AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46162

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46162.t1 MTR_7g062300 82.415 472 62 3 1 451 1 472 0.0 766
MS.gene46162.t1 MTR_7g062280 78.776 490 69 2 5 459 3 492 0.0 758
MS.gene46162.t1 MTR_7g063920 65.756 476 107 4 1 459 1 437 0.0 576
MS.gene46162.t1 MTR_7g063880 56.108 483 172 10 1 458 1 468 4.89e-166 476
MS.gene46162.t1 MTR_7g063660 53.926 484 183 5 7 459 4 478 6.47e-165 474
MS.gene46162.t1 MTR_7g063840 54.927 477 183 8 8 459 5 474 7.15e-164 471
MS.gene46162.t1 MTR_7g063900 53.831 496 185 9 1 459 1 489 1.71e-159 460
MS.gene46162.t1 MTR_7g063830 55.411 462 184 11 1 458 1 444 1.80e-156 451
MS.gene46162.t1 MTR_7g063820 53.265 490 193 8 1 459 1 485 3.09e-149 434
MS.gene46162.t1 MTR_3g007740 53.305 469 166 11 8 453 5 443 1.05e-143 418
MS.gene46162.t1 MTR_7g063890 52.881 486 188 9 9 458 24 504 4.77e-136 401
MS.gene46162.t1 MTR_7g063670 48.739 476 188 8 10 459 13 458 1.84e-133 393
MS.gene46162.t1 MTR_7g066570 41.785 493 233 11 4 456 6 484 7.54e-113 344
MS.gene46162.t1 MTR_7g066260 43.220 472 238 11 1 452 1 462 5.09e-106 324
MS.gene46162.t1 MTR_7g066410 39.567 508 243 8 10 454 8 514 3.89e-105 322
MS.gene46162.t1 MTR_7g066410 25.000 240 153 8 6 229 278 506 2.32e-11 66.2
MS.gene46162.t1 MTR_7g066430 41.164 481 242 5 13 452 5 485 6.13e-105 321
MS.gene46162.t1 MTR_3g065200 43.516 455 181 10 12 439 3 408 3.16e-104 318
MS.gene46162.t1 MTR_7g066480 40.879 455 208 9 12 453 16 422 9.97e-100 305
MS.gene46162.t1 MTR_7g066340 39.446 469 251 11 1 452 1 453 4.72e-97 300
MS.gene46162.t1 MTR_7g012680 40.787 483 231 12 1 459 1 452 1.52e-96 298
MS.gene46162.t1 MTR_7g058710 37.400 500 256 13 1 459 1 484 7.68e-96 297
MS.gene46162.t1 MTR_7g066350 40.217 460 243 12 11 454 8 451 1.78e-92 288
MS.gene46162.t1 MTR_7g066290 40.085 469 228 11 1 452 1 433 1.39e-88 277
MS.gene46162.t1 MTR_7g066360 41.970 467 226 12 2 448 4 445 1.52e-88 278
MS.gene46162.t1 MTR_7g066490 40.000 450 205 9 12 453 16 408 4.47e-88 275
MS.gene46162.t1 MTR_7g062270 71.585 183 51 1 6 187 3 185 2.57e-87 272
MS.gene46162.t1 MTR_1g041315 36.543 457 257 9 3 436 5 451 9.70e-86 271
MS.gene46162.t1 MTR_7g066580 38.723 470 212 11 24 452 7 441 1.03e-85 270
MS.gene46162.t1 MTR_7g066580 28.205 234 147 9 11 230 214 440 1.61e-12 69.7
MS.gene46162.t1 MTR_7g066400 36.518 471 250 10 1 454 1 439 4.27e-84 266
MS.gene46162.t1 MTR_7g063720 54.936 233 96 4 235 459 2 233 5.71e-79 245
MS.gene46162.t1 MTR_7g063720 30.734 218 127 10 14 229 25 220 3.98e-16 78.2
MS.gene46162.t1 MTR_7g058700 36.980 457 208 11 24 459 531 928 1.03e-74 252
MS.gene46162.t1 MTR_4g019310 34.531 501 276 14 6 459 2 497 1.39e-73 240
MS.gene46162.t1 MTR_7g066310 34.298 449 217 10 11 452 6 383 1.07e-71 232
MS.gene46162.t1 MTR_7g063850 44.268 314 112 10 182 458 1 288 4.71e-65 211
MS.gene46162.t1 MTR_2g029400 31.343 469 223 7 2 440 4 403 1.67e-61 206
MS.gene46162.t1 MTR_4g017830 31.298 524 277 15 1 458 1 507 1.77e-57 198
MS.gene46162.t1 MTR_4g017410 31.818 506 274 18 6 458 3 490 5.23e-53 186
MS.gene46162.t1 MTR_7g063690 40.351 285 101 6 3 282 2 222 6.39e-51 173
MS.gene46162.t1 MTR_4g017440 30.344 524 283 17 1 458 1 508 2.45e-49 176
MS.gene46162.t1 MTR_4g019340 31.458 480 266 16 10 440 36 501 2.76e-49 176
MS.gene46162.t1 MTR_4g017610 30.321 498 269 15 5 448 2 475 3.45e-48 172
MS.gene46162.t1 MTR_7g066280 30.952 420 202 12 91 452 1 390 4.69e-48 170
MS.gene46162.t1 MTR_4g017470 28.820 517 268 13 1 458 1 476 3.31e-47 170
MS.gene46162.t1 MTR_7g100420 37.618 319 156 6 156 448 92 393 2.51e-45 163
MS.gene46162.t1 MTR_7g100420 64.000 50 18 0 6 55 33 82 1.25e-11 66.6
MS.gene46162.t1 MTR_1g014060 43.689 206 108 6 21 222 9 210 8.56e-43 155
MS.gene46162.t1 MTR_1g014060 39.785 186 97 2 285 459 210 391 1.82e-29 119
MS.gene46162.t1 MTR_1g014060 31.019 216 112 8 268 452 13 222 4.70e-14 73.9
MS.gene46162.t1 MTR_7g066680 35.621 306 120 8 212 448 37 334 1.62e-42 154
MS.gene46162.t1 MTR_4g017550 30.882 476 233 20 42 448 21 469 7.12e-36 138
MS.gene46162.t1 MTR_4g017550 29.362 235 131 9 13 228 248 466 4.98e-12 68.2
MS.gene46162.t1 MTR_8g023240 26.737 475 278 14 13 446 38 483 1.18e-33 133
MS.gene46162.t1 MTR_8g445860 33.061 245 138 7 3 235 8 238 4.40e-27 109
MS.gene46162.t1 MTR_1g115440 32.540 252 138 10 1 234 1 238 5.21e-25 103
MS.gene46162.t1 MTR_0150s0010 31.707 246 141 8 5 234 3 237 1.96e-23 99.0
MS.gene46162.t1 MTR_7g063760 52.703 74 34 1 387 459 1 74 1.19e-20 86.3
MS.gene46162.t1 MTR_7g066390 49.485 97 45 1 360 452 26 122 4.52e-19 84.3
MS.gene46162.t1 MTR_1g115455 28.629 248 149 8 1 235 1 233 6.42e-16 77.4
MS.gene46162.t1 MTR_2g067310 33.146 178 79 5 18 195 53 190 2.26e-14 73.2
MS.gene46162.t1 MTR_7g063870 55.357 56 25 0 6 61 25 80 5.11e-13 69.3
MS.gene46162.t1 MTR_7g063870 36.719 128 65 4 138 256 75 195 5.25e-13 69.3
MS.gene46162.t1 MTR_1g115450 36.000 125 64 5 3 121 2 116 1.79e-11 62.4
MS.gene46162.t1 MTR_1g115470 38.095 105 57 3 14 116 8 106 2.82e-11 65.9
MS.gene46162.t1 MTR_1g115435 27.083 240 135 9 3 235 2 208 3.02e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46162.t1 AT3G09140 31.569 510 278 15 1 454 1 495 7.60e-61 206
MS.gene46162.t1 AT5G01150 30.938 501 279 13 7 458 4 486 5.21e-60 204
MS.gene46162.t1 AT5G01120 32.383 491 268 13 13 451 10 488 1.89e-59 203
MS.gene46162.t1 AT5G01130 31.915 470 281 12 7 459 4 451 6.67e-56 192
MS.gene46162.t1 AT5G01130 25.909 220 140 6 249 446 3 221 1.53e-11 66.6
MS.gene46162.t1 AT3G09140 29.926 538 278 16 1 454 1 523 1.14e-55 193
MS.gene46162.t1 AT3G09110 35.443 316 191 6 14 320 11 322 7.74e-54 184
MS.gene46162.t1 AT5G01140 29.713 488 275 11 7 459 4 458 2.79e-53 186
MS.gene46162.t1 AT5G43240 31.237 493 269 11 13 448 10 489 8.53e-52 182
MS.gene46162.t1 AT5G43240 31.237 493 269 11 13 448 10 489 8.53e-52 182
MS.gene46162.t1 AT5G43240 31.237 493 269 11 13 448 10 489 8.53e-52 182
MS.gene46162.t1 AT3G09120 35.913 323 169 9 11 309 5 313 5.21e-47 165
MS.gene46162.t1 AT5G37320 28.659 492 281 14 13 454 10 481 1.04e-41 155
MS.gene46162.t1 AT5G43240 27.697 343 189 8 155 448 13 345 1.44e-16 81.6

Find 84 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCGAATATT+TGG 0.115220 7.2:+40364598 MS.gene46162:CDS
AAACTAGCTTCAGAATAATT+TGG 0.145102 7.2:-40364489 None:intergenic
TTTAGTCTGTTCAAGGAATT+TGG 0.172599 7.2:+40364201 MS.gene46162:CDS
ATCCTTGGCGGAGAGATTTA+AGG 0.228622 7.2:-40364104 None:intergenic
CTCCGCCAAGGATTTGTTAA+TGG 0.248773 7.2:+40364114 MS.gene46162:CDS
CCTGGTGTTCAAGAATATTA+TGG 0.266315 7.2:+40364781 MS.gene46162:CDS
GTATTTCGCTACAGATGATT+TGG 0.304476 7.2:+40364888 MS.gene46162:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.2:-40364928 None:intergenic
TTCACATGTTACAACTTTAG+TGG 0.335742 7.2:+40363997 MS.gene46162:CDS
TTTGGAGAAAATTGTTCCTT+TGG 0.339930 7.2:+40364616 MS.gene46162:CDS
CTTGTATAATCAATACAGTT+TGG 0.351386 7.2:-40364177 None:intergenic
TGAACACCAGGTTCAAGAAT+TGG 0.359482 7.2:-40364769 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.362521 7.2:+40364921 MS.gene46162:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.364093 7.2:+40364922 MS.gene46162:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.2:-40363683 None:intergenic
TACTCCTCTTAATGATTTGA+AGG 0.368693 7.2:+40364963 MS.gene46162:CDS
TTCTGTGATGTTGAAATTAG+TGG 0.377162 7.2:+40364460 MS.gene46162:CDS
TACAAGCTTTAGTCTGTTCA+AGG 0.384290 7.2:+40364194 MS.gene46162:CDS
AAGAAAATGAATTTATCTAC+TGG 0.389160 7.2:+40364826 MS.gene46162:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.2:+40363780 MS.gene46162:CDS
ATCTGCACTAACAAATGGTT+TGG 0.399886 7.2:+40365180 MS.gene46162:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.2:+40363763 MS.gene46162:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.2:+40363715 MS.gene46162:CDS
GCTTTCCAAGTCAACTTTGA+CGG 0.423899 7.2:+40364390 MS.gene46162:CDS
TCACATGTTAACTGAAGTTA+AGG 0.428371 7.2:+40365204 MS.gene46162:CDS
GCAGTGTCTTAGCATATTGA+AGG 0.430801 7.2:+40365141 MS.gene46162:intron
AACCATCCCTTGAGAGATCA+AGG 0.434730 7.2:+40364431 MS.gene46162:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.2:-40363925 None:intergenic
CAAATCCGTCAAAGTTGACT+TGG 0.454131 7.2:-40364395 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.2:+40364257 MS.gene46162:CDS
TAAATATTTGATATCAATAG+AGG 0.470147 7.2:+40364684 MS.gene46162:CDS
TCAATATCTGCACTAACAAA+TGG 0.474736 7.2:+40365175 MS.gene46162:CDS
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7.2:-40364919 None:intergenic
TCCTTGTGAGGGTTATGTCA+AGG 0.492200 7.2:+40364855 MS.gene46162:CDS
TACTGGGGTGATTCCTTGTG+AGG 0.493234 7.2:+40364843 MS.gene46162:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.2:+40364580 MS.gene46162:CDS
CTTGCTTAACTTCAACTGTC+GGG 0.500708 7.2:-40364737 None:intergenic
AGAAAATGAATTTATCTACT+GGG 0.502644 7.2:+40364827 MS.gene46162:CDS
TGTTCCTTTGGAAGCATTAG+CGG 0.508568 7.2:+40364628 MS.gene46162:CDS
CCATAATATTCTTGAACACC+AGG 0.509271 7.2:-40364781 None:intergenic
AGATAAACCTTGATCTCTCA+AGG 0.510599 7.2:-40364438 None:intergenic
CATTAAGAGGAGTATTCAAT+CGG 0.515584 7.2:-40364954 None:intergenic
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.2:+40364526 MS.gene46162:CDS
GGTTCAAGAATTGGTAATAC+CGG 0.523045 7.2:-40364760 None:intergenic
CCTTGTGAGGGTTATGTCAA+GGG 0.527421 7.2:+40364856 MS.gene46162:CDS
GAAGTGATCATATCGCGATA+GGG 0.528688 7.2:-40364024 None:intergenic
TGAAGTGATCATATCGCGAT+AGG 0.529742 7.2:-40364025 None:intergenic
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.2:+40364528 MS.gene46162:CDS
CTACACCATTAACAAATCCT+TGG 0.535180 7.2:-40364119 None:intergenic
TATCAATAGAGGCTAAGAAC+AGG 0.537740 7.2:+40364695 MS.gene46162:CDS
GCTTGCTTAACTTCAACTGT+CGG 0.540183 7.2:-40364738 None:intergenic
TTCCTTAAATCTCTCCGCCA+AGG 0.540627 7.2:+40364102 MS.gene46162:CDS
GTATTACCAATTCTTGAACC+TGG 0.545232 7.2:+40364763 MS.gene46162:CDS
CTTGTTTGCAGAAGCAGGGA+AGG 0.548076 7.2:+40363720 MS.gene46162:CDS
TTCAACTGTCGGGCAATGCA+AGG 0.551435 7.2:-40364727 None:intergenic
AACCTTGATCTCTCAAGGGA+TGG 0.552278 7.2:-40364433 None:intergenic
CACCATTAACAAATCCTTGG+CGG 0.552287 7.2:-40364116 None:intergenic
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.2:+40364233 MS.gene46162:CDS
TCTGTAGCGAAATACATAGC+TGG 0.560345 7.2:-40364880 None:intergenic
AGTTATCACAATCGGAGTCA+AGG 0.562616 7.2:+40364990 MS.gene46162:CDS
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.2:+40363716 MS.gene46162:CDS
GAAAATGAATTTATCTACTG+GGG 0.577208 7.2:+40364828 MS.gene46162:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.2:+40363789 MS.gene46162:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.2:-40363778 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.2:+40363803 MS.gene46162:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.2:+40363817 MS.gene46162:CDS
ACTGGGGTGATTCCTTGTGA+GGG 0.590492 7.2:+40364844 MS.gene46162:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.2:+40364527 MS.gene46162:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.2:+40363802 MS.gene46162:CDS
CATGTTAACTGAAGTTAAGG+AGG 0.596174 7.2:+40365207 MS.gene46162:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.2:-40363788 None:intergenic
AAGTGATCATATCGCGATAG+GGG 0.607736 7.2:-40364023 None:intergenic
TTTAAGAAAATCAGATAACA+AGG 0.611339 7.2:+40364510 MS.gene46162:CDS
ACAGTTGAAGTTAAGCAAGC+CGG 0.618213 7.2:+40364741 MS.gene46162:CDS
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.2:+40363846 MS.gene46162:CDS
GATAAACCTTGATCTCTCAA+GGG 0.631373 7.2:-40364437 None:intergenic
CAATCCGCTAATGCTTCCAA+AGG 0.636325 7.2:-40364632 None:intergenic
CCCTTGACATAACCCTCACA+AGG 0.637522 7.2:-40364856 None:intergenic
GATAAACATAAATGTCGATG+TGG 0.637729 7.2:+40364057 MS.gene46162:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.2:-40364592 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.2:+40363651 MS.gene46162:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.650226 7.2:+40363862 MS.gene46162:CDS
TATCACAATCGGAGTCAAGG+AGG 0.711974 7.2:+40364993 MS.gene46162:CDS
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.2:+40363918 MS.gene46162:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATATAAATTTTACTA+TGG - chr7.2:40365023-40365042 None:intergenic 10.0%
!!! TATTACTATTTTATATATAC+AGG + chr7.2:40364342-40364361 MS.gene46162:intron 10.0%
!! TAAATATTTGATATCAATAG+AGG + chr7.2:40364684-40364703 MS.gene46162:CDS 15.0%
!! AAGAAAATGAATTTATCTAC+TGG + chr7.2:40364826-40364845 MS.gene46162:CDS 20.0%
!! AGAAAATGAATTTATCTACT+GGG + chr7.2:40364827-40364846 MS.gene46162:CDS 20.0%
!! TTTAAGAAAATCAGATAACA+AGG + chr7.2:40364510-40364529 MS.gene46162:CDS 20.0%
! AAGGAAAAAGTTATCACAAT+CGG + chr7.2:40364982-40365001 MS.gene46162:CDS 25.0%
! CTTGTATAATCAATACAGTT+TGG - chr7.2:40364180-40364199 None:intergenic 25.0%
! GAAAATGAATTTATCTACTG+GGG + chr7.2:40364828-40364847 MS.gene46162:CDS 25.0%
!! AAACTAGCTTCAGAATAATT+TGG - chr7.2:40364492-40364511 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG + chr7.2:40363688-40363707 MS.gene46162:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG + chr7.2:40364576-40364595 MS.gene46162:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG + chr7.2:40364577-40364596 MS.gene46162:CDS 25.0%
!! TTTTCCTTCAAATCATTAAG+AGG - chr7.2:40364970-40364989 None:intergenic 25.0%
AAACTCACTCTATAAAAGTG+TGG + chr7.2:40363846-40363865 MS.gene46162:CDS 30.0%
ATTTAAATGTTCTACGCGTA+GGG + chr7.2:40365059-40365078 MS.gene46162:intron 30.0%
GATAAACATAAATGTCGATG+TGG + chr7.2:40364057-40364076 MS.gene46162:CDS 30.0%
TACTCCTCTTAATGATTTGA+AGG + chr7.2:40364963-40364982 MS.gene46162:CDS 30.0%
TATTTAAATGTTCTACGCGT+AGG + chr7.2:40365058-40365077 MS.gene46162:intron 30.0%
TCAATATCTGCACTAACAAA+TGG + chr7.2:40365175-40365194 MS.gene46162:CDS 30.0%
TCACATGTTAACTGAAGTTA+AGG + chr7.2:40365204-40365223 MS.gene46162:CDS 30.0%
TTCACATGTTACAACTTTAG+TGG + chr7.2:40363997-40364016 MS.gene46162:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG - chr7.2:40363686-40363705 None:intergenic 30.0%
TTCTGTGATGTTGAAATTAG+TGG + chr7.2:40364460-40364479 MS.gene46162:CDS 30.0%
TTTAGTCTGTTCAAGGAATT+TGG + chr7.2:40364201-40364220 MS.gene46162:CDS 30.0%
TTTGGAGAAAATTGTTCCTT+TGG + chr7.2:40364616-40364635 MS.gene46162:CDS 30.0%
!! CATTAAGAGGAGTATTCAAT+CGG - chr7.2:40364957-40364976 None:intergenic 30.0%
AAAGCTGAAATTGGAGTCAA+TGG - chr7.2:40364922-40364941 None:intergenic 35.0%
AGATAAACCTTGATCTCTCA+AGG - chr7.2:40364441-40364460 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG + chr7.2:40363763-40363782 MS.gene46162:CDS 35.0%
AGTAAACCCAAAGCTGAAAT+TGG - chr7.2:40364931-40364950 None:intergenic 35.0%
ATCTGCACTAACAAATGGTT+TGG + chr7.2:40365180-40365199 MS.gene46162:CDS 35.0%
CATGTTAACTGAAGTTAAGG+AGG + chr7.2:40365207-40365226 MS.gene46162:CDS 35.0%
CCATAATATTCTTGAACACC+AGG - chr7.2:40364784-40364803 None:intergenic 35.0%
CCTGGTGTTCAAGAATATTA+TGG + chr7.2:40364781-40364800 MS.gene46162:CDS 35.0%
CTACACCATTAACAAATCCT+TGG - chr7.2:40364122-40364141 None:intergenic 35.0%
GATAAACCTTGATCTCTCAA+GGG - chr7.2:40364440-40364459 None:intergenic 35.0%
GGTGGAATTGTTCGAATATT+TGG + chr7.2:40364598-40364617 MS.gene46162:CDS 35.0%
GTATTACCAATTCTTGAACC+TGG + chr7.2:40364763-40364782 MS.gene46162:CDS 35.0%
GTATTTCGCTACAGATGATT+TGG + chr7.2:40364888-40364907 MS.gene46162:CDS 35.0%
TAGAGAAGGAATCTAGCATA+GGG + chr7.2:40363803-40363822 MS.gene46162:CDS 35.0%
TATCAATAGAGGCTAAGAAC+AGG + chr7.2:40364695-40364714 MS.gene46162:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG + chr7.2:40364257-40364276 MS.gene46162:CDS 35.0%
TGGCATAAAAAACCCTAGTT+CGG + chr7.2:40364221-40364240 MS.gene46162:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG + chr7.2:40364922-40364941 MS.gene46162:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG + chr7.2:40364580-40364599 MS.gene46162:CDS 35.0%
! ATTGACTCCAATTTCAGCTT+TGG + chr7.2:40364921-40364940 MS.gene46162:CDS 35.0%
! CAAGCACAAAACCTTTTCTT+TGG - chr7.2:40364271-40364290 None:intergenic 35.0%
! GGTTCAAGAATTGGTAATAC+CGG - chr7.2:40364763-40364782 None:intergenic 35.0%
! TACAAGCTTTAGTCTGTTCA+AGG + chr7.2:40364194-40364213 MS.gene46162:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG + chr7.2:40364526-40364545 MS.gene46162:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG + chr7.2:40364527-40364546 MS.gene46162:CDS 35.0%
AAGTGATCATATCGCGATAG+GGG - chr7.2:40364026-40364045 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG - chr7.2:40363781-40363800 None:intergenic 40.0%
ACAGTTGAAGTTAAGCAAGC+CGG + chr7.2:40364741-40364760 MS.gene46162:CDS 40.0%
AGTTATCACAATCGGAGTCA+AGG + chr7.2:40364990-40365009 MS.gene46162:CDS 40.0%
ATTCGAACAATTCCACCCAA+AGG - chr7.2:40364595-40364614 None:intergenic 40.0%
CAAATCCGTCAAAGTTGACT+TGG - chr7.2:40364398-40364417 None:intergenic 40.0%
CACCATTAACAAATCCTTGG+CGG - chr7.2:40364119-40364138 None:intergenic 40.0%
CTTGCTTAACTTCAACTGTC+GGG - chr7.2:40364740-40364759 None:intergenic 40.0%
GAAGTGATCATATCGCGATA+GGG - chr7.2:40364027-40364046 None:intergenic 40.0%
GCAGTGTCTTAGCATATTGA+AGG + chr7.2:40365141-40365160 MS.gene46162:intron 40.0%
GCTTGCTTAACTTCAACTGT+CGG - chr7.2:40364741-40364760 None:intergenic 40.0%
GCTTTCCAAGTCAACTTTGA+CGG + chr7.2:40364390-40364409 MS.gene46162:CDS 40.0%
GTAGAGAAGGAATCTAGCAT+AGG + chr7.2:40363802-40363821 MS.gene46162:CDS 40.0%
TACTACTTCTACTCAAGCAG+AGG + chr7.2:40363651-40363670 MS.gene46162:CDS 40.0%
TCAAACTAGTCCACCGAAAT+TGG - chr7.2:40365089-40365108 None:intergenic 40.0%
TCTGTAGCGAAATACATAGC+TGG - chr7.2:40364883-40364902 None:intergenic 40.0%
TGAACACCAGGTTCAAGAAT+TGG - chr7.2:40364772-40364791 None:intergenic 40.0%
TGAAGTGATCATATCGCGAT+AGG - chr7.2:40364028-40364047 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG + chr7.2:40363780-40363799 MS.gene46162:CDS 40.0%
! ACCACTTCTTTTACCGAACT+AGG - chr7.2:40364237-40364256 None:intergenic 40.0%
! CCACTTCTTTTACCGAACTA+GGG - chr7.2:40364236-40364255 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG + chr7.2:40363715-40363734 MS.gene46162:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG + chr7.2:40363716-40363735 MS.gene46162:CDS 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG + chr7.2:40364528-40364547 MS.gene46162:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG - chr7.2:40363928-40363947 None:intergenic 40.0%
!! TGTTCCTTTGGAAGCATTAG+CGG + chr7.2:40364628-40364647 MS.gene46162:CDS 40.0%
AACCATCCCTTGAGAGATCA+AGG + chr7.2:40364431-40364450 MS.gene46162:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG - chr7.2:40364436-40364455 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG + chr7.2:40363817-40363836 MS.gene46162:CDS 45.0%
AGTGTGGCAGATCTTGATGA+AGG + chr7.2:40363862-40363881 MS.gene46162:CDS 45.0%
ATCCTTGGCGGAGAGATTTA+AGG - chr7.2:40364107-40364126 None:intergenic 45.0%
CAATCCGCTAATGCTTCCAA+AGG - chr7.2:40364635-40364654 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG + chr7.2:40363789-40363808 MS.gene46162:CDS 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG + chr7.2:40364233-40364252 MS.gene46162:CDS 45.0%
CCTTGTGAGGGTTATGTCAA+GGG + chr7.2:40364856-40364875 MS.gene46162:CDS 45.0%
CTTCTCTACCAATCTCGCAA+TGG - chr7.2:40363791-40363810 None:intergenic 45.0%
TATCACAATCGGAGTCAAGG+AGG + chr7.2:40364993-40365012 MS.gene46162:CDS 45.0%
TCCTTGTGAGGGTTATGTCA+AGG + chr7.2:40364855-40364874 MS.gene46162:CDS 45.0%
TTCCTTAAATCTCTCCGCCA+AGG + chr7.2:40364102-40364121 MS.gene46162:CDS 45.0%
!! CTCCGCCAAGGATTTGTTAA+TGG + chr7.2:40364114-40364133 MS.gene46162:CDS 45.0%
ACTGGGGTGATTCCTTGTGA+GGG + chr7.2:40364844-40364863 MS.gene46162:CDS 50.0%
CCCTTGACATAACCCTCACA+AGG - chr7.2:40364859-40364878 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG + chr7.2:40363720-40363739 MS.gene46162:CDS 50.0%
GCTGCAACCAATCAACTCAG+CGG + chr7.2:40363918-40363937 MS.gene46162:CDS 50.0%
TACTGGGGTGATTCCTTGTG+AGG + chr7.2:40364843-40364862 MS.gene46162:CDS 50.0%
TTCAACTGTCGGGCAATGCA+AGG - chr7.2:40364730-40364749 None:intergenic 50.0%
CGCGTAGGGCGTGCCAATTT+CGG + chr7.2:40365073-40365092 MS.gene46162:intron 60.0%
GTAGGGCGTGCCAATTTCGG+TGG + chr7.2:40365076-40365095 MS.gene46162:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 40363643 40365237 40363643 ID=MS.gene46162
chr7.2 mRNA 40363643 40365237 40363643 ID=MS.gene46162.t1;Parent=MS.gene46162
chr7.2 exon 40363643 40364278 40363643 ID=MS.gene46162.t1.exon1;Parent=MS.gene46162.t1
chr7.2 CDS 40363643 40364278 40363643 ID=cds.MS.gene46162.t1;Parent=MS.gene46162.t1
chr7.2 exon 40364364 40365014 40364364 ID=MS.gene46162.t1.exon2;Parent=MS.gene46162.t1
chr7.2 CDS 40364364 40365014 40364364 ID=cds.MS.gene46162.t1;Parent=MS.gene46162.t1
chr7.2 exon 40365145 40365237 40365145 ID=MS.gene46162.t1.exon3;Parent=MS.gene46162.t1
chr7.2 CDS 40365145 40365237 40365145 ID=cds.MS.gene46162.t1;Parent=MS.gene46162.t1
Gene Sequence

>MS.gene46162

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACATTGTTGACATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGACAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGATGACAATCAACGAACAAAGTACTTCACATGTTACAACTTTAGTGGTTGCCCCTATCGCGATATGATCACTTCAACGTATAAAGATAAACATAAATGTCGATGTGGTCGTCATTTTAAAGATCAAGTTTTCCTTAAATCTCTCCGCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATTGATTATACAAGCTTTAGTCTGTTCAAGGAATTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGCTTGAATATGTTTGTTCATAACTTCTCTCTTAAATTTTTGATTGATTATAATTACTATTACTATTTTATATATACAGGTACTTGATCTGCTTAAATGTTCTTTGCTTTCCAAGTCAACTTTGACGGATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAGATCAAGGTTTATCTTCTGTGATGTTGAAATTAGTGGCAATATCCAAATTATTCTGAAGCTAGTTTTAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAATTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGAGAAAATTGTTCCTTTGGAAGCATTAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAATAGAGGCTAAGAACAGGCTTGCTGATCCTTGCATTGCCCGACAGTTGAAGTTAAGCAAGCCGGTATTACCAATTCTTGAACCTGGTGTTCAAGAATATTATGGTTATGTTGAAAGTAAGAGTATTAAGAAAATGAATTTATCTACTGGGGTGATTCCTTGTGAGGGTTATGTCAAGGGTCCAGCTATGTATTTCGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCTCTTAATGATTTGAAGGAAAAAGTTATCACAATCGGAGTCAAGGAGGTAAACCATAGTAAAATTTATATTAGATTTTTAATCTTAAGTTTATTTAAATGTTCTACGCGTAGGGCGTGCCAATTTCGGTGGACTAGTTTGACTCTTAAAAAATAAAATGCTTATTGTCTTGTTGCAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAATATCTGCACTAACAAATGGTTTGGCTCACATGTTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene46162.t1

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDIVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYKSVADLDEGCFSTETIKQMLLQPINSAEDYCNTLKLNIDDNQRTKYFTCYNFSGCPYRDMITSTYKDKHKCRCGRHFKDQVFLKSLRQGFVNGVATFVITDDLTIKPNCIDYTSFSLFKEFGIKNPSSVKEVVLNVTKEKVLDLLKCSLLSKSTLTDLFLEKKPSLERSRFIFCDVEISGNIQIILKLVLRKSDNKVLYAQGEQDFANLLLSFLTFPLGGIVRIFGENCSFGSISGLYKSIVELNENKYLISIEAKNRLADPCIARQLKLSKPVLPILEPGVQEYYGYVESKSIKKMNLSTGVIPCEGYVKGPAMYFATDDLVVAPLTPISALGLLNRLNTPLNDLKEKVITIGVKECLSILKASLTSISALTNGLAHMLTEVKEEK