AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055182

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055182.t1 MTR_7g063890 90.476 504 38 1 1 494 1 504 0.0 875
MS.gene055182.t1 MTR_7g063900 70.757 489 130 4 19 495 2 489 0.0 664
MS.gene055182.t1 MTR_7g063840 55.918 490 187 11 19 495 1 474 3.99e-165 475
MS.gene055182.t1 MTR_7g062280 52.209 498 198 10 25 495 8 492 9.69e-157 455
MS.gene055182.t1 MTR_7g063660 53.306 484 201 10 25 495 7 478 3.23e-154 448
MS.gene055182.t1 MTR_7g062300 53.638 481 187 13 25 487 10 472 8.94e-154 446
MS.gene055182.t1 MTR_7g063880 53.209 483 186 11 25 492 9 466 3.59e-153 445
MS.gene055182.t1 MTR_7g063820 54.365 504 183 15 19 495 2 485 2.06e-149 436
MS.gene055182.t1 MTR_7g063920 50.928 485 168 11 25 495 9 437 2.17e-141 414
MS.gene055182.t1 MTR_7g063830 51.250 480 165 13 28 489 11 439 2.92e-141 414
MS.gene055182.t1 MTR_3g007740 48.665 487 178 12 25 489 7 443 1.61e-122 365
MS.gene055182.t1 MTR_7g063670 45.142 494 202 13 24 495 12 458 2.12e-112 340
MS.gene055182.t1 MTR_7g066570 40.594 505 245 13 18 492 5 484 1.54e-102 318
MS.gene055182.t1 MTR_7g058710 37.795 508 256 12 20 495 5 484 4.64e-95 296
MS.gene055182.t1 MTR_7g066260 41.372 481 232 14 26 488 14 462 1.17e-94 296
MS.gene055182.t1 MTR_3g065200 42.257 452 212 12 27 475 3 408 1.01e-91 287
MS.gene055182.t1 MTR_7g012680 38.835 515 232 17 1 495 1 452 2.26e-87 275
MS.gene055182.t1 MTR_7g066340 37.349 498 234 16 20 488 5 453 2.98e-86 273
MS.gene055182.t1 MTR_7g066430 37.832 489 270 12 27 488 4 485 2.27e-84 269
MS.gene055182.t1 MTR_7g066430 25.751 233 154 6 23 242 253 479 3.04e-14 75.5
MS.gene055182.t1 MTR_7g066410 35.838 519 268 13 24 489 7 513 2.23e-83 267
MS.gene055182.t1 MTR_7g066410 26.609 233 152 6 23 242 280 506 5.01e-17 84.0
MS.gene055182.t1 MTR_7g066350 36.885 488 243 11 19 484 1 445 9.46e-83 264
MS.gene055182.t1 MTR_4g019310 35.317 504 275 15 21 488 2 490 2.51e-78 253
MS.gene055182.t1 MTR_7g066480 37.967 482 207 15 26 489 15 422 3.64e-77 248
MS.gene055182.t1 MTR_7g066290 37.347 490 210 12 26 488 14 433 3.21e-76 246
MS.gene055182.t1 MTR_1g041315 34.091 484 237 12 26 472 13 451 9.04e-75 244
MS.gene055182.t1 MTR_7g066580 35.908 479 244 15 33 485 1 442 7.07e-73 238
MS.gene055182.t1 MTR_7g066580 26.316 247 143 9 21 243 209 440 4.40e-13 71.6
MS.gene055182.t1 MTR_7g066400 35.258 485 224 14 27 484 12 433 1.17e-71 234
MS.gene055182.t1 MTR_7g066400 25.551 227 142 7 18 242 230 431 2.65e-14 75.5
MS.gene055182.t1 MTR_7g066360 36.939 490 245 12 12 485 5 446 8.20e-71 233
MS.gene055182.t1 MTR_7g063720 49.231 260 92 7 248 495 2 233 1.36e-66 214
MS.gene055182.t1 MTR_7g063720 29.817 218 131 7 27 242 23 220 1.13e-18 85.9
MS.gene055182.t1 MTR_1g014060 33.404 470 208 12 40 495 13 391 3.79e-66 218
MS.gene055182.t1 MTR_7g066310 33.474 475 207 14 26 488 6 383 1.27e-61 207
MS.gene055182.t1 MTR_2g029400 32.505 483 226 12 12 477 5 404 1.18e-60 204
MS.gene055182.t1 MTR_4g017440 31.518 514 293 16 21 488 2 502 1.20e-58 202
MS.gene055182.t1 MTR_7g066490 41.000 300 149 5 27 316 16 297 8.84e-58 197
MS.gene055182.t1 MTR_7g063850 41.967 305 153 8 196 494 2 288 7.61e-57 191
MS.gene055182.t1 MTR_4g017830 31.191 529 288 20 19 494 2 507 1.41e-56 197
MS.gene055182.t1 MTR_4g017410 29.903 515 297 14 19 494 1 490 3.22e-55 192
MS.gene055182.t1 MTR_4g017610 30.390 487 280 17 30 484 16 475 1.61e-52 185
MS.gene055182.t1 MTR_7g063690 42.599 277 91 7 24 295 9 222 2.61e-52 177
MS.gene055182.t1 MTR_7g058700 36.176 340 154 9 39 345 531 840 4.85e-52 190
MS.gene055182.t1 MTR_7g058700 37.324 142 75 2 368 495 787 928 1.13e-12 70.9
MS.gene055182.t1 MTR_7g062270 53.757 173 75 3 25 194 8 178 1.41e-51 180
MS.gene055182.t1 MTR_4g019340 30.572 507 274 17 16 476 27 501 6.11e-49 176
MS.gene055182.t1 MTR_4g017470 29.825 513 265 15 28 494 13 476 8.44e-49 175
MS.gene055182.t1 MTR_7g100420 39.450 327 164 10 171 484 88 393 8.09e-45 162
MS.gene055182.t1 MTR_7g100420 62.745 51 19 0 20 70 32 82 8.98e-12 67.4
MS.gene055182.t1 MTR_7g066280 31.387 411 233 14 106 488 1 390 8.54e-41 151
MS.gene055182.t1 MTR_8g023240 27.049 488 302 14 18 482 27 483 7.56e-39 149
MS.gene055182.t1 MTR_4g017550 29.485 485 284 19 41 485 4 470 4.21e-38 145
MS.gene055182.t1 MTR_4g017550 29.508 244 135 8 19 241 239 466 1.34e-14 76.3
MS.gene055182.t1 MTR_7g066680 35.161 310 139 9 225 484 37 334 9.84e-35 133
MS.gene055182.t1 MTR_7g066680 25.926 189 121 6 27 205 86 265 4.36e-12 67.8
MS.gene055182.t1 MTR_8g445860 31.330 233 142 6 27 248 13 238 3.09e-26 107
MS.gene055182.t1 MTR_1g115440 29.918 244 143 6 20 247 7 238 9.89e-22 94.4
MS.gene055182.t1 MTR_1g115440 26.549 226 152 4 268 482 11 233 1.94e-12 67.4
MS.gene055182.t1 MTR_7g063760 56.164 73 31 1 424 495 2 74 3.35e-21 87.8
MS.gene055182.t1 MTR_0150s0010 28.980 245 147 6 20 247 3 237 5.17e-21 92.4
MS.gene055182.t1 MTR_0150s0010 28.261 230 141 7 268 481 10 231 1.21e-13 70.9
MS.gene055182.t1 MTR_1g115455 28.571 245 148 7 19 248 1 233 2.23e-18 84.7
MS.gene055182.t1 MTR_2g067310 34.946 186 79 6 27 208 43 190 1.17e-17 82.8
MS.gene055182.t1 MTR_7g063870 56.250 64 27 1 170 232 94 157 2.12e-13 70.5
MS.gene055182.t1 MTR_7g063870 58.491 53 22 0 25 77 29 81 1.13e-12 68.6
MS.gene055182.t1 MTR_7g066390 43.529 85 44 2 404 488 42 122 4.44e-11 61.6
MS.gene055182.t1 MTR_1g115450 36.364 88 51 1 27 114 7 89 4.85e-11 61.2
MS.gene055182.t1 MTR_0150s0030 38.824 85 46 2 27 110 8 87 7.69e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055182.t1 AT3G09140 32.692 520 275 13 19 489 1 494 1.08e-62 213
MS.gene055182.t1 AT5G01120 33.470 487 279 15 30 484 12 485 4.05e-58 201
MS.gene055182.t1 AT3G09140 31.022 548 275 14 19 489 1 522 6.98e-58 200
MS.gene055182.t1 AT5G43240 32.649 487 287 12 30 484 12 489 1.55e-55 194
MS.gene055182.t1 AT5G43240 32.649 487 287 12 30 484 12 489 1.55e-55 194
MS.gene055182.t1 AT5G43240 32.649 487 287 12 30 484 12 489 1.55e-55 194
MS.gene055182.t1 AT5G01150 31.673 502 288 13 19 488 1 479 5.00e-55 192
MS.gene055182.t1 AT5G01130 29.592 490 279 12 19 488 1 444 2.31e-50 178
MS.gene055182.t1 AT3G09110 36.713 286 164 4 30 303 12 292 2.61e-48 170
MS.gene055182.t1 AT5G01140 28.889 495 283 15 19 488 1 451 7.87e-46 167
MS.gene055182.t1 AT3G09120 33.555 301 170 5 24 303 3 294 3.80e-40 147
MS.gene055182.t1 AT3G09120 27.426 237 147 7 263 482 1 229 9.75e-12 66.6
MS.gene055182.t1 AT5G37320 27.723 505 288 19 27 489 11 480 3.45e-33 132
MS.gene055182.t1 AT5G43240 28.701 331 210 8 173 484 22 345 5.26e-19 89.0

Find 73 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTTCTTGACACATTT+TGG 0.067658 7.4:+40239755 MS.gene055182:CDS
ATCACTTGCCTTAGGTGATT+TGG 0.194221 7.4:-40240612 None:intergenic
CGCATTATTATTACTATAAT+AGG 0.196846 7.4:+40240468 MS.gene055182:CDS
CTAAGCATGCTTCAGAATTC+TGG 0.220777 7.4:+40239857 MS.gene055182:CDS
CACTTGTTAACCAATGTTAA+AGG 0.225881 7.4:+40240965 MS.gene055182:CDS
AATACTTGATCTTCTCTATT+AGG 0.268542 7.4:-40239323 None:intergenic
TCAAGTATTGTTGAAACTTC+TGG 0.275481 7.4:+40239337 MS.gene055182:CDS
TAATCTTCAGAAGAGTTCTT+TGG 0.301786 7.4:-40239587 None:intergenic
GGCGGAGTTGTTCGAGTATT+AGG 0.318282 7.4:+40240277 MS.gene055182:CDS
ATTAGGAGGGAATTGCTCTT+TGG 0.319846 7.4:+40240294 MS.gene055182:CDS
CTATAATAGGTTCCTAGGTT+TGG 0.323823 7.4:+40240481 MS.gene055182:CDS
CAAAGTACTTCATATGTTGC+AGG 0.327554 7.4:+40239651 MS.gene055182:CDS
TCACTTGCCTTAGGTGATTT+GGG 0.328981 7.4:-40240611 None:intergenic
TATAATAGGTTCCTAGGTTT+GGG 0.331462 7.4:+40240482 MS.gene055182:CDS
CAACATATGAAGTACTTTGT+AGG 0.355917 7.4:-40239647 None:intergenic
TTCAGACAACCAATGGTAAC+TGG 0.356771 7.4:-40239488 None:intergenic
TCACCTAAGGCAAGTGATAA+TGG 0.365777 7.4:+40240617 MS.gene055182:CDS
TTCAGCAATTAAGACTTTGT+TGG 0.376814 7.4:-40239372 None:intergenic
TTAGGAGGGAATTGCTCTTT+GGG 0.382688 7.4:+40240295 MS.gene055182:CDS
ACTTGTTAACCAATGTTAAA+GGG 0.387534 7.4:+40240966 MS.gene055182:CDS
GTATGTGGTTACAGATGATT+TGG 0.389987 7.4:+40240667 MS.gene055182:CDS
TATTACTATAATAGGTTCCT+AGG 0.390455 7.4:+40240476 MS.gene055182:CDS
AATCTTCAGAAGAGTTCTTT+GGG 0.396497 7.4:-40239586 None:intergenic
AGCTTCTTCACATTGCCATT+TGG 0.413796 7.4:+40239425 MS.gene055182:CDS
GGGAAAGGATTTGTTAAAGA+AGG 0.419018 7.4:+40239776 MS.gene055182:CDS
GCAGTGTGTGAGCATATTAA+AGG 0.427614 7.4:+40240901 MS.gene055182:intron
ATTTGGGATTATTACTAACT+AGG 0.430912 7.4:-40240595 None:intergenic
CAAATCTGTCAGAGTAGACT+TGG 0.447463 7.4:-40240074 None:intergenic
AAAGTCTTAATTGCTGAAGC+AGG 0.453365 7.4:+40239377 MS.gene055182:CDS
TGACAAAAGAAGCAAAGAAA+AGG 0.458594 7.4:+40240372 MS.gene055182:CDS
TCATTTCTCCCCTTTAACAT+TGG 0.461782 7.4:-40240975 None:intergenic
TCCTACCTCTTTGATGCCAA+TGG 0.477529 7.4:-40240777 None:intergenic
TGTCTGAACAAACTTTATCA+AGG 0.490886 7.4:+40239503 MS.gene055182:CDS
AAGAGAAAACACTTGACCTC+TGG 0.496645 7.4:-40240120 None:intergenic
TCTCAACGTCACTAAGGAAA+AGG 0.499259 7.4:+40239913 MS.gene055182:CDS
AGTCTTACAATATTTCCAAA+TGG 0.501776 7.4:-40239440 None:intergenic
TCGTCATCGGCTCTAACAAA+TGG 0.502409 7.4:+40240935 MS.gene055182:CDS
TAACCATTATCACTTGCCTT+AGG 0.502444 7.4:-40240620 None:intergenic
AAGGAAAAGCTTGTCACCAT+TGG 0.519499 7.4:+40240761 MS.gene055182:CDS
AGCCCTGTGAAATCTGAGTT+CGG 0.530696 7.4:-40239836 None:intergenic
ACACTTGACCTCTGGATCAA+CGG 0.538261 7.4:-40240112 None:intergenic
GGCATCTTTGTCATCGTCAT+CGG 0.538445 7.4:+40240922 MS.gene055182:CDS
GGCAAGATATTGTTTGCTCA+AGG 0.542741 7.4:+40240205 MS.gene055182:CDS
TGTTGATCCACACTTGGCAC+CGG 0.545388 7.4:+40240397 MS.gene055182:CDS
ATACCGAACTCAGATTTCAC+AGG 0.547125 7.4:+40239833 MS.gene055182:CDS
AATGACTCTCAACGTCACTA+AGG 0.552198 7.4:+40239907 MS.gene055182:CDS
TTTCCTTCACATCATGAAGA+GGG 0.554951 7.4:-40240745 None:intergenic
AAGAGGGGACCAGTTACCAT+TGG 0.557514 7.4:+40239479 MS.gene055182:CDS
TTGCTTAATTTGTTGAACTC+CGG 0.560839 7.4:-40240416 None:intergenic
CTTGTTAACCAATGTTAAAG+GGG 0.566746 7.4:+40240967 MS.gene055182:CDS
AAGAAAGTTGAACGACTCAA+AGG 0.567556 7.4:-40239743 None:intergenic
AAGTTTGTTCAGACAACCAA+TGG 0.569049 7.4:-40239495 None:intergenic
TCGTAGAGAAGGACTCAAAG+AGG 0.569922 7.4:+40239462 MS.gene055182:CDS
GGAGTTGTTCGAGTATTAGG+AGG 0.571089 7.4:+40240280 MS.gene055182:CDS
TAATAATCCCAAATCACCTA+AGG 0.572826 7.4:+40240604 MS.gene055182:CDS
AGTCCCTCTTCATGATGTGA+AGG 0.573117 7.4:+40240742 MS.gene055182:CDS
AAAAGAAACCGTTGATCCAG+AGG 0.583692 7.4:+40240104 MS.gene055182:CDS
TTGAACTCCGGTGCCAAGTG+TGG 0.586212 7.4:-40240404 None:intergenic
TATTGTAAGACTCGTAGAGA+AGG 0.586657 7.4:+40239451 MS.gene055182:CDS
TTTCTCACATTTCCTTTGGG+CGG 0.589849 7.4:+40240259 MS.gene055182:CDS
AAGTCTTAATTGCTGAAGCA+GGG 0.590272 7.4:+40239378 MS.gene055182:CDS
CGTAGAGAAGGACTCAAAGA+GGG 0.590650 7.4:+40239463 MS.gene055182:CDS
AATGGTTATGTAAAAGCAGA+GGG 0.594931 7.4:+40240635 MS.gene055182:CDS
AGAGGGACTCAGAAAGTATG+TGG 0.607969 7.4:+40240652 MS.gene055182:CDS
AAGGCTTGTTGATCCACACT+TGG 0.608575 7.4:+40240391 MS.gene055182:CDS
TAATGCTATTACCCAAACCT+AGG 0.609121 7.4:-40240493 None:intergenic
ACTCGAACAACTCCGCCCAA+AGG 0.639784 7.4:-40240271 None:intergenic
TTATGTGAGAACTGATAGAG+AGG 0.644156 7.4:+40240568 MS.gene055182:CDS
GAGTTGTTCGAGTATTAGGA+GGG 0.647420 7.4:+40240281 MS.gene055182:CDS
TAATGGTTATGTAAAAGCAG+AGG 0.652935 7.4:+40240634 MS.gene055182:CDS
GTAGAGAAGGACTCAAAGAG+GGG 0.681398 7.4:+40239464 MS.gene055182:CDS
TGTCACCATTGGCATCAAAG+AGG 0.685309 7.4:+40240772 MS.gene055182:CDS
TACCGAACTCAGATTTCACA+GGG 0.701290 7.4:+40239834 MS.gene055182:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGATGATAAAAATTAAA+AGG - chr7.4:40239994-40240013 None:intergenic 10.0%
!!! ATTAAAAATAGATTTGAAAT+TGG - chr7.4:40240710-40240729 None:intergenic 10.0%
!!! GATTAATTAATATTTTGTAC+AGG + chr7.4:40240021-40240040 MS.gene055182:intron 15.0%
!! AAAAAACACAAGTTCAATAA+CGG + chr7.4:40239883-40239902 MS.gene055182:CDS 20.0%
!! CGCATTATTATTACTATAAT+AGG + chr7.4:40240468-40240487 MS.gene055182:CDS 20.0%
!! TGATGATAAAAATTAAAAGG+CGG - chr7.4:40239991-40240010 None:intergenic 20.0%
!!! ATTTTCGAAAAACTAACTTA+AGG - chr7.4:40240180-40240199 None:intergenic 20.0%
!!! TTAGTTTTTCGAAAATCAAA+TGG + chr7.4:40240184-40240203 MS.gene055182:CDS 20.0%
! AATACTTGATCTTCTCTATT+AGG - chr7.4:40239326-40239345 None:intergenic 25.0%
! AGTCTTACAATATTTCCAAA+TGG - chr7.4:40239443-40239462 None:intergenic 25.0%
! TATAAAGCAAGCAACAAATT+AGG - chr7.4:40239964-40239983 None:intergenic 25.0%
! TATTAAAAAAGAGGAGCAAA+AGG + chr7.4:40239268-40239287 MS.gene055182:CDS 25.0%
! TATTACTATAATAGGTTCCT+AGG + chr7.4:40240476-40240495 MS.gene055182:CDS 25.0%
!! AAAGGTTGCTATTAAAAAAG+AGG + chr7.4:40239286-40239305 MS.gene055182:CDS 25.0%
!! ACTTGTTAACCAATGTTAAA+GGG + chr7.4:40240966-40240985 MS.gene055182:CDS 25.0%
!! ATTTGGGATTATTACTAACT+AGG - chr7.4:40240598-40240617 None:intergenic 25.0%
AATCTTCAGAAGAGTTCTTT+GGG - chr7.4:40239589-40239608 None:intergenic 30.0%
AATGGTTATGTAAAAGCAGA+GGG + chr7.4:40240635-40240654 MS.gene055182:CDS 30.0%
CTTGTTAACCAATGTTAAAG+GGG + chr7.4:40240967-40240986 MS.gene055182:CDS 30.0%
TAATAATCCCAAATCACCTA+AGG + chr7.4:40240604-40240623 MS.gene055182:CDS 30.0%
TAATCTTCAGAAGAGTTCTT+TGG - chr7.4:40239590-40239609 None:intergenic 30.0%
TAATGGTTATGTAAAAGCAG+AGG + chr7.4:40240634-40240653 MS.gene055182:CDS 30.0%
TATAATAGGTTCCTAGGTTT+GGG + chr7.4:40240482-40240501 MS.gene055182:CDS 30.0%
TATTAAAAAAGAGGAGCAAG+TGG + chr7.4:40239295-40239314 MS.gene055182:CDS 30.0%
TGACAAAAGAAGCAAAGAAA+AGG + chr7.4:40240372-40240391 MS.gene055182:CDS 30.0%
TGTCTGAACAAACTTTATCA+AGG + chr7.4:40239503-40239522 MS.gene055182:CDS 30.0%
TTCAGCAATTAAGACTTTGT+TGG - chr7.4:40239375-40239394 None:intergenic 30.0%
! AAGTTTTCTCACATTTCCTT+TGG + chr7.4:40240255-40240274 MS.gene055182:CDS 30.0%
! AGTTTTCTCACATTTCCTTT+GGG + chr7.4:40240256-40240275 MS.gene055182:CDS 30.0%
! CAACATATGAAGTACTTTGT+AGG - chr7.4:40239650-40239669 None:intergenic 30.0%
! CAACTTTCTTGACACATTTT+GGG + chr7.4:40239756-40239775 MS.gene055182:CDS 30.0%
! CACTTGTTAACCAATGTTAA+AGG + chr7.4:40240965-40240984 MS.gene055182:CDS 30.0%
! TCAACTTTCTTGACACATTT+TGG + chr7.4:40239755-40239774 MS.gene055182:CDS 30.0%
! TCAAGTATTGTTGAAACTTC+TGG + chr7.4:40239337-40239356 MS.gene055182:CDS 30.0%
!! TTGCTTAATTTGTTGAACTC+CGG - chr7.4:40240419-40240438 None:intergenic 30.0%
AAAGTCTTAATTGCTGAAGC+AGG + chr7.4:40239377-40239396 MS.gene055182:CDS 35.0%
AAGAAAGTTGAACGACTCAA+AGG - chr7.4:40239746-40239765 None:intergenic 35.0%
AAGTCTTAATTGCTGAAGCA+GGG + chr7.4:40239378-40239397 MS.gene055182:CDS 35.0%
ACAGACAAAAACTGTGTGTA+TGG + chr7.4:40239716-40239735 MS.gene055182:CDS 35.0%
CTATAATAGGTTCCTAGGTT+TGG + chr7.4:40240481-40240500 MS.gene055182:CDS 35.0%
GTATGTGGTTACAGATGATT+TGG + chr7.4:40240667-40240686 MS.gene055182:CDS 35.0%
TAACCATTATCACTTGCCTT+AGG - chr7.4:40240623-40240642 None:intergenic 35.0%
TAATGCTATTACCCAAACCT+AGG - chr7.4:40240496-40240515 None:intergenic 35.0%
TATTGTAAGACTCGTAGAGA+AGG + chr7.4:40239451-40239470 MS.gene055182:CDS 35.0%
TCATTTCTCCCCTTTAACAT+TGG - chr7.4:40240978-40240997 None:intergenic 35.0%
TTATGTGAGAACTGATAGAG+AGG + chr7.4:40240568-40240587 MS.gene055182:CDS 35.0%
TTTCCTTCACATCATGAAGA+GGG - chr7.4:40240748-40240767 None:intergenic 35.0%
! AAGTTTGTTCAGACAACCAA+TGG - chr7.4:40239498-40239517 None:intergenic 35.0%
! CAAAGTACTTCATATGTTGC+AGG + chr7.4:40239651-40239670 MS.gene055182:CDS 35.0%
! TTTTCCTTCACATCATGAAG+AGG - chr7.4:40240749-40240768 None:intergenic 35.0%
!! GGGAAAGGATTTGTTAAAGA+AGG + chr7.4:40239776-40239795 MS.gene055182:CDS 35.0%
!! TTCTTGACACATTTTGGGAA+AGG + chr7.4:40239761-40239780 MS.gene055182:CDS 35.0%
AAAAGAAACCGTTGATCCAG+AGG + chr7.4:40240104-40240123 MS.gene055182:CDS 40.0%
AAGAGAAAACACTTGACCTC+TGG - chr7.4:40240123-40240142 None:intergenic 40.0%
AAGGAAAAGCTTGTCACCAT+TGG + chr7.4:40240761-40240780 MS.gene055182:CDS 40.0%
AATGACTCTCAACGTCACTA+AGG + chr7.4:40239907-40239926 MS.gene055182:CDS 40.0%
AGCTTCTTCACATTGCCATT+TGG + chr7.4:40239425-40239444 MS.gene055182:CDS 40.0%
ATACCGAACTCAGATTTCAC+AGG + chr7.4:40239833-40239852 MS.gene055182:CDS 40.0%
ATCACTTGCCTTAGGTGATT+TGG - chr7.4:40240615-40240634 None:intergenic 40.0%
ATTAGGAGGGAATTGCTCTT+TGG + chr7.4:40240294-40240313 MS.gene055182:CDS 40.0%
CAAATCTGTCAGAGTAGACT+TGG - chr7.4:40240077-40240096 None:intergenic 40.0%
CTAAGCATGCTTCAGAATTC+TGG + chr7.4:40239857-40239876 MS.gene055182:CDS 40.0%
GAGTTGTTCGAGTATTAGGA+GGG + chr7.4:40240281-40240300 MS.gene055182:CDS 40.0%
GCAGTGTGTGAGCATATTAA+AGG + chr7.4:40240901-40240920 MS.gene055182:intron 40.0%
GGCAAGATATTGTTTGCTCA+AGG + chr7.4:40240205-40240224 MS.gene055182:CDS 40.0%
TACCGAACTCAGATTTCACA+GGG + chr7.4:40239834-40239853 MS.gene055182:CDS 40.0%
TCACCTAAGGCAAGTGATAA+TGG + chr7.4:40240617-40240636 MS.gene055182:CDS 40.0%
TCACTTGCCTTAGGTGATTT+GGG - chr7.4:40240614-40240633 None:intergenic 40.0%
TCTCAACGTCACTAAGGAAA+AGG + chr7.4:40239913-40239932 MS.gene055182:CDS 40.0%
TTAGGAGGGAATTGCTCTTT+GGG + chr7.4:40240295-40240314 MS.gene055182:CDS 40.0%
TTCAGACAACCAATGGTAAC+TGG - chr7.4:40239491-40239510 None:intergenic 40.0%
TTTCTCACATTTCCTTTGGG+CGG + chr7.4:40240259-40240278 MS.gene055182:CDS 40.0%
!!! TCACTATGCGTCGTGTTTTT+TGG + chr7.4:40240826-40240845 MS.gene055182:intron 40.0%
ACACTTGACCTCTGGATCAA+CGG - chr7.4:40240115-40240134 None:intergenic 45.0%
ACCATTGGCATCAAAGAGGT+AGG + chr7.4:40240776-40240795 MS.gene055182:intron 45.0%
AGCCCTGTGAAATCTGAGTT+CGG - chr7.4:40239839-40239858 None:intergenic 45.0%
AGTCCCTCTTCATGATGTGA+AGG + chr7.4:40240742-40240761 MS.gene055182:CDS 45.0%
CGTAGAGAAGGACTCAAAGA+GGG + chr7.4:40239463-40239482 MS.gene055182:CDS 45.0%
GGAGTTGTTCGAGTATTAGG+AGG + chr7.4:40240280-40240299 MS.gene055182:CDS 45.0%
GGCATCTTTGTCATCGTCAT+CGG + chr7.4:40240922-40240941 MS.gene055182:CDS 45.0%
GTAGAGAAGGACTCAAAGAG+GGG + chr7.4:40239464-40239483 MS.gene055182:CDS 45.0%
TCCTACCTCTTTGATGCCAA+TGG - chr7.4:40240780-40240799 None:intergenic 45.0%
TCGTAGAGAAGGACTCAAAG+AGG + chr7.4:40239462-40239481 MS.gene055182:CDS 45.0%
TGTCACCATTGGCATCAAAG+AGG + chr7.4:40240772-40240791 MS.gene055182:CDS 45.0%
! AGAGGGACTCAGAAAGTATG+TGG + chr7.4:40240652-40240671 MS.gene055182:CDS 45.0%
! TGCGCACGTAGCTTTTGAAT+AGG - chr7.4:40240452-40240471 None:intergenic 45.0%
!! AAGGCTTGTTGATCCACACT+TGG + chr7.4:40240391-40240410 MS.gene055182:CDS 45.0%
!! TCGTCATCGGCTCTAACAAA+TGG + chr7.4:40240935-40240954 MS.gene055182:CDS 45.0%
AAGAGGGGACCAGTTACCAT+TGG + chr7.4:40239479-40239498 MS.gene055182:CDS 50.0%
GGCGGAGTTGTTCGAGTATT+AGG + chr7.4:40240277-40240296 MS.gene055182:CDS 50.0%
TGTTGATCCACACTTGGCAC+CGG + chr7.4:40240397-40240416 MS.gene055182:CDS 50.0%
ACTCGAACAACTCCGCCCAA+AGG - chr7.4:40240274-40240293 None:intergenic 55.0%
! TTGAACTCCGGTGCCAAGTG+TGG - chr7.4:40240407-40240426 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40239260 40240997 40239260 ID=MS.gene055182
chr7.4 mRNA 40239260 40240997 40239260 ID=MS.gene055182.t1;Parent=MS.gene055182
chr7.4 exon 40239260 40239934 40239260 ID=MS.gene055182.t1.exon1;Parent=MS.gene055182.t1
chr7.4 CDS 40239260 40239934 40239260 ID=cds.MS.gene055182.t1;Parent=MS.gene055182.t1
chr7.4 exon 40240043 40240316 40240043 ID=MS.gene055182.t1.exon2;Parent=MS.gene055182.t1
chr7.4 CDS 40240043 40240316 40240043 ID=cds.MS.gene055182.t1;Parent=MS.gene055182.t1
chr7.4 exon 40240348 40240793 40240348 ID=MS.gene055182.t1.exon3;Parent=MS.gene055182.t1
chr7.4 CDS 40240348 40240793 40240348 ID=cds.MS.gene055182.t1;Parent=MS.gene055182.t1
chr7.4 exon 40240905 40240997 40240905 ID=MS.gene055182.t1.exon4;Parent=MS.gene055182.t1
chr7.4 CDS 40240905 40240997 40240905 ID=cds.MS.gene055182.t1;Parent=MS.gene055182.t1
Gene Sequence

>MS.gene055182

ATGGCTGCTATTAAAAAAGAGGAGCAAAAGGTTGCTATTAAAAAAGAGGAGCAAGTGGCTGCTCCTAATAGAGAAGATCAAGTATTGTTGAAACTTCTGGTGAACAAAGAGACCAACAAAGTCTTAATTGCTGAAGCAGGGAAAGAGTTTGTTGATGTTCTATTTAGCTTCTTCACATTGCCATTTGGAAATATTGTAAGACTCGTAGAGAAGGACTCAAAGAGGGGACCAGTTACCATTGGTTGTCTGAACAAACTTTATCAAGGTGTGATAGATCTCGATGAAGAGTGTATGCAGACTGAGACAAGCAAAGAAATGTTATTGCACCCAAAGAACTCTTCTGAAGATTATTGCATCAATCTTAAACTTAACATTGATGACATTAAGCCTACAAAGTACTTCATATGTTGCAGGTTTGATTGTCAATGCATACAACAGCATAATTTATACACTTCTACAGACAAAAACTGTGTGTATGGAAAACCTTTGAGTCGTTCAACTTTCTTGACACATTTTGGGAAAGGATTTGTTAAAGAAGGTGCAACTTTTGTTATTACTGATGATCTAACTGTCATACCGAACTCAGATTTCACAGGGCTAAGCATGCTTCAGAATTCTGGATTAAAAAACACAAGTTCAATAACGGAAATGACTCTCAACGTCACTAAGGAAAAGGTTATTATAAATTTATAGCTGTGTTTCCTAATTTGTTGCTTGCTTTATATACACCGCCTTTTAATTTTTATCATCAATTCATTTGCGATTAATTAATATTTTGTACAGGTACTCGATCTTTTAAAATGTGCATTGCTCTCCAAGTCTACTCTGACAGATTTGTTTCTAAAAAAGAAACCGTTGATCCAGAGGTCAAGTGTTTTCTCTTGTGATGCTGTCATCAAGAAAAATATCAAGATCAGCCTTAAGTTAGTTTTTCGAAAATCAAATGGCAAGATATTGTTTGCTCAAGGAGAAACAGATTTTGTTGACTTACTTTTAAGTTTTCTCACATTTCCTTTGGGCGGAGTTGTTCGAGTATTAGGAGGGAATTGCTCTTTGGGTAACATTTGATTTTCTGTACAAGAGCATAGTTGATTTGCATGCAAACACATTTTTGACAAAAGAAGCAAAGAAAAGGCTTGTTGATCCACACTTGGCACCGGAGTTCAACAAATTAAGCAAGCAGATATTACCTATTCAAAAGCTACGTGCGCATTATTATTACTATAATAGGTTCCTAGGTTTGGGTAATAGCATTATTCAGAATCAATTTTTCATTAGTGATGAAAATACGAGCAATGAATATGCAGATTATGTGAGAACTGATAGAGAGGTGAACCTAGTTAGTAATAATCCCAAATCACCTAAGGCAAGTGATAATGGTTATGTAAAAGCAGAGGGACTCAGAAAGTATGTGGTTACAGATGATTTGGTCATTGCAACGTCTTCTCCAATTTCAAATCTATTTTTAATCAACAATTTCAAAGTCCCTCTTCATGATGTGAAGGAAAAGCTTGTCACCATTGGCATCAAAGAGGTAGGAAATGACATAATTTATACATATATTTGTCACTATGCGTCGTGTTTTTTGGATTGCTAGATTGATTGAAGATACTCTTGCTAATTTTACATATTTGTGTTGTTGCAGTGTGTGAGCATATTAAAGGCATCTTTGTCATCGTCATCGGCTCTAACAAATGGTCTTCGTCACTTGTTAACCAATGTTAAAGGGGAGAAATGA
Protein sequence

>MS.gene055182.t1

MAAIKKEEQKVAIKKEEQVAAPNREDQVLLKLLVNKETNKVLIAEAGKEFVDVLFSFFTLPFGNIVRLVEKDSKRGPVTIGCLNKLYQGVIDLDEECMQTETSKEMLLHPKNSSEDYCINLKLNIDDIKPTKYFICCRFDCQCIQQHNLYTSTDKNCVYGKPLSRSTFLTHFGKGFVKEGATFVITDDLTVIPNSDFTGLSMLQNSGLKNTSSITEMTLNVTKEKVLDLLKCALLSKSTLTDLFLKKKPLIQRSSVFSCDAVIKKNIKISLKLVFRKSNGKILFAQGETDFVDLLLSFLTFPLGGVVRVLGGNCSLVDLHANTFLTKEAKKRLVDPHLAPEFNKLSKQILPIQKLRAHYYYYNRFLGLGNSIIQNQFFISDENTSNEYADYVRTDREVNLVSNNPKSPKASDNGYVKAEGLRKYVVTDDLVIATSSPISNLFLINNFKVPLHDVKEKLVTIGIKECVSILKASLSSSSALTNGLRHLLTNVKGEK