7.3:38618710-38618729 MS.gene84633:CDS 40.0%
ACTATGATTACACAAGGCAG+AGG + chr7.3:38618118-38618137 MS.gene84633:CDS 40.0%
AGTCCCTCTACATGATTTAG+AGG + chr7.3:38618347-38618366 MS.gene84633:CDS 40.0%
AGTCTAGCAATAGTCCCTAA+AGG - chr7.3:38617077-38617096 None:intergenic 40.0%
ATATGCAACACTCCTCCTAA+GGG - chr7.3:38617901-38617920 None:intergenic 40.0%
CAAATTCTGTTTGTCGAAGC+AGG + chr7.3:38617835-38617854 MS.gene84633:CDS 40.0%
CAGCCTACTTAAAGCTTCAT+TGG + chr7.3:38618476-38618495 MS.gene84633:CDS 40.0%
CGAGACTATTGATGCTATTG+AGG + chr7.3:38617504-38617523 MS.gene84633:CDS 40.0%
CTTTGTCCACCAAAATTCTC+AGG - chr7.3:38616983-38617002 None:intergenic 40.0%
GAACAAAGTTGTGTATGCTG+AGG + chr7.3:38617007-38617026 MS.gene84633:CDS 40.0%
GCAACGATGAACACTAACAA+AGG + chr7.3:38619158-38619177 MS.gene84633:intron 40.0%
TATCAAAATTGGCGTCAAGG+AGG + chr7.3:38618377-38618396 MS.gene84633:CDS 40.0%
TGCATGGCTTCATCAAATAG+AGG - chr7.3:38618813-38618832 None:intergenic 40.0%
TTTGTGCTCACTTACTTGCA+AGG + chr7.3:38617162-38617181 MS.gene84633:intron 40.0%
! AGTTTTCTAACCTTCCCCTT+AGG + chr7.3:38617883-38617902 MS.gene84633:CDS 40.0%
! CAGCACCAATTGGTAATATC+TGG - chr7.3:38618068-38618087 None:intergenic 40.0%
! TAGTTTGTCTTTGAGTCCCT+CGG - chr7.3:38618007-38618026 None:intergenic 40.0%
! TCCTCCACCAAAGTAGATTT+TGG - chr7.3:38618714-38618733 None:intergenic 40.0%
!! GAGCTTTTCTGATTTGAGTC+CGG + chr7.3:38617966-38617985 MS.gene84633:CDS 40.0%
AAAGTTGTGTATGCTGAGGC+TGG + chr7.3:38617011-38617030 MS.gene84633:CDS 45.0%
AACTTCTGCTCCTGAAGATG+GGG + chr7.3:38618683-38618702 MS.gene84633:CDS 45.0%
AAGTTGTGTATGCTGAGGCT+GGG + chr7.3:38617012-38617031 MS.gene84633:CDS 45.0%
ACTGCAACCTAGAAACTCCA+TGG + chr7.3:38617192-38617211 MS.gene84633:CDS 45.0%
AGAGAACAAGACTCCTGCAT+TGG + chr7.3:38619360-38619379 MS.gene84633:CDS 45.0%
AGTACTTCGTGTGCGAGAAT+TGG + chr7.3:38617266-38617285 MS.gene84633:CDS 45.0%
CAACTTCTGCTCCTGAAGAT+GGG + chr7.3:38618682-38618701 MS.gene84633:CDS 45.0%
CATATGCAACACTCCTCCTA+AGG - chr7.3:38617902-38617921 None:intergenic 45.0%
GGTTGATCCCAAGTCTTCTA+TGG + chr7.3:38618218-38618237 MS.gene84633:CDS 45.0%
GTACTTCGTGTGCGAGAATT+GGG + chr7.3:38617267-38617286 MS.gene84633:CDS 45.0%
GTCTATCCTCATCAGATGGT+AGG - chr7.3:38617777-38617796 None:intergenic 45.0%
TATGCAACACTCCTCCTAAG+GGG - chr7.3:38617900-38617919 None:intergenic 45.0%
TCAACTTCTGCTCCTGAAGA+TGG + chr7.3:38618681-38618700 MS.gene84633:CDS 45.0%
TTGGAAGAGGAAGCTAACAC+TGG + chr7.3:38619318-38619337 MS.gene84633:intron 45.0%
TTTCTAACCTTCCCCTTAGG+AGG + chr7.3:38617886-38617905 MS.gene84633:CDS 45.0%
! TGGCTTTGCGAAGATCAACT+AGG + chr7.3:38619380-38619399 MS.gene84633:CDS 45.0%
! TGTTCGCCTGAGAATTTTGG+TGG + chr7.3:38616974-38616993 MS.gene84633:CDS 45.0%
! TTTGGTTTAGCCCCATCTTC+AGG - chr7.3:38618696-38618715 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.3:38617907-38617926 MS.gene84633:CDS 45.0%
!! TCAAATTCTGGGGCAATGAG+AGG - chr7.3:38618036-38618055 None:intergenic 45.0%
ATACCTGTATGTTACGGGGC+AGG - chr7.3:38618743-38618762 None:intergenic 50.0%
CGCAAGAAAGCAGCACCAAT+TGG - chr7.3:38618078-38618097 None:intergenic 50.0%
CTGTCGGCAGTAATCTTCCA+TGG - chr7.3:38617212-38617231 None:intergenic 50.0%
GATCTTCGCAAAGCCAATGC+AGG - chr7.3:38619376-38619395 None:intergenic 50.0%
TGGAGACCTACCATCTGATG+AGG + chr7.3:38617768-38617787 MS.gene84633:CDS 50.0%
!! TCGCACACGAAGTACTGCAA+GGG - chr7.3:38617262-38617281 None:intergenic 50.0%
CAACACTCCTCCTAAGGGGA+AGG - chr7.3:38617896-38617915 None:intergenic 55.0%
TGTGTATGCTGAGGCTGGGA+AGG + chr7.3:38617016-38617035 MS.gene84633:CDS 55.0%
!! CTCGCACACGAAGTACTGCA+AGG - chr7.3:38617263-38617282 None:intergenic 55.0%
GCGCCTGCCCCGTAACATAC+AGG + chr7.3:38618737-38618756 MS.gene84633:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38616933 38619429 38616933 ID=MS.gene84633
chr7.3 mRNA 38616933 38619429 38616933 ID=MS.gene84633.t1;Parent=MS.gene84633
chr7.3 exon 38616933 38617124 38616933 ID=MS.gene84633.t1.exon1;Parent=MS.gene84633.t1
chr7.3 CDS 38616933 38617124 38616933 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
chr7.3 exon 38617184 38617303 38617184 ID=MS.gene84633.t1.exon2;Parent=MS.gene84633.t1
chr7.3 CDS 38617184 38617303 38617184 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
chr7.3 exon 38617385 38617555 38617385 ID=MS.gene84633.t1.exon3;Parent=MS.gene84633.t1
chr7.3 CDS 38617385 38617555 38617385 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
chr7.3 exon 38617652 38618398 38617652 ID=MS.gene84633.t1.exon4;Parent=MS.gene84633.t1
chr7.3 CDS 38617652 38618398 38617652 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
chr7.3 exon 38618471 38618551 38618471 ID=MS.gene84633.t1.exon5;Parent=MS.gene84633.t1
chr7.3 CDS 38618471 38618551 38618471 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
chr7.3 exon 38618678 38618758 38618678 ID=MS.gene84633.t1.exon6;Parent=MS.gene84633.t1
chr7.3 CDS 38618678 38618758 38618678 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
chr7.3 exon 38619355 38619429 38619355 ID=MS.gene84633.t1.exon7;Parent=MS.gene84633.t1
chr7.3 CDS 38619355 38619429 38619355 ID=cds.MS.gene84633.t1;Parent=MS.gene84633.t1
Gene Sequence

>MS.gene84633

ATGGCTTCCATTCAAACTGAATCAGTTGAACAAGTTGATAATGTTCGCCTGAGAATTTTGGTGGACAAAGAAAAGAACAAAGTTGTGTATGCTGAGGCTGGGAAGGATTTCGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGGACTATTGCTAGACTCATTGCTAAGGACTCAAATATTGAAGCAGTGAAATATTGAAGCAGTTAAATCTTGATCAACAATATTTGTGCTCACTTACTTGCAAGGAAATGCTACTGCAACCTAGAAACTCCATGGAAGATTACTGCCGACAGCTGAAACTAAATATAGACGACACAGAACCCTTGCAGTACTTCGTGTGCGAGAATTGGGATTGTAGAAGAAAGGTAAGTGGATGCCTTTTGAGCTTTTTTAGGAACCAAAAATGCTATTGTGGGAAAATAATGAACAGAGAAGTATTCCCAAAGTTTTTCAATATAGAAAATGGTTTTGTGAAAGAAAATGCTACTTTTATCATTTGTGATGATCTTTGTGTTATGCCTAATGTTTTTGGAGCAAGTTTAAATCTACTTCAAAAGCTTGGAGTCGAGACTATTGATGCTATTGAGGAACAAGCTGTTGACATCAACAAGAAAGAGGCATGCTTTTTTCGGCTTCTATATCATCTACGTTATACATATCATCTTTGAATATTGATTATTTTTTCTAATTGATTATTTCTTATTTTTGTATAGGTAGTTGATCTTCTCAAGTTATCATTAATCTCAAAGACCCCTTTGACCGATTTTATTTTACGAAAGAGCCAATCTGTTGATAATTTGAATCTAAGAAACAATATTGAGTTTCTGATTGGAGACCTACCATCTGATGAGGATAGACAAATGTCTGTGAAAGTGACATTAAGAAAATCGAATGAACAAATTCTGTTTGTCGAAGCAGGAGATGATTTTATTGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTAGGAGGAGTGTTGCATATGCTTCAAGGATTTTCGTCTTTAAGCAGCATTGGTAACTTGTACAAGAGCTTTTCTGATTTGAGTCCGGACATATATTTAATGTCCGAGGGACTCAAAGACAAACTATGTAAGCCTCTCATTGCCCCAGAATTTGAACTCAAGAACCAGATATTACCAATTGGTGCTGCTTTCTTGCGTGTGAATTATTCTCATACTTACTATGATTACACAAGGCAGAGGTATCCTGACCTTACAAAAGAAATGGTTTATTCTAACTATAATAGAATTTATGAAGAAAAAAATGCACCATTTAAATTGGTTGATCCCAAGTCTTCTATGGCAAAATCATCATATGCCAAAGGACCATCAATGTATATGGTGACAGACGACTTGTGTGTGAGTCCAATGTCGTCCATTTCTACTATGTCATTTCTAAAAAGATTTAAAGTCCCTCTACATGATTTAGAGGAAAGAGTTATCAAAATTGGCGTCAAGGAGGTATCCACATGTTCATCTTGTAATTGTTTTTTATTTGCCAACACTACACTTACTTTTTGTTACATGTTACAGGGTCTCAGCCTACTTAAAGCTTCATTGGAATCAACATCTGCTTTGAAAAATGGTCTCAGCCAATTTATAAGAACTGTTAAGGTGGAGAAATGCCTAAATATTTTCCTTATCAAGTTTAGATTACTCTCTTCTTCATAATAGGGTTATTTCGTGCTAAAGATATACTAACCTAACCAACTTACTTTTGTTGATGATATGAACATGCAGGTCTCAACTTCTGCTCCTGAAGATGGGGCTAAACCAAAATCTACTTTGGTGGAGGAATTGCGCCTGCCCCGTAACATACAGGTATTACTATTTATGGTTTAATTACATCTTTGTTGATATGTTTAACCGAATCCTCTATTTGATGAAGCCATGCATCAATATTGCAAAAAAGTTTAGTTACAATACATAATACTCCAATATGTCAAACCCTTGTTGACTTTTTGCTTCCTAAACAATTTTTCATTTCTTTCATGGATTTTTACGTTCATTATGTTTTTTGAGATTAGGCGTGTCTTCATGTCTTACATGCATCAGTATACGACACTTGCATTCACACAAGTCCGACAGTTCAAATGATGTCTCATTTTTTTCCTTTACTTCACACTTTATATATTCTTTAGACACATCTCTTTAGACATATCTCTGAGATTTAACGATGTGTATAAGCAACAATACTATGAGACTTAAAGATGCGTAGAAGCAACGATGAACACTAACAAAGGTTGAAAACACATTAAATACATGTGTATAATTTGATTAACAATATAGGTAGTTTTGGAATAATGTTTGTCTTTTATTTAGTGCCAGTGTTGCTATTGTTATGTATTTGTAGTGTTGATATGTCAGTATCTATATCTTTTTGGAAGAGGAAGCTAACACTGGTATTTTCAATTCAGGAAAAAGAGAACAAGACTCCTGCATTGGCTTTGCGAAGATCAACTAGGAAACGCAAAGCTAGCGATCATGCTTGA
Protein sequence

>MS.gene84633.t1

MASIQTESVEQVDNVRLRILVDKEKNKVVYAEAGKDFVDALFSFLTLPLGTIARLIAKDSNIEAEMLLQPRNSMEDYCRQLKLNIDDTEPLQYFVCENWDCRRKFFNIENGFVKENATFIICDDLCVMPNVFGASLNLLQKLGVETIDAIEEQAVDINKKEVVDLLKLSLISKTPLTDFILRKSQSVDNLNLRNNIEFLIGDLPSDEDRQMSVKVTLRKSNEQILFVEAGDDFIDFVFSFLTFPLGGVLHMLQGFSSLSSIGNLYKSFSDLSPDIYLMSEGLKDKLCKPLIAPEFELKNQILPIGAAFLRVNYSHTYYDYTRQRYPDLTKEMVYSNYNRIYEEKNAPFKLVDPKSSMAKSSYAKGPSMYMVTDDLCVSPMSSISTMSFLKRFKVPLHDLEERVIKIGVKEGLSLLKASLESTSALKNGLSQFIRTVKVSTSAPEDGAKPKSTLVEELRLPRNIQEKENKTPALALRRSTRKRKASDHA