AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055261

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055261.t1 MTR_7g062280 68.293 492 131 5 5 473 3 492 0.0 642
MS.gene055261.t1 MTR_7g063920 71.008 476 96 4 1 473 1 437 0.0 639
MS.gene055261.t1 MTR_7g062300 70.127 472 134 4 1 465 1 472 0.0 639
MS.gene055261.t1 MTR_7g063840 54.927 477 197 7 8 473 5 474 2.49e-166 478
MS.gene055261.t1 MTR_7g063880 56.082 485 183 9 1 472 1 468 1.10e-160 463
MS.gene055261.t1 MTR_7g063900 54.291 501 189 12 1 473 1 489 8.84e-158 456
MS.gene055261.t1 MTR_7g063660 52.371 485 203 7 7 473 4 478 2.18e-155 450
MS.gene055261.t1 MTR_7g063820 52.314 497 201 11 1 473 1 485 2.09e-148 432
MS.gene055261.t1 MTR_7g063830 53.040 477 186 10 1 472 1 444 1.22e-147 429
MS.gene055261.t1 MTR_3g007740 54.219 474 168 10 8 467 5 443 1.36e-145 424
MS.gene055261.t1 MTR_7g063670 52.510 478 181 10 10 473 13 458 3.03e-142 416
MS.gene055261.t1 MTR_7g063890 52.469 486 204 9 9 472 24 504 1.81e-133 395
MS.gene055261.t1 MTR_7g066570 40.779 488 259 6 4 470 6 484 4.46e-111 340
MS.gene055261.t1 MTR_3g065200 43.421 456 194 10 12 453 3 408 3.70e-102 313
MS.gene055261.t1 MTR_7g066260 42.204 481 244 10 1 466 1 462 7.64e-101 311
MS.gene055261.t1 MTR_7g066430 39.673 489 263 9 13 472 5 490 7.92e-97 301
MS.gene055261.t1 MTR_7g066430 28.326 233 128 10 256 460 4 225 4.60e-12 68.6
MS.gene055261.t1 MTR_7g066410 37.087 515 260 10 10 468 8 514 4.18e-95 297
MS.gene055261.t1 MTR_7g066410 27.119 236 154 5 6 230 278 506 6.77e-13 71.2
MS.gene055261.t1 MTR_7g066480 41.113 467 204 8 12 467 16 422 1.61e-94 293
MS.gene055261.t1 MTR_7g012680 39.669 484 249 9 1 473 1 452 1.13e-93 291
MS.gene055261.t1 MTR_7g058710 36.417 508 264 11 1 473 1 484 1.85e-93 291
MS.gene055261.t1 MTR_7g066340 38.365 477 259 10 1 466 1 453 6.12e-91 285
MS.gene055261.t1 MTR_7g066360 40.795 478 230 13 2 462 4 445 6.89e-87 275
MS.gene055261.t1 MTR_7g066290 38.831 479 234 8 1 466 1 433 1.22e-86 272
MS.gene055261.t1 MTR_7g066490 39.140 465 200 10 12 466 16 407 5.33e-86 270
MS.gene055261.t1 MTR_7g066490 30.568 229 130 9 243 460 6 216 1.42e-11 66.6
MS.gene055261.t1 MTR_7g066580 37.397 484 223 11 24 469 7 448 9.59e-86 270
MS.gene055261.t1 MTR_7g066580 26.939 245 137 8 11 231 214 440 4.64e-14 74.3
MS.gene055261.t1 MTR_7g066350 37.500 472 253 9 11 468 8 451 4.97e-84 266
MS.gene055261.t1 MTR_7g066400 36.008 486 246 11 1 468 1 439 3.50e-82 261
MS.gene055261.t1 MTR_7g063720 54.812 239 100 4 236 473 2 233 1.28e-81 253
MS.gene055261.t1 MTR_7g063720 29.752 242 137 9 14 249 25 239 5.18e-18 83.6
MS.gene055261.t1 MTR_1g041315 34.034 476 257 9 3 450 5 451 2.50e-75 244
MS.gene055261.t1 MTR_7g058700 35.106 470 213 8 24 473 531 928 8.81e-72 244
MS.gene055261.t1 MTR_4g019310 34.990 503 285 13 6 473 2 497 3.53e-71 234
MS.gene055261.t1 MTR_7g066310 33.043 460 222 9 11 466 6 383 5.47e-68 223
MS.gene055261.t1 MTR_7g062270 59.239 184 73 2 6 188 3 185 6.66e-65 214
MS.gene055261.t1 MTR_7g062270 30.769 169 102 6 257 412 11 177 7.85e-13 70.5
MS.gene055261.t1 MTR_7g063850 44.850 301 142 7 183 472 1 288 2.73e-63 207
MS.gene055261.t1 MTR_2g029400 31.410 468 242 9 2 456 4 405 8.81e-63 209
MS.gene055261.t1 MTR_4g017830 30.651 522 297 16 1 472 1 507 1.53e-55 193
MS.gene055261.t1 MTR_4g017610 31.653 496 279 15 5 462 2 475 3.73e-53 186
MS.gene055261.t1 MTR_4g017410 31.864 499 297 13 6 472 3 490 9.14e-52 183
MS.gene055261.t1 MTR_4g019340 31.078 473 291 12 10 454 36 501 1.23e-51 182
MS.gene055261.t1 MTR_7g063690 41.281 281 95 6 8 283 7 222 1.46e-49 170
MS.gene055261.t1 MTR_4g017470 28.053 524 277 13 1 472 1 476 1.71e-48 174
MS.gene055261.t1 MTR_4g017440 29.709 515 312 14 1 472 1 508 7.12e-47 169
MS.gene055261.t1 MTR_7g066280 31.051 409 230 11 91 466 1 390 4.41e-45 162
MS.gene055261.t1 MTR_7g066280 27.652 264 141 14 1 230 137 384 6.73e-13 70.9
MS.gene055261.t1 MTR_1g014060 44.390 205 109 4 21 223 9 210 2.58e-44 160
MS.gene055261.t1 MTR_1g014060 36.453 203 117 4 275 473 197 391 3.79e-29 118
MS.gene055261.t1 MTR_1g014060 28.241 216 131 8 269 466 13 222 7.86e-15 76.6
MS.gene055261.t1 MTR_7g066680 34.768 302 141 8 213 462 37 334 1.15e-39 146
MS.gene055261.t1 MTR_7g066680 30.928 194 107 10 6 186 80 259 1.65e-14 75.1
MS.gene055261.t1 MTR_7g100420 34.365 323 185 6 154 462 84 393 4.45e-36 138
MS.gene055261.t1 MTR_7g100420 66.000 50 17 0 6 55 33 82 2.50e-12 68.9
MS.gene055261.t1 MTR_8g023240 26.050 476 290 15 13 458 38 481 1.28e-35 139
MS.gene055261.t1 MTR_4g017550 27.872 470 269 18 42 462 21 469 7.16e-30 122
MS.gene055261.t1 MTR_4g017550 28.235 255 136 10 13 247 248 475 4.37e-14 74.7
MS.gene055261.t1 MTR_7g063760 63.514 74 26 1 401 473 1 74 2.79e-25 99.0
MS.gene055261.t1 MTR_1g115440 32.685 257 132 10 1 235 1 238 1.27e-23 99.8
MS.gene055261.t1 MTR_1g115440 29.204 226 136 6 256 460 11 233 2.22e-19 87.8
MS.gene055261.t1 MTR_0150s0010 30.738 244 147 8 5 235 3 237 4.32e-21 92.4
MS.gene055261.t1 MTR_8g445860 32.520 246 139 8 3 236 8 238 9.40e-21 91.7
MS.gene055261.t1 MTR_2g067310 37.989 179 70 7 18 196 53 190 1.44e-18 85.5
MS.gene055261.t1 MTR_7g066390 56.164 73 32 0 394 466 50 122 1.75e-18 82.8
MS.gene055261.t1 MTR_1g115455 28.571 259 136 9 1 236 1 233 1.68e-14 73.2
MS.gene055261.t1 MTR_7g063870 48.193 83 42 1 139 220 75 157 1.10e-13 71.2
MS.gene055261.t1 MTR_7g063870 57.143 56 24 0 6 61 25 80 1.45e-13 70.9
MS.gene055261.t1 MTR_1g115450 35.714 126 67 4 3 123 2 118 1.72e-13 68.2
MS.gene055261.t1 MTR_4g019330 29.756 205 94 5 270 472 32 188 4.51e-13 68.2
MS.gene055261.t1 MTR_8g445920 38.372 86 48 1 5 90 3 83 1.03e-11 62.0
MS.gene055261.t1 MTR_8g044890 38.372 86 48 1 5 90 3 83 1.03e-11 62.0
MS.gene055261.t1 MTR_1g115470 36.842 95 53 2 14 106 8 97 7.95e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055261.t1 AT3G09140 34.047 514 280 16 1 471 1 498 3.21e-67 224
MS.gene055261.t1 AT3G09140 32.288 542 280 17 1 471 1 526 4.81e-62 211
MS.gene055261.t1 AT5G01120 33.198 491 272 14 13 462 10 485 2.09e-61 209
MS.gene055261.t1 AT5G01130 32.845 478 280 10 7 473 4 451 1.02e-59 202
MS.gene055261.t1 AT5G01130 25.778 225 147 7 250 460 3 221 3.14e-11 65.9
MS.gene055261.t1 AT5G01150 30.604 513 280 10 7 473 4 486 4.19e-59 202
MS.gene055261.t1 AT5G01140 29.175 497 280 13 7 473 4 458 3.62e-55 191
MS.gene055261.t1 AT5G43240 31.325 498 276 13 13 462 10 489 5.96e-52 183
MS.gene055261.t1 AT5G43240 31.325 498 276 13 13 462 10 489 5.96e-52 183
MS.gene055261.t1 AT5G43240 31.325 498 276 13 13 462 10 489 5.96e-52 183
MS.gene055261.t1 AT3G09110 34.226 336 203 7 14 341 11 336 1.77e-50 175
MS.gene055261.t1 AT3G09120 36.991 319 166 8 11 307 5 310 3.16e-48 168
MS.gene055261.t1 AT3G09120 28.444 225 140 6 256 460 6 229 3.43e-15 76.6
MS.gene055261.t1 AT5G37320 29.495 495 287 18 13 468 10 481 2.18e-38 146
MS.gene055261.t1 AT5G43240 28.615 325 192 9 168 462 31 345 2.50e-18 87.0

Find 80 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGTCGAGGATTTGTTAA+TGG 0.255342 7.4:-41451902 MS.gene055261:CDS
TTTGGGCTACTCCAGGAATT+TGG 0.263251 7.4:-41451815 MS.gene055261:CDS
GCCACTAATTTCAACATTAC+AGG 0.264233 7.4:+41451442 None:intergenic
TCCTGTAATGTTGAAATTAG+TGG 0.282405 7.4:-41451443 MS.gene055261:CDS
CCTTCCCTGCTTCTGCAAAT+AGG 0.332766 7.4:+41452299 None:intergenic
AACATTTCCTTCACCAAACT+TGG 0.340723 7.4:+41451782 None:intergenic
TGTATTGACAATGCAAGCTT+TGG 0.346373 7.4:-41451833 MS.gene055261:CDS
CACACCTCTTGATGATTTGA+AGG 0.352524 7.4:-41450901 MS.gene055261:CDS
TTTGGAGAAAATTGTTCTTT+GGG 0.362984 7.4:-41451287 MS.gene055261:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41452336 None:intergenic
AATTCTTGAGCCCGATGTTC+TGG 0.372767 7.4:-41451132 MS.gene055261:CDS
TTTCAAAAGCAGCTAAGAAT+AGG 0.383495 7.4:-41451208 MS.gene055261:CDS
GTATGTTGCTACAGATGATT+TGG 0.390764 7.4:-41450976 MS.gene055261:CDS
GGTTGTCACCATTGGAGTTA+AGG 0.390924 7.4:-41450874 MS.gene055261:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.4:-41452239 MS.gene055261:CDS
AATCCTCGACGGAATTGTTT+AGG 0.391576 7.4:+41451911 None:intergenic
TTGGGAAGAAACCATCTGTT+GGG 0.404610 7.4:-41451481 MS.gene055261:CDS
TTGTTTAGGCAAAACTTGAT+AGG 0.406296 7.4:+41451925 None:intergenic
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.4:-41452256 MS.gene055261:CDS
AACCATCTGTTGGGGTTGGC+AGG 0.416063 7.4:-41451472 MS.gene055261:CDS
TTGTCTCCGATTTCAGCTAT+AGG 0.420760 7.4:-41450942 MS.gene055261:CDS
AGAACATCGGGCTCAAGAAT+TGG 0.433643 7.4:+41451134 None:intergenic
AGTAAACCTATAGCTGAAAT+CGG 0.439658 7.4:+41450936 None:intergenic
TCTCAATGTCACTAAAGAAA+AGG 0.439665 7.4:-41451759 MS.gene055261:intron
TCTTGATGATTTGAAGGAAA+AGG 0.443248 7.4:-41450895 MS.gene055261:CDS
GTATTGACAATGCAAGCTTT+GGG 0.446570 7.4:-41451832 MS.gene055261:CDS
AAGGAAAAGGTTGTCACCAT+TGG 0.447263 7.4:-41450882 MS.gene055261:CDS
AAAGTCCTATTTGCAGAAGC+AGG 0.448673 7.4:-41452304 MS.gene055261:CDS
TGGTTACATTATTCCAAAGC+TGG 0.461453 7.4:-41451080 MS.gene055261:CDS
CTTGCATTGTCAATACAACT+TGG 0.467131 7.4:+41451839 None:intergenic
CATCAAGAGGTGTGTTGAAA+CGG 0.475007 7.4:+41450910 None:intergenic
CAGTAATACTCCAGAACATC+GGG 0.486208 7.4:+41451122 None:intergenic
TTAGACAACCAACTGTAACT+TGG 0.486889 7.4:+41452194 None:intergenic
TCAACATCCGCACTCACAAA+TGG 0.487975 7.4:-41450703 MS.gene055261:CDS
TGATAAAATTAAACAAATGC+TGG 0.493259 7.4:-41452122 MS.gene055261:CDS
ATCCGCACTCACAAATGGTC+TGG 0.494111 7.4:-41450698 MS.gene055261:CDS
TAATCTTCCGCTGAGTTACA+TGG 0.501847 7.4:+41452094 None:intergenic
TTAAAAGGGGTCACTCATGA+AGG 0.505894 7.4:-41451020 MS.gene055261:CDS
TGCAAGCTTTGGGCTACTCC+AGG 0.507384 7.4:-41451822 MS.gene055261:CDS
GCTTGCTTAATGTTAAATGC+GGG 0.515939 7.4:+41451165 None:intergenic
TCTTACCTCCTTAACTCCAA+TGG 0.516510 7.4:+41450866 None:intergenic
AACATCGGTCAAAGTAGACT+TGG 0.519644 7.4:+41451508 None:intergenic
ATATGAACATCTGAAGTACT+TGG 0.532076 7.4:+41452030 None:intergenic
TTTGGGAAGAAACCATCTGT+TGG 0.536861 7.4:-41451482 MS.gene055261:CDS
AGCATAGGCCAAGTTACAGT+TGG 0.539867 7.4:-41452202 MS.gene055261:CDS
ACATCTATTTGTCGCTGTGT+GGG 0.544141 7.4:-41451956 MS.gene055261:CDS
TGCTTGCTTAATGTTAAATG+CGG 0.544421 7.4:+41451164 None:intergenic
CACTCATGAAGGTTATGTGA+AGG 0.547605 7.4:-41451009 MS.gene055261:CDS
TCTGTAGCAACATACATAGC+TGG 0.553647 7.4:+41450984 None:intergenic
AGAAGCAGGGAAGGACTTTG+TGG 0.556414 7.4:-41452290 MS.gene055261:CDS
TACATCTATTTGTCGCTGTG+TGG 0.559990 7.4:-41451957 MS.gene055261:CDS
AAGAAACCATCTGTTGGGGT+TGG 0.563173 7.4:-41451476 MS.gene055261:CDS
CCTATTTGCAGAAGCAGGGA+AGG 0.576721 7.4:-41452299 MS.gene055261:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.4:-41452230 MS.gene055261:CDS
ACAGTAATACTCCAGAACAT+CGG 0.582450 7.4:+41451121 None:intergenic
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.4:+41452241 None:intergenic
TGAACATCTGAAGTACTTGG+TGG 0.590030 7.4:+41452033 None:intergenic
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.4:+41452231 None:intergenic
GGTGAAGATAAAAGTAATTG+CGG 0.598652 7.4:-41451059 MS.gene055261:CDS
AACCTGCCAACCCCAACAGA+TGG 0.601175 7.4:+41451470 None:intergenic
GTTAAATGCGGGGAAATGCA+AGG 0.603048 7.4:+41451176 None:intergenic
TGGGAAGAAACCATCTGTTG+GGG 0.604158 7.4:-41451480 MS.gene055261:CDS
AAGTCCTATTTGCAGAAGCA+GGG 0.609775 7.4:-41452303 MS.gene055261:CDS
AGTGTGGCAGATCTCGATGA+AGG 0.613302 7.4:-41452157 MS.gene055261:CDS
GGCCAGACCATTTGTGAGTG+CGG 0.613514 7.4:+41450696 None:intergenic
TATAGCTGAAATCGGAGACA+AGG 0.622787 7.4:+41450944 None:intergenic
ACTCATGAAGGTTATGTGAA+GGG 0.622820 7.4:-41451008 MS.gene055261:CDS
CTTGCTTAATGTTAAATGCG+GGG 0.623908 7.4:+41451166 None:intergenic
CACCATTAACAAATCCTCGA+CGG 0.626619 7.4:+41451900 None:intergenic
TGTCACCATTGGAGTTAAGG+AGG 0.627855 7.4:-41450871 MS.gene055261:intron
TTTAACTTCAGTTAACAGGT+GGG 0.629710 7.4:+41450675 None:intergenic
CTAGTTATAAGAAAATCTGA+TGG 0.635745 7.4:-41451398 MS.gene055261:CDS
AAACTCACTTTATCGAAGTG+TGG 0.637039 7.4:-41452173 MS.gene055261:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.643725 7.4:-41452217 MS.gene055261:CDS
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.4:-41452368 MS.gene055261:CDS
ATACGAGTAATTCCTCCCAA+AGG 0.650121 7.4:+41451311 None:intergenic
ATAGCTGAAATCGGAGACAA+GGG 0.663231 7.4:+41450945 None:intergenic
TTGCCTAAACAATTCCGTCG+AGG 0.663253 7.4:-41451914 MS.gene055261:CDS
GAACATCTGAAGTACTTGGT+GGG 0.688402 7.4:+41452034 None:intergenic
GGTGCAACCATGTAACTCAG+CGG 0.750837 7.4:-41452101 MS.gene055261:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATGAATTTTTTAAAAG+GGG - chr7.4:41452006-41452025 MS.gene055261:CDS 10.0%
!!! TTTTAATGCATTTATTTACT+TGG - chr7.4:41452234-41452253 MS.gene055261:CDS 15.0%
!! ACAAACAAAAGCAAAAATTT+AGG + chr7.4:41451328-41451347 None:intergenic 20.0%
!! CAAACAAAAGCAAAAATTTA+GGG + chr7.4:41451327-41451346 None:intergenic 20.0%
!! TGATAAAATTAAACAAATGC+TGG - chr7.4:41450917-41450936 MS.gene055261:CDS 20.0%
!! TTTCTATTACGAATTGATAT+AGG - chr7.4:41451478-41451497 MS.gene055261:CDS 20.0%
!!! TATTACTGTTTTAAGGATAA+TGG - chr7.4:41451932-41451951 MS.gene055261:CDS 20.0%
! CTAGTTATAAGAAAATCTGA+TGG - chr7.4:41451641-41451660 MS.gene055261:intron 25.0%
! TGGAATTAAAAATCCAAGTT+TGG - chr7.4:41451244-41451263 MS.gene055261:CDS 25.0%
! TGGATACTAGAATTTAACTA+TGG - chr7.4:41452254-41452273 MS.gene055261:CDS 25.0%
! TTTCTTCCCAAAAAAAACAT+CGG + chr7.4:41451549-41451568 None:intergenic 25.0%
! TTTGGAGAAAATTGTTCTTT+GGG - chr7.4:41451752-41451771 MS.gene055261:intron 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41450708-41450727 MS.gene055261:CDS 25.0%
!! ATATTTAAAGTTAAGAGAGG+TGG + chr7.4:41451419-41451438 None:intergenic 25.0%
!! GCAATATTTAAAGTTAAGAG+AGG + chr7.4:41451422-41451441 None:intergenic 25.0%
!! TTACCTTTCTTATTGTTTTC+AGG - chr7.4:41452284-41452303 MS.gene055261:CDS 25.0%
!!! CTTTTTTAACTTCAGTTAAC+AGG + chr7.4:41452371-41452390 None:intergenic 25.0%
!!! GATTTTTAATTCCAAATTCC+TGG + chr7.4:41451238-41451257 None:intergenic 25.0%
!!! GTTTTAAGGATAATGGTATT+TGG - chr7.4:41451939-41451958 MS.gene055261:CDS 25.0%
!!! TTTTGGAGAAAATTGTTCTT+TGG - chr7.4:41451751-41451770 MS.gene055261:intron 25.0%
AGTAAACCTATAGCTGAAAT+CGG + chr7.4:41452106-41452125 None:intergenic 30.0%
GGTGAAGATAAAAGTAATTG+CGG - chr7.4:41451980-41451999 MS.gene055261:CDS 30.0%
TCCTGTAATGTTGAAATTAG+TGG - chr7.4:41451596-41451615 MS.gene055261:intron 30.0%
TCTCAATGTCACTAAAGAAA+AGG - chr7.4:41451280-41451299 MS.gene055261:CDS 30.0%
TGCTTGCTTAATGTTAAATG+CGG + chr7.4:41451878-41451897 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41450706-41450725 None:intergenic 30.0%
TTGTTTAGGCAAAACTTGAT+AGG + chr7.4:41451117-41451136 None:intergenic 30.0%
TTTCAAAAGCAGCTAAGAAT+AGG - chr7.4:41451831-41451850 MS.gene055261:CDS 30.0%
! ATATGAACATCTGAAGTACT+TGG + chr7.4:41451012-41451031 None:intergenic 30.0%
! TAAAAATCCAAGTTTGGTGA+AGG - chr7.4:41451250-41451269 MS.gene055261:CDS 30.0%
! TCTTGATGATTTGAAGGAAA+AGG - chr7.4:41452144-41452163 MS.gene055261:CDS 30.0%
! TTTAACTTCAGTTAACAGGT+GGG + chr7.4:41452367-41452386 None:intergenic 30.0%
! TTTTCCTTCAAATCATCAAG+AGG + chr7.4:41452145-41452164 None:intergenic 30.0%
!! AAGCTTTCTTACTTTTCCTT+TGG - chr7.4:41451712-41451731 MS.gene055261:intron 30.0%
!! ACAATGTCAGAGTTATTTTG+TGG - chr7.4:41451359-41451378 MS.gene055261:CDS 30.0%
!! AGCTTTCTTACTTTTCCTTT+GGG - chr7.4:41451713-41451732 MS.gene055261:intron 30.0%
!! CAATGTCAGAGTTATTTTGT+GGG - chr7.4:41451360-41451379 MS.gene055261:CDS 30.0%
!! TCTGGAGTATTACTGTTTTA+AGG - chr7.4:41451925-41451944 MS.gene055261:CDS 30.0%
!!! ACTTTGACCGATGTTTTTTT+TGG - chr7.4:41451539-41451558 MS.gene055261:CDS 30.0%
!!! CTTTGACCGATGTTTTTTTT+GGG - chr7.4:41451540-41451559 MS.gene055261:CDS 30.0%
!!! TTTTAACTTCAGTTAACAGG+TGG + chr7.4:41452368-41452387 None:intergenic 30.0%
AAACTCACTTTATCGAAGTG+TGG - chr7.4:41450866-41450885 MS.gene055261:intron 35.0%
AACATTTCCTTCACCAAACT+TGG + chr7.4:41451260-41451279 None:intergenic 35.0%
ACAGTAATACTCCAGAACAT+CGG + chr7.4:41451921-41451940 None:intergenic 35.0%
ACTCATGAAGGTTATGTGAA+GGG - chr7.4:41452031-41452050 MS.gene055261:CDS 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.4:41450783-41450802 MS.gene055261:intron 35.0%
CTTGCATTGTCAATACAACT+TGG + chr7.4:41451203-41451222 None:intergenic 35.0%
CTTGCTTAATGTTAAATGCG+GGG + chr7.4:41451876-41451895 None:intergenic 35.0%
GAGCCTGAAAACAATAAGAA+AGG + chr7.4:41452290-41452309 None:intergenic 35.0%
GCCACTAATTTCAACATTAC+AGG + chr7.4:41451600-41451619 None:intergenic 35.0%
GCTTGCTTAATGTTAAATGC+GGG + chr7.4:41451877-41451896 None:intergenic 35.0%
GTATGTTGCTACAGATGATT+TGG - chr7.4:41452063-41452082 MS.gene055261:CDS 35.0%
TGGTTACATTATTCCAAAGC+TGG - chr7.4:41451959-41451978 MS.gene055261:CDS 35.0%
TTAGACAACCAACTGTAACT+TGG + chr7.4:41450848-41450867 None:intergenic 35.0%
! ACTTTTATCTTCACCAGCTT+TGG + chr7.4:41451975-41451994 None:intergenic 35.0%
! GGAGGAATTACTCGTATTTT+TGG - chr7.4:41451734-41451753 MS.gene055261:intron 35.0%
! GTATTGACAATGCAAGCTTT+GGG - chr7.4:41451207-41451226 MS.gene055261:CDS 35.0%
! TGTATTGACAATGCAAGCTT+TGG - chr7.4:41451206-41451225 MS.gene055261:CDS 35.0%
!! TTTCTTACTTTTCCTTTGGG+AGG - chr7.4:41451716-41451735 MS.gene055261:intron 35.0%
AAAGTCCTATTTGCAGAAGC+AGG - chr7.4:41450735-41450754 MS.gene055261:CDS 40.0%
AACATCGGTCAAAGTAGACT+TGG + chr7.4:41451534-41451553 None:intergenic 40.0%
AAGGAAAAGGTTGTCACCAT+TGG - chr7.4:41452157-41452176 MS.gene055261:CDS 40.0%
AAGTCCTATTTGCAGAAGCA+GGG - chr7.4:41450736-41450755 MS.gene055261:CDS 40.0%
AATCCTCGACGGAATTGTTT+AGG + chr7.4:41451131-41451150 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.4:41450801-41450820 None:intergenic 40.0%
ACATCTATTTGTCGCTGTGT+GGG - chr7.4:41451083-41451102 MS.gene055261:CDS 40.0%
ATACGAGTAATTCCTCCCAA+AGG + chr7.4:41451731-41451750 None:intergenic 40.0%
ATAGCTGAAATCGGAGACAA+GGG + chr7.4:41452097-41452116 None:intergenic 40.0%
CACCATTAACAAATCCTCGA+CGG + chr7.4:41451142-41451161 None:intergenic 40.0%
CACTCATGAAGGTTATGTGA+AGG - chr7.4:41452030-41452049 MS.gene055261:CDS 40.0%
CAGTAATACTCCAGAACATC+GGG + chr7.4:41451920-41451939 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.4:41450822-41450841 MS.gene055261:intron 40.0%
TAATCTTCCGCTGAGTTACA+TGG + chr7.4:41450948-41450967 None:intergenic 40.0%
TACATCTATTTGTCGCTGTG+TGG - chr7.4:41451082-41451101 MS.gene055261:CDS 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.4:41450671-41450690 MS.gene055261:CDS 40.0%
TATAGCTGAAATCGGAGACA+AGG + chr7.4:41452098-41452117 None:intergenic 40.0%
TCTGTAGCAACATACATAGC+TGG + chr7.4:41452058-41452077 None:intergenic 40.0%
TCTTACCTCCTTAACTCCAA+TGG + chr7.4:41452176-41452195 None:intergenic 40.0%
TTAAAAGGGGTCACTCATGA+AGG - chr7.4:41452019-41452038 MS.gene055261:CDS 40.0%
TTGGGAAGAAACCATCTGTT+GGG - chr7.4:41451558-41451577 MS.gene055261:intron 40.0%
TTGTCTCCGATTTCAGCTAT+AGG - chr7.4:41452097-41452116 MS.gene055261:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.4:41450800-41450819 MS.gene055261:intron 40.0%
TTTGGGAAGAAACCATCTGT+TGG - chr7.4:41451557-41451576 MS.gene055261:intron 40.0%
! CAAGATTTTGTGTGCTCAAG+GGG - chr7.4:41451664-41451683 MS.gene055261:intron 40.0%
! CACACCTCTTGATGATTTGA+AGG - chr7.4:41452138-41452157 MS.gene055261:CDS 40.0%
! CATCAAGAGGTGTGTTGAAA+CGG + chr7.4:41452132-41452151 None:intergenic 40.0%
! GAACATCTGAAGTACTTGGT+GGG + chr7.4:41451008-41451027 None:intergenic 40.0%
! GCAAGATTTTGTGTGCTCAA+GGG - chr7.4:41451663-41451682 MS.gene055261:intron 40.0%
! TGAACATCTGAAGTACTTGG+TGG + chr7.4:41451009-41451028 None:intergenic 40.0%
!! TGTCAGAGTTATTTTGTGGG+TGG - chr7.4:41451363-41451382 MS.gene055261:CDS 40.0%
!! TTCCGTCGAGGATTTGTTAA+TGG - chr7.4:41451137-41451156 MS.gene055261:CDS 40.0%
AAGAAACCATCTGTTGGGGT+TGG - chr7.4:41451563-41451582 MS.gene055261:intron 45.0%
AATTCTTGAGCCCGATGTTC+TGG - chr7.4:41451907-41451926 MS.gene055261:CDS 45.0%
AGAACATCGGGCTCAAGAAT+TGG + chr7.4:41451908-41451927 None:intergenic 45.0%
AGAGGTGGTTGTAGAGAAGT+GGG + chr7.4:41451404-41451423 None:intergenic 45.0%
AGCATAGGCCAAGTTACAGT+TGG - chr7.4:41450837-41450856 MS.gene055261:intron 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.4:41450809-41450828 MS.gene055261:intron 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.4:41450811-41450830 None:intergenic 45.0%
GGTTGTCACCATTGGAGTTA+AGG - chr7.4:41452165-41452184 MS.gene055261:CDS 45.0%
GTTAAATGCGGGGAAATGCA+AGG + chr7.4:41451866-41451885 None:intergenic 45.0%
TCAACATCCGCACTCACAAA+TGG - chr7.4:41452336-41452355 MS.gene055261:CDS 45.0%
TGGGAAGAAACCATCTGTTG+GGG - chr7.4:41451559-41451578 MS.gene055261:intron 45.0%
TGTCACCATTGGAGTTAAGG+AGG - chr7.4:41452168-41452187 MS.gene055261:CDS 45.0%
TTGCCTAAACAATTCCGTCG+AGG - chr7.4:41451125-41451144 MS.gene055261:CDS 45.0%
TTTGGGCTACTCCAGGAATT+TGG - chr7.4:41451224-41451243 MS.gene055261:CDS 45.0%
! GGCAAGATTTTGTGTGCTCA+AGG - chr7.4:41451662-41451681 MS.gene055261:intron 45.0%
!!! AAATTAATGAATTTTTTAAA+AGG - chr7.4:41452004-41452023 MS.gene055261:CDS 5.0%
!!! AATTAATGAATTTTTTAAAA+GGG - chr7.4:41452005-41452024 MS.gene055261:CDS 5.0%
AGAAGCAGGGAAGGACTTTG+TGG - chr7.4:41450749-41450768 MS.gene055261:intron 50.0%
AGTGTGGCAGATCTCGATGA+AGG - chr7.4:41450882-41450901 MS.gene055261:CDS 50.0%
ATCCGCACTCACAAATGGTC+TGG - chr7.4:41452341-41452360 MS.gene055261:CDS 50.0%
CCTATTTGCAGAAGCAGGGA+AGG - chr7.4:41450740-41450759 MS.gene055261:intron 50.0%
CCTTCCCTGCTTCTGCAAAT+AGG + chr7.4:41450743-41450762 None:intergenic 50.0%
GAGAGGTGGTTGTAGAGAAG+TGG + chr7.4:41451405-41451424 None:intergenic 50.0%
GGTGCAACCATGTAACTCAG+CGG - chr7.4:41450938-41450957 MS.gene055261:CDS 50.0%
AACCTGCCAACCCCAACAGA+TGG + chr7.4:41451572-41451591 None:intergenic 55.0%
GGCCAGACCATTTGTGAGTG+CGG + chr7.4:41452346-41452365 None:intergenic 55.0%
! AACCATCTGTTGGGGTTGGC+AGG - chr7.4:41451567-41451586 MS.gene055261:intron 55.0%
!! TGCAAGCTTTGGGCTACTCC+AGG - chr7.4:41451217-41451236 MS.gene055261:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41450663 41452398 41450663 ID=MS.gene055261
chr7.4 mRNA 41450663 41452398 41450663 ID=MS.gene055261.t1;Parent=MS.gene055261
chr7.4 exon 41451760 41452398 41451760 ID=MS.gene055261.t1.exon1;Parent=MS.gene055261.t1
chr7.4 CDS 41451760 41452398 41451760 ID=cds.MS.gene055261.t1;Parent=MS.gene055261.t1
chr7.4 exon 41450872 41451561 41450872 ID=MS.gene055261.t1.exon2;Parent=MS.gene055261.t1
chr7.4 CDS 41450872 41451561 41450872 ID=cds.MS.gene055261.t1;Parent=MS.gene055261.t1
chr7.4 exon 41450663 41450755 41450663 ID=MS.gene055261.t1.exon3;Parent=MS.gene055261.t1
chr7.4 CDS 41450663 41450755 41450663 ID=cds.MS.gene055261.t1;Parent=MS.gene055261.t1
Gene Sequence

>MS.gene055261

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCCTATTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGCCAAGTTACAGTTGGTTGTCTAAACTCACTTTATCGAAGTGTGGCAGATCTCGATGAAGGTTATCTGAGTACTGATAAAATTAAACAAATGCTGGTGCAACCATGTAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGACGACACTCAACCCACCAAGTACTTCAGATGTTCATATTATAATGACGATGACTACACTCATGATTTGATAAAATCAACAATTAAAGATACATCTATTTGTCGCTGTGTGGGTTTTTTGTCCTATCAAGTTTTGCCTAAACAATTCCGTCGAGGATTTGTTAATGGTGTTGCTACTTTTGTGATAACTGATGATCTGAATGTCATTCCAAGTTGTATTGACAATGCAAGCTTTGGGCTACTCCAGGAATTTGGAATTAAAAATCCAAGTTTGGTGAAGGAAATGTTTCTCAATGTCACTAAAGAAAAGGTTTTGTATTTGAATTTCTATTCCCTAAATTTTTGCTTTTGTTTGTTTTTTGAATGAACAATGTCAGAGTTATTTTGTGGGTGGAGATTTTACAAGTAGCCCACTTCTCTACAACCACCTCTCTTAACTTTAAATATTGCTATTTTTTTTTTTTTTATCAATTATGTTTGCTAATTTTTCTATTACGAATTGATATAGGTACTTGATTTACTAAAATGCTCTTTGCTCTCCAAGTCTACTTTGACCGATGTTTTTTTTGGGAAGAAACCATCTGTTGGGGTTGGCAGGTTTTTCTCCTGTAATGTTGAAATTAGTGGCAATATGCAAATCATTTTAAAACTAGTTATAAGAAAATCTGATGGCAAGATTTTGTGTGCTCAAGGGGAACAAGATTTTGCAGACTTACTTTTAAGCTTTCTTACTTTTCCTTTGGGAGGAATTACTCGTATTTTTGGAGAAAATTGTTCTTTGGGCAGCATTAATCGATTCTTCAAGAGCGTAGCTGATTTAAATGAAAACAAATATTTCATTTCAAAAGCAGCTAAGAATAGGATTGTTGATCCTTGCATTTCCCCGCATTTAACATTAAGCAAGCAAATATTACCAATTCTTGAGCCCGATGTTCTGGAGTATTACTGTTTTAAGGATAATGGTATTTGGTTACATTATTCCAAAGCTGGTGAAGATAAAAGTAATTGCGGAAAATTAATGAATTTTTTAAAAGGGGTCACTCATGAAGGTTATGTGAAGGGTCCAGCTATGTATGTTGCTACAGATGATTTGGTCATTGCACCCTTGTCTCCGATTTCAGCTATAGGTTTACTTAACCGTTTCAACACACCTCTTGATGATTTGAAGGAAAAGGTTGTCACCATTGGAGTTAAGGAGGTAAGAAATTGTAAAAATTGCTAGTGTAGATTTTTATGCTCATTTTTTAATGCATTTATTTACTTGGATACTAGAATTTAACTATGGCTTATATTTACCTTTCTTATTGTTTTCAGGCTCTCAGTATATTGAATGCTGCTTTAACTTCAACATCCGCACTCACAAATGGTCTGGCCCACCTGTTAACTGAAGTTAAAAAAGAGAAGTGA
Protein sequence

>MS.gene055261.t1

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGYLSTDKIKQMLVQPCNSAEDYCNTLKLNIDDTQPTKYFRCSYYNDDDYTHDLIKSTIKDTSICRCVGFLSYQVLPKQFRRGFVNGVATFVITDDLNVIPSCIDNASFGLLQEFGIKNPSLVKEMFLNVTKEKVLDLLKCSLLSKSTLTDVFFGKKPSVGVGRFFSCNVEISGNMQIILKLVIRKSDGKILCAQGEQDFADLLLSFLTFPLGGITRIFGENCSLGSINRFFKSVADLNENKYFISKAAKNRIVDPCISPHLTLSKQILPILEPDVLEYYCFKDNGIWLHYSKAGEDKSNCGKLMNFLKGVTHEGYVKGPAMYVATDDLVIAPLSPISAIGLLNRFNTPLDDLKEKVVTIGVKEALSILNAALTSTSALTNGLAHLLTEVKKEK